Warning: Permanently added '54.234.206.15' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6408371-fedora-rawhide-aarch64 --chroot fedora-rawhide-aarch64 Version: 0.69 PID: 5759 Logging PID: 5760 Task: {'appstream': False, 'background': True, 'build_id': 6408371, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-aarch64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'accf9fc25f5353490bda96853ba33b6de8adce8b', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/libsbml', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'libsbml', 'package_version': '5.19.0-28', 'project_dirname': 'zlib-ng-compat-mpb', 'project_name': 'zlib-ng-compat-mpb', 'project_owner': 'tuliom', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/tuliom/zlib-ng-compat-mpb/fedora-rawhide-aarch64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'tuliom/zlib-ng-compat-mpb--tuliom', 'source_json': {}, 'source_type': None, 'submitter': 'tuliom', 'tags': [], 'task_id': '6408371-fedora-rawhide-aarch64', 'timeout': 115200, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/libsbml /var/lib/copr-rpmbuild/workspace/workdir-fn9ivemh/libsbml --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/libsbml', '/var/lib/copr-rpmbuild/workspace/workdir-fn9ivemh/libsbml', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-fn9ivemh/libsbml'... Running: git checkout accf9fc25f5353490bda96853ba33b6de8adce8b -- cmd: ['git', 'checkout', 'accf9fc25f5353490bda96853ba33b6de8adce8b', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-fn9ivemh/libsbml rc: 0 stdout: stderr: Note: switching to 'accf9fc25f5353490bda96853ba33b6de8adce8b'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at accf9fc automatic import of libsbml Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-fn9ivemh/libsbml rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading libSBML-5.19.0-core-plus-packages-src.tar.gz INFO: Reading stdout from command: curl --help all /usr/bin/tail: INFO: Calling: curl -H Pragma: -o libSBML-5.19.0-core-plus-packages-src.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/tuliom/zlib-ng-compat-mpb/libsbml/libSBML-5.19.0-core-plus-packages-src.tar.gz/md5/f6fdfff78e2408b31dce564647b78b1c/libSBML-5.19.0-core-plus-packages-src.tar.gz /var/lib/copr-rpmbuild/main.log: file truncated % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 15.5M 100 15.5M 0 0 40.8M 0 --:--:-- --:--:-- --:--:-- 40.8M INFO: Reading stdout from command: md5sum libSBML-5.19.0-core-plus-packages-src.tar.gz INFO: Downloading libSBML-5.19.0-render-src.zip INFO: Calling: curl -H Pragma: -o libSBML-5.19.0-render-src.zip --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/tuliom/zlib-ng-compat-mpb/libsbml/libSBML-5.19.0-render-src.zip/md5/4e41fa55d280a59adf9c72c85562ea07/libSBML-5.19.0-render-src.zip % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 812k 100 812k 0 0 15.1M 0 --:--:-- --:--:-- --:--:-- 15.2M INFO: Reading stdout from command: md5sum libSBML-5.19.0-render-src.zip Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-fn9ivemh/libsbml/libsbml.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-fn9ivemh/libsbml --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1695203019.034062 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.1.1 starting (python version = 3.11.3, NVR = mock-5.1.1-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-fn9ivemh/libsbml/libsbml.spec) Config(fedora-rawhide-aarch64) Start: clean chroot Finish: clean chroot Mock Version: 5.1.1 INFO: Mock Version: 5.1.1 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1695203019.034062/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1695203019.034062/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/00bf6089d52e143f2330d0941dd8727f9b2b152e5b90cb7c2ad2d06d4146facc/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/00bf6089d52e143f2330d0941dd8727f9b2b152e5b90cb7c2ad2d06d4146facc/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 117 MB/s | 7.7 MB 00:00 fedora 43 MB/s | 69 MB 00:01 Last metadata expiration check: 0:00:02 ago on Wed Sep 20 09:43:47 2023. Package python3-dnf-4.16.2-4.fc40.noarch is already installed. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: python3-dnf-plugins-core noarch 4.4.2-1.fc39 fedora 293 k Installing dependencies: dbus-libs aarch64 1:1.14.10-1.fc40 fedora 156 k python3-dateutil noarch 1:2.8.2-10.fc39 fedora 355 k python3-dbus aarch64 1.3.2-4.fc39 fedora 157 k python3-distro noarch 1.8.0-6.fc39 fedora 49 k python3-six noarch 1.16.0-12.fc39 fedora 41 k python3-systemd aarch64 235-5.fc39 fedora 107 k Transaction Summary ================================================================================ Install 7 Packages Total download size: 1.1 M Installed size: 4.6 M Downloading Packages: (1/7): dbus-libs-1.14.10-1.fc40.aarch64.rpm 7.4 MB/s | 156 kB 00:00 (2/7): python3-dbus-1.3.2-4.fc39.aarch64.rpm 6.4 MB/s | 157 kB 00:00 (3/7): python3-distro-1.8.0-6.fc39.noarch.rpm 14 MB/s | 49 kB 00:00 (4/7): python3-dateutil-2.8.2-10.fc39.noarch.rp 14 MB/s | 355 kB 00:00 (5/7): python3-six-1.16.0-12.fc39.noarch.rpm 23 MB/s | 41 kB 00:00 (6/7): python3-systemd-235-5.fc39.aarch64.rpm 26 MB/s | 107 kB 00:00 (7/7): python3-dnf-plugins-core-4.4.2-1.fc39.no 39 MB/s | 293 kB 00:00 -------------------------------------------------------------------------------- Total 8.0 MB/s | 1.1 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python3-systemd-235-5.fc39.aarch64 1/7 Installing : python3-six-1.16.0-12.fc39.noarch 2/7 Installing : python3-dateutil-1:2.8.2-10.fc39.noarch 3/7 Installing : python3-distro-1.8.0-6.fc39.noarch 4/7 Installing : dbus-libs-1:1.14.10-1.fc40.aarch64 5/7 Installing : python3-dbus-1.3.2-4.fc39.aarch64 6/7 Installing : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 7/7 Running scriptlet: python3-dnf-plugins-core-4.4.2-1.fc39.noarch 7/7 Verifying : dbus-libs-1:1.14.10-1.fc40.aarch64 1/7 Verifying : python3-dateutil-1:2.8.2-10.fc39.noarch 2/7 Verifying : python3-dbus-1.3.2-4.fc39.aarch64 3/7 Verifying : python3-distro-1.8.0-6.fc39.noarch 4/7 Verifying : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 5/7 Verifying : python3-six-1.16.0-12.fc39.noarch 6/7 Verifying : python3-systemd-235-5.fc39.aarch64 7/7 Installed: dbus-libs-1:1.14.10-1.fc40.aarch64 python3-dateutil-1:2.8.2-10.fc39.noarch python3-dbus-1.3.2-4.fc39.aarch64 python3-distro-1.8.0-6.fc39.noarch python3-dnf-plugins-core-4.4.2-1.fc39.noarch python3-six-1.16.0-12.fc39.noarch python3-systemd-235-5.fc39.aarch64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1695203019.034062/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 127 MB/s | 7.7 MB 00:00 fedora 52 MB/s | 69 MB 00:01 Last metadata expiration check: 0:00:02 ago on Wed Sep 20 09:44:11 2023. Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash aarch64 5.2.15-5.fc39 fedora 1.8 M bzip2 aarch64 1.0.8-16.fc39 fedora 52 k coreutils aarch64 9.4-1.fc40 fedora 1.2 M cpio aarch64 2.14-4.fc39 fedora 277 k diffutils aarch64 3.10-3.fc39 fedora 396 k fedora-release-common noarch 40-0.7 fedora 18 k findutils aarch64 1:4.9.0-6.fc40 fedora 495 k gawk aarch64 5.2.2-2.fc39 fedora 1.1 M glibc-minimal-langpack aarch64 2.38.9000-9.fc40 fedora 74 k grep aarch64 3.11-5.fc40 fedora 296 k gzip aarch64 1.12-6.fc39 fedora 164 k info aarch64 7.0.3-3.fc39 fedora 179 k patch aarch64 2.7.6-22.fc39 fedora 123 k redhat-rpm-config noarch 270-1.fc40 copr_base 74 k rpm-build aarch64 4.18.99-1.fc40 copr_base 72 k sed aarch64 4.8-14.fc39 fedora 304 k shadow-utils aarch64 2:4.14.0-1.fc40 fedora 1.3 M tar aarch64 2:1.35-2.fc40 fedora 854 k unzip aarch64 6.0-62.fc39 fedora 183 k util-linux aarch64 2.39.2-1.fc40 copr_base 1.1 M which aarch64 2.21-40.fc39 fedora 42 k xz aarch64 5.4.4-1.fc39 fedora 556 k Installing dependencies: alternatives aarch64 1.25-1.fc39 fedora 38 k ansible-srpm-macros noarch 1-11.fc39 fedora 21 k audit-libs aarch64 3.1.2-4.fc40 fedora 118 k authselect aarch64 1.4.2-3.fc39 fedora 144 k authselect-libs aarch64 1.4.2-3.fc39 fedora 249 k basesystem noarch 11-18.fc39 fedora 7.2 k binutils aarch64 2.41-5.fc40 fedora 6.7 M binutils-gold aarch64 2.41-5.fc40 fedora 948 k bzip2-libs aarch64 1.0.8-16.fc39 fedora 43 k ca-certificates noarch 2023.2.60_v7.0.306-3.fc40 fedora 837 k coreutils-common aarch64 9.4-1.fc40 fedora 2.1 M cracklib aarch64 2.9.11-2.fc40 copr_base 84 k crypto-policies noarch 20230731-1.git5ed06e0.fc39 fedora 99 k curl aarch64 8.3.0-1.fc40 copr_base 350 k cyrus-sasl-lib aarch64 2.1.28-11.fc40 copr_base 781 k debugedit aarch64 5.0-10.fc39 fedora 77 k dwz aarch64 0.15-3.fc39 fedora 136 k ed aarch64 1.19-4.fc39 fedora 78 k efi-srpm-macros noarch 5-9.fc39 fedora 22 k elfutils aarch64 0.189-6.fc40 fedora 539 k elfutils-debuginfod-client aarch64 0.189-6.fc40 fedora 38 k elfutils-default-yama-scope noarch 0.189-6.fc40 fedora 13 k elfutils-libelf aarch64 0.189-6.fc40 fedora 194 k elfutils-libs aarch64 0.189-6.fc40 fedora 258 k fedora-gpg-keys noarch 40-0.1 fedora 130 k fedora-release noarch 40-0.7 fedora 8.0 k fedora-release-identity-basic noarch 40-0.7 fedora 8.8 k fedora-repos noarch 40-0.1 fedora 9.4 k fedora-repos-rawhide noarch 40-0.1 fedora 9.0 k file aarch64 5.45-1.fc40 copr_base 50 k file-libs aarch64 5.45-1.fc40 copr_base 762 k filesystem aarch64 3.18-6.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 26 k forge-srpm-macros noarch 0.1.0-1.fc40 fedora 18 k fpc-srpm-macros noarch 1.3-8.fc39 fedora 7.4 k gdb-minimal aarch64 13.2-9.fc40 fedora 3.8 M gdbm-libs aarch64 1:1.23-4.fc39 fedora 56 k ghc-srpm-macros noarch 1.6.1-2.fc39 fedora 7.8 k glibc aarch64 2.38.9000-9.fc40 fedora 1.7 M glibc-common aarch64 2.38.9000-9.fc40 fedora 351 k glibc-gconv-extra aarch64 2.38.9000-9.fc40 fedora 2.0 M gmp aarch64 1:6.2.1-5.fc39 fedora 266 k gnat-srpm-macros noarch 6-3.fc39 fedora 8.8 k go-srpm-macros noarch 3.2.0-7.fc40 fedora 27 k jansson aarch64 2.13.1-7.fc39 fedora 46 k kernel-srpm-macros noarch 1.0-20.fc39 fedora 10 k keyutils-libs aarch64 1.6.1-7.fc39 fedora 31 k krb5-libs aarch64 1.21.2-1.fc40 fedora 772 k libacl aarch64 2.3.1-9.fc40 fedora 23 k libarchive aarch64 3.7.2-1.fc40 copr_base 403 k libattr aarch64 2.5.1-9.fc40 fedora 18 k libblkid aarch64 2.39.2-1.fc40 copr_base 116 k libbrotli aarch64 1.1.0-1.fc40 fedora 344 k libcap aarch64 2.48-7.fc39 fedora 68 k libcap-ng aarch64 0.8.3-8.fc40 fedora 32 k libcom_err aarch64 1.47.0-2.fc39 fedora 26 k libcurl aarch64 8.3.0-1.fc40 copr_base 337 k libdb aarch64 5.3.28-58.fc40 copr_base 735 k libeconf aarch64 0.5.2-1.fc40 fedora 30 k libevent aarch64 2.1.12-9.fc39 fedora 254 k libfdisk aarch64 2.39.2-1.fc40 copr_base 158 k libffi aarch64 3.4.4-4.fc39 fedora 38 k libgcc aarch64 13.2.1-1.fc40 copr_base 94 k libgomp aarch64 13.2.1-1.fc40 copr_base 311 k libidn2 aarch64 2.3.4-3.fc39 fedora 118 k libmount aarch64 2.39.2-1.fc40 copr_base 153 k libnghttp2 aarch64 1.56.0-1.fc40 copr_base 76 k libnsl2 aarch64 2.0.0-6.fc39 fedora 30 k libpkgconf aarch64 1.9.5-2.fc39 fedora 38 k libpsl aarch64 0.21.2-4.fc39 fedora 63 k libpwquality aarch64 1.4.5-6.fc39 fedora 120 k libselinux aarch64 3.5-5.fc39 fedora 86 k libsemanage aarch64 3.5-4.fc39 fedora 117 k libsepol aarch64 3.5-2.fc39 fedora 311 k libsigsegv aarch64 2.14-5.fc39 fedora 27 k libsmartcols aarch64 2.39.2-1.fc40 copr_base 66 k libssh aarch64 0.10.5-2.fc40 copr_base 212 k libssh-config noarch 0.10.5-2.fc40 copr_base 9.7 k libstdc++ aarch64 13.2.1-1.fc40 copr_base 810 k libtasn1 aarch64 4.19.0-3.fc39 fedora 73 k libtirpc aarch64 1.3.3-1.rc2.fc39 fedora 95 k libunistring aarch64 1.1-5.fc40 fedora 540 k libutempter aarch64 1.2.1-10.fc39 fedora 27 k libuuid aarch64 2.39.2-1.fc40 copr_base 28 k libverto aarch64 0.3.2-6.fc39 fedora 21 k libxcrypt aarch64 4.4.36-2.fc39 fedora 123 k libxml2 aarch64 2.11.5-1.fc40 copr_base 687 k libzstd aarch64 1.5.5-4.fc40 copr_base 281 k lua-libs aarch64 5.4.6-3.fc39 fedora 131 k lua-srpm-macros noarch 1-9.fc39 fedora 8.6 k lz4-libs aarch64 1.9.4-4.fc39 fedora 68 k mpfr aarch64 4.2.0-3.fc39 fedora 319 k ncurses-base noarch 6.4-7.20230520.fc40 fedora 88 k ncurses-libs aarch64 6.4-7.20230520.fc40 fedora 326 k ocaml-srpm-macros noarch 8-2.fc39 fedora 14 k openblas-srpm-macros noarch 2-14.fc39 fedora 7.5 k openldap aarch64 2.6.6-1.fc39 fedora 251 k openssl-libs aarch64 1:3.1.1-4.fc40 copr_base 2.0 M p11-kit aarch64 0.25.0-2.fc39 fedora 481 k p11-kit-trust aarch64 0.25.0-2.fc39 fedora 140 k package-notes-srpm-macros noarch 0.5-9.fc39 fedora 11 k pam aarch64 1.5.3-2.fc39 fedora 558 k pam-libs aarch64 1.5.3-2.fc39 fedora 58 k pcre2 aarch64 10.42-1.fc39.2 fedora 219 k pcre2-syntax noarch 10.42-1.fc39.2 fedora 143 k perl-srpm-macros noarch 1-51.fc39 fedora 8.0 k pkgconf aarch64 1.9.5-2.fc39 fedora 42 k pkgconf-m4 noarch 1.9.5-2.fc39 fedora 14 k pkgconf-pkg-config aarch64 1.9.5-2.fc39 fedora 9.6 k popt aarch64 1.19-3.fc39 fedora 66 k publicsuffix-list-dafsa noarch 20230812-1.fc40 fedora 57 k pyproject-srpm-macros noarch 1.9.0-2.fc39 fedora 14 k python-srpm-macros noarch 3.12-4.fc40 fedora 25 k qt5-srpm-macros noarch 5.15.10-2.fc39 fedora 8.3 k qt6-srpm-macros noarch 6.5.2-2.fc39 fedora 9.2 k readline aarch64 8.2-4.fc39 fedora 211 k rpm aarch64 4.18.99-1.fc40 copr_base 509 k rpm-build-libs aarch64 4.18.99-1.fc40 copr_base 92 k rpm-libs aarch64 4.18.99-1.fc40 copr_base 306 k rpm-sequoia aarch64 1.5.0-1.fc40 fedora 842 k rust-srpm-macros noarch 24-5.fc40 fedora 12 k setup noarch 2.14.4-1.fc39 fedora 154 k sqlite-libs aarch64 3.43.1-1.fc40 fedora 679 k systemd-libs aarch64 254.2-7.fc40 fedora 668 k tzdata noarch 2023c-3.fc40 fedora 718 k util-linux-core aarch64 2.39.2-1.fc40 copr_base 477 k xxhash-libs aarch64 0.8.2-1.fc39 fedora 35 k xz-libs aarch64 5.4.4-1.fc39 fedora 106 k zip aarch64 3.0-39.fc40 fedora 262 k zlib-ng-compat aarch64 2.1.3-4.fc40 copr_base 66 k zstd aarch64 1.5.5-4.fc40 copr_base 446 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 153 Packages Total download size: 53 M Installed size: 304 M Downloading Packages: (1/153): cracklib-2.9.11-2.fc40.aarch64.rpm 4.9 MB/s | 84 kB 00:00 (2/153): file-5.45-1.fc40.aarch64.rpm 43 MB/s | 50 kB 00:00 (3/153): curl-8.3.0-1.fc40.aarch64.rpm 17 MB/s | 350 kB 00:00 (4/153): file-libs-5.45-1.fc40.aarch64.rpm 175 MB/s | 762 kB 00:00 (5/153): libarchive-3.7.2-1.fc40.aarch64.rpm 116 MB/s | 403 kB 00:00 (6/153): cyrus-sasl-lib-2.1.28-11.fc40.aarch64. 30 MB/s | 781 kB 00:00 (7/153): libblkid-2.39.2-1.fc40.aarch64.rpm 68 MB/s | 116 kB 00:00 (8/153): libcurl-8.3.0-1.fc40.aarch64.rpm 120 MB/s | 337 kB 00:00 (9/153): libdb-5.3.28-58.fc40.aarch64.rpm 189 MB/s | 735 kB 00:00 (10/153): libfdisk-2.39.2-1.fc40.aarch64.rpm 46 MB/s | 158 kB 00:00 (11/153): libgcc-13.2.1-1.fc40.aarch64.rpm 25 MB/s | 94 kB 00:00 (12/153): libgomp-13.2.1-1.fc40.aarch64.rpm 131 MB/s | 311 kB 00:00 (13/153): libmount-2.39.2-1.fc40.aarch64.rpm 58 MB/s | 153 kB 00:00 (14/153): libnghttp2-1.56.0-1.fc40.aarch64.rpm 43 MB/s | 76 kB 00:00 (15/153): libsmartcols-2.39.2-1.fc40.aarch64.rp 45 MB/s | 66 kB 00:00 (16/153): libssh-0.10.5-2.fc40.aarch64.rpm 93 MB/s | 212 kB 00:00 (17/153): libssh-config-0.10.5-2.fc40.noarch.rp 4.3 MB/s | 9.7 kB 00:00 (18/153): libstdc++-13.2.1-1.fc40.aarch64.rpm 184 MB/s | 810 kB 00:00 (19/153): libuuid-2.39.2-1.fc40.aarch64.rpm 6.4 MB/s | 28 kB 00:00 (20/153): libxml2-2.11.5-1.fc40.aarch64.rpm 145 MB/s | 687 kB 00:00 (21/153): libzstd-1.5.5-4.fc40.aarch64.rpm 133 MB/s | 281 kB 00:00 (22/153): redhat-rpm-config-270-1.fc40.noarch.r 25 MB/s | 74 kB 00:00 (23/153): rpm-build-4.18.99-1.fc40.aarch64.rpm 30 MB/s | 72 kB 00:00 (24/153): openssl-libs-3.1.1-4.fc40.aarch64.rpm 213 MB/s | 2.0 MB 00:00 (25/153): rpm-build-libs-4.18.99-1.fc40.aarch64 24 MB/s | 92 kB 00:00 (26/153): rpm-libs-4.18.99-1.fc40.aarch64.rpm 62 MB/s | 306 kB 00:00 (27/153): util-linux-2.39.2-1.fc40.aarch64.rpm 191 MB/s | 1.1 MB 00:00 (28/153): rpm-4.18.99-1.fc40.aarch64.rpm 28 MB/s | 509 kB 00:00 (29/153): util-linux-core-2.39.2-1.fc40.aarch64 141 MB/s | 477 kB 00:00 (30/153): zlib-ng-compat-2.1.3-4.fc40.aarch64.r 34 MB/s | 66 kB 00:00 (31/153): zstd-1.5.5-4.fc40.aarch64.rpm 136 MB/s | 446 kB 00:00 (32/153): alternatives-1.25-1.fc39.aarch64.rpm 4.1 MB/s | 38 kB 00:00 (33/153): ansible-srpm-macros-1-11.fc39.noarch. 2.1 MB/s | 21 kB 00:00 (34/153): authselect-1.4.2-3.fc39.aarch64.rpm 20 MB/s | 144 kB 00:00 (35/153): audit-libs-3.1.2-4.fc40.aarch64.rpm 8.5 MB/s | 118 kB 00:00 (36/153): authselect-libs-1.4.2-3.fc39.aarch64. 32 MB/s | 249 kB 00:00 (37/153): basesystem-11-18.fc39.noarch.rpm 633 kB/s | 7.2 kB 00:00 (38/153): binutils-gold-2.41-5.fc40.aarch64.rpm 1.4 MB/s | 948 kB 00:00 (39/153): bzip2-1.0.8-16.fc39.aarch64.rpm 1.1 MB/s | 52 kB 00:00 (40/153): bzip2-libs-1.0.8-16.fc39.aarch64.rpm 13 MB/s | 43 kB 00:00 (41/153): ca-certificates-2023.2.60_v7.0.306-3. 45 MB/s | 837 kB 00:00 (42/153): coreutils-9.4-1.fc40.aarch64.rpm 40 MB/s | 1.2 MB 00:00 (43/153): coreutils-common-9.4-1.fc40.aarch64.r 37 MB/s | 2.1 MB 00:00 (44/153): cpio-2.14-4.fc39.aarch64.rpm 39 MB/s | 277 kB 00:00 (45/153): crypto-policies-20230731-1.git5ed06e0 22 MB/s | 99 kB 00:00 (46/153): debugedit-5.0-10.fc39.aarch64.rpm 6.8 MB/s | 77 kB 00:00 (47/153): diffutils-3.10-3.fc39.aarch64.rpm 44 MB/s | 396 kB 00:00 (48/153): dwz-0.15-3.fc39.aarch64.rpm 29 MB/s | 136 kB 00:00 (49/153): ed-1.19-4.fc39.aarch64.rpm 1.4 MB/s | 78 kB 00:00 (50/153): efi-srpm-macros-5-9.fc39.noarch.rpm 7.5 MB/s | 22 kB 00:00 (51/153): elfutils-0.189-6.fc40.aarch64.rpm 49 MB/s | 539 kB 00:00 (52/153): elfutils-debuginfod-client-0.189-6.fc 12 MB/s | 38 kB 00:00 (53/153): elfutils-default-yama-scope-0.189-6.f 4.8 MB/s | 13 kB 00:00 (54/153): elfutils-libelf-0.189-6.fc40.aarch64. 34 MB/s | 194 kB 00:00 (55/153): elfutils-libs-0.189-6.fc40.aarch64.rp 36 MB/s | 258 kB 00:00 (56/153): fedora-gpg-keys-40-0.1.noarch.rpm 1.5 MB/s | 130 kB 00:00 (57/153): fedora-release-40-0.7.noarch.rpm 3.4 MB/s | 8.0 kB 00:00 (58/153): fedora-release-common-40-0.7.noarch.r 8.0 MB/s | 18 kB 00:00 (59/153): fedora-release-identity-basic-40-0.7. 4.1 MB/s | 8.8 kB 00:00 (60/153): fedora-repos-40-0.1.noarch.rpm 4.6 MB/s | 9.4 kB 00:00 (61/153): fedora-repos-rawhide-40-0.1.noarch.rp 4.8 MB/s | 9.0 kB 00:00 (62/153): filesystem-3.18-6.fc39.aarch64.rpm 24 MB/s | 1.1 MB 00:00 (63/153): findutils-4.9.0-6.fc40.aarch64.rpm 21 MB/s | 495 kB 00:00 (64/153): fonts-srpm-macros-2.0.5-12.fc39.noarc 9.7 MB/s | 26 kB 00:00 (65/153): forge-srpm-macros-0.1.0-1.fc40.noarch 7.2 MB/s | 18 kB 00:00 (66/153): fpc-srpm-macros-1.3-8.fc39.noarch.rpm 709 kB/s | 7.4 kB 00:00 (67/153): gawk-5.2.2-2.fc39.aarch64.rpm 49 MB/s | 1.1 MB 00:00 (68/153): gdb-minimal-13.2-9.fc40.aarch64.rpm 55 MB/s | 3.8 MB 00:00 (69/153): gdbm-libs-1.23-4.fc39.aarch64.rpm 18 MB/s | 56 kB 00:00 (70/153): ghc-srpm-macros-1.6.1-2.fc39.noarch.r 2.4 MB/s | 7.8 kB 00:00 (71/153): bash-5.2.15-5.fc39.aarch64.rpm 1.4 MB/s | 1.8 MB 00:01 (72/153): glibc-common-2.38.9000-9.fc40.aarch64 35 MB/s | 351 kB 00:00 (73/153): glibc-2.38.9000-9.fc40.aarch64.rpm 47 MB/s | 1.7 MB 00:00 (74/153): glibc-minimal-langpack-2.38.9000-9.fc 19 MB/s | 74 kB 00:00 (75/153): gmp-6.2.1-5.fc39.aarch64.rpm 43 MB/s | 266 kB 00:00 (76/153): gnat-srpm-macros-6-3.fc39.noarch.rpm 4.3 MB/s | 8.8 kB 00:00 (77/153): go-srpm-macros-3.2.0-7.fc40.noarch.rp 9.3 MB/s | 27 kB 00:00 (78/153): grep-3.11-5.fc40.aarch64.rpm 38 MB/s | 296 kB 00:00 (79/153): gzip-1.12-6.fc39.aarch64.rpm 24 MB/s | 164 kB 00:00 (80/153): info-7.0.3-3.fc39.aarch64.rpm 1.7 MB/s | 179 kB 00:00 (81/153): jansson-2.13.1-7.fc39.aarch64.rpm 6.0 MB/s | 46 kB 00:00 (82/153): kernel-srpm-macros-1.0-20.fc39.noarch 3.6 MB/s | 10 kB 00:00 (83/153): keyutils-libs-1.6.1-7.fc39.aarch64.rp 10 MB/s | 31 kB 00:00 (84/153): glibc-gconv-extra-2.38.9000-9.fc40.aa 8.4 MB/s | 2.0 MB 00:00 (85/153): libacl-2.3.1-9.fc40.aarch64.rpm 8.2 MB/s | 23 kB 00:00 (86/153): libattr-2.5.1-9.fc40.aarch64.rpm 6.8 MB/s | 18 kB 00:00 (87/153): libbrotli-1.1.0-1.fc40.aarch64.rpm 36 MB/s | 344 kB 00:00 (88/153): libcap-2.48-7.fc39.aarch64.rpm 1.1 MB/s | 68 kB 00:00 (89/153): libcap-ng-0.8.3-8.fc40.aarch64.rpm 1.1 MB/s | 32 kB 00:00 (90/153): libcom_err-1.47.0-2.fc39.aarch64.rpm 1.5 MB/s | 26 kB 00:00 (91/153): libeconf-0.5.2-1.fc40.aarch64.rpm 11 MB/s | 30 kB 00:00 (92/153): libevent-2.1.12-9.fc39.aarch64.rpm 26 MB/s | 254 kB 00:00 (93/153): libffi-3.4.4-4.fc39.aarch64.rpm 11 MB/s | 38 kB 00:00 (94/153): libidn2-2.3.4-3.fc39.aarch64.rpm 23 MB/s | 118 kB 00:00 (95/153): libnsl2-2.0.0-6.fc39.aarch64.rpm 9.9 MB/s | 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lua-srpm-macros-1-9.fc39.noarch.rpm 3.1 MB/s | 8.6 kB 00:00 (111/153): lz4-libs-1.9.4-4.fc39.aarch64.rpm 18 MB/s | 68 kB 00:00 (112/153): krb5-libs-1.21.2-1.fc40.aarch64.rpm 1.5 MB/s | 772 kB 00:00 (113/153): mpfr-4.2.0-3.fc39.aarch64.rpm 36 MB/s | 319 kB 00:00 (114/153): ncurses-base-6.4-7.20230520.fc40.noa 22 MB/s | 88 kB 00:00 (115/153): ocaml-srpm-macros-8-2.fc39.noarch.rp 5.3 MB/s | 14 kB 00:00 (116/153): openblas-srpm-macros-2-14.fc39.noarc 2.3 MB/s | 7.5 kB 00:00 (117/153): ncurses-libs-6.4-7.20230520.fc40.aar 31 MB/s | 326 kB 00:00 (118/153): openldap-2.6.6-1.fc39.aarch64.rpm 24 MB/s | 251 kB 00:00 (119/153): p11-kit-0.25.0-2.fc39.aarch64.rpm 36 MB/s | 481 kB 00:00 (120/153): p11-kit-trust-0.25.0-2.fc39.aarch64. 21 MB/s | 140 kB 00:00 (121/153): package-notes-srpm-macros-0.5-9.fc39 4.4 MB/s | 11 kB 00:00 (122/153): pam-libs-1.5.3-2.fc39.aarch64.rpm 9.9 MB/s | 58 kB 00:00 (123/153): patch-2.7.6-22.fc39.aarch64.rpm 23 MB/s | 123 kB 00:00 (124/153): pam-1.5.3-2.fc39.aarch64.rpm 36 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(139/153): rpm-sequoia-1.5.0-1.fc40.aarch64.rpm 51 MB/s | 842 kB 00:00 (140/153): setup-2.14.4-1.fc39.noarch.rpm 1.3 MB/s | 154 kB 00:00 (141/153): shadow-utils-4.14.0-1.fc40.aarch64.r 44 MB/s | 1.3 MB 00:00 (142/153): sqlite-libs-3.43.1-1.fc40.aarch64.rp 47 MB/s | 679 kB 00:00 (143/153): sed-4.8-14.fc39.aarch64.rpm 1.0 MB/s | 304 kB 00:00 (144/153): tar-1.35-2.fc40.aarch64.rpm 43 MB/s | 854 kB 00:00 (145/153): tzdata-2023c-3.fc40.noarch.rpm 46 MB/s | 718 kB 00:00 (146/153): unzip-6.0-62.fc39.aarch64.rpm 24 MB/s | 183 kB 00:00 (147/153): which-2.21-40.fc39.aarch64.rpm 12 MB/s | 42 kB 00:00 (148/153): xxhash-libs-0.8.2-1.fc39.aarch64.rpm 14 MB/s | 35 kB 00:00 (149/153): xz-5.4.4-1.fc39.aarch64.rpm 46 MB/s | 556 kB 00:00 (150/153): xz-libs-5.4.4-1.fc39.aarch64.rpm 28 MB/s | 106 kB 00:00 (151/153): zip-3.0-39.fc40.aarch64.rpm 39 MB/s | 262 kB 00:00 (152/153): systemd-libs-254.2-7.fc40.aarch64.rp 1.3 MB/s | 668 kB 00:00 (153/153): binutils-2.41-5.fc40.aarch64.rpm 1.4 MB/s | 6.7 MB 00:04 -------------------------------------------------------------------------------- Total 11 MB/s | 53 MB 00:04 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xA15B79CC: Userid : "Fedora (40) " Fingerprint: 115D F9AE F857 853E E844 5D0A 0727 707E A15B 79CC From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary (0xA15B79CC) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-6.fc39.aarch64 1/1 Preparing : 1/1 Installing : libgcc-13.2.1-1.fc40.aarch64 1/153 Running scriptlet: libgcc-13.2.1-1.fc40.aarch64 1/153 Installing : crypto-policies-20230731-1.git5ed06e0.fc39.noarc 2/153 Running scriptlet: crypto-policies-20230731-1.git5ed06e0.fc39.noarc 2/153 Installing : tzdata-2023c-3.fc40.noarch 3/153 Installing : fedora-release-identity-basic-40-0.7.noarch 4/153 Installing : fedora-repos-rawhide-40-0.1.noarch 5/153 Installing : fedora-gpg-keys-40-0.1.noarch 6/153 Installing : fedora-repos-40-0.1.noarch 7/153 Installing : fedora-release-common-40-0.7.noarch 8/153 Installing : fedora-release-40-0.7.noarch 9/153 Installing : setup-2.14.4-1.fc39.noarch 10/153 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.4-1.fc39.noarch 10/153 Installing : filesystem-3.18-6.fc39.aarch64 11/153 Installing : basesystem-11-18.fc39.noarch 12/153 Installing : rust-srpm-macros-24-5.fc40.noarch 13/153 Installing : qt6-srpm-macros-6.5.2-2.fc39.noarch 14/153 Installing : qt5-srpm-macros-5.15.10-2.fc39.noarch 15/153 Installing : pyproject-srpm-macros-1.9.0-2.fc39.noarch 16/153 Installing : publicsuffix-list-dafsa-20230812-1.fc40.noarch 17/153 Installing : pkgconf-m4-1.9.5-2.fc39.noarch 18/153 Installing : perl-srpm-macros-1-51.fc39.noarch 19/153 Installing : pcre2-syntax-10.42-1.fc39.2.noarch 20/153 Installing : package-notes-srpm-macros-0.5-9.fc39.noarch 21/153 Installing : openblas-srpm-macros-2-14.fc39.noarch 22/153 Installing : ocaml-srpm-macros-8-2.fc39.noarch 23/153 Installing : ncurses-base-6.4-7.20230520.fc40.noarch 24/153 Installing : glibc-gconv-extra-2.38.9000-9.fc40.aarch64 25/153 Running scriptlet: glibc-gconv-extra-2.38.9000-9.fc40.aarch64 25/153 Installing : glibc-minimal-langpack-2.38.9000-9.fc40.aarch64 26/153 Installing : glibc-common-2.38.9000-9.fc40.aarch64 27/153 Running scriptlet: glibc-2.38.9000-9.fc40.aarch64 28/153 Installing : glibc-2.38.9000-9.fc40.aarch64 28/153 Running scriptlet: glibc-2.38.9000-9.fc40.aarch64 28/153 Installing : ncurses-libs-6.4-7.20230520.fc40.aarch64 29/153 Installing : bash-5.2.15-5.fc39.aarch64 30/153 Running scriptlet: bash-5.2.15-5.fc39.aarch64 30/153 Installing : zlib-ng-compat-2.1.3-4.fc40.aarch64 31/153 Installing : xz-libs-5.4.4-1.fc39.aarch64 32/153 Installing : bzip2-libs-1.0.8-16.fc39.aarch64 33/153 Installing : libstdc++-13.2.1-1.fc40.aarch64 34/153 Installing : libuuid-2.39.2-1.fc40.aarch64 35/153 Installing : libzstd-1.5.5-4.fc40.aarch64 36/153 Installing : elfutils-libelf-0.189-6.fc40.aarch64 37/153 Installing : popt-1.19-3.fc39.aarch64 38/153 Installing : libblkid-2.39.2-1.fc40.aarch64 39/153 Installing : readline-8.2-4.fc39.aarch64 40/153 Installing : gmp-1:6.2.1-5.fc39.aarch64 41/153 Installing : libattr-2.5.1-9.fc40.aarch64 42/153 Installing : libacl-2.3.1-9.fc40.aarch64 43/153 Installing : libcap-2.48-7.fc39.aarch64 44/153 Installing : libxcrypt-4.4.36-2.fc39.aarch64 45/153 Installing : lz4-libs-1.9.4-4.fc39.aarch64 46/153 Installing : systemd-libs-254.2-7.fc40.aarch64 47/153 Installing : mpfr-4.2.0-3.fc39.aarch64 48/153 Installing : dwz-0.15-3.fc39.aarch64 49/153 Installing : unzip-6.0-62.fc39.aarch64 50/153 Installing : file-libs-5.45-1.fc40.aarch64 51/153 Installing : file-5.45-1.fc40.aarch64 52/153 Installing : libsmartcols-2.39.2-1.fc40.aarch64 53/153 Installing : alternatives-1.25-1.fc39.aarch64 54/153 Installing : jansson-2.13.1-7.fc39.aarch64 55/153 Installing : libcap-ng-0.8.3-8.fc40.aarch64 56/153 Installing : audit-libs-3.1.2-4.fc40.aarch64 57/153 Installing : pam-libs-1.5.3-2.fc39.aarch64 58/153 Installing : libcom_err-1.47.0-2.fc39.aarch64 59/153 Installing : libsepol-3.5-2.fc39.aarch64 60/153 Installing : libunistring-1.1-5.fc40.aarch64 61/153 Installing : libidn2-2.3.4-3.fc39.aarch64 62/153 Installing : lua-libs-5.4.6-3.fc39.aarch64 63/153 Installing : pcre2-10.42-1.fc39.2.aarch64 64/153 Installing : libselinux-3.5-5.fc39.aarch64 65/153 Installing : sed-4.8-14.fc39.aarch64 66/153 Installing : grep-3.11-5.fc40.aarch64 67/153 Installing : findutils-1:4.9.0-6.fc40.aarch64 68/153 Installing : xz-5.4.4-1.fc39.aarch64 69/153 Installing : libmount-2.39.2-1.fc40.aarch64 70/153 Installing : util-linux-core-2.39.2-1.fc40.aarch64 71/153 Installing : libsemanage-3.5-4.fc39.aarch64 72/153 Installing : tar-2:1.35-2.fc40.aarch64 73/153 Installing : libpsl-0.21.2-4.fc39.aarch64 74/153 Installing : zip-3.0-39.fc40.aarch64 75/153 Installing : zstd-1.5.5-4.fc40.aarch64 76/153 Installing : libfdisk-2.39.2-1.fc40.aarch64 77/153 Installing : bzip2-1.0.8-16.fc39.aarch64 78/153 Installing : libxml2-2.11.5-1.fc40.aarch64 79/153 Installing : sqlite-libs-3.43.1-1.fc40.aarch64 80/153 Installing : ed-1.19-4.fc39.aarch64 81/153 Installing : patch-2.7.6-22.fc39.aarch64 82/153 Installing : elfutils-default-yama-scope-0.189-6.fc40.noarch 83/153 Running scriptlet: elfutils-default-yama-scope-0.189-6.fc40.noarch 83/153 Installing : libdb-5.3.28-58.fc40.aarch64 84/153 Installing : libgomp-13.2.1-1.fc40.aarch64 85/153 Installing : libnghttp2-1.56.0-1.fc40.aarch64 86/153 Installing : cpio-2.14-4.fc39.aarch64 87/153 Installing : diffutils-3.10-3.fc39.aarch64 88/153 Installing : gdbm-libs-1:1.23-4.fc39.aarch64 89/153 Installing : cyrus-sasl-lib-2.1.28-11.fc40.aarch64 90/153 Installing : keyutils-libs-1.6.1-7.fc39.aarch64 91/153 Installing : libbrotli-1.1.0-1.fc40.aarch64 92/153 Installing : libeconf-0.5.2-1.fc40.aarch64 93/153 Installing : shadow-utils-2:4.14.0-1.fc40.aarch64 94/153 Running scriptlet: libutempter-1.2.1-10.fc39.aarch64 95/153 Installing : libutempter-1.2.1-10.fc39.aarch64 95/153 Installing : libffi-3.4.4-4.fc39.aarch64 96/153 Installing : p11-kit-0.25.0-2.fc39.aarch64 97/153 Installing : libpkgconf-1.9.5-2.fc39.aarch64 98/153 Installing : pkgconf-1.9.5-2.fc39.aarch64 99/153 Installing : pkgconf-pkg-config-1.9.5-2.fc39.aarch64 100/153 Installing : libsigsegv-2.14-5.fc39.aarch64 101/153 Installing : gawk-5.2.2-2.fc39.aarch64 102/153 Installing : libtasn1-4.19.0-3.fc39.aarch64 103/153 Installing : p11-kit-trust-0.25.0-2.fc39.aarch64 104/153 Running scriptlet: p11-kit-trust-0.25.0-2.fc39.aarch64 104/153 Installing : libverto-0.3.2-6.fc39.aarch64 105/153 Installing : xxhash-libs-0.8.2-1.fc39.aarch64 106/153 Installing : kernel-srpm-macros-1.0-20.fc39.noarch 107/153 Installing : gnat-srpm-macros-6-3.fc39.noarch 108/153 Installing : ghc-srpm-macros-1.6.1-2.fc39.noarch 109/153 Installing : fpc-srpm-macros-1.3-8.fc39.noarch 110/153 Installing : coreutils-common-9.4-1.fc40.aarch64 111/153 Installing : openssl-libs-1:3.1.1-4.fc40.aarch64 112/153 Installing : coreutils-9.4-1.fc40.aarch64 113/153 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 114/153 Installing : ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 114/153 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 114/153 Installing : krb5-libs-1.21.2-1.fc40.aarch64 115/153 Installing : libtirpc-1.3.3-1.rc2.fc39.aarch64 116/153 Running scriptlet: authselect-libs-1.4.2-3.fc39.aarch64 117/153 Installing : authselect-libs-1.4.2-3.fc39.aarch64 117/153 Installing : gzip-1.12-6.fc39.aarch64 118/153 Installing : cracklib-2.9.11-2.fc40.aarch64 119/153 Installing : libpwquality-1.4.5-6.fc39.aarch64 120/153 Installing : authselect-1.4.2-3.fc39.aarch64 121/153 Installing : libnsl2-2.0.0-6.fc39.aarch64 122/153 Installing : pam-1.5.3-2.fc39.aarch64 123/153 Installing : libarchive-3.7.2-1.fc40.aarch64 124/153 Installing : libevent-2.1.12-9.fc39.aarch64 125/153 Installing : openldap-2.6.6-1.fc39.aarch64 126/153 Installing : rpm-sequoia-1.5.0-1.fc40.aarch64 127/153 Installing : rpm-libs-4.18.99-1.fc40.aarch64 128/153 Installing : ansible-srpm-macros-1-11.fc39.noarch 129/153 Installing : libssh-config-0.10.5-2.fc40.noarch 130/153 Installing : libssh-0.10.5-2.fc40.aarch64 131/153 Installing : libcurl-8.3.0-1.fc40.aarch64 132/153 Installing : elfutils-libs-0.189-6.fc40.aarch64 133/153 Installing : elfutils-debuginfod-client-0.189-6.fc40.aarch64 134/153 Installing : binutils-gold-2.41-5.fc40.aarch64 135/153 Running scriptlet: binutils-gold-2.41-5.fc40.aarch64 135/153 Installing : binutils-2.41-5.fc40.aarch64 136/153 Running scriptlet: binutils-2.41-5.fc40.aarch64 136/153 Installing : elfutils-0.189-6.fc40.aarch64 137/153 Installing : gdb-minimal-13.2-9.fc40.aarch64 138/153 Installing : debugedit-5.0-10.fc39.aarch64 139/153 Installing : rpm-build-libs-4.18.99-1.fc40.aarch64 140/153 Installing : curl-8.3.0-1.fc40.aarch64 141/153 Running scriptlet: rpm-4.18.99-1.fc40.aarch64 142/153 Installing : rpm-4.18.99-1.fc40.aarch64 142/153 Installing : efi-srpm-macros-5-9.fc39.noarch 143/153 Installing : lua-srpm-macros-1-9.fc39.noarch 144/153 Installing : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 145/153 Installing : forge-srpm-macros-0.1.0-1.fc40.noarch 146/153 Installing : go-srpm-macros-3.2.0-7.fc40.noarch 147/153 Installing : python-srpm-macros-3.12-4.fc40.noarch 148/153 Installing : redhat-rpm-config-270-1.fc40.noarch 149/153 Installing : rpm-build-4.18.99-1.fc40.aarch64 150/153 Installing : util-linux-2.39.2-1.fc40.aarch64 151/153 Installing : which-2.21-40.fc39.aarch64 152/153 Installing : info-7.0.3-3.fc39.aarch64 153/153 Running scriptlet: filesystem-3.18-6.fc39.aarch64 153/153 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 153/153 Running scriptlet: authselect-libs-1.4.2-3.fc39.aarch64 153/153 Running scriptlet: rpm-4.18.99-1.fc40.aarch64 153/153 Running scriptlet: info-7.0.3-3.fc39.aarch64 153/153 Verifying : cracklib-2.9.11-2.fc40.aarch64 1/153 Verifying : curl-8.3.0-1.fc40.aarch64 2/153 Verifying : cyrus-sasl-lib-2.1.28-11.fc40.aarch64 3/153 Verifying : file-5.45-1.fc40.aarch64 4/153 Verifying : file-libs-5.45-1.fc40.aarch64 5/153 Verifying : libarchive-3.7.2-1.fc40.aarch64 6/153 Verifying : libblkid-2.39.2-1.fc40.aarch64 7/153 Verifying : libcurl-8.3.0-1.fc40.aarch64 8/153 Verifying : libdb-5.3.28-58.fc40.aarch64 9/153 Verifying : libfdisk-2.39.2-1.fc40.aarch64 10/153 Verifying : libgcc-13.2.1-1.fc40.aarch64 11/153 Verifying : libgomp-13.2.1-1.fc40.aarch64 12/153 Verifying : libmount-2.39.2-1.fc40.aarch64 13/153 Verifying : libnghttp2-1.56.0-1.fc40.aarch64 14/153 Verifying : libsmartcols-2.39.2-1.fc40.aarch64 15/153 Verifying : libssh-0.10.5-2.fc40.aarch64 16/153 Verifying : libssh-config-0.10.5-2.fc40.noarch 17/153 Verifying : libstdc++-13.2.1-1.fc40.aarch64 18/153 Verifying : libuuid-2.39.2-1.fc40.aarch64 19/153 Verifying : libxml2-2.11.5-1.fc40.aarch64 20/153 Verifying : libzstd-1.5.5-4.fc40.aarch64 21/153 Verifying : openssl-libs-1:3.1.1-4.fc40.aarch64 22/153 Verifying : redhat-rpm-config-270-1.fc40.noarch 23/153 Verifying : rpm-4.18.99-1.fc40.aarch64 24/153 Verifying : rpm-build-4.18.99-1.fc40.aarch64 25/153 Verifying : rpm-build-libs-4.18.99-1.fc40.aarch64 26/153 Verifying : rpm-libs-4.18.99-1.fc40.aarch64 27/153 Verifying : util-linux-2.39.2-1.fc40.aarch64 28/153 Verifying : util-linux-core-2.39.2-1.fc40.aarch64 29/153 Verifying : zlib-ng-compat-2.1.3-4.fc40.aarch64 30/153 Verifying : zstd-1.5.5-4.fc40.aarch64 31/153 Verifying : alternatives-1.25-1.fc39.aarch64 32/153 Verifying : ansible-srpm-macros-1-11.fc39.noarch 33/153 Verifying : audit-libs-3.1.2-4.fc40.aarch64 34/153 Verifying : authselect-1.4.2-3.fc39.aarch64 35/153 Verifying : authselect-libs-1.4.2-3.fc39.aarch64 36/153 Verifying : basesystem-11-18.fc39.noarch 37/153 Verifying : bash-5.2.15-5.fc39.aarch64 38/153 Verifying : binutils-2.41-5.fc40.aarch64 39/153 Verifying : binutils-gold-2.41-5.fc40.aarch64 40/153 Verifying : bzip2-1.0.8-16.fc39.aarch64 41/153 Verifying : bzip2-libs-1.0.8-16.fc39.aarch64 42/153 Verifying : ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 43/153 Verifying : coreutils-9.4-1.fc40.aarch64 44/153 Verifying : coreutils-common-9.4-1.fc40.aarch64 45/153 Verifying : cpio-2.14-4.fc39.aarch64 46/153 Verifying : crypto-policies-20230731-1.git5ed06e0.fc39.noarc 47/153 Verifying : debugedit-5.0-10.fc39.aarch64 48/153 Verifying : diffutils-3.10-3.fc39.aarch64 49/153 Verifying : dwz-0.15-3.fc39.aarch64 50/153 Verifying : ed-1.19-4.fc39.aarch64 51/153 Verifying : efi-srpm-macros-5-9.fc39.noarch 52/153 Verifying : elfutils-0.189-6.fc40.aarch64 53/153 Verifying : elfutils-debuginfod-client-0.189-6.fc40.aarch64 54/153 Verifying : elfutils-default-yama-scope-0.189-6.fc40.noarch 55/153 Verifying : elfutils-libelf-0.189-6.fc40.aarch64 56/153 Verifying : elfutils-libs-0.189-6.fc40.aarch64 57/153 Verifying : fedora-gpg-keys-40-0.1.noarch 58/153 Verifying : fedora-release-40-0.7.noarch 59/153 Verifying : fedora-release-common-40-0.7.noarch 60/153 Verifying : fedora-release-identity-basic-40-0.7.noarch 61/153 Verifying : fedora-repos-40-0.1.noarch 62/153 Verifying : fedora-repos-rawhide-40-0.1.noarch 63/153 Verifying : filesystem-3.18-6.fc39.aarch64 64/153 Verifying : findutils-1:4.9.0-6.fc40.aarch64 65/153 Verifying : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 66/153 Verifying : forge-srpm-macros-0.1.0-1.fc40.noarch 67/153 Verifying : fpc-srpm-macros-1.3-8.fc39.noarch 68/153 Verifying : gawk-5.2.2-2.fc39.aarch64 69/153 Verifying : gdb-minimal-13.2-9.fc40.aarch64 70/153 Verifying : gdbm-libs-1:1.23-4.fc39.aarch64 71/153 Verifying : ghc-srpm-macros-1.6.1-2.fc39.noarch 72/153 Verifying : glibc-2.38.9000-9.fc40.aarch64 73/153 Verifying : glibc-common-2.38.9000-9.fc40.aarch64 74/153 Verifying : glibc-gconv-extra-2.38.9000-9.fc40.aarch64 75/153 Verifying : glibc-minimal-langpack-2.38.9000-9.fc40.aarch64 76/153 Verifying : gmp-1:6.2.1-5.fc39.aarch64 77/153 Verifying : gnat-srpm-macros-6-3.fc39.noarch 78/153 Verifying : go-srpm-macros-3.2.0-7.fc40.noarch 79/153 Verifying : grep-3.11-5.fc40.aarch64 80/153 Verifying : gzip-1.12-6.fc39.aarch64 81/153 Verifying : info-7.0.3-3.fc39.aarch64 82/153 Verifying : jansson-2.13.1-7.fc39.aarch64 83/153 Verifying : kernel-srpm-macros-1.0-20.fc39.noarch 84/153 Verifying : keyutils-libs-1.6.1-7.fc39.aarch64 85/153 Verifying : krb5-libs-1.21.2-1.fc40.aarch64 86/153 Verifying : libacl-2.3.1-9.fc40.aarch64 87/153 Verifying : libattr-2.5.1-9.fc40.aarch64 88/153 Verifying : libbrotli-1.1.0-1.fc40.aarch64 89/153 Verifying : libcap-2.48-7.fc39.aarch64 90/153 Verifying : libcap-ng-0.8.3-8.fc40.aarch64 91/153 Verifying : libcom_err-1.47.0-2.fc39.aarch64 92/153 Verifying : libeconf-0.5.2-1.fc40.aarch64 93/153 Verifying : libevent-2.1.12-9.fc39.aarch64 94/153 Verifying : libffi-3.4.4-4.fc39.aarch64 95/153 Verifying : libidn2-2.3.4-3.fc39.aarch64 96/153 Verifying : libnsl2-2.0.0-6.fc39.aarch64 97/153 Verifying : libpkgconf-1.9.5-2.fc39.aarch64 98/153 Verifying : libpsl-0.21.2-4.fc39.aarch64 99/153 Verifying : libpwquality-1.4.5-6.fc39.aarch64 100/153 Verifying : libselinux-3.5-5.fc39.aarch64 101/153 Verifying : libsemanage-3.5-4.fc39.aarch64 102/153 Verifying : libsepol-3.5-2.fc39.aarch64 103/153 Verifying : libsigsegv-2.14-5.fc39.aarch64 104/153 Verifying : libtasn1-4.19.0-3.fc39.aarch64 105/153 Verifying : libtirpc-1.3.3-1.rc2.fc39.aarch64 106/153 Verifying : libunistring-1.1-5.fc40.aarch64 107/153 Verifying : libutempter-1.2.1-10.fc39.aarch64 108/153 Verifying : libverto-0.3.2-6.fc39.aarch64 109/153 Verifying : libxcrypt-4.4.36-2.fc39.aarch64 110/153 Verifying : lua-libs-5.4.6-3.fc39.aarch64 111/153 Verifying : lua-srpm-macros-1-9.fc39.noarch 112/153 Verifying : lz4-libs-1.9.4-4.fc39.aarch64 113/153 Verifying : mpfr-4.2.0-3.fc39.aarch64 114/153 Verifying : ncurses-base-6.4-7.20230520.fc40.noarch 115/153 Verifying : ncurses-libs-6.4-7.20230520.fc40.aarch64 116/153 Verifying : ocaml-srpm-macros-8-2.fc39.noarch 117/153 Verifying : openblas-srpm-macros-2-14.fc39.noarch 118/153 Verifying : openldap-2.6.6-1.fc39.aarch64 119/153 Verifying : p11-kit-0.25.0-2.fc39.aarch64 120/153 Verifying : p11-kit-trust-0.25.0-2.fc39.aarch64 121/153 Verifying : package-notes-srpm-macros-0.5-9.fc39.noarch 122/153 Verifying : pam-1.5.3-2.fc39.aarch64 123/153 Verifying : pam-libs-1.5.3-2.fc39.aarch64 124/153 Verifying : patch-2.7.6-22.fc39.aarch64 125/153 Verifying : pcre2-10.42-1.fc39.2.aarch64 126/153 Verifying : pcre2-syntax-10.42-1.fc39.2.noarch 127/153 Verifying : perl-srpm-macros-1-51.fc39.noarch 128/153 Verifying : pkgconf-1.9.5-2.fc39.aarch64 129/153 Verifying : pkgconf-m4-1.9.5-2.fc39.noarch 130/153 Verifying : pkgconf-pkg-config-1.9.5-2.fc39.aarch64 131/153 Verifying : popt-1.19-3.fc39.aarch64 132/153 Verifying : publicsuffix-list-dafsa-20230812-1.fc40.noarch 133/153 Verifying : pyproject-srpm-macros-1.9.0-2.fc39.noarch 134/153 Verifying : python-srpm-macros-3.12-4.fc40.noarch 135/153 Verifying : qt5-srpm-macros-5.15.10-2.fc39.noarch 136/153 Verifying : qt6-srpm-macros-6.5.2-2.fc39.noarch 137/153 Verifying : readline-8.2-4.fc39.aarch64 138/153 Verifying : rpm-sequoia-1.5.0-1.fc40.aarch64 139/153 Verifying : rust-srpm-macros-24-5.fc40.noarch 140/153 Verifying : sed-4.8-14.fc39.aarch64 141/153 Verifying : setup-2.14.4-1.fc39.noarch 142/153 Verifying : shadow-utils-2:4.14.0-1.fc40.aarch64 143/153 Verifying : sqlite-libs-3.43.1-1.fc40.aarch64 144/153 Verifying : systemd-libs-254.2-7.fc40.aarch64 145/153 Verifying : tar-2:1.35-2.fc40.aarch64 146/153 Verifying : tzdata-2023c-3.fc40.noarch 147/153 Verifying : unzip-6.0-62.fc39.aarch64 148/153 Verifying : which-2.21-40.fc39.aarch64 149/153 Verifying : xxhash-libs-0.8.2-1.fc39.aarch64 150/153 Verifying : xz-5.4.4-1.fc39.aarch64 151/153 Verifying : xz-libs-5.4.4-1.fc39.aarch64 152/153 Verifying : zip-3.0-39.fc40.aarch64 153/153 Installed: alternatives-1.25-1.fc39.aarch64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-4.fc40.aarch64 authselect-1.4.2-3.fc39.aarch64 authselect-libs-1.4.2-3.fc39.aarch64 basesystem-11-18.fc39.noarch bash-5.2.15-5.fc39.aarch64 binutils-2.41-5.fc40.aarch64 binutils-gold-2.41-5.fc40.aarch64 bzip2-1.0.8-16.fc39.aarch64 bzip2-libs-1.0.8-16.fc39.aarch64 ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch coreutils-9.4-1.fc40.aarch64 coreutils-common-9.4-1.fc40.aarch64 cpio-2.14-4.fc39.aarch64 cracklib-2.9.11-2.fc40.aarch64 crypto-policies-20230731-1.git5ed06e0.fc39.noarch curl-8.3.0-1.fc40.aarch64 cyrus-sasl-lib-2.1.28-11.fc40.aarch64 debugedit-5.0-10.fc39.aarch64 diffutils-3.10-3.fc39.aarch64 dwz-0.15-3.fc39.aarch64 ed-1.19-4.fc39.aarch64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.189-6.fc40.aarch64 elfutils-debuginfod-client-0.189-6.fc40.aarch64 elfutils-default-yama-scope-0.189-6.fc40.noarch elfutils-libelf-0.189-6.fc40.aarch64 elfutils-libs-0.189-6.fc40.aarch64 fedora-gpg-keys-40-0.1.noarch fedora-release-40-0.7.noarch fedora-release-common-40-0.7.noarch fedora-release-identity-basic-40-0.7.noarch fedora-repos-40-0.1.noarch fedora-repos-rawhide-40-0.1.noarch file-5.45-1.fc40.aarch64 file-libs-5.45-1.fc40.aarch64 filesystem-3.18-6.fc39.aarch64 findutils-1:4.9.0-6.fc40.aarch64 fonts-srpm-macros-1:2.0.5-12.fc39.noarch forge-srpm-macros-0.1.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.aarch64 gdb-minimal-13.2-9.fc40.aarch64 gdbm-libs-1:1.23-4.fc39.aarch64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38.9000-9.fc40.aarch64 glibc-common-2.38.9000-9.fc40.aarch64 glibc-gconv-extra-2.38.9000-9.fc40.aarch64 glibc-minimal-langpack-2.38.9000-9.fc40.aarch64 gmp-1:6.2.1-5.fc39.aarch64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.2.0-7.fc40.noarch grep-3.11-5.fc40.aarch64 gzip-1.12-6.fc39.aarch64 info-7.0.3-3.fc39.aarch64 jansson-2.13.1-7.fc39.aarch64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.aarch64 krb5-libs-1.21.2-1.fc40.aarch64 libacl-2.3.1-9.fc40.aarch64 libarchive-3.7.2-1.fc40.aarch64 libattr-2.5.1-9.fc40.aarch64 libblkid-2.39.2-1.fc40.aarch64 libbrotli-1.1.0-1.fc40.aarch64 libcap-2.48-7.fc39.aarch64 libcap-ng-0.8.3-8.fc40.aarch64 libcom_err-1.47.0-2.fc39.aarch64 libcurl-8.3.0-1.fc40.aarch64 libdb-5.3.28-58.fc40.aarch64 libeconf-0.5.2-1.fc40.aarch64 libevent-2.1.12-9.fc39.aarch64 libfdisk-2.39.2-1.fc40.aarch64 libffi-3.4.4-4.fc39.aarch64 libgcc-13.2.1-1.fc40.aarch64 libgomp-13.2.1-1.fc40.aarch64 libidn2-2.3.4-3.fc39.aarch64 libmount-2.39.2-1.fc40.aarch64 libnghttp2-1.56.0-1.fc40.aarch64 libnsl2-2.0.0-6.fc39.aarch64 libpkgconf-1.9.5-2.fc39.aarch64 libpsl-0.21.2-4.fc39.aarch64 libpwquality-1.4.5-6.fc39.aarch64 libselinux-3.5-5.fc39.aarch64 libsemanage-3.5-4.fc39.aarch64 libsepol-3.5-2.fc39.aarch64 libsigsegv-2.14-5.fc39.aarch64 libsmartcols-2.39.2-1.fc40.aarch64 libssh-0.10.5-2.fc40.aarch64 libssh-config-0.10.5-2.fc40.noarch libstdc++-13.2.1-1.fc40.aarch64 libtasn1-4.19.0-3.fc39.aarch64 libtirpc-1.3.3-1.rc2.fc39.aarch64 libunistring-1.1-5.fc40.aarch64 libutempter-1.2.1-10.fc39.aarch64 libuuid-2.39.2-1.fc40.aarch64 libverto-0.3.2-6.fc39.aarch64 libxcrypt-4.4.36-2.fc39.aarch64 libxml2-2.11.5-1.fc40.aarch64 libzstd-1.5.5-4.fc40.aarch64 lua-libs-5.4.6-3.fc39.aarch64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.aarch64 mpfr-4.2.0-3.fc39.aarch64 ncurses-base-6.4-7.20230520.fc40.noarch ncurses-libs-6.4-7.20230520.fc40.aarch64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.aarch64 openssl-libs-1:3.1.1-4.fc40.aarch64 p11-kit-0.25.0-2.fc39.aarch64 p11-kit-trust-0.25.0-2.fc39.aarch64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-2.fc39.aarch64 pam-libs-1.5.3-2.fc39.aarch64 patch-2.7.6-22.fc39.aarch64 pcre2-10.42-1.fc39.2.aarch64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.aarch64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.aarch64 popt-1.19-3.fc39.aarch64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.9.0-2.fc39.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.10-2.fc39.noarch qt6-srpm-macros-6.5.2-2.fc39.noarch readline-8.2-4.fc39.aarch64 redhat-rpm-config-270-1.fc40.noarch rpm-4.18.99-1.fc40.aarch64 rpm-build-4.18.99-1.fc40.aarch64 rpm-build-libs-4.18.99-1.fc40.aarch64 rpm-libs-4.18.99-1.fc40.aarch64 rpm-sequoia-1.5.0-1.fc40.aarch64 rust-srpm-macros-24-5.fc40.noarch sed-4.8-14.fc39.aarch64 setup-2.14.4-1.fc39.noarch shadow-utils-2:4.14.0-1.fc40.aarch64 sqlite-libs-3.43.1-1.fc40.aarch64 systemd-libs-254.2-7.fc40.aarch64 tar-2:1.35-2.fc40.aarch64 tzdata-2023c-3.fc40.noarch unzip-6.0-62.fc39.aarch64 util-linux-2.39.2-1.fc40.aarch64 util-linux-core-2.39.2-1.fc40.aarch64 which-2.21-40.fc39.aarch64 xxhash-libs-0.8.2-1.fc39.aarch64 xz-5.4.4-1.fc39.aarch64 xz-libs-5.4.4-1.fc39.aarch64 zip-3.0-39.fc40.aarch64 zlib-ng-compat-2.1.3-4.fc40.aarch64 zstd-1.5.5-4.fc40.aarch64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.25-1.fc39.aarch64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-4.fc40.aarch64 authselect-1.4.2-3.fc39.aarch64 authselect-libs-1.4.2-3.fc39.aarch64 basesystem-11-18.fc39.noarch bash-5.2.15-5.fc39.aarch64 binutils-2.41-5.fc40.aarch64 binutils-gold-2.41-5.fc40.aarch64 bzip2-1.0.8-16.fc39.aarch64 bzip2-libs-1.0.8-16.fc39.aarch64 ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch coreutils-9.4-1.fc40.aarch64 coreutils-common-9.4-1.fc40.aarch64 cpio-2.14-4.fc39.aarch64 cracklib-2.9.11-2.fc40.aarch64 crypto-policies-20230731-1.git5ed06e0.fc39.noarch curl-8.3.0-1.fc40.aarch64 cyrus-sasl-lib-2.1.28-11.fc40.aarch64 debugedit-5.0-10.fc39.aarch64 diffutils-3.10-3.fc39.aarch64 dwz-0.15-3.fc39.aarch64 ed-1.19-4.fc39.aarch64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.189-6.fc40.aarch64 elfutils-debuginfod-client-0.189-6.fc40.aarch64 elfutils-default-yama-scope-0.189-6.fc40.noarch elfutils-libelf-0.189-6.fc40.aarch64 elfutils-libs-0.189-6.fc40.aarch64 fedora-gpg-keys-40-0.1.noarch fedora-release-40-0.7.noarch fedora-release-common-40-0.7.noarch fedora-release-identity-basic-40-0.7.noarch fedora-repos-40-0.1.noarch fedora-repos-rawhide-40-0.1.noarch file-5.45-1.fc40.aarch64 file-libs-5.45-1.fc40.aarch64 filesystem-3.18-6.fc39.aarch64 findutils-4.9.0-6.fc40.aarch64 fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.1.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.aarch64 gdb-minimal-13.2-9.fc40.aarch64 gdbm-libs-1.23-4.fc39.aarch64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38.9000-9.fc40.aarch64 glibc-common-2.38.9000-9.fc40.aarch64 glibc-gconv-extra-2.38.9000-9.fc40.aarch64 glibc-minimal-langpack-2.38.9000-9.fc40.aarch64 gmp-6.2.1-5.fc39.aarch64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.2.0-7.fc40.noarch gpg-pubkey-18b8e74c-62f2920f gpg-pubkey-a15b79cc-63d04c2c grep-3.11-5.fc40.aarch64 gzip-1.12-6.fc39.aarch64 info-7.0.3-3.fc39.aarch64 jansson-2.13.1-7.fc39.aarch64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.aarch64 krb5-libs-1.21.2-1.fc40.aarch64 libacl-2.3.1-9.fc40.aarch64 libarchive-3.7.2-1.fc40.aarch64 libattr-2.5.1-9.fc40.aarch64 libblkid-2.39.2-1.fc40.aarch64 libbrotli-1.1.0-1.fc40.aarch64 libcap-2.48-7.fc39.aarch64 libcap-ng-0.8.3-8.fc40.aarch64 libcom_err-1.47.0-2.fc39.aarch64 libcurl-8.3.0-1.fc40.aarch64 libdb-5.3.28-58.fc40.aarch64 libeconf-0.5.2-1.fc40.aarch64 libevent-2.1.12-9.fc39.aarch64 libfdisk-2.39.2-1.fc40.aarch64 libffi-3.4.4-4.fc39.aarch64 libgcc-13.2.1-1.fc40.aarch64 libgomp-13.2.1-1.fc40.aarch64 libidn2-2.3.4-3.fc39.aarch64 libmount-2.39.2-1.fc40.aarch64 libnghttp2-1.56.0-1.fc40.aarch64 libnsl2-2.0.0-6.fc39.aarch64 libpkgconf-1.9.5-2.fc39.aarch64 libpsl-0.21.2-4.fc39.aarch64 libpwquality-1.4.5-6.fc39.aarch64 libselinux-3.5-5.fc39.aarch64 libsemanage-3.5-4.fc39.aarch64 libsepol-3.5-2.fc39.aarch64 libsigsegv-2.14-5.fc39.aarch64 libsmartcols-2.39.2-1.fc40.aarch64 libssh-0.10.5-2.fc40.aarch64 libssh-config-0.10.5-2.fc40.noarch libstdc++-13.2.1-1.fc40.aarch64 libtasn1-4.19.0-3.fc39.aarch64 libtirpc-1.3.3-1.rc2.fc39.aarch64 libunistring-1.1-5.fc40.aarch64 libutempter-1.2.1-10.fc39.aarch64 libuuid-2.39.2-1.fc40.aarch64 libverto-0.3.2-6.fc39.aarch64 libxcrypt-4.4.36-2.fc39.aarch64 libxml2-2.11.5-1.fc40.aarch64 libzstd-1.5.5-4.fc40.aarch64 lua-libs-5.4.6-3.fc39.aarch64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.aarch64 mpfr-4.2.0-3.fc39.aarch64 ncurses-base-6.4-7.20230520.fc40.noarch ncurses-libs-6.4-7.20230520.fc40.aarch64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.aarch64 openssl-libs-3.1.1-4.fc40.aarch64 p11-kit-0.25.0-2.fc39.aarch64 p11-kit-trust-0.25.0-2.fc39.aarch64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-2.fc39.aarch64 pam-libs-1.5.3-2.fc39.aarch64 patch-2.7.6-22.fc39.aarch64 pcre2-10.42-1.fc39.2.aarch64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.aarch64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.aarch64 popt-1.19-3.fc39.aarch64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.9.0-2.fc39.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.10-2.fc39.noarch qt6-srpm-macros-6.5.2-2.fc39.noarch readline-8.2-4.fc39.aarch64 redhat-rpm-config-270-1.fc40.noarch rpm-4.18.99-1.fc40.aarch64 rpm-build-4.18.99-1.fc40.aarch64 rpm-build-libs-4.18.99-1.fc40.aarch64 rpm-libs-4.18.99-1.fc40.aarch64 rpm-sequoia-1.5.0-1.fc40.aarch64 rust-srpm-macros-24-5.fc40.noarch sed-4.8-14.fc39.aarch64 setup-2.14.4-1.fc39.noarch shadow-utils-4.14.0-1.fc40.aarch64 sqlite-libs-3.43.1-1.fc40.aarch64 systemd-libs-254.2-7.fc40.aarch64 tar-1.35-2.fc40.aarch64 tzdata-2023c-3.fc40.noarch unzip-6.0-62.fc39.aarch64 util-linux-2.39.2-1.fc40.aarch64 util-linux-core-2.39.2-1.fc40.aarch64 which-2.21-40.fc39.aarch64 xxhash-libs-0.8.2-1.fc39.aarch64 xz-5.4.4-1.fc39.aarch64 xz-libs-5.4.4-1.fc39.aarch64 zip-3.0-39.fc40.aarch64 zlib-ng-compat-2.1.3-4.fc40.aarch64 zstd-1.5.5-4.fc40.aarch64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1689811200 Wrote: /builddir/build/SRPMS/libsbml-5.19.0-28.fc40.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1695203019.034062/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-aarch64-1695203019.034062/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-aarch64-1695203019.034062/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-fn9ivemh/libsbml/libsbml.spec) Config(child) 1 minutes 7 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/libsbml-5.19.0-28.fc40.src.rpm) Config(fedora-rawhide-aarch64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1695203019.034062/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-aarch64-bootstrap-1695203019.034062/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-aarch64-1695203019.034062/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Finish: chroot init INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.19.0-1.fc40.aarch64 rpm-sequoia-1.5.0-1.fc40.aarch64 python3-dnf-4.16.2-4.fc40.noarch python3-dnf-plugins-core-4.4.2-1.fc39.noarch yum-4.16.2-4.fc40.noarch Start: build phase for libsbml-5.19.0-28.fc40.src.rpm Start: build setup for libsbml-5.19.0-28.fc40.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1689811200 Wrote: /builddir/build/SRPMS/libsbml-5.19.0-28.fc40.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 65 kB/s | 1.5 kB 00:00 Copr repository 133 MB/s | 7.7 MB 00:00 fedora 38 kB/s | 11 kB 00:00 Dependencies resolved. =================================================================================================== Package Arch Version Repo Size =================================================================================================== Installing: R-core-devel aarch64 4.3.1-3.fc40 copr_base 86 k R-devel aarch64 4.3.1-3.fc40 copr_base 11 k bzip2-devel aarch64 1.0.8-16.fc39 fedora 214 k check-devel aarch64 0.15.2-10.fc39 fedora 40 k cmake aarch64 3.27.4-8.fc40 fedora 7.4 M expat-devel aarch64 2.5.0-3.fc39 fedora 52 k hostname aarch64 3.23-9.fc39 fedora 28 k libxml2-devel aarch64 2.11.5-1.fc40 copr_base 498 k minizip-ng-devel aarch64 3.0.7-4.fc40 copr_base 26 k perl-ExtUtils-Embed noarch 1.35-500.fc39 fedora 18 k perl-ExtUtils-MakeMaker noarch 2:7.70-501.fc39 fedora 292 k perl-Test noarch 1.31-500.fc39 fedora 29 k perl-Test-Simple noarch 3:1.302195-5.fc39 fedora 575 k perl-devel aarch64 4:5.38.0-500.fc39 fedora 757 k perl-generators noarch 1.16-3.fc39 fedora 16 k python3-devel aarch64 3.12.0~rc2-1.fc40 fedora 311 k ruby-devel aarch64 3.2.2-181.fc39 fedora 459 k swig aarch64 4.1.1-9.fc39 fedora 1.5 M texlive-collection-latexrecommended noarch 11:svn65512-69.fc39 fedora 12 k zlib-ng-compat-devel aarch64 2.1.3-4.fc40 copr_base 34 k Installing dependencies: R-core aarch64 4.3.1-3.fc40 copr_base 61 M R-java aarch64 4.3.1-3.fc40 copr_base 11 k R-java-devel aarch64 4.3.1-3.fc40 copr_base 11 k R-rpm-macros noarch 1.2.1-7.fc39 fedora 11 k abattis-cantarell-vf-fonts noarch 0.301-10.fc39 fedora 121 k adobe-mappings-cmap noarch 20230622-1.fc39 fedora 2.1 M adobe-mappings-cmap-deprecated noarch 20230622-1.fc39 fedora 113 k adobe-mappings-pdf noarch 20190401-5.fc39 fedora 698 k alsa-lib aarch64 1.2.10-3.fc40 fedora 511 k annobin-docs noarch 12.26-1.fc40 fedora 94 k annobin-plugin-gcc aarch64 12.26-1.fc40 fedora 958 k avahi-libs aarch64 0.8-24.fc39 fedora 67 k biber noarch 2.19-3.fc39 fedora 292 k brotli aarch64 1.1.0-1.fc40 fedora 19 k brotli-devel aarch64 1.1.0-1.fc40 fedora 34 k cairo aarch64 1.17.8-5.fc40 copr_base 689 k check aarch64 0.15.2-10.fc39 fedora 86 k cmake-data noarch 3.27.4-8.fc40 fedora 2.2 M cmake-filesystem aarch64 3.27.4-8.fc40 fedora 19 k cmake-rpm-macros noarch 3.27.4-8.fc40 fedora 18 k copy-jdk-configs noarch 4.1-3.fc39 fedora 28 k cpp aarch64 13.2.1-1.fc40 copr_base 9.7 M crypto-policies-scripts noarch 20230731-1.git5ed06e0.fc39 fedora 115 k cups-libs aarch64 1:2.4.6-6.fc40 copr_base 267 k dbus-libs aarch64 1:1.14.10-1.fc40 fedora 156 k default-fonts-core-sans noarch 4.0-9.fc40 fedora 32 k desktop-file-utils aarch64 0.26-9.fc39 fedora 71 k emacs-filesystem noarch 1:29.1-1.fc40 copr_base 8.9 k expat aarch64 2.5.0-3.fc39 fedora 108 k flexiblas aarch64 3.3.1-5.fc39 fedora 33 k flexiblas-devel aarch64 3.3.1-5.fc39 fedora 116 k flexiblas-netlib aarch64 3.3.1-5.fc39 fedora 2.6 M flexiblas-netlib64 aarch64 3.3.1-5.fc39 fedora 2.5 M flexiblas-openblas-openmp aarch64 3.3.1-5.fc39 fedora 16 k flexiblas-openblas-openmp64 aarch64 3.3.1-5.fc39 fedora 16 k fontconfig aarch64 2.14.2-5.fc40 fedora 301 k fontconfig-devel aarch64 2.14.2-5.fc40 fedora 165 k fonts-filesystem noarch 1:2.0.5-12.fc39 fedora 8.2 k freetype aarch64 2.13.1-2.fc40 copr_base 406 k freetype-devel aarch64 2.13.1-2.fc40 copr_base 913 k fribidi aarch64 1.0.13-2.fc39 fedora 91 k gc aarch64 8.2.2-4.fc39 fedora 110 k gcc aarch64 13.2.1-1.fc40 copr_base 31 M gcc-c++ aarch64 13.2.1-1.fc40 copr_base 12 M gcc-gfortran aarch64 13.2.1-1.fc40 copr_base 11 M gcc-plugin-annobin aarch64 13.2.1-1.fc40 copr_base 47 k gettext aarch64 0.22-2.fc39 fedora 1.1 M gettext-envsubst aarch64 0.22-2.fc39 fedora 36 k gettext-libs aarch64 0.22-2.fc39 fedora 310 k gettext-runtime aarch64 0.22-2.fc39 fedora 119 k ghostscript aarch64 10.01.2-3.fc40 copr_base 33 k ghostscript-tools-fonts aarch64 10.01.2-3.fc40 copr_base 12 k ghostscript-tools-printing aarch64 10.01.2-3.fc40 copr_base 13 k glib2 aarch64 2.78.0-2.fc40 fedora 2.8 M glib2-devel aarch64 2.78.0-2.fc40 fedora 597 k glibc-devel aarch64 2.38.9000-9.fc40 fedora 582 k gnutls aarch64 3.8.1-1.fc40 fedora 1.0 M google-droid-sans-fonts noarch 20200215-17.fc40 fedora 2.7 M google-noto-fonts-common noarch 20230801-3.fc40 fedora 17 k google-noto-sans-vf-fonts noarch 20230801-3.fc40 fedora 583 k graphite2 aarch64 1.3.14-12.fc39 fedora 93 k graphite2-devel aarch64 1.3.14-12.fc39 fedora 20 k groff-base aarch64 1.23.0-2.fc39 fedora 1.1 M guile22 aarch64 2.2.7-9.fc39 fedora 6.5 M harfbuzz aarch64 8.2.0-1.fc40 fedora 933 k harfbuzz-devel aarch64 8.2.0-1.fc40 fedora 450 k harfbuzz-icu aarch64 8.2.0-1.fc40 fedora 17 k java-17-openjdk aarch64 1:17.0.8.0.7-1.fc39 fedora 402 k java-17-openjdk-devel aarch64 1:17.0.8.0.7-1.fc39 fedora 4.7 M java-17-openjdk-headless aarch64 1:17.0.8.0.7-1.fc39 fedora 44 M javapackages-filesystem noarch 6.2.0-3.fc40 fedora 12 k jbig2dec-libs aarch64 0.19-10.fc39 fedora 71 k jbigkit-libs aarch64 2.1-26.fc39 fedora 53 k jsoncpp aarch64 1.9.5-5.fc39 fedora 91 k kernel-headers aarch64 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texlive-fp noarch 11:svn49719-69.fc39 fedora 36 k texlive-fpl noarch 11:svn54512-69.fc39 fedora 302 k texlive-geometry noarch 11:svn61719-69.fc39 fedora 23 k texlive-gettitlestring noarch 11:svn53170-69.fc39 fedora 327 k texlive-glyphlist noarch 11:svn54074-77.fc39 fedora 38 k texlive-graphics noarch 11:svn66204-69.fc39 fedora 40 k texlive-graphics-cfg noarch 11:svn41448-69.fc39 fedora 13 k texlive-graphics-def noarch 11:svn64487-69.fc39 fedora 28 k texlive-grfext noarch 11:svn53024-69.fc39 fedora 317 k texlive-grffile noarch 11:svn52756-69.fc39 fedora 360 k texlive-gsftopk aarch64 11:svn52851-77.fc39 fedora 35 k texlive-helvetic noarch 11:svn61719-69.fc39 fedora 655 k texlive-hobsub noarch 11:svn52810-69.fc39 fedora 77 k texlive-hologo noarch 11:svn61719-69.fc39 fedora 586 k texlive-hopatch noarch 11:svn65491-69.fc39 fedora 328 k texlive-hycolor noarch 11:svn53584-69.fc39 fedora 384 k texlive-hypdoc noarch 11:svn65678-69.fc39 fedora 335 k texlive-hyperref noarch 11:svn65758-69.fc39 fedora 119 k texlive-hyph-utf8 noarch 11:svn61719-69.fc39 fedora 29 k texlive-hyphen-base noarch 11:svn66413-69.fc39 fedora 34 k texlive-hyphenex noarch 11:svn57387-69.fc39 fedora 19 k texlive-ifmtarg noarch 11:svn47544-69.fc39 fedora 15 k texlive-ifplatform noarch 11:svn45533-69.fc39 fedora 16 k texlive-iftex noarch 11:svn61910-69.fc39 fedora 21 k texlive-index noarch 11:svn24099.4.1beta-69.fc39 fedora 23 k texlive-infwarerr noarch 11:svn53023-69.fc39 fedora 295 k texlive-intcalc noarch 11:svn53168-69.fc39 fedora 432 k texlive-jknapltx noarch 11:svn19440.0-69.fc39 fedora 27 k texlive-kastrup noarch 11:svn15878.0-69.fc39 fedora 13 k texlive-knuth-lib noarch 11:svn57963-69.fc39 fedora 52 k texlive-knuth-local noarch 11:svn57963-69.fc39 fedora 45 k texlive-koma-script noarch 11:svn64685-69.fc39 fedora 6.4 M texlive-kpathsea aarch64 11:svn66209-77.fc39 fedora 1.1 M texlive-kvdefinekeys noarch 11:svn53193-69.fc39 fedora 306 k texlive-kvoptions noarch 11:svn63622-69.fc39 fedora 494 k 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texlive-natbib noarch 11:svn20668.8.31b-69.fc39 fedora 31 k texlive-newfloat noarch 11:svn52906-69.fc39 fedora 120 k texlive-notoccite noarch 11:svn18129.0-69.fc39 fedora 13 k texlive-ntgclass noarch 11:svn65522-69.fc39 fedora 34 k texlive-oberdiek noarch 11:svn65521-77.fc39 fedora 7.7 M texlive-pagesel noarch 11:svn56105-69.fc39 fedora 340 k texlive-palatino noarch 11:svn61719-69.fc39 fedora 423 k texlive-paralist noarch 11:svn43021-69.fc39 fedora 18 k texlive-parallel noarch 11:svn15878.0-69.fc39 fedora 18 k texlive-parskip noarch 11:svn58358-69.fc39 fedora 17 k texlive-pdfcol noarch 11:svn64469-69.fc39 fedora 327 k texlive-pdfcolfoot noarch 11:svn65512-69.fc39 fedora 319 k texlive-pdfcolmk noarch 11:svn52912-69.fc39 fedora 18 k texlive-pdfescape noarch 11:svn53082-69.fc39 fedora 353 k texlive-pdflscape noarch 11:svn64851-69.fc39 fedora 324 k texlive-pdfmanagement-testphase noarch 11:svn66532-69.fc39 fedora 8.3 M texlive-pdfpages noarch 11:svn65319-69.fc39 fedora 32 k texlive-pdftex aarch64 11:svn66243-77.fc39 fedora 2.4 M texlive-pdftexcmds noarch 11:svn55777-69.fc39 fedora 391 k texlive-pgf noarch 11:svn65553-69.fc39 fedora 897 k texlive-picture noarch 11:svn54867-69.fc39 fedora 312 k texlive-placeins noarch 11:svn19848.2.2-69.fc39 fedora 13 k texlive-plain noarch 11:svn57963-69.fc39 fedora 48 k texlive-polyglossia noarch 11:svn65792-69.fc39 fedora 220 k texlive-psfrag noarch 11:svn15878.3.04-69.fc39 fedora 15 k texlive-pslatex noarch 11:svn57434-69.fc39 fedora 22 k texlive-psnfss noarch 11:svn54694-69.fc39 fedora 60 k texlive-pspicture noarch 11:svn15878.0-69.fc39 fedora 16 k texlive-pst-3d noarch 11:svn17257.1.10-69.fc39 fedora 18 k texlive-pst-coil noarch 11:svn62977-69.fc39 fedora 18 k texlive-pst-eps noarch 11:svn15878.1.0-69.fc39 fedora 17 k texlive-pst-fill noarch 11:svn60671-69.fc39 fedora 18 k texlive-pst-grad noarch 11:svn15878.1.06-69.fc39 fedora 18 k texlive-pst-math noarch 11:svn64732-69.fc39 fedora 20 k texlive-pst-node noarch 11:svn61838-69.fc39 fedora 40 k texlive-pst-ovl noarch 11:svn54963-69.fc39 fedora 16 k texlive-pst-plot noarch 11:svn65346-69.fc39 fedora 37 k texlive-pst-text noarch 11:svn49542-69.fc39 fedora 19 k texlive-pst-tools noarch 11:svn60621-69.fc39 fedora 21 k texlive-pst-tree noarch 11:svn60421-69.fc39 fedora 21 k texlive-pstricks noarch 11:svn65346-69.fc39 fedora 117 k texlive-pstricks-add noarch 11:svn65067-69.fc39 fedora 37 k texlive-ragged2e noarch 11:svn66152-69.fc39 fedora 682 k texlive-rcs noarch 11:svn15878.0-69.fc39 fedora 28 k texlive-realscripts noarch 11:svn56594-69.fc39 fedora 19 k texlive-refcount noarch 11:svn53164-69.fc39 fedora 335 k texlive-rerunfilecheck noarch 11:svn63869-69.fc39 fedora 341 k texlive-rsfs noarch 11:svn15878.0-69.fc39 fedora 73 k texlive-sansmath noarch 11:svn17997.1.1-69.fc39 fedora 14 k texlive-sansmathaccent noarch 11:svn53628-69.fc39 fedora 36 k texlive-sauerj noarch 11:svn15878.0-69.fc39 fedora 20 k texlive-section noarch 11:svn20180.0-69.fc39 fedora 24 k texlive-seminar noarch 11:svn59801-69.fc39 fedora 52 k texlive-sepnum noarch 11:svn20186.2.0-69.fc39 fedora 17 k texlive-setspace noarch 11:svn65206-69.fc39 fedora 18 k texlive-showexpl noarch 11:svn57414-69.fc39 fedora 18 k texlive-stringenc noarch 11:svn52982-69.fc39 fedora 702 k texlive-subfig noarch 11:svn15878.1.3-69.fc39 fedora 21 k texlive-symbol noarch 11:svn61719-69.fc39 fedora 54 k texlive-tex aarch64 11:svn66186-77.fc39 fedora 203 k texlive-tex-ini-files noarch 11:svn40533-69.fc39 fedora 15 k texlive-texlive-common-doc noarch 11:svn54176-69.fc39 fedora 158 k texlive-texlive-en noarch 11:svn66572-77.fc39 fedora 2.0 M texlive-texlive-msg-translations noarch 11:svn66593-69.fc39 fedora 165 k texlive-texlive-scripts noarch 11:svn66584-77.fc39 fedora 122 k texlive-texlive.infra noarch 11:svn66512-77.fc39 fedora 295 k texlive-textcase noarch 11:svn63868-69.fc39 fedora 16 k texlive-thumbpdf noarch 11:svn62518-77.fc39 fedora 41 k texlive-times noarch 11:svn61719-69.fc39 fedora 368 k texlive-tipa noarch 11:svn29349.1.3-69.fc39 fedora 2.8 M texlive-titlesec noarch 11:svn59845-69.fc39 fedora 34 k texlive-tools noarch 11:svn64892-69.fc39 fedora 75 k texlive-translator noarch 11:svn59412-69.fc39 fedora 296 k texlive-transparent noarch 11:svn64852-69.fc39 fedora 286 k texlive-typehtml noarch 11:svn17134.0-69.fc39 fedora 21 k texlive-ucharcat noarch 11:svn38907-69.fc39 fedora 15 k texlive-ucs noarch 11:svn64114-69.fc39 fedora 423 k texlive-underscore noarch 11:svn18261.0-69.fc39 fedora 19 k texlive-unicode-data noarch 11:svn64423-69.fc39 fedora 371 k texlive-unicode-math noarch 11:svn61719-69.fc39 fedora 63 k texlive-uniquecounter noarch 11:svn53162-69.fc39 fedora 300 k texlive-url noarch 11:svn32528.3.4-69.fc39 fedora 20 k texlive-utopia noarch 11:svn15878.0-69.fc39 fedora 239 k texlive-varwidth noarch 11:svn24104.0.92-69.fc39 fedora 18 k texlive-xcolor noarch 11:svn63563-69.fc39 fedora 32 k texlive-xdvi aarch64 11:svn62387-77.fc39 fedora 346 k texlive-xetex aarch64 11:svn66203-77.fc39 fedora 1.2 M texlive-xetexconfig noarch 11:svn45845-69.fc39 fedora 11 k texlive-xifthen noarch 11:svn38929-69.fc39 fedora 16 k texlive-xkeyval noarch 11:svn63616-69.fc39 fedora 27 k texlive-xltxtra noarch 11:svn56594-69.fc39 fedora 17 k texlive-xpatch noarch 11:svn54563-69.fc39 fedora 19 k texlive-xstring noarch 11:svn65551-69.fc39 fedora 25 k texlive-xunicode noarch 11:svn30466.0.981-69.fc39 fedora 44 k texlive-zapfding noarch 11:svn61719-69.fc39 fedora 64 k texlive-zref noarch 11:svn62977-69.fc39 fedora 688 k tk aarch64 1:8.6.13-1.fc40 fedora 1.6 M tk-devel aarch64 1:8.6.13-1.fc40 fedora 541 k tre aarch64 0.8.0-41.20140228gitc2f5d13.fc39 fedora 40 k tre-common noarch 0.8.0-41.20140228gitc2f5d13.fc39 fedora 31 k tre-devel aarch64 0.8.0-41.20140228gitc2f5d13.fc39 fedora 12 k ttmkfdir aarch64 3.0.9-69.fc40 copr_base 52 k tzdata-java noarch 2023c-3.fc40 fedora 48 k urw-base35-bookman-fonts noarch 20200910-18.fc39 fedora 847 k urw-base35-c059-fonts noarch 20200910-18.fc39 fedora 874 k urw-base35-d050000l-fonts noarch 20200910-18.fc39 fedora 76 k urw-base35-fonts noarch 20200910-18.fc39 fedora 10 k urw-base35-fonts-common noarch 20200910-18.fc39 fedora 21 k urw-base35-gothic-fonts noarch 20200910-18.fc39 fedora 643 k urw-base35-nimbus-mono-ps-fonts noarch 20200910-18.fc39 fedora 795 k urw-base35-nimbus-roman-fonts noarch 20200910-18.fc39 fedora 856 k urw-base35-nimbus-sans-fonts noarch 20200910-18.fc39 fedora 1.3 M urw-base35-p052-fonts noarch 20200910-18.fc39 fedora 974 k urw-base35-standard-symbols-ps-fonts noarch 20200910-18.fc39 fedora 42 k urw-base35-z003-fonts noarch 20200910-18.fc39 fedora 276 k vim-filesystem noarch 2:9.0.1882-1.fc40 fedora 18 k xdg-utils noarch 1.1.3-15.fc40 fedora 77 k xml-common noarch 0.6.3-61.fc39 fedora 31 k xorg-x11-fonts-Type1 noarch 7.5-36.fc39 fedora 504 k xorg-x11-proto-devel noarch 2023.2-3.fc40 fedora 298 k xpdf-libs aarch64 1:4.04-10.fc39 fedora 611 k xz-devel aarch64 5.4.4-1.fc39 fedora 66 k zziplib aarch64 0.13.72-5.fc40 copr_base 88 k Transaction Summary =================================================================================================== Install 735 Packages Total download size: 513 M Installed size: 1.4 G Downloading Packages: (1/735): R-devel-4.3.1-3.fc40.aarch64.rpm 614 kB/s | 11 kB 00:00 (2/735): R-core-devel-4.3.1-3.fc40.aarch64.rpm 4.5 MB/s | 86 kB 00:00 (3/735): R-java-4.3.1-3.fc40.aarch64.rpm 2.5 MB/s | 11 kB 00:00 (4/735): R-java-devel-4.3.1-3.fc40.aarch64.rpm 1.9 MB/s | 11 kB 00:00 (5/735): cairo-1.17.8-5.fc40.aarch64.rpm 81 MB/s | 689 kB 00:00 (6/735): cups-libs-2.4.6-6.fc40.aarch64.rpm 50 MB/s | 267 kB 00:00 (7/735): emacs-filesystem-29.1-1.fc40.noarch.rp 1.0 MB/s | 8.9 kB 00:00 (8/735): freetype-2.13.1-2.fc40.aarch64.rpm 85 MB/s | 406 kB 00:00 (9/735): freetype-devel-2.13.1-2.fc40.aarch64.r 62 MB/s | 913 kB 00:00 (10/735): cpp-13.2.1-1.fc40.aarch64.rpm 136 MB/s | 9.7 MB 00:00 (11/735): R-core-4.3.1-3.fc40.aarch64.rpm 232 MB/s | 61 MB 00:00 (12/735): gcc-13.2.1-1.fc40.aarch64.rpm 134 MB/s | 31 MB 00:00 (13/735): gcc-plugin-annobin-13.2.1-1.fc40.aarc 4.0 MB/s | 47 kB 00:00 (14/735): gcc-c++-13.2.1-1.fc40.aarch64.rpm 52 MB/s | 12 MB 00:00 (15/735): gcc-gfortran-13.2.1-1.fc40.aarch64.rp 148 MB/s | 11 MB 00:00 (16/735): ghostscript-10.01.2-3.fc40.aarch64.rp 1.5 MB/s | 33 kB 00:00 (17/735): ghostscript-tools-fonts-10.01.2-3.fc4 1.1 MB/s | 12 kB 00:00 (18/735): ghostscript-tools-printing-10.01.2-3. 7.4 MB/s | 13 kB 00:00 (19/735): lcms2-2.15-2.fc40.aarch64.rpm 69 MB/s | 177 kB 00:00 (20/735): libRmath-4.3.1-3.fc40.aarch64.rpm 41 MB/s | 114 kB 00:00 (21/735): libRmath-devel-4.3.1-3.fc40.aarch64.r 9.8 MB/s | 16 kB 00:00 (22/735): libasan-13.2.1-1.fc40.aarch64.rpm 162 MB/s | 455 kB 00:00 (23/735): libatomic-13.2.1-1.fc40.aarch64.rpm 14 MB/s | 36 kB 00:00 (24/735): libblkid-devel-2.39.2-1.fc40.aarch64. 7.6 MB/s | 18 kB 00:00 (25/735): libfontenc-1.1.6-3.fc40.aarch64.rpm 25 MB/s | 33 kB 00:00 (26/735): libmount-devel-2.39.2-1.fc40.aarch64. 9.9 MB/s | 19 kB 00:00 (27/735): libgfortran-13.2.1-1.fc40.aarch64.rpm 87 MB/s | 438 kB 00:00 (28/735): libtiff-4.4.0-8.fc40.aarch64.rpm 66 MB/s | 196 kB 00:00 (29/735): libstdc++-devel-13.2.1-1.fc40.aarch64 256 MB/s | 2.5 MB 00:00 (30/735): libubsan-13.2.1-1.fc40.aarch64.rpm 42 MB/s | 204 kB 00:00 (31/735): libxml2-devel-2.11.5-1.fc40.aarch64.r 160 MB/s | 498 kB 00:00 (32/735): minizip-ng-3.0.7-4.fc40.aarch64.rpm 23 MB/s | 71 kB 00:00 (33/735): mkfontscale-1.2.2-4.fc40.aarch64.rpm 21 MB/s | 32 kB 00:00 (34/735): nspr-4.35.0-13.fc40.aarch64.rpm 62 MB/s | 136 kB 00:00 (35/735): minizip-ng-devel-3.0.7-4.fc40.aarch64 5.0 MB/s | 26 kB 00:00 (36/735): nss-3.93.0-2.fc40.aarch64.rpm 149 MB/s | 692 kB 00:00 (37/735): nss-softokn-3.93.0-2.fc40.aarch64.rpm 170 MB/s | 1.0 MB 00:00 (38/735): nss-softokn-freebl-3.93.0-2.fc40.aarc 99 MB/s | 309 kB 00:00 (39/735): nss-sysinit-3.93.0-2.fc40.aarch64.rpm 9.0 MB/s | 19 kB 00:00 (40/735): nss-util-3.93.0-2.fc40.aarch64.rpm 56 MB/s | 86 kB 00:00 (41/735): perl-Compress-Raw-Zlib-2.206-1.fc40.a 35 MB/s | 63 kB 00:00 (42/735): tcl-8.6.13-1.fc40.aarch64.rpm 253 MB/s | 1.1 MB 00:00 (43/735): tcl-devel-8.6.13-1.fc40.aarch64.rpm 37 MB/s | 164 kB 00:00 (44/735): ttmkfdir-3.0.9-69.fc40.aarch64.rpm 26 MB/s | 52 kB 00:00 (45/735): zlib-ng-compat-devel-2.1.3-4.fc40.aar 26 MB/s | 34 kB 00:00 (46/735): teckit-2.5.12-1.fc40.aarch64.rpm 82 MB/s | 431 kB 00:00 (47/735): zziplib-0.13.72-5.fc40.aarch64.rpm 51 MB/s | 88 kB 00:00 (48/735): libgs-10.01.2-3.fc40.aarch64.rpm 71 MB/s | 3.5 MB 00:00 (49/735): R-rpm-macros-1.2.1-7.fc39.noarch.rpm 855 kB/s | 11 kB 00:00 (50/735): abattis-cantarell-vf-fonts-0.301-10.f 7.7 MB/s | 121 kB 00:00 (51/735): adobe-mappings-cmap-deprecated-202306 25 MB/s | 113 kB 00:00 (52/735): adobe-mappings-pdf-20190401-5.fc39.no 83 MB/s | 698 kB 00:00 (53/735): adobe-mappings-cmap-20230622-1.fc39.n 99 MB/s | 2.1 MB 00:00 (54/735): alsa-lib-1.2.10-3.fc40.aarch64.rpm 43 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dbus-libs-1.14.10-1.fc40.aarch64.rpm 12 MB/s | 156 kB 00:00 (70/735): default-fonts-core-sans-4.0-9.fc40.no 8.8 MB/s | 32 kB 00:00 (71/735): desktop-file-utils-0.26-9.fc39.aarch6 18 MB/s | 71 kB 00:00 (72/735): cmake-data-3.27.4-8.fc40.noarch.rpm 50 MB/s | 2.2 MB 00:00 (73/735): expat-2.5.0-3.fc39.aarch64.rpm 21 MB/s | 108 kB 00:00 (74/735): expat-devel-2.5.0-3.fc39.aarch64.rpm 13 MB/s | 52 kB 00:00 (75/735): flexiblas-3.3.1-5.fc39.aarch64.rpm 9.6 MB/s | 33 kB 00:00 (76/735): flexiblas-devel-3.3.1-5.fc39.aarch64. 25 MB/s | 116 kB 00:00 (77/735): flexiblas-openblas-openmp-3.3.1-5.fc3 5.5 MB/s | 16 kB 00:00 (78/735): flexiblas-openblas-openmp64-3.3.1-5.f 4.7 MB/s | 16 kB 00:00 (79/735): fontconfig-2.14.2-5.fc40.aarch64.rpm 18 MB/s | 301 kB 00:00 (80/735): fontconfig-devel-2.14.2-5.fc40.aarch6 25 MB/s | 165 kB 00:00 (81/735): fonts-filesystem-2.0.5-12.fc39.noarch 3.8 MB/s | 8.2 kB 00:00 (82/735): fribidi-1.0.13-2.fc39.aarch64.rpm 21 MB/s | 91 kB 00:00 (83/735): gc-8.2.2-4.fc39.aarch64.rpm 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Running transaction test Transaction test succeeded. Running transaction Running scriptlet: texlive-base-11:20230311-77.fc39.aarch64 1/1 Running scriptlet: copy-jdk-configs-4.1-3.fc39.noarch 1/1 Running scriptlet: java-17-openjdk-headless-1:17.0.8.0.7-1.fc39.aarch64 1/1 Preparing : 1/1 Running scriptlet: texlive-base-11:20230311-77.fc39.aarch64 1/735 Installing : texlive-base-11:20230311-77.fc39.aarch64 1/735 Installing : texlive-lib-11:20230311-77.fc39.aarch64 2/735 Installing : libpng-2:1.6.37-15.fc39.aarch64 3/735 Installing : zlib-ng-compat-devel-2.1.3-4.fc40.aarch64 4/735 Installing : ruby-libs-3.2.2-181.fc39.aarch64 5/735 Installing : fonts-filesystem-1:2.0.5-12.fc39.noarch 6/735 Installing : urw-base35-fonts-common-20200910-18.fc39.noarch 7/735 Installing : expat-2.5.0-3.fc39.aarch64 8/735 Installing : cmake-filesystem-3.27.4-8.fc40.aarch64 9/735 Installing : nspr-4.35.0-13.fc40.aarch64 10/735 Installing : libgfortran-13.2.1-1.fc40.aarch64 11/735 Installing : nss-util-3.93.0-2.fc40.aarch64 12/735 Installing : 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46/735 Verifying : zlib-ng-compat-devel-2.1.3-4.fc40.aarch64 47/735 Verifying : zziplib-0.13.72-5.fc40.aarch64 48/735 Verifying : R-rpm-macros-1.2.1-7.fc39.noarch 49/735 Verifying : abattis-cantarell-vf-fonts-0.301-10.fc39.noarch 50/735 Verifying : adobe-mappings-cmap-20230622-1.fc39.noarch 51/735 Verifying : adobe-mappings-cmap-deprecated-20230622-1.fc39.n 52/735 Verifying : adobe-mappings-pdf-20190401-5.fc39.noarch 53/735 Verifying : alsa-lib-1.2.10-3.fc40.aarch64 54/735 Verifying : annobin-docs-12.26-1.fc40.noarch 55/735 Verifying : annobin-plugin-gcc-12.26-1.fc40.aarch64 56/735 Verifying : avahi-libs-0.8-24.fc39.aarch64 57/735 Verifying : biber-2.19-3.fc39.noarch 58/735 Verifying : brotli-1.1.0-1.fc40.aarch64 59/735 Verifying : brotli-devel-1.1.0-1.fc40.aarch64 60/735 Verifying : bzip2-devel-1.0.8-16.fc39.aarch64 61/735 Verifying : check-0.15.2-10.fc39.aarch64 62/735 Verifying : check-devel-0.15.2-10.fc39.aarch64 63/735 Verifying : cmake-3.27.4-8.fc40.aarch64 64/735 Verifying : cmake-data-3.27.4-8.fc40.noarch 65/735 Verifying : cmake-filesystem-3.27.4-8.fc40.aarch64 66/735 Verifying : cmake-rpm-macros-3.27.4-8.fc40.noarch 67/735 Verifying : copy-jdk-configs-4.1-3.fc39.noarch 68/735 Verifying : crypto-policies-scripts-20230731-1.git5ed06e0.fc 69/735 Verifying : dbus-libs-1:1.14.10-1.fc40.aarch64 70/735 Verifying : default-fonts-core-sans-4.0-9.fc40.noarch 71/735 Verifying : desktop-file-utils-0.26-9.fc39.aarch64 72/735 Verifying : expat-2.5.0-3.fc39.aarch64 73/735 Verifying : expat-devel-2.5.0-3.fc39.aarch64 74/735 Verifying : flexiblas-3.3.1-5.fc39.aarch64 75/735 Verifying : flexiblas-devel-3.3.1-5.fc39.aarch64 76/735 Verifying : flexiblas-netlib-3.3.1-5.fc39.aarch64 77/735 Verifying : flexiblas-netlib64-3.3.1-5.fc39.aarch64 78/735 Verifying : flexiblas-openblas-openmp-3.3.1-5.fc39.aarch64 79/735 Verifying : flexiblas-openblas-openmp64-3.3.1-5.fc39.aarch64 80/735 Verifying : fontconfig-2.14.2-5.fc40.aarch64 81/735 Verifying : fontconfig-devel-2.14.2-5.fc40.aarch64 82/735 Verifying : fonts-filesystem-1:2.0.5-12.fc39.noarch 83/735 Verifying : fribidi-1.0.13-2.fc39.aarch64 84/735 Verifying : gc-8.2.2-4.fc39.aarch64 85/735 Verifying : gettext-0.22-2.fc39.aarch64 86/735 Verifying : gettext-envsubst-0.22-2.fc39.aarch64 87/735 Verifying : gettext-libs-0.22-2.fc39.aarch64 88/735 Verifying : gettext-runtime-0.22-2.fc39.aarch64 89/735 Verifying : glib2-2.78.0-2.fc40.aarch64 90/735 Verifying : glib2-devel-2.78.0-2.fc40.aarch64 91/735 Verifying : glibc-devel-2.38.9000-9.fc40.aarch64 92/735 Verifying : gnutls-3.8.1-1.fc40.aarch64 93/735 Verifying : google-droid-sans-fonts-20200215-17.fc40.noarch 94/735 Verifying : google-noto-fonts-common-20230801-3.fc40.noarch 95/735 Verifying : google-noto-sans-vf-fonts-20230801-3.fc40.noarch 96/735 Verifying : graphite2-1.3.14-12.fc39.aarch64 97/735 Verifying : graphite2-devel-1.3.14-12.fc39.aarch64 98/735 Verifying : groff-base-1.23.0-2.fc39.aarch64 99/735 Verifying : guile22-2.2.7-9.fc39.aarch64 100/735 Verifying : harfbuzz-8.2.0-1.fc40.aarch64 101/735 Verifying : harfbuzz-devel-8.2.0-1.fc40.aarch64 102/735 Verifying : harfbuzz-icu-8.2.0-1.fc40.aarch64 103/735 Verifying : hostname-3.23-9.fc39.aarch64 104/735 Verifying : java-17-openjdk-1:17.0.8.0.7-1.fc39.aarch64 105/735 Verifying : java-17-openjdk-devel-1:17.0.8.0.7-1.fc39.aarch6 106/735 Verifying : java-17-openjdk-headless-1:17.0.8.0.7-1.fc39.aar 107/735 Verifying : javapackages-filesystem-6.2.0-3.fc40.noarch 108/735 Verifying : jbig2dec-libs-0.19-10.fc39.aarch64 109/735 Verifying : jbigkit-libs-2.1-26.fc39.aarch64 110/735 Verifying : jsoncpp-1.9.5-5.fc39.aarch64 111/735 Verifying : kernel-headers-6.6.0-0.rc2.git0.1.fc40.aarch64 112/735 Verifying : libICE-1.0.10-12.fc40.aarch64 113/735 Verifying : libSM-1.2.3-14.fc40.aarch64 114/735 Verifying : libX11-1.8.6-3.fc40.aarch64 115/735 Verifying : libX11-common-1.8.6-3.fc40.noarch 116/735 Verifying : libX11-devel-1.8.6-3.fc40.aarch64 117/735 Verifying : libX11-xcb-1.8.6-3.fc40.aarch64 118/735 Verifying : libXau-1.0.11-4.fc40.aarch64 119/735 Verifying : libXau-devel-1.0.11-4.fc40.aarch64 120/735 Verifying : libXaw-1.0.14-6.fc40.aarch64 121/735 Verifying : libXcomposite-0.4.5-11.fc40.aarch64 122/735 Verifying : libXext-1.3.5-3.fc39.aarch64 123/735 Verifying : libXft-2.3.8-4.fc40.aarch64 124/735 Verifying : libXft-devel-2.3.8-4.fc40.aarch64 125/735 Verifying : libXi-1.8.1-3.fc40.aarch64 126/735 Verifying : libXmu-1.1.4-4.fc40.aarch64 127/735 Verifying : libXpm-3.5.15-5.fc40.aarch64 128/735 Verifying : libXrender-0.9.11-4.fc40.aarch64 129/735 Verifying : libXrender-devel-0.9.11-4.fc40.aarch64 130/735 Verifying : libXt-1.2.1-6.fc40.aarch64 131/735 Verifying : libXtst-1.2.4-3.fc39.aarch64 132/735 Verifying : libb2-0.98.1-9.fc39.aarch64 133/735 Verifying : libdatrie-0.2.13-7.fc39.aarch64 134/735 Verifying : libffi-devel-3.4.4-4.fc39.aarch64 135/735 Verifying : libicu-73.2-2.fc39.aarch64 136/735 Verifying : libicu-devel-73.2-2.fc39.aarch64 137/735 Verifying : libijs-0.35-19.fc39.aarch64 138/735 Verifying : libjpeg-turbo-2.1.4-3.fc39.aarch64 139/735 Verifying : liblerc-4.0.0-4.fc39.aarch64 140/735 Verifying : libmpc-1.3.1-3.fc39.aarch64 141/735 Verifying : libpaper-1:2.1.1-1.fc39.aarch64 142/735 Verifying : libpng-2:1.6.37-15.fc39.aarch64 143/735 Verifying : libpng-devel-2:1.6.37-15.fc39.aarch64 144/735 Verifying : libselinux-devel-3.5-5.fc39.aarch64 145/735 Verifying : libsepol-devel-3.5-2.fc39.aarch64 146/735 Verifying : libthai-0.1.29-6.fc39.aarch64 147/735 Verifying : libtirpc-devel-1.3.3-1.rc2.fc39.aarch64 148/735 Verifying : libtool-ltdl-2.4.7-8.fc40.aarch64 149/735 Verifying : libuv-1:1.46.0-2.fc39.aarch64 150/735 Verifying : libwebp-1.3.2-1.fc40.aarch64 151/735 Verifying : libxcb-1.13.1-12.fc39.aarch64 152/735 Verifying : libxcb-devel-1.13.1-12.fc39.aarch64 153/735 Verifying : libxcrypt-devel-4.4.36-2.fc39.aarch64 154/735 Verifying : libxslt-1.1.38-3.fc39.aarch64 155/735 Verifying : libyaml-0.2.5-12.fc39.aarch64 156/735 Verifying : lksctp-tools-1.0.19-4.fc39.aarch64 157/735 Verifying : lua-5.4.6-3.fc39.aarch64 158/735 Verifying : lua-posix-36.2.1-3.fc39.aarch64 159/735 Verifying : mailcap-2.1.54-2.fc39.noarch 160/735 Verifying : make-1:4.4.1-2.fc39.aarch64 161/735 Verifying : mpdecimal-2.5.1-7.fc39.aarch64 162/735 Verifying : ncurses-6.4-7.20230520.fc40.aarch64 163/735 Verifying : nettle-3.9.1-2.fc39.aarch64 164/735 Verifying : openblas-0.3.21-6.fc39.aarch64 165/735 Verifying : openblas-openmp-0.3.21-6.fc39.aarch64 166/735 Verifying : openblas-openmp64-0.3.21-6.fc39.aarch64 167/735 Verifying : openjpeg2-2.5.0-4.fc39.aarch64 168/735 Verifying : pango-1.51.0-1.fc40.aarch64 169/735 Verifying : pcre2-devel-10.42-1.fc39.2.aarch64 170/735 Verifying : pcre2-utf16-10.42-1.fc39.2.aarch64 171/735 Verifying : pcre2-utf32-10.42-1.fc39.2.aarch64 172/735 Verifying : perl-Authen-SASL-2.1700-1.fc40.noarch 173/735 Verifying : perl-AutoLoader-5.74-500.fc39.noarch 174/735 Verifying : perl-AutoSplit-5.74-500.fc39.noarch 175/735 Verifying : perl-B-1.88-500.fc39.aarch64 176/735 Verifying : perl-B-Hooks-EndOfScope-0.26-7.fc39.noarch 177/735 Verifying : perl-Benchmark-1.24-500.fc39.noarch 178/735 Verifying : perl-Business-ISBN-3.008-2.fc39.noarch 179/735 Verifying : perl-Business-ISBN-Data-20230907.001-1.fc40.noar 180/735 Verifying : perl-Business-ISMN-1.203-2.fc39.noarch 181/735 Verifying : perl-Business-ISSN-1.005-8.fc39.noarch 182/735 Verifying : perl-Carp-1.54-500.fc39.noarch 183/735 Verifying : perl-Class-Accessor-0.51-18.fc39.noarch 184/735 Verifying : perl-Class-Data-Inheritable-0.09-6.fc39.noarch 185/735 Verifying : perl-Class-Inspector-1.36-14.fc39.noarch 186/735 Verifying : perl-Class-Method-Modifiers-2.15-2.fc39.noarch 187/735 Verifying : perl-Class-Singleton-1.6-9.fc39.noarch 188/735 Verifying : perl-Class-Struct-0.68-500.fc39.noarch 189/735 Verifying : perl-Clone-0.46-4.fc39.aarch64 190/735 Verifying : perl-Compress-Raw-Bzip2-2.206-1.fc39.aarch64 191/735 Verifying : perl-Convert-ASN1-0.34-1.fc40.noarch 192/735 Verifying : perl-Data-Compare-1.29-2.fc39.noarch 193/735 Verifying : perl-Data-Dump-1.25-8.fc39.noarch 194/735 Verifying : perl-Data-Dumper-2.188-501.fc39.aarch64 195/735 Verifying : perl-Data-OptList-0.114-2.fc39.noarch 196/735 Verifying : perl-Data-Uniqid-0.12-31.fc39.noarch 197/735 Verifying : perl-Date-ISO8601-0.005-18.fc39.noarch 198/735 Verifying : perl-Date-Manip-6.92-2.fc39.noarch 199/735 Verifying : perl-DateTime-2:1.59-5.fc39.aarch64 200/735 Verifying : perl-DateTime-Calendar-Julian-0.107-5.fc39.noarc 201/735 Verifying : perl-DateTime-Format-Builder-0.8300-11.fc39.noar 202/735 Verifying : perl-DateTime-Format-Strptime-1:1.79-8.fc39.noar 203/735 Verifying : perl-DateTime-Locale-1.39-2.fc39.noarch 204/735 Verifying : perl-DateTime-TimeZone-2.60-4.fc39.noarch 205/735 Verifying : perl-DateTime-TimeZone-SystemV-0.010-19.fc39.noa 206/735 Verifying : perl-DateTime-TimeZone-Tzfile-0.011-19.fc39.noar 207/735 Verifying : perl-Devel-CallChecker-0.009-3.fc39.aarch64 208/735 Verifying : perl-Devel-Caller-2.07-3.fc39.aarch64 209/735 Verifying : perl-Devel-GlobalDestruction-0.14-22.fc39.noarch 210/735 Verifying : perl-Devel-LexAlias-0.05-34.fc39.aarch64 211/735 Verifying : perl-Devel-PPPort-3.71-501.fc39.aarch64 212/735 Verifying : perl-Devel-StackTrace-1:2.04-16.fc39.noarch 213/735 Verifying : perl-Digest-1.20-500.fc39.noarch 214/735 Verifying : perl-Digest-HMAC-1.04-8.fc39.noarch 215/735 Verifying : perl-Digest-MD5-2.58-500.fc39.aarch64 216/735 Verifying : perl-Digest-SHA-1:6.04-501.fc39.aarch64 217/735 Verifying : perl-Dist-CheckConflicts-0.11-28.fc39.noarch 218/735 Verifying : perl-DynaLoader-1.54-500.fc39.aarch64 219/735 Verifying : perl-DynaLoader-Functions-0.004-2.fc39.noarch 220/735 Verifying : perl-Email-Date-Format-1.008-2.fc39.noarch 221/735 Verifying : perl-Encode-4:3.19-500.fc39.aarch64 222/735 Verifying : perl-Encode-Locale-1.05-27.fc39.noarch 223/735 Verifying : perl-English-1.11-500.fc39.noarch 224/735 Verifying : perl-Errno-1.37-500.fc39.aarch64 225/735 Verifying : perl-Eval-Closure-0.14-21.fc39.noarch 226/735 Verifying : perl-Exception-Class-1.45-8.fc39.noarch 227/735 Verifying : perl-Exporter-5.77-500.fc39.noarch 228/735 Verifying : perl-ExtUtils-Command-2:7.70-501.fc39.noarch 229/735 Verifying : perl-ExtUtils-Constant-0.25-500.fc39.noarch 230/735 Verifying : perl-ExtUtils-Embed-1.35-500.fc39.noarch 231/735 Verifying : perl-ExtUtils-Install-2.22-500.fc39.noarch 232/735 Verifying : perl-ExtUtils-MM-Utils-2:7.70-501.fc39.noarch 233/735 Verifying : perl-ExtUtils-MakeMaker-2:7.70-501.fc39.noarch 234/735 Verifying : perl-ExtUtils-Manifest-1:1.75-3.fc39.noarch 235/735 Verifying : perl-ExtUtils-ParseXS-1:3.51-501.fc40.noarch 236/735 Verifying : perl-Fcntl-1.15-500.fc39.aarch64 237/735 Verifying : perl-Fedora-VSP-0.001-32.fc39.noarch 238/735 Verifying : perl-File-Basename-2.86-500.fc39.noarch 239/735 Verifying : perl-File-Compare-1.100.700-500.fc39.noarch 240/735 Verifying : perl-File-Copy-2.41-500.fc39.noarch 241/735 Verifying : perl-File-Find-1.43-500.fc39.noarch 242/735 Verifying : perl-File-Find-Rule-0.34-26.fc39.noarch 243/735 Verifying : perl-File-Listing-6.16-1.fc39.noarch 244/735 Verifying : perl-File-Path-2.18-500.fc39.noarch 245/735 Verifying : perl-File-ShareDir-1.118-9.fc39.noarch 246/735 Verifying : perl-File-Slurper-0.014-3.fc39.noarch 247/735 Verifying : perl-File-Temp-1:0.231.100-500.fc39.noarch 248/735 Verifying : perl-File-stat-1.13-500.fc39.noarch 249/735 Verifying : perl-FileHandle-2.05-500.fc39.noarch 250/735 Verifying : perl-Filter-2:1.64-501.fc39.aarch64 251/735 Verifying : perl-GSSAPI-0.28-43.fc39.aarch64 252/735 Verifying : perl-Getopt-Long-1:2.54-500.fc39.noarch 253/735 Verifying : perl-Getopt-Std-1.13-500.fc39.noarch 254/735 Verifying : perl-HTML-Parser-3.81-3.fc39.aarch64 255/735 Verifying : perl-HTML-Tagset-3.20-55.fc40.noarch 256/735 Verifying : perl-HTTP-Cookies-6.10-10.fc39.noarch 257/735 Verifying : perl-HTTP-Date-6.06-2.fc39.noarch 258/735 Verifying : perl-HTTP-Message-6.44-3.fc39.noarch 259/735 Verifying : perl-HTTP-Negotiate-6.01-36.fc39.noarch 260/735 Verifying : perl-HTTP-Tiny-0.088-3.fc39.noarch 261/735 Verifying : perl-Hash-Util-FieldHash-1.26-500.fc39.aarch64 262/735 Verifying : perl-I18N-LangTags-0.45-500.fc39.noarch 263/735 Verifying : perl-I18N-Langinfo-0.22-500.fc39.aarch64 264/735 Verifying : perl-IO-1.52-500.fc39.aarch64 265/735 Verifying : perl-IO-Compress-2.206-1.fc39.noarch 266/735 Verifying : perl-IO-HTML-1.004-11.fc39.noarch 267/735 Verifying : perl-IO-Socket-IP-0.42-1.fc39.noarch 268/735 Verifying : perl-IO-Socket-SSL-2.083-3.fc39.noarch 269/735 Verifying : perl-IO-String-1.08-48.fc39.noarch 270/735 Verifying : perl-IPC-Cmd-2:1.04-501.fc39.noarch 271/735 Verifying : perl-IPC-Open3-1.22-500.fc39.noarch 272/735 Verifying : perl-IPC-Run3-0.048-29.fc39.noarch 273/735 Verifying : perl-IPC-SysV-2.09-501.fc39.aarch64 274/735 Verifying : perl-IPC-System-Simple-1.30-11.fc39.noarch 275/735 Verifying : perl-JSON-4.10-3.fc39.noarch 276/735 Verifying : perl-JSON-PP-1:4.16-501.fc39.noarch 277/735 Verifying : perl-LDAP-1:0.68-11.fc39.noarch 278/735 Verifying : perl-LWP-MediaTypes-6.04-15.fc39.noarch 279/735 Verifying : perl-LWP-Protocol-https-6.11-1.fc39.noarch 280/735 Verifying : perl-Lingua-Translit-0.29-4.fc39.noarch 281/735 Verifying : perl-List-AllUtils-0.19-10.fc39.noarch 282/735 Verifying : perl-List-SomeUtils-0.59-3.fc39.noarch 283/735 Verifying : perl-List-UtilsBy-0.12-7.fc39.noarch 284/735 Verifying : perl-Locale-Maketext-1.33-501.fc39.noarch 285/735 Verifying : perl-Locale-Maketext-Simple-1:0.21-500.fc39.noar 286/735 Verifying : perl-Log-Dispatch-2.71-2.fc39.noarch 287/735 Verifying : perl-Log-Dispatch-FileRotate-1.38-7.fc39.noarch 288/735 Verifying : perl-Log-Log4perl-1.57-3.fc39.noarch 289/735 Verifying : perl-MIME-Base64-3.16-500.fc39.aarch64 290/735 Verifying : perl-MIME-Charset-1.013.1-3.fc39.noarch 291/735 Verifying : perl-MIME-Lite-3.033-8.fc39.noarch 292/735 Verifying : perl-MIME-Types-2.24-3.fc39.noarch 293/735 Verifying : perl-MRO-Compat-0.15-7.fc39.noarch 294/735 Verifying : perl-Mail-Sender-1:0.903-22.fc39.noarch 295/735 Verifying : perl-Mail-Sendmail-0.80-18.fc39.noarch 296/735 Verifying : perl-MailTools-2.21-14.fc39.noarch 297/735 Verifying : perl-Math-BigInt-1:1.9998.39-2.fc39.noarch 298/735 Verifying : perl-Math-BigRat-0.2624-500.fc39.noarch 299/735 Verifying : perl-Math-Complex-1.62-500.fc39.noarch 300/735 Verifying : perl-Module-CoreList-1:5.20230820-1.fc40.noarch 301/735 Verifying : perl-Module-Implementation-0.09-37.fc39.noarch 302/735 Verifying : perl-Module-Load-1:0.36-500.fc39.noarch 303/735 Verifying : perl-Module-Load-Conditional-0.74-500.fc39.noarc 304/735 Verifying : perl-Module-Metadata-1.000038-3.fc39.noarch 305/735 Verifying : perl-Module-Runtime-0.016-20.fc39.noarch 306/735 Verifying : perl-Mozilla-CA-20230821-1.fc40.noarch 307/735 Verifying : perl-NTLM-1.09-36.fc39.noarch 308/735 Verifying : perl-Net-HTTP-6.23-2.fc39.noarch 309/735 Verifying : perl-Net-SMTP-SSL-1.04-22.fc40.noarch 310/735 Verifying : perl-Net-SSLeay-1.92-10.fc39.aarch64 311/735 Verifying : perl-Number-Compare-0.03-36.fc39.noarch 312/735 Verifying : perl-Object-HashBase-0.009-13.fc39.noarch 313/735 Verifying : perl-Opcode-1.64-500.fc39.aarch64 314/735 Verifying : perl-POSIX-2.13-500.fc39.aarch64 315/735 Verifying : perl-Package-Generator-1.106-29.fc39.noarch 316/735 Verifying : perl-Package-Stash-0.40-5.fc39.noarch 317/735 Verifying : perl-Package-Stash-XS-0.30-5.fc39.aarch64 318/735 Verifying : perl-PadWalker-2.5-10.fc39.aarch64 319/735 Verifying : perl-Params-Check-1:0.38-500.fc39.noarch 320/735 Verifying : perl-Params-Classify-0.015-20.fc39.aarch64 321/735 Verifying : perl-Params-Util-1.102-12.fc39.aarch64 322/735 Verifying : perl-Params-Validate-1.31-5.fc39.aarch64 323/735 Verifying : perl-Params-ValidationCompiler-0.31-3.fc39.noarc 324/735 Verifying : perl-Parse-RecDescent-1.967015-20.fc39.noarch 325/735 Verifying : perl-PathTools-3.89-500.fc39.aarch64 326/735 Verifying : perl-Pod-Escapes-1:1.07-501.fc40.noarch 327/735 Verifying : perl-Pod-Html-1.34-500.fc39.noarch 328/735 Verifying : perl-Pod-Perldoc-3.28.01-501.fc39.noarch 329/735 Verifying : perl-Pod-Simple-1:3.45-4.fc39.noarch 330/735 Verifying : perl-Pod-Usage-4:2.03-500.fc39.noarch 331/735 Verifying : perl-Ref-Util-0.204-18.fc39.noarch 332/735 Verifying : perl-Ref-Util-XS-0.117-20.fc39.aarch64 333/735 Verifying : perl-Regexp-Common-2017060201-22.fc39.noarch 334/735 Verifying : perl-Role-Tiny-2.002004-9.fc39.noarch 335/735 Verifying : perl-Safe-2.44-500.fc39.noarch 336/735 Verifying : perl-Scalar-List-Utils-5:1.63-500.fc39.aarch64 337/735 Verifying : perl-SelectSaver-1.02-500.fc39.noarch 338/735 Verifying : perl-Socket-4:2.037-3.fc39.aarch64 339/735 Verifying : perl-Sort-Key-1.33-28.fc39.aarch64 340/735 Verifying : perl-Specio-0.48-4.fc39.noarch 341/735 Verifying : perl-Storable-1:3.32-500.fc39.aarch64 342/735 Verifying : perl-Sub-Exporter-0.990-1.fc39.noarch 343/735 Verifying : perl-Sub-Exporter-Progressive-0.001013-22.fc39.n 344/735 Verifying : perl-Sub-Identify-0.14-24.fc39.aarch64 345/735 Verifying : perl-Sub-Install-0.929-3.fc39.noarch 346/735 Verifying : perl-Symbol-1.09-500.fc39.noarch 347/735 Verifying : perl-Sys-Hostname-1.25-500.fc39.aarch64 348/735 Verifying : perl-Sys-Syslog-0.36-501.fc39.aarch64 349/735 Verifying : perl-Term-ANSIColor-5.01-501.fc39.noarch 350/735 Verifying : perl-Term-Cap-1.18-500.fc39.noarch 351/735 Verifying : perl-Term-Table-0.017-1.fc40.noarch 352/735 Verifying : perl-Test-1.31-500.fc39.noarch 353/735 Verifying : perl-Test-Harness-1:3.47-1.fc40.noarch 354/735 Verifying : perl-Test-Simple-3:1.302195-5.fc39.noarch 355/735 Verifying : perl-Text-Balanced-2.06-500.fc39.noarch 356/735 Verifying : perl-Text-BibTeX-0.89-3.fc39.aarch64 357/735 Verifying : perl-Text-CSV-2.03-1.fc40.noarch 358/735 Verifying : perl-Text-Glob-0.11-21.fc39.noarch 359/735 Verifying : perl-Text-ParseWords-3.31-500.fc39.noarch 360/735 Verifying : perl-Text-Roman-3.5-25.fc39.noarch 361/735 Verifying : perl-Text-Soundex-3.05-28.fc39.aarch64 362/735 Verifying : perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch 363/735 Verifying : perl-Text-Unidecode-1.30-22.fc39.noarch 364/735 Verifying : perl-Tie-4.6-500.fc39.noarch 365/735 Verifying : perl-Tie-Cycle-1.227-9.fc39.noarch 366/735 Verifying : perl-Tie-RefHash-1.40-500.fc39.noarch 367/735 Verifying : perl-Time-HiRes-4:1.9775-500.fc39.aarch64 368/735 Verifying : perl-Time-Local-2:1.350-3.fc39.noarch 369/735 Verifying : perl-TimeDate-1:2.33-11.fc39.noarch 370/735 Verifying : perl-Try-Tiny-0.31-6.fc39.noarch 371/735 Verifying : perl-URI-5.21-1.fc40.noarch 372/735 Verifying : perl-Unicode-Collate-1.31-500.fc39.aarch64 373/735 Verifying : perl-Unicode-LineBreak-2019.001-18.fc39.aarch64 374/735 Verifying : perl-Unicode-Normalize-1.32-500.fc39.aarch64 375/735 Verifying : perl-Unicode-UCD-0.78-500.fc39.noarch 376/735 Verifying : perl-Variable-Magic-0.63-4.fc39.aarch64 377/735 Verifying : perl-WWW-RobotRules-6.02-37.fc39.noarch 378/735 Verifying : perl-XML-LibXML-1:2.0209-2.fc39.aarch64 379/735 Verifying : perl-XML-LibXML-Simple-1.01-12.fc39.noarch 380/735 Verifying : perl-XML-LibXSLT-2.002.001-3.fc39.aarch64 381/735 Verifying : perl-XML-NamespaceSupport-1.12-21.fc40.noarch 382/735 Verifying : perl-XML-Parser-2.46-15.fc39.aarch64 383/735 Verifying : perl-XML-SAX-1.02-13.fc39.noarch 384/735 Verifying : perl-XML-SAX-Base-1.09-20.fc39.noarch 385/735 Verifying : perl-XML-Writer-0.900-12.fc39.noarch 386/735 Verifying : perl-XML-XPath-1.48-4.fc39.noarch 387/735 Verifying : perl-XString-0.005-10.fc39.aarch64 388/735 Verifying : perl-autodie-2.36-501.fc39.noarch 389/735 Verifying : perl-autovivification-0.18-20.fc39.aarch64 390/735 Verifying : perl-base-2.27-500.fc39.noarch 391/735 Verifying : perl-constant-1.33-501.fc39.noarch 392/735 Verifying : perl-deprecate-0.04-500.fc39.noarch 393/735 Verifying : perl-devel-4:5.38.0-500.fc39.aarch64 394/735 Verifying : perl-encoding-4:3.00-500.fc39.aarch64 395/735 Verifying : perl-generators-1.16-3.fc39.noarch 396/735 Verifying : perl-if-0.61.000-500.fc39.noarch 397/735 Verifying : perl-interpreter-4:5.38.0-500.fc39.aarch64 398/735 Verifying : perl-lib-0.65-500.fc39.aarch64 399/735 Verifying : perl-libnet-3.15-501.fc39.noarch 400/735 Verifying : perl-libs-4:5.38.0-500.fc39.aarch64 401/735 Verifying : perl-libwww-perl-6.72-1.fc39.noarch 402/735 Verifying : perl-locale-1.10-500.fc39.noarch 403/735 Verifying : perl-macros-4:5.38.0-500.fc39.noarch 404/735 Verifying : perl-meta-notation-5.38.0-500.fc39.noarch 405/735 Verifying : perl-mro-1.28-500.fc39.aarch64 406/735 Verifying : perl-namespace-autoclean-0.29-16.fc39.noarch 407/735 Verifying : perl-namespace-clean-0.27-24.fc39.noarch 408/735 Verifying : perl-open-1.13-500.fc39.noarch 409/735 Verifying : perl-overload-1.37-500.fc39.noarch 410/735 Verifying : perl-overloading-0.02-500.fc39.noarch 411/735 Verifying : perl-parent-1:0.241-500.fc39.noarch 412/735 Verifying : perl-podlators-1:5.01-500.fc39.noarch 413/735 Verifying : perl-sigtrap-1.10-500.fc39.noarch 414/735 Verifying : perl-subs-1.04-500.fc39.noarch 415/735 Verifying : perl-vars-1.05-500.fc39.noarch 416/735 Verifying : perl-version-8:0.99.30-1.fc40.aarch64 417/735 Verifying : perltidy-20230912-1.fc40.noarch 418/735 Verifying : pixman-0.42.2-2.fc39.aarch64 419/735 Verifying : pyproject-rpm-macros-1.9.0-2.fc39.noarch 420/735 Verifying : python-pip-wheel-23.2.1-1.fc39.noarch 421/735 Verifying : python-rpm-macros-3.12-4.fc40.noarch 422/735 Verifying : python3-3.12.0~rc2-1.fc40.aarch64 423/735 Verifying : python3-devel-3.12.0~rc2-1.fc40.aarch64 424/735 Verifying : python3-libs-3.12.0~rc2-1.fc40.aarch64 425/735 Verifying : python3-packaging-23.1-5.fc40.noarch 426/735 Verifying : python3-pyparsing-3.0.9-11.fc39.noarch 427/735 Verifying : python3-rpm-generators-14-7.fc39.noarch 428/735 Verifying : python3-rpm-macros-3.12-4.fc40.noarch 429/735 Verifying : python3-setuptools-67.7.2-7.fc40.noarch 430/735 Verifying : rhash-1.4.3-3.fc39.aarch64 431/735 Verifying : ruby-3.2.2-181.fc39.aarch64 432/735 Verifying : ruby-default-gems-3.2.2-181.fc39.noarch 433/735 Verifying : ruby-devel-3.2.2-181.fc39.aarch64 434/735 Verifying : ruby-libs-3.2.2-181.fc39.aarch64 435/735 Verifying : rubygem-io-console-0.6.0-181.fc39.aarch64 436/735 Verifying : rubygem-psych-5.0.1-181.fc39.aarch64 437/735 Verifying : rubygems-3.4.10-181.fc39.noarch 438/735 Verifying : rubypick-1.1.1-19.fc39.noarch 439/735 Verifying : sombok-2.4.0-20.fc39.aarch64 440/735 Verifying : subunit-1.4.2-4.fc39.aarch64 441/735 Verifying : subunit-devel-1.4.2-4.fc39.aarch64 442/735 Verifying : swig-4.1.1-9.fc39.aarch64 443/735 Verifying : sysprof-capture-devel-3.48.0-2.fc39.aarch64 444/735 Verifying : systemtap-sdt-devel-5.0~pre16891249ge891a37e-0.2 445/735 Verifying : texlive-ae-11:svn15878.1.4-69.fc39.noarch 446/735 Verifying : texlive-algorithms-11:svn42428-69.fc39.noarch 447/735 Verifying : texlive-alphalph-11:svn53087-69.fc39.noarch 448/735 Verifying : texlive-amscls-11:svn55378-69.fc39.noarch 449/735 Verifying : texlive-amsfonts-11:svn61937-69.fc39.noarch 450/735 Verifying : texlive-amsmath-11:svn63514-69.fc39.noarch 451/735 Verifying : texlive-anysize-11:svn15878.0-69.fc39.noarch 452/735 Verifying : texlive-atbegshi-11:svn53051-69.fc39.noarch 453/735 Verifying : texlive-attachfile-11:svn42099-69.fc39.noarch 454/735 Verifying : texlive-attachfile2-11:svn57959-77.fc39.noarch 455/735 Verifying : texlive-atveryend-11:svn53108-69.fc39.noarch 456/735 Verifying : texlive-auto-pst-pdf-11:svn56596-69.fc39.noarch 457/735 Verifying : texlive-auxhook-11:svn53173-69.fc39.noarch 458/735 Verifying : texlive-avantgar-11:svn61983-69.fc39.noarch 459/735 Verifying : texlive-babel-english-11:svn44495-69.fc39.noarch 460/735 Verifying : texlive-babel-11:svn65823-69.fc39.noarch 461/735 Verifying : texlive-babelbib-11:svn57349-69.fc39.noarch 462/735 Verifying : texlive-base-11:20230311-77.fc39.aarch64 463/735 Verifying : texlive-beamer-11:svn65984-69.fc39.noarch 464/735 Verifying : texlive-bera-11:svn20031.0-69.fc39.noarch 465/735 Verifying : texlive-beton-11:svn15878.0-69.fc39.noarch 466/735 Verifying : texlive-biblatex-11:svn66403-69.fc39.noarch 467/735 Verifying : texlive-bibtex-11:svn66186-77.fc39.aarch64 468/735 Verifying : texlive-bidi-11:svn65572-69.fc39.noarch 469/735 Verifying : texlive-bigintcalc-11:svn53172-69.fc39.noarch 470/735 Verifying : texlive-bitset-11:svn53837-69.fc39.noarch 471/735 Verifying : texlive-bookman-11:svn61719-69.fc39.noarch 472/735 Verifying : texlive-bookmark-11:svn56885-69.fc39.noarch 473/735 Verifying : texlive-booktabs-11:svn53402-69.fc39.noarch 474/735 Verifying : texlive-breakurl-11:svn29901.1.40-69.fc39.noarch 475/735 Verifying : texlive-breqn-11:svn60881-69.fc39.noarch 476/735 Verifying : texlive-caption-11:svn66580-69.fc39.noarch 477/735 Verifying : texlive-carlisle-11:svn59577-69.fc39.noarch 478/735 Verifying : texlive-catchfile-11:svn53084-69.fc39.noarch 479/735 Verifying : texlive-changepage-11:svn15878.1.0c-69.fc39.noar 480/735 Verifying : texlive-charter-11:svn15878.0-69.fc39.noarch 481/735 Verifying : texlive-cite-11:svn36428.5.5-69.fc39.noarch 482/735 Verifying : texlive-cm-super-11:svn15878.0-69.fc39.noarch 483/735 Verifying : texlive-cm-11:svn57963-69.fc39.noarch 484/735 Verifying : texlive-cmap-11:svn57640-69.fc39.noarch 485/735 Verifying : texlive-collection-basic-11:svn59159-69.fc39.noa 486/735 Verifying : texlive-collection-latex-11:svn63515-69.fc39.noa 487/735 Verifying : texlive-collection-latexrecommended-11:svn65512- 488/735 Verifying : texlive-colorprofiles-11:svn49086-69.fc39.noarch 489/735 Verifying : texlive-colortbl-11:svn64015-69.fc39.noarch 490/735 Verifying : texlive-courier-11:svn61719-69.fc39.noarch 491/735 Verifying : texlive-crop-11:svn55424-69.fc39.noarch 492/735 Verifying : texlive-csquotes-11:svn64389-69.fc39.noarch 493/735 Verifying : texlive-ctable-11:svn38672-69.fc39.noarch 494/735 Verifying : texlive-ctablestack-11:svn38514-69.fc39.noarch 495/735 Verifying : texlive-currfile-11:svn64673-69.fc39.noarch 496/735 Verifying : texlive-dehyph-11:svn48599-69.fc39.noarch 497/735 Verifying : texlive-dvipdfmx-11:svn66203-77.fc39.aarch64 498/735 Verifying : texlive-dvips-11:svn66203-77.fc39.aarch64 499/735 Verifying : texlive-ec-11:svn25033.1.0-69.fc39.noarch 500/735 Verifying : texlive-enctex-11:svn34957.0-69.fc39.noarch 501/735 Verifying : texlive-enumitem-11:svn51423-69.fc39.noarch 502/735 Verifying : texlive-epstopdf-pkg-11:svn53546-69.fc39.noarch 503/735 Verifying : texlive-epstopdf-11:svn66461-77.fc39.noarch 504/735 Verifying : texlive-eso-pic-11:svn56658-69.fc39.noarch 505/735 Verifying : texlive-etex-pkg-11:svn41784-69.fc39.noarch 506/735 Verifying : texlive-etex-11:svn66203-69.fc39.noarch 507/735 Verifying : texlive-etexcmds-11:svn53171-69.fc39.noarch 508/735 Verifying : texlive-etoolbox-11:svn56554-69.fc39.noarch 509/735 Verifying : texlive-euenc-11:svn19795.0.1h-69.fc39.noarch 510/735 Verifying : texlive-euler-11:svn42428-69.fc39.noarch 511/735 Verifying : texlive-everysel-11:svn57489-69.fc39.noarch 512/735 Verifying : texlive-everyshi-11:svn57001-69.fc39.noarch 513/735 Verifying : texlive-extsizes-11:svn17263.1.4a-69.fc39.noarch 514/735 Verifying : texlive-fancybox-11:svn18304.1.4-69.fc39.noarch 515/735 Verifying : texlive-fancyhdr-11:svn64977-69.fc39.noarch 516/735 Verifying : texlive-fancyref-11:svn15878.0.9c-69.fc39.noarch 517/735 Verifying : texlive-fancyvrb-11:svn65585-69.fc39.noarch 518/735 Verifying : texlive-filecontents-11:svn52142-69.fc39.noarch 519/735 Verifying : texlive-filehook-11:svn64822-69.fc39.noarch 520/735 Verifying : texlive-finstrut-11:svn21719.0.5-69.fc39.noarch 521/735 Verifying : texlive-firstaid-11:svn64892-69.fc39.noarch 522/735 Verifying : texlive-fix2col-11:svn38770-69.fc39.noarch 523/735 Verifying : texlive-float-11:svn15878.1.3d-69.fc39.noarch 524/735 Verifying : texlive-fontspec-11:svn63386-69.fc39.noarch 525/735 Verifying : texlive-footmisc-11:svn62524-69.fc39.noarch 526/735 Verifying : texlive-footnotehyper-11:svn60374-69.fc39.noarch 527/735 Verifying : texlive-fp-11:svn49719-69.fc39.noarch 528/735 Verifying : texlive-fpl-11:svn54512-69.fc39.noarch 529/735 Verifying : texlive-geometry-11:svn61719-69.fc39.noarch 530/735 Verifying : texlive-gettitlestring-11:svn53170-69.fc39.noarc 531/735 Verifying : texlive-glyphlist-11:svn54074-77.fc39.noarch 532/735 Verifying : texlive-graphics-cfg-11:svn41448-69.fc39.noarch 533/735 Verifying : texlive-graphics-def-11:svn64487-69.fc39.noarch 534/735 Verifying : texlive-graphics-11:svn66204-69.fc39.noarch 535/735 Verifying : texlive-grfext-11:svn53024-69.fc39.noarch 536/735 Verifying : texlive-grffile-11:svn52756-69.fc39.noarch 537/735 Verifying : texlive-gsftopk-11:svn52851-77.fc39.aarch64 538/735 Verifying : texlive-helvetic-11:svn61719-69.fc39.noarch 539/735 Verifying : texlive-hobsub-11:svn52810-69.fc39.noarch 540/735 Verifying : texlive-hologo-11:svn61719-69.fc39.noarch 541/735 Verifying : texlive-hopatch-11:svn65491-69.fc39.noarch 542/735 Verifying : texlive-hycolor-11:svn53584-69.fc39.noarch 543/735 Verifying : texlive-hypdoc-11:svn65678-69.fc39.noarch 544/735 Verifying : texlive-hyperref-11:svn65758-69.fc39.noarch 545/735 Verifying : texlive-hyph-utf8-11:svn61719-69.fc39.noarch 546/735 Verifying : texlive-hyphen-base-11:svn66413-69.fc39.noarch 547/735 Verifying : texlive-hyphenex-11:svn57387-69.fc39.noarch 548/735 Verifying : texlive-ifmtarg-11:svn47544-69.fc39.noarch 549/735 Verifying : texlive-ifplatform-11:svn45533-69.fc39.noarch 550/735 Verifying : texlive-iftex-11:svn61910-69.fc39.noarch 551/735 Verifying : texlive-index-11:svn24099.4.1beta-69.fc39.noarch 552/735 Verifying : texlive-infwarerr-11:svn53023-69.fc39.noarch 553/735 Verifying : texlive-intcalc-11:svn53168-69.fc39.noarch 554/735 Verifying : texlive-jknapltx-11:svn19440.0-69.fc39.noarch 555/735 Verifying : texlive-kastrup-11:svn15878.0-69.fc39.noarch 556/735 Verifying : texlive-knuth-lib-11:svn57963-69.fc39.noarch 557/735 Verifying : texlive-knuth-local-11:svn57963-69.fc39.noarch 558/735 Verifying : texlive-koma-script-11:svn64685-69.fc39.noarch 559/735 Verifying : texlive-kpathsea-11:svn66209-77.fc39.aarch64 560/735 Verifying : texlive-kvdefinekeys-11:svn53193-69.fc39.noarch 561/735 Verifying : texlive-kvoptions-11:svn63622-69.fc39.noarch 562/735 Verifying : texlive-kvsetkeys-11:svn64632-69.fc39.noarch 563/735 Verifying : texlive-l3backend-11:svn65573-69.fc39.noarch 564/735 Verifying : texlive-l3experimental-11:svn65621-69.fc39.noarc 565/735 Verifying : texlive-l3kernel-11:svn66094-69.fc39.noarch 566/735 Verifying : texlive-l3packages-11:svn65722-69.fc39.noarch 567/735 Verifying : texlive-latex-fonts-11:svn28888.0-69.fc39.noarch 568/735 Verifying : texlive-latex-lab-11:svn64892-69.fc39.noarch 569/735 Verifying : texlive-latex-11:svn65161-77.fc39.noarch 570/735 Verifying : texlive-latexbug-11:svn63596-69.fc39.noarch 571/735 Verifying : texlive-latexconfig-11:svn53525-69.fc39.noarch 572/735 Verifying : texlive-letltxmacro-11:svn53022-69.fc39.noarch 573/735 Verifying : texlive-lib-11:20230311-77.fc39.aarch64 574/735 Verifying : texlive-lineno-11:svn65586-69.fc39.noarch 575/735 Verifying : texlive-listings-11:svn66222-69.fc39.noarch 576/735 Verifying : texlive-lm-math-11:svn36915.1.959-69.fc39.noarch 577/735 Verifying : texlive-lm-11:svn65956-69.fc39.noarch 578/735 Verifying : texlive-logreq-11:svn53003-69.fc39.noarch 579/735 Verifying : texlive-ltabptch-11:svn17533.1.74d-69.fc39.noarc 580/735 Verifying : texlive-ltxcmds-11:svn56421-69.fc39.noarch 581/735 Verifying : texlive-ltxmisc-11:svn21927.0-69.fc39.noarch 582/735 Verifying : texlive-lua-alt-getopt-11:svn56414-69.fc39.noarc 583/735 Verifying : texlive-lua-uni-algos-11:svn62204-69.fc39.noarch 584/735 Verifying : texlive-luabidi-11:svn54512-69.fc39.noarch 585/735 Verifying : texlive-luahbtex-11:svn66186-77.fc39.aarch64 586/735 Verifying : texlive-lualatex-math-11:svn61464-69.fc39.noarch 587/735 Verifying : texlive-lualibs-11:svn64615-69.fc39.noarch 588/735 Verifying : texlive-luaotfload-11:svn64616-77.fc39.noarch 589/735 Verifying : texlive-luatex-11:svn66967-77.fc39.aarch64 590/735 Verifying : texlive-luatexbase-11:svn52663-69.fc39.noarch 591/735 Verifying : texlive-lwarp-11:svn66259-77.fc39.noarch 592/735 Verifying : texlive-makecmds-11:svn15878.0-69.fc39.noarch 593/735 Verifying : texlive-makeindex-11:svn62517-77.fc39.aarch64 594/735 Verifying : texlive-marginnote-11:svn48383-69.fc39.noarch 595/735 Verifying : texlive-marvosym-11:svn29349.2.2a-69.fc39.noarch 596/735 Verifying : texlive-mathpazo-11:svn52663-69.fc39.noarch 597/735 Verifying : 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texlive-transparent-11:svn64852-69.fc39.noarch 688/735 Verifying : texlive-typehtml-11:svn17134.0-69.fc39.noarch 689/735 Verifying : texlive-ucharcat-11:svn38907-69.fc39.noarch 690/735 Verifying : texlive-ucs-11:svn64114-69.fc39.noarch 691/735 Verifying : texlive-underscore-11:svn18261.0-69.fc39.noarch 692/735 Verifying : texlive-unicode-data-11:svn64423-69.fc39.noarch 693/735 Verifying : texlive-unicode-math-11:svn61719-69.fc39.noarch 694/735 Verifying : texlive-uniquecounter-11:svn53162-69.fc39.noarch 695/735 Verifying : texlive-url-11:svn32528.3.4-69.fc39.noarch 696/735 Verifying : texlive-utopia-11:svn15878.0-69.fc39.noarch 697/735 Verifying : texlive-varwidth-11:svn24104.0.92-69.fc39.noarch 698/735 Verifying : texlive-xcolor-11:svn63563-69.fc39.noarch 699/735 Verifying : texlive-xdvi-11:svn62387-77.fc39.aarch64 700/735 Verifying : texlive-xetex-11:svn66203-77.fc39.aarch64 701/735 Verifying : texlive-xetexconfig-11:svn45845-69.fc39.noarch 702/735 Verifying : 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urw-base35-d050000l-fonts-20200910-18.fc39.noarc 719/735 Verifying : urw-base35-fonts-20200910-18.fc39.noarch 720/735 Verifying : urw-base35-fonts-common-20200910-18.fc39.noarch 721/735 Verifying : urw-base35-gothic-fonts-20200910-18.fc39.noarch 722/735 Verifying : urw-base35-nimbus-mono-ps-fonts-20200910-18.fc39 723/735 Verifying : urw-base35-nimbus-roman-fonts-20200910-18.fc39.n 724/735 Verifying : urw-base35-nimbus-sans-fonts-20200910-18.fc39.no 725/735 Verifying : urw-base35-p052-fonts-20200910-18.fc39.noarch 726/735 Verifying : urw-base35-standard-symbols-ps-fonts-20200910-18 727/735 Verifying : urw-base35-z003-fonts-20200910-18.fc39.noarch 728/735 Verifying : vim-filesystem-2:9.0.1882-1.fc40.noarch 729/735 Verifying : xdg-utils-1.1.3-15.fc40.noarch 730/735 Verifying : xml-common-0.6.3-61.fc39.noarch 731/735 Verifying : xorg-x11-fonts-Type1-7.5-36.fc39.noarch 732/735 Verifying : xorg-x11-proto-devel-2023.2-3.fc40.noarch 733/735 Verifying : xpdf-libs-1:4.04-10.fc39.aarch64 734/735 Verifying : xz-devel-5.4.4-1.fc39.aarch64 735/735 Installed: R-core-4.3.1-3.fc40.aarch64 R-core-devel-4.3.1-3.fc40.aarch64 R-devel-4.3.1-3.fc40.aarch64 R-java-4.3.1-3.fc40.aarch64 R-java-devel-4.3.1-3.fc40.aarch64 R-rpm-macros-1.2.1-7.fc39.noarch abattis-cantarell-vf-fonts-0.301-10.fc39.noarch adobe-mappings-cmap-20230622-1.fc39.noarch adobe-mappings-cmap-deprecated-20230622-1.fc39.noarch adobe-mappings-pdf-20190401-5.fc39.noarch alsa-lib-1.2.10-3.fc40.aarch64 annobin-docs-12.26-1.fc40.noarch annobin-plugin-gcc-12.26-1.fc40.aarch64 avahi-libs-0.8-24.fc39.aarch64 biber-2.19-3.fc39.noarch brotli-1.1.0-1.fc40.aarch64 brotli-devel-1.1.0-1.fc40.aarch64 bzip2-devel-1.0.8-16.fc39.aarch64 cairo-1.17.8-5.fc40.aarch64 check-0.15.2-10.fc39.aarch64 check-devel-0.15.2-10.fc39.aarch64 cmake-3.27.4-8.fc40.aarch64 cmake-data-3.27.4-8.fc40.noarch cmake-filesystem-3.27.4-8.fc40.aarch64 cmake-rpm-macros-3.27.4-8.fc40.noarch copy-jdk-configs-4.1-3.fc39.noarch cpp-13.2.1-1.fc40.aarch64 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texlive-filehook-11:svn64822-69.fc39.noarch texlive-finstrut-11:svn21719.0.5-69.fc39.noarch texlive-firstaid-11:svn64892-69.fc39.noarch texlive-fix2col-11:svn38770-69.fc39.noarch texlive-float-11:svn15878.1.3d-69.fc39.noarch texlive-fontspec-11:svn63386-69.fc39.noarch texlive-footmisc-11:svn62524-69.fc39.noarch texlive-footnotehyper-11:svn60374-69.fc39.noarch texlive-fp-11:svn49719-69.fc39.noarch texlive-fpl-11:svn54512-69.fc39.noarch texlive-geometry-11:svn61719-69.fc39.noarch texlive-gettitlestring-11:svn53170-69.fc39.noarch texlive-glyphlist-11:svn54074-77.fc39.noarch texlive-graphics-11:svn66204-69.fc39.noarch texlive-graphics-cfg-11:svn41448-69.fc39.noarch texlive-graphics-def-11:svn64487-69.fc39.noarch texlive-grfext-11:svn53024-69.fc39.noarch texlive-grffile-11:svn52756-69.fc39.noarch texlive-gsftopk-11:svn52851-77.fc39.aarch64 texlive-helvetic-11:svn61719-69.fc39.noarch texlive-hobsub-11:svn52810-69.fc39.noarch texlive-hologo-11:svn61719-69.fc39.noarch texlive-hopatch-11:svn65491-69.fc39.noarch texlive-hycolor-11:svn53584-69.fc39.noarch texlive-hypdoc-11:svn65678-69.fc39.noarch texlive-hyperref-11:svn65758-69.fc39.noarch texlive-hyph-utf8-11:svn61719-69.fc39.noarch texlive-hyphen-base-11:svn66413-69.fc39.noarch texlive-hyphenex-11:svn57387-69.fc39.noarch texlive-ifmtarg-11:svn47544-69.fc39.noarch texlive-ifplatform-11:svn45533-69.fc39.noarch texlive-iftex-11:svn61910-69.fc39.noarch texlive-index-11:svn24099.4.1beta-69.fc39.noarch texlive-infwarerr-11:svn53023-69.fc39.noarch texlive-intcalc-11:svn53168-69.fc39.noarch texlive-jknapltx-11:svn19440.0-69.fc39.noarch texlive-kastrup-11:svn15878.0-69.fc39.noarch texlive-knuth-lib-11:svn57963-69.fc39.noarch texlive-knuth-local-11:svn57963-69.fc39.noarch texlive-koma-script-11:svn64685-69.fc39.noarch texlive-kpathsea-11:svn66209-77.fc39.aarch64 texlive-kvdefinekeys-11:svn53193-69.fc39.noarch texlive-kvoptions-11:svn63622-69.fc39.noarch texlive-kvsetkeys-11:svn64632-69.fc39.noarch texlive-l3backend-11:svn65573-69.fc39.noarch texlive-l3experimental-11:svn65621-69.fc39.noarch texlive-l3kernel-11:svn66094-69.fc39.noarch texlive-l3packages-11:svn65722-69.fc39.noarch texlive-latex-11:svn65161-77.fc39.noarch texlive-latex-fonts-11:svn28888.0-69.fc39.noarch texlive-latex-lab-11:svn64892-69.fc39.noarch texlive-latexbug-11:svn63596-69.fc39.noarch texlive-latexconfig-11:svn53525-69.fc39.noarch texlive-letltxmacro-11:svn53022-69.fc39.noarch texlive-lib-11:20230311-77.fc39.aarch64 texlive-lineno-11:svn65586-69.fc39.noarch texlive-listings-11:svn66222-69.fc39.noarch texlive-lm-11:svn65956-69.fc39.noarch texlive-lm-math-11:svn36915.1.959-69.fc39.noarch texlive-logreq-11:svn53003-69.fc39.noarch texlive-ltabptch-11:svn17533.1.74d-69.fc39.noarch texlive-ltxcmds-11:svn56421-69.fc39.noarch texlive-ltxmisc-11:svn21927.0-69.fc39.noarch texlive-lua-alt-getopt-11:svn56414-69.fc39.noarch texlive-lua-uni-algos-11:svn62204-69.fc39.noarch texlive-luabidi-11:svn54512-69.fc39.noarch texlive-luahbtex-11:svn66186-77.fc39.aarch64 texlive-lualatex-math-11:svn61464-69.fc39.noarch texlive-lualibs-11:svn64615-69.fc39.noarch texlive-luaotfload-11:svn64616-77.fc39.noarch texlive-luatex-11:svn66967-77.fc39.aarch64 texlive-luatexbase-11:svn52663-69.fc39.noarch texlive-lwarp-11:svn66259-77.fc39.noarch texlive-makecmds-11:svn15878.0-69.fc39.noarch texlive-makeindex-11:svn62517-77.fc39.aarch64 texlive-marginnote-11:svn48383-69.fc39.noarch texlive-marvosym-11:svn29349.2.2a-69.fc39.noarch texlive-mathpazo-11:svn52663-69.fc39.noarch texlive-mathspec-11:svn42773-69.fc39.noarch texlive-mathtools-11:svn63767-69.fc39.noarch texlive-mdwtools-11:svn15878.1.05.4-69.fc39.noarch texlive-memoir-11:svn65040-69.fc39.noarch texlive-metafont-11:svn66186-77.fc39.aarch64 texlive-metalogo-11:svn18611.0.12-69.fc39.noarch texlive-mflogo-11:svn42428-69.fc39.noarch texlive-mfnfss-11:svn46036-69.fc39.noarch texlive-mfware-11:svn66186-77.fc39.aarch64 texlive-microtype-11:svn66587-69.fc39.noarch texlive-minitoc-11:svn61719-69.fc39.noarch texlive-mnsymbol-11:svn18651.1.4-69.fc39.noarch texlive-modes-11:svn61719-69.fc39.noarch texlive-mparhack-11:svn59066-69.fc39.noarch texlive-mptopdf-11:svn65952-77.fc39.noarch texlive-ms-11:svn57473-69.fc39.noarch texlive-multido-11:svn18302.1.42-69.fc39.noarch texlive-natbib-11:svn20668.8.31b-69.fc39.noarch texlive-newfloat-11:svn52906-69.fc39.noarch texlive-notoccite-11:svn18129.0-69.fc39.noarch texlive-ntgclass-11:svn65522-69.fc39.noarch texlive-oberdiek-11:svn65521-77.fc39.noarch texlive-pagesel-11:svn56105-69.fc39.noarch texlive-palatino-11:svn61719-69.fc39.noarch texlive-paralist-11:svn43021-69.fc39.noarch texlive-parallel-11:svn15878.0-69.fc39.noarch texlive-parskip-11:svn58358-69.fc39.noarch texlive-pdfcol-11:svn64469-69.fc39.noarch texlive-pdfcolfoot-11:svn65512-69.fc39.noarch texlive-pdfcolmk-11:svn52912-69.fc39.noarch texlive-pdfescape-11:svn53082-69.fc39.noarch texlive-pdflscape-11:svn64851-69.fc39.noarch texlive-pdfmanagement-testphase-11:svn66532-69.fc39.noarch texlive-pdfpages-11:svn65319-69.fc39.noarch texlive-pdftex-11:svn66243-77.fc39.aarch64 texlive-pdftexcmds-11:svn55777-69.fc39.noarch texlive-pgf-11:svn65553-69.fc39.noarch texlive-picture-11:svn54867-69.fc39.noarch texlive-placeins-11:svn19848.2.2-69.fc39.noarch texlive-plain-11:svn57963-69.fc39.noarch texlive-polyglossia-11:svn65792-69.fc39.noarch texlive-psfrag-11:svn15878.3.04-69.fc39.noarch texlive-pslatex-11:svn57434-69.fc39.noarch texlive-psnfss-11:svn54694-69.fc39.noarch texlive-pspicture-11:svn15878.0-69.fc39.noarch texlive-pst-3d-11:svn17257.1.10-69.fc39.noarch texlive-pst-coil-11:svn62977-69.fc39.noarch texlive-pst-eps-11:svn15878.1.0-69.fc39.noarch texlive-pst-fill-11:svn60671-69.fc39.noarch texlive-pst-grad-11:svn15878.1.06-69.fc39.noarch texlive-pst-math-11:svn64732-69.fc39.noarch texlive-pst-node-11:svn61838-69.fc39.noarch texlive-pst-ovl-11:svn54963-69.fc39.noarch texlive-pst-plot-11:svn65346-69.fc39.noarch texlive-pst-text-11:svn49542-69.fc39.noarch texlive-pst-tools-11:svn60621-69.fc39.noarch texlive-pst-tree-11:svn60421-69.fc39.noarch texlive-pstricks-11:svn65346-69.fc39.noarch texlive-pstricks-add-11:svn65067-69.fc39.noarch texlive-ragged2e-11:svn66152-69.fc39.noarch texlive-rcs-11:svn15878.0-69.fc39.noarch texlive-realscripts-11:svn56594-69.fc39.noarch texlive-refcount-11:svn53164-69.fc39.noarch texlive-rerunfilecheck-11:svn63869-69.fc39.noarch texlive-rsfs-11:svn15878.0-69.fc39.noarch texlive-sansmath-11:svn17997.1.1-69.fc39.noarch texlive-sansmathaccent-11:svn53628-69.fc39.noarch texlive-sauerj-11:svn15878.0-69.fc39.noarch texlive-section-11:svn20180.0-69.fc39.noarch texlive-seminar-11:svn59801-69.fc39.noarch texlive-sepnum-11:svn20186.2.0-69.fc39.noarch texlive-setspace-11:svn65206-69.fc39.noarch texlive-showexpl-11:svn57414-69.fc39.noarch texlive-stringenc-11:svn52982-69.fc39.noarch texlive-subfig-11:svn15878.1.3-69.fc39.noarch texlive-symbol-11:svn61719-69.fc39.noarch texlive-tex-11:svn66186-77.fc39.aarch64 texlive-tex-ini-files-11:svn40533-69.fc39.noarch texlive-texlive-common-doc-11:svn54176-69.fc39.noarch texlive-texlive-en-11:svn66572-77.fc39.noarch texlive-texlive-msg-translations-11:svn66593-69.fc39.noarch texlive-texlive-scripts-11:svn66584-77.fc39.noarch texlive-texlive.infra-11:svn66512-77.fc39.noarch texlive-textcase-11:svn63868-69.fc39.noarch texlive-thumbpdf-11:svn62518-77.fc39.noarch texlive-times-11:svn61719-69.fc39.noarch texlive-tipa-11:svn29349.1.3-69.fc39.noarch texlive-titlesec-11:svn59845-69.fc39.noarch texlive-tools-11:svn64892-69.fc39.noarch texlive-translator-11:svn59412-69.fc39.noarch texlive-transparent-11:svn64852-69.fc39.noarch texlive-typehtml-11:svn17134.0-69.fc39.noarch texlive-ucharcat-11:svn38907-69.fc39.noarch texlive-ucs-11:svn64114-69.fc39.noarch texlive-underscore-11:svn18261.0-69.fc39.noarch texlive-unicode-data-11:svn64423-69.fc39.noarch texlive-unicode-math-11:svn61719-69.fc39.noarch texlive-uniquecounter-11:svn53162-69.fc39.noarch texlive-url-11:svn32528.3.4-69.fc39.noarch texlive-utopia-11:svn15878.0-69.fc39.noarch texlive-varwidth-11:svn24104.0.92-69.fc39.noarch texlive-xcolor-11:svn63563-69.fc39.noarch texlive-xdvi-11:svn62387-77.fc39.aarch64 texlive-xetex-11:svn66203-77.fc39.aarch64 texlive-xetexconfig-11:svn45845-69.fc39.noarch texlive-xifthen-11:svn38929-69.fc39.noarch texlive-xkeyval-11:svn63616-69.fc39.noarch texlive-xltxtra-11:svn56594-69.fc39.noarch texlive-xpatch-11:svn54563-69.fc39.noarch texlive-xstring-11:svn65551-69.fc39.noarch texlive-xunicode-11:svn30466.0.981-69.fc39.noarch texlive-zapfding-11:svn61719-69.fc39.noarch texlive-zref-11:svn62977-69.fc39.noarch tk-1:8.6.13-1.fc40.aarch64 tk-devel-1:8.6.13-1.fc40.aarch64 tre-0.8.0-41.20140228gitc2f5d13.fc39.aarch64 tre-common-0.8.0-41.20140228gitc2f5d13.fc39.noarch tre-devel-0.8.0-41.20140228gitc2f5d13.fc39.aarch64 ttmkfdir-3.0.9-69.fc40.aarch64 tzdata-java-2023c-3.fc40.noarch urw-base35-bookman-fonts-20200910-18.fc39.noarch urw-base35-c059-fonts-20200910-18.fc39.noarch urw-base35-d050000l-fonts-20200910-18.fc39.noarch urw-base35-fonts-20200910-18.fc39.noarch urw-base35-fonts-common-20200910-18.fc39.noarch urw-base35-gothic-fonts-20200910-18.fc39.noarch urw-base35-nimbus-mono-ps-fonts-20200910-18.fc39.noarch urw-base35-nimbus-roman-fonts-20200910-18.fc39.noarch urw-base35-nimbus-sans-fonts-20200910-18.fc39.noarch urw-base35-p052-fonts-20200910-18.fc39.noarch urw-base35-standard-symbols-ps-fonts-20200910-18.fc39.noarch urw-base35-z003-fonts-20200910-18.fc39.noarch vim-filesystem-2:9.0.1882-1.fc40.noarch xdg-utils-1.1.3-15.fc40.noarch xml-common-0.6.3-61.fc39.noarch xorg-x11-fonts-Type1-7.5-36.fc39.noarch xorg-x11-proto-devel-2023.2-3.fc40.noarch xpdf-libs-1:4.04-10.fc39.aarch64 xz-devel-5.4.4-1.fc39.aarch64 zlib-ng-compat-devel-2.1.3-4.fc40.aarch64 zziplib-0.13.72-5.fc40.aarch64 Complete! Finish: build setup for libsbml-5.19.0-28.fc40.src.rpm Start: rpmbuild libsbml-5.19.0-28.fc40.src.rpm Building target platforms: aarch64 Building for target aarch64 setting SOURCE_DATE_EPOCH=1689811200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.WJssaV + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf libSBML-5.19.0-Source + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/libSBML-5.19.0-core-plus-packages-src.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd libSBML-5.19.0-Source + rm -rf /builddir/build/BUILD/libSBML-5.19.0-Source-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/libSBML-5.19.0-Source-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/libsbml-use-system-minizip-cmake.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/libsbml-fix_install_libpaths.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/time-clock.diff + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/libsbml-fix-jsfile-globs.diff + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/libsbml-drop-formatter-import.diff + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/b12b7f9372424f5271a838c95605d9946c7ea1fb.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + /usr/lib/rpm/rpmuncompress /builddir/build/SOURCES/libsbml-rhbz_2128592.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f + unzip -n /builddir/build/SOURCES/libSBML-5.19.0-render-src.zip Archive: /builddir/build/SOURCES/libSBML-5.19.0-render-src.zip + sed -r -i s/DOXYGEN_MAX_VERSION=1.8.11/DOXYGEN_MAX_VERSION=2.0.0/ configure + find . -type f -name '*.py' -exec /usr/bin/python3 /usr/lib/rpm/redhat/pathfix.py -pn -i /usr/bin/python3 '{}' ';' ./src/bindings/python/libsbml.py: no change ./src/bindings/python/libsbml-doxygen.py: no change ./src/bindings/python/doc-converter/rewrite_pydoc.py: updating ./src/bindings/python/doc-converter/argparse.py: no change ./src/bindings/python/doc-converter/prettytable.py: updating ./src/bindings/python/test.py: updating ./src/bindings/python/test/sbml/TestWriteSBML.py: no change ./src/bindings/python/test/sbml/TestWriteL3SBML.py: no change ./src/bindings/python/test/sbml/TestUnit_newSetters.py: no change ./src/bindings/python/test/sbml/TestUnitKind.py: no change ./src/bindings/python/test/sbml/TestUnitDefinition_newSetters.py: no change ./src/bindings/python/test/sbml/TestUnitDefinition.py: no change ./src/bindings/python/test/sbml/TestUnit.py: no change ./src/bindings/python/test/sbml/TestTrigger.py: no change ./src/bindings/python/test/sbml/TestSyntaxChecker.py: no change ./src/bindings/python/test/sbml/TestStoichiometryMath.py: no change ./src/bindings/python/test/sbml/TestSpecies_newSetters.py: no change ./src/bindings/python/test/sbml/TestSpeciesType_newSetters.py: no change ./src/bindings/python/test/sbml/TestSpeciesType.py: no change ./src/bindings/python/test/sbml/TestSpeciesReference_newSetters.py: no change ./src/bindings/python/test/sbml/TestSpeciesReference.py: no change ./src/bindings/python/test/sbml/TestSpeciesConcentrationRule.py: no change ./src/bindings/python/test/sbml/TestSpecies.py: no change ./src/bindings/python/test/sbml/TestSBase_newSetters.py: no change ./src/bindings/python/test/sbml/TestSBase.py: no change ./src/bindings/python/test/sbml/TestSBMLParentObject.py: no change ./src/bindings/python/test/sbml/TestSBMLNamespaces.py: no change ./src/bindings/python/test/sbml/TestSBMLError.py: no change ./src/bindings/python/test/sbml/TestSBMLDocument.py: no change ./src/bindings/python/test/sbml/TestSBMLConvertStrict.py: no change ./src/bindings/python/test/sbml/TestSBMLConvert.py: no change ./src/bindings/python/test/sbml/TestSBMLConstructorException.py: no change ./src/bindings/python/test/sbml/TestRule_newSetters.py: no change ./src/bindings/python/test/sbml/TestRule.py: no change ./src/bindings/python/test/sbml/TestReadSBML.py: no change ./src/bindings/python/test/sbml/TestReadFromFile9.py: no change ./src/bindings/python/test/sbml/TestReadFromFile8.py: no change ./src/bindings/python/test/sbml/TestReadFromFile7.py: no change ./src/bindings/python/test/sbml/TestReadFromFile6.py: no change ./src/bindings/python/test/sbml/TestReadFromFile5.py: no change ./src/bindings/python/test/sbml/TestReadFromFile4.py: no change ./src/bindings/python/test/sbml/TestReadFromFile3.py: no change ./src/bindings/python/test/sbml/TestReadFromFile2.py: no change ./src/bindings/python/test/sbml/TestReadFromFile1.py: no change ./src/bindings/python/test/sbml/TestReaction_newSetters.py: no change ./src/bindings/python/test/sbml/TestReaction.py: no change ./src/bindings/python/test/sbml/TestRateRule.py: no change ./src/bindings/python/test/sbml/TestPriority.py: no change ./src/bindings/python/test/sbml/TestParameter_newSetters.py: no change ./src/bindings/python/test/sbml/TestParameterRule.py: no change ./src/bindings/python/test/sbml/TestParameter.py: no change ./src/bindings/python/test/sbml/TestModifierSpeciesReference.py: no change ./src/bindings/python/test/sbml/TestModel_newSetters.py: no change ./src/bindings/python/test/sbml/TestModel.py: no change ./src/bindings/python/test/sbml/TestListOf.py: no change ./src/bindings/python/test/sbml/TestL3Unit.py: no change ./src/bindings/python/test/sbml/TestL3Trigger.py: no change ./src/bindings/python/test/sbml/TestL3SpeciesReference.py: no change ./src/bindings/python/test/sbml/TestL3Species.py: no change ./src/bindings/python/test/sbml/TestL3Reaction.py: no change ./src/bindings/python/test/sbml/TestL3Parameter.py: no change ./src/bindings/python/test/sbml/TestL3Model.py: no change ./src/bindings/python/test/sbml/TestL3LocalParameter.py: no change ./src/bindings/python/test/sbml/TestL3KineticLaw.py: no change ./src/bindings/python/test/sbml/TestL3Event.py: no change ./src/bindings/python/test/sbml/TestL3Compartment.py: no change ./src/bindings/python/test/sbml/TestKineticLaw_newSetters.py: no change ./src/bindings/python/test/sbml/TestKineticLaw.py: no change ./src/bindings/python/test/sbml/TestInternalConsistencyChecks.py: no change ./src/bindings/python/test/sbml/TestInitialAssignment_newSetters.py: no change ./src/bindings/python/test/sbml/TestInitialAssignment.py: no change ./src/bindings/python/test/sbml/TestGetMultipleObjects.py: no change ./src/bindings/python/test/sbml/TestFunctionDefinition_newSetters.py: no change ./src/bindings/python/test/sbml/TestFunctionDefinition.py: no change ./src/bindings/python/test/sbml/TestEvent_newSetters.py: no change ./src/bindings/python/test/sbml/TestEventAssignment_newSetters.py: no change ./src/bindings/python/test/sbml/TestEventAssignment.py: no change ./src/bindings/python/test/sbml/TestEvent.py: no change ./src/bindings/python/test/sbml/TestDelay.py: no change ./src/bindings/python/test/sbml/TestCopyAndClone.py: no change ./src/bindings/python/test/sbml/TestConstraint_newSetters.py: no change ./src/bindings/python/test/sbml/TestConstraint.py: no change ./src/bindings/python/test/sbml/TestConsistencyChecks.py: no change ./src/bindings/python/test/sbml/TestCompartment_newSetters.py: no change ./src/bindings/python/test/sbml/TestCompartmentVolumeRule.py: no change ./src/bindings/python/test/sbml/TestCompartmentType_newSetters.py: no change ./src/bindings/python/test/sbml/TestCompartmentType.py: no change ./src/bindings/python/test/sbml/TestCompartment.py: no change ./src/bindings/python/test/sbml/TestAssignmentRule.py: no change ./src/bindings/python/test/sbml/TestAncestor.py: no change ./src/bindings/python/test/sbml/TestAlgebraicRule.py: no change ./src/bindings/python/test/sbml/TestRequiredElements.py: no change ./src/bindings/python/test/sbml/TestRequiredAttributes.py: no change ./src/bindings/python/test/xml/TestXMLTriple.py: no change ./src/bindings/python/test/xml/TestXMLToken_newSetters.py: no change ./src/bindings/python/test/xml/TestXMLToken.py: no change ./src/bindings/python/test/xml/TestXMLOutputStream.py: no change ./src/bindings/python/test/xml/TestXMLNode_newSetters.py: no change ./src/bindings/python/test/xml/TestXMLNode.py: no change ./src/bindings/python/test/xml/TestXMLNamespaces.py: no change ./src/bindings/python/test/xml/TestXMLErrorC.py: no change ./src/bindings/python/test/xml/TestXMLError.py: no change ./src/bindings/python/test/xml/TestXMLCopyAndClone.py: no change ./src/bindings/python/test/xml/TestXMLAttributesC.py: no change ./src/bindings/python/test/xml/TestXMLAttributes.py: no change ./src/bindings/python/test/math/TestValidASTNode.py: no change ./src/bindings/python/test/math/TestReadMathML.py: no change ./src/bindings/python/test/math/TestMathReadFromFile2.py: no change ./src/bindings/python/test/math/TestMathReadFromFile1.py: no change ./src/bindings/python/test/math/TestL3FormulaParserC.py: no change ./src/bindings/python/test/math/TestASTNode.py: no change ./src/bindings/python/test/math/TestWriteMathML.py: no change ./src/bindings/python/test/annotation/TestValidation.py: no change ./src/bindings/python/test/annotation/TestRDFAnnotationC.py: no change ./src/bindings/python/test/annotation/TestRDFAnnotation2.py: no change ./src/bindings/python/test/annotation/TestRDFAnnotation.py: no change ./src/bindings/python/test/annotation/TestModelHistory_newSetters.py: no change ./src/bindings/python/test/annotation/TestModelHistory.py: no change ./src/bindings/python/test/annotation/TestModelCreator_newSetters.py: no change ./src/bindings/python/test/annotation/TestL3ModelHistory.py: no change ./src/bindings/python/test/annotation/TestDate_newSetters.py: no change ./src/bindings/python/test/annotation/TestCVTerms_newSetters.py: no change ./src/bindings/python/test/annotation/TestCVTerms.py: no change ./src/bindings/python/test/annotation/TestAnnotationCopyAndClone.py: no change ./src/bindings/swig/swigdoc.py: updating ./src/bindings/swig/libsbmlutils.py: updating ./src/bindings/swig/argparse.py: no change ./examples/python/append_to_note.py: updating ./examples/python/readSBML.py: updating ./examples/python/replaceOneFD.py: updating ./examples/python/inlineFunctionDefinitions.py: updating ./examples/python/unsetNotes.py: updating ./examples/python/promoteParameters.py: updating ./examples/python/unsetAnnotation.py: updating ./examples/python/evaluateCustomMath.py: updating ./examples/python/printRegisteredPackages.py: updating ./examples/python/translateMath.py: updating ./examples/python/getAllElementsWithNotes.py: updating ./examples/python/echoSBML.py: updating ./examples/python/validateSBML.py: updating ./examples/python/addCVTerms.py: updating ./examples/python/stripPackage.py: updating ./examples/python/addCustomValidator.py: updating ./examples/python/printAnnotation.py: updating ./examples/python/addingEvidenceCodes_2.py: updating ./examples/python/distrib/createNormalExample.py: updating ./examples/python/distrib/createStatisticsExample .py: updating ./examples/python/createExampleSBML.py: updating ./examples/python/renameSId.py: no change ./examples/python/inlineInitialAssignments.py: updating ./examples/python/comp/flattenModel.py: updating ./examples/python/groups/print_groups.py: updating ./examples/python/groups/groups_example1.py: updating ./examples/python/addingEvidenceCodes_1.py: updating ./examples/python/printSBML.py: updating ./examples/python/appendAnnotation.py: updating ./examples/python/setIdFromNames.py: updating ./examples/python/render/addRenderInformation.py: no change ./examples/python/render/printRenderInformation.py: no change ./examples/python/render/removeRenderInformation.py: no change ./examples/python/stringInput.py: updating ./examples/python/createSimpleModel.py: updating ./examples/python/fbc/fbc_example1.py: updating ./examples/python/fbc/print_gene_product_association.py: updating ./examples/python/fbc/convertFbcToCobra.py: updating ./examples/python/fbc/convertCobraToFbc.py: updating ./examples/python/printUnits.py: updating ./examples/python/multi/multi_example2.py: no change ./examples/python/multi/multi_example3.py: no change ./examples/python/multi/multi_example1.py: no change ./examples/python/multi/printMulti.py: no change ./examples/python/layout/convertLayout.py: updating ./examples/python/layout/example1-L3.py: updating ./examples/python/layout/example1.py: updating ./examples/python/addModelHistory.py: updating ./examples/python/callExternalValidator.py: updating ./examples/python/validateSBMLWithCallback.py: updating ./examples/python/convertSBML.py: updating ./examples/python/qual/qual_example1.py: updating ./examples/python/printMath.py: updating ./examples/python/printsupported.py: updating ./examples/python/printNotes.py: updating ./docs/src/utilities/compare-classes.py: updating ./docs/src/utilities/generate-cplusplus-class-names.py: updating ./docs/src/utilities/generate-pkg-stylesheet.py: updating ./docs/src/utilities/generate-converters-list.py: updating ./docs/src/utilities/pythondocpreprocessor.py: updating ./docs/src/utilities/generate-extensions-summary.py: updating ./docs/src/utilities/generate-class-name-list.py: updating ./docs/src/utilities/compare-constants.py: updating ./docs/src/filters/doc-filter-csharp.py: updating ./docs/src/filters/doc-filter-c.py: updating ./docs/src/filters/doc-filter-python.py: updating ./docs/src/python-substitutions/CompPkgNamespaces.py: no change ./docs/src/python-substitutions/DateList.py: no change ./docs/src/python-substitutions/libsbml.py: no change ./docs/src/python-substitutions/LayoutPkgNamespaces.py: no change ./docs/src/python-substitutions/FbcPkgNamespaces.py: no change ./docs/src/python-substitutions/ModelCreatorList.py: no change ./docs/src/python-substitutions/SBaseList.py: no change ./docs/src/python-substitutions/SBMLNamespacesList.py: no change ./docs/src/python-substitutions/CVTermList.py: no change ./docs/src/python-substitutions/ostringstream.py: no change ./docs/src/python-substitutions/QualPkgNamespaces.py: no change ./docs/src/python-substitutions/ASTNodeList.py: no change ./docs/src/python-substitutions/ostream.py: no change ./docs/src/python-substitutions/GroupsPkgNamespaces.py: no change + python3 -m lib2to3 -f print -w docs/src/filters/ RefactoringTool: Refactored docs/src/filters/doc-filter-c.py RefactoringTool: Refactored docs/src/filters/doc-filter-csharp.py RefactoringTool: Refactored docs/src/filters/doc-filter-python.py RefactoringTool: Files that were modified: RefactoringTool: docs/src/filters/doc-filter-c.py RefactoringTool: docs/src/filters/doc-filter-csharp.py RefactoringTool: docs/src/filters/doc-filter-python.py --- docs/src/filters/doc-filter-c.py (original) +++ docs/src/filters/doc-filter-c.py (refactored) @@ -92,7 +92,7 @@ global libsbml_classes if len(args) != 2: - print main.__doc__ + print(main.__doc__) sys.exit(1) # Check if the environment variable LIBSBML_CLASSES_LIST is set. --- docs/src/filters/doc-filter-csharp.py (original) +++ docs/src/filters/doc-filter-csharp.py (refactored) @@ -67,7 +67,7 @@ """ if len(args) != 2: - print main.__doc__ + print(main.__doc__) sys.exit(1) istream = open(args[1], 'r') --- docs/src/filters/doc-filter-python.py (original) +++ docs/src/filters/doc-filter-python.py (refactored) @@ -284,7 +284,7 @@ global libsbml_enums if len(args) != 2: - print main.__doc__ + print(main.__doc__) sys.exit(1) # Check if the environment variable LIBSBML_CLASSES_LIST is set. + python3 -m lib2to3 -f next -w docs RefactoringTool: Refactored docs/src/utilities/generate-pkg-stylesheet.py RefactoringTool: Files that were modified: --- docs/src/utilities/generate-pkg-stylesheet.py (original) +++ docs/src/utilities/generate-pkg-stylesheet.py (refactored) @@ -168,7 +168,7 @@ # Next, read the source dir to find out the L3 packages available, and # extract the names of the libSBML object classes in each package. known_pkgs = [entry[0] for entry in color_table] - top_root, top_level_dirs, top_level_files = os.walk(src_dir).next() + top_root, top_level_dirs, top_level_files = next(os.walk(src_dir)) found_pkgs = [pkg for pkg in known_pkgs if pkg in top_level_dirs] # Now generate CSS styling that uses attribute selectors specialized to RefactoringTool: docs/src/utilities/generate-pkg-stylesheet.py + grep -e 'This file was automatically generated by SWIG' -r . -l + xargs rm + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.7PKGTa + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libSBML-5.19.0-Source + mkdir -p build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX ++ python3-config --abiflags ++ python3-config --abiflags + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -B build -DENABLE_LAYOUT=ON -DENABLE_QUAL=ON -DENABLE_COMP=ON -DENABLE_FBC=ON -DENABLE_RENDER=ON -DENABLE_GROUPS=ON -DENABLE_MULTI=ON -DCSHARP_COMPILER:FILEPATH=/usr/bin/mcs -DWITH_PYTHON:BOOL=ON -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.12 -DPYTHON_LIBRARY:FILEPATH=/usr/lib64/libpython3.12.so -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DPYTHON_USE_DYNAMIC_LOOKUP:BOOL=ON -DWITH_PERL:BOOL=ON -DPERL_EXECUTABLE:FILEPATH=/usr/bin/perl -DPERL_INCLUDE_PATH:PATH=/usr/lib64/perl5/CORE -DPERL_LIBRARY:FILEPATH=/usr/lib64/libperl.so -DWITH_RUBY:BOOL=ON -DRUBY_SITEARCH_DIR:PATH=/usr/local/lib64/ruby/site_ruby -DRUBY_SITELIB_DIR:PATH=/usr/local/share/ruby/site_ruby -DRUBY_VENDORARCH_DIR:PATH=/usr/lib64/ruby/vendor_ruby -DRUBY_VENDORLIB_DIR:PATH=/usr/share/ruby/vendor_ruby -DRUBY_HAS_VENDOR_RUBY:BOOL=ON -DWITH_R:BOOL=ON -DR_INCLUDE_DIRS:PATH=/usr/include/R -DWITH_CHECK=ON -DCMAKE_INSTALL_LIBDIR:PATH=/usr/lib64 -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DWITH_MATLAB:BOOL=OFF -Wno-dev -DEXIT_ON_ERROR:BOOL=ON -- The C compiler identification is GNU 13.2.1 -- The CXX compiler identification is GNU 13.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Found SWIG: /usr/bin/swig (found version "4.1.1") -- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so -- Looking for BZ2_bzCompressInit in /usr/lib64/libbz2.so - found -- Looking for gzopen in /usr/lib64/libz.so -- Looking for gzopen in /usr/lib64/libz.so - found -- Found PkgConfig: /usr/bin/pkg-config (found version "1.9.5") -- Checking for module 'minizip' -- Found minizip, version 3.0.7 -- Performing Test CHECK_CHECK_TEST -- Performing Test CHECK_CHECK_TEST - Success -- Looking for include file check.h -- Looking for include file check.h - found -- Looking for include file expat.h -- Looking for include file expat.h - found -- Looking for include file errno.h -- Looking for include file errno.h - found -- Looking for include file ieeefp.h -- Looking for include file ieeefp.h - not found -- Looking for include file math.h -- Looking for include file math.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file float.h -- Looking for include file float.h - found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Found PythonInterp: /usr/bin/python3 (found version "3.12") -- Found Perl: /usr/bin/perl (found version "5.38.0") -- Found PerlLibs: /usr/lib64/libperl.so (found version "5.38.0") -- Found PythonLibs: /usr/lib64/libpython3.12.so (found version "3.12.0rc2") -- Found Ruby: /usr/bin/ruby (found suitable version "3.2.2", minimum required is "1.8.0") -- ---------------------------------------------------------------------- libSBML version 5.19.0 ---------------------------------------------------------------------- More information and the latest version are available online at http://sbml.org/Software/libSBML Please report problems using the issue tracker at http://sbml.org/Software/libsbml/issue-tracker To contact the developers directly, email libsbml-team@googlegroups.com Configured on host '12a5ae3735de44d4b0a7a8885cd6db51' host type = Linux host operating system = Linux 6.2.9-300.fc38.aarch64 host CPU architecture = aarch64 General build flags: CC = /usr/bin/gcc CXX = /usr/bin/g++ CPPFLAGS = -DLINUX CFLAGS = -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC CXXFLAGS = -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC LDFLAGS = -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes XML parser library configuration: XML library = libxml2 CPPFLAGS for XML = -I/usr/include/libxml2 LIBS for XML = /usr/lib64/libxml2.so Other libSBML configuration settings: Installation $prefix = /usr -- Value of $LD_LIBRARY_PATH = -- Using SWIG = /usr/bin/swig (Version 4.1.1) -- Using Python = /usr/bin/python3 -- Using Perl = /usr/bin/perl -- Using Ruby = -- Using R = /usr/bin/R -- Using libcheck = /usr/lib64/libcheck.so -- Using C++ namespace ('libsbml') = no -- -- Build examples = no -- -- -- Support for SBML Level 3 Packages: -- SBML 'comp' package = ON -- SBML 'distrib' package = OFF -- SBML 'fbc' package = ON -- SBML 'groups' package = ON -- SBML 'l3v2extendedmath' package = ON -- SBML 'layout' package = ON -- SBML 'multi' package = ON -- SBML 'qual' package = ON -- SBML 'render' package = ON -- -- Other potentially important settings: -- Compression support is enabled for .zip and .gz files -- Compression support is enabled for .bz2 files -- ---------------------------------------------------------------------- -- Configuring done (4.0s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP CMAKE_SKIP_INSTALL_RPATH CSHARP_COMPILER INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/libSBML-5.19.0-Source/build + /usr/bin/make -O -j4 V=1 VERBOSE=1 -C build make: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/cmake -S/builddir/build/BUILD/libSBML-5.19.0-Source -B/builddir/build/BUILD/libSBML-5.19.0-Source/build --check-build-system CMakeFiles/Makefile.cmake 0 make: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSBML-5.19.0-Source/build/CMakeFiles 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'/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make src/bindings/python/CMakeFiles/binding_python_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/CMakeFiles/sbml.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/CMakeFiles/sbml-static.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 0%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegister.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.cpp:36: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 0%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompExtension.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompExtension.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegister.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.cpp:36: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 0%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function ‘Submodel* CompModelPlugin::createSubmodel()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:318:3: note: in expansion of macro ‘COMP_CREATE_NS’ 318 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function ‘Port* CompModelPlugin::createPort()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:459:3: note: in expansion of macro ‘COMP_CREATE_NS’ 459 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 0%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function ‘Submodel* CompModelPlugin::createSubmodel()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:318:3: note: in expansion of macro ‘COMP_CREATE_NS’ 318 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp: In member function ‘Port* CompModelPlugin::createPort()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.cpp:459:3: note: in expansion of macro ‘COMP_CREATE_NS’ 459 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 0%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function ‘ModelDefinition* CompSBMLDocumentPlugin::createModelDefinition()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:405:3: note: in expansion of macro ‘COMP_CREATE_NS’ 405 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function ‘ExternalModelDefinition* CompSBMLDocumentPlugin::createExternalModelDefinition()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:546:3: note: in expansion of macro ‘COMP_CREATE_NS’ 546 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 0%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function ‘ModelDefinition* CompSBMLDocumentPlugin::createModelDefinition()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:405:3: note: in expansion of macro ‘COMP_CREATE_NS’ 405 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp: In member function ‘ExternalModelDefinition* CompSBMLDocumentPlugin::createExternalModelDefinition()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.cpp:546:3: note: in expansion of macro ‘COMP_CREATE_NS’ 546 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 0%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:41: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual SBase* CompSBasePlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:175:7: note: in expansion of macro ‘COMP_CREATE_NS’ 175 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘ReplacedElement* CompSBasePlugin::createReplacedElement()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:378:3: note: in expansion of macro ‘COMP_CREATE_NS’ 378 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘ReplacedBy* CompSBasePlugin::createReplacedBy()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:452:3: note: in expansion of macro ‘COMP_CREATE_NS’ 452 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual void CompSBasePlugin::createListOfReplacedElements()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:559:5: note: in expansion of macro ‘COMP_CREATE_NS’ 559 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 0%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/extension/CompSBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:41: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual SBase* CompSBasePlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:175:7: note: in expansion of macro ‘COMP_CREATE_NS’ 175 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘ReplacedElement* CompSBasePlugin::createReplacedElement()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:378:3: note: in expansion of macro ‘COMP_CREATE_NS’ 378 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘ReplacedBy* CompSBasePlugin::createReplacedBy()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:452:3: note: in expansion of macro ‘COMP_CREATE_NS’ 452 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp: In member function ‘virtual void CompSBasePlugin::createListOfReplacedElements()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBasePlugin.cpp:559:5: note: in expansion of macro ‘COMP_CREATE_NS’ 559 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 0%] Swig Perl bindings source cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py --language perl --top /builddir/build/BUILD/libSBML-5.19.0-Source --master /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/libsbml.i --output /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl/LibSBML.pod --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_LAYOUT --define USE_MULTI --define USE_QUAL --define USE_RENDER --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_MULTI --define USE_QUAL --define USE_RENDER cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl && /usr/bin/swig -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/ -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/include -c++ -perl5 -proxy -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl/LibSBML_wrap.cpp /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/LibSBML.i /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:447: SyntaxWarning: invalid escape sequence '\s' p = re.compile('(\s+?)\*/', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:502: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('/\*\*(\s+\*)+', r'/** \n *', docstring) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:506: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('\*/', r'* @internal\n */', docstring) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:851: SyntaxWarning: invalid escape sequence '\W' p = re.compile('(\W+)(\w+?)::(\w+\s*\([^)]*?\))') /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:994: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@link\s*\*?\s+(\w+)?#(\w+)\s*\*?\s+(\w+)\s*@endlink') /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1010: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^\s*\*\s+@par(\s)', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1015: SyntaxWarning: invalid escape sequence '\s' p = re.compile('(@if|@ifnot)[\s*]+(\w+)[\s*]+(.+?)((@else)\s+(.+?))?@endif', re.DOTALL) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1024: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s+)\*\s*$', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1026: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^((?!\s+\Z)\s+)$', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1028: SyntaxWarning: invalid escape sequence '\Z' p = re.compile('^(?!\Z)$', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1041: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@section\s+[^\s]+\s+(.*)$', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1043: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@subsection\s+[^\s]+\s+(.*)$', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1045: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@subsubsection\s+[^\s]+\s+(.*)$', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1051: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@image\s+html+\s+([^\s]+).*$', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1053: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@image\s+latex+\s+([^\s]+).*$', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1075: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@c(\n[ \t]*\*[ \t]*)([^ ,;()/*\n\t<]+)', r'\1\2', docstring) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1077: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@p(\n[ \t]*\*[ \t]+)([^ ,.:;()/*\n\t<]+)', r'\1\2', docstring) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1079: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@em(\n[ \t]*\*[ \t]*)([^ ,.:;()/*\n\t<]+)', r'\1\2', docstring) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1085: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s+\*\s+)(@li\s+.*?)(\s+)(\*/|

\s+\*\s+(?!@li\s))', re.MULTILINE|re.DOTALL) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1090: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s+\*\s+)(@deprecated\s)((\S|\s)+?)(

|\*/)', re.MULTILINE|re.DOTALL) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1111: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s+)\*\s+\*\s+@', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1114: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s*)\*\s*

', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1116: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s*)\*?\s*

((\s+\*)+\s+

)+', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1119: SyntaxWarning: invalid escape sequence '\s' p = re.compile('

([\s*]*

)+', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1142: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@ref\s+\*?\s*(\w+)', re.DOTALL) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1227: SyntaxWarning: invalid escape sequence '\s' docstring = re.sub('(@see\s+\w+)::', r'\1#', docstring) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1235: SyntaxWarning: invalid escape sequence '\s' docstring = re.sub('(@see\s+)([\w:.]+)\(', r'\1#\2(', docstring) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1254: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@link([\s/*]+[\w\s,.:#()*]+[\s/*]*[\w():#]+[\s/*]*)@endlink', re.DOTALL) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1284: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@par(\s)', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1430: SyntaxWarning: invalid escape sequence '\s' p = re.compile('(\s+)(\S+?)::(\w+\s*)(\([^)]*?\))', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1432: SyntaxWarning: invalid escape sequence '\s' p = re.compile('(@see\s+)(\w+\s*)(\([^)]*?\))') /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1452: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^\s+(\S*\s*)', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1456: SyntaxWarning: invalid escape sequence '\S' p = re.compile('^[ \t]+(\S)', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1472: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@c(\n[ \t]*\*[ \t]*)([^ ,.:;()/*\n\t<]+)', r'\1C<\2>', docstring) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1474: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@p(\n[ \t]*\*[ \t]+)([^ ,.:;()/*\n\t<]+)', r'\1C<\2>', docstring) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1476: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@em(\n[ \t]*\*[ \t]*)([^ ,.:;()/*\n\t<]+)', r'\1I<\2>', docstring) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1743: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@copy(details|doc)\s+(\w+)') /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1755: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@htmlinclude\s+(\*\s+)*([-\w."\']+)', re.DOTALL) #' /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1760: SyntaxWarning: invalid escape sequence '\*' p = re.compile('^([ \t]*\*)[ \t]+\*[ \t]*$', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/swigdoc.py:1762: SyntaxWarning: invalid escape sequence '\*' p = re.compile('^([ \t]*\*[ \t]*)\n[ \t]*\*[ \t]*\n[ \t]*\*[ \t]*@li', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/swig/libsbmlutils.py:134: SyntaxWarning: invalid escape sequence '\s' match = re.search('(@class|@enum)\s+(\w+)', line) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/swig/libsbmlutils.py:144: SyntaxWarning: invalid escape sequence '\s' match = re.search('%template\s*\(([^)]+)\)', line) /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLInputStream.h:241: Warning 314: 'next' is a perl keyword /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:816: Warning 509: Overloaded method SBase::getAncestorOfType(int,std::string const &) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:864: Warning 509: as it is shadowed by SBase::getAncestorOfType(int,std::string const) const. /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:344: Warning 509: Overloaded method GraphicalPrimitive2D::setFillRule(FillRule_t const) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:328: Warning 509: as it is shadowed by GraphicalPrimitive2D::setFillRule(GraphicalPrimitive2D::FILL_RULE). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.h:389: Warning 509: Overloaded method GradientBase::setSpreadMethod(GradientSpreadMethod_t const) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.h:373: Warning 509: as it is shadowed by GradientBase::setSpreadMethod(GradientBase::SPREADMETHOD). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Text.h:448: Warning 509: Overloaded method Text::setFontWeight(Text::FONT_WEIGHT) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Text.h:444: Warning 509: as it is shadowed by Text::setFontWeight(FontWeight_t const). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Text.h:486: Warning 509: Overloaded method Text::setFontStyle(Text::FONT_STYLE) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Text.h:481: Warning 509: as it is shadowed by Text::setFontStyle(FontStyle_t const). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Text.h:522: Warning 509: Overloaded method Text::setTextAnchor(Text::TEXT_ANCHOR) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Text.h:517: Warning 509: as it is shadowed by Text::setTextAnchor(HTextAnchor_t const). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Text.h:559: Warning 509: Overloaded method Text::setVTextAnchor(Text::TEXT_ANCHOR) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Text.h:554: Warning 509: as it is shadowed by Text::setVTextAnchor(VTextAnchor_t const). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:537: Warning 509: Overloaded method RenderGroup::setFontWeight(Text::FONT_WEIGHT) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:533: Warning 509: as it is shadowed by RenderGroup::setFontWeight(FontWeight_t const). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:575: Warning 509: Overloaded method RenderGroup::setFontStyle(Text::FONT_STYLE) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:570: Warning 509: as it is shadowed by RenderGroup::setFontStyle(FontStyle_t const). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:612: Warning 509: Overloaded method RenderGroup::setTextAnchor(Text::TEXT_ANCHOR) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:607: Warning 509: as it is shadowed by RenderGroup::setTextAnchor(HTextAnchor_t const). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:684: Warning 509: Overloaded method RenderGroup::setVTextAnchor(VTextAnchor_t const) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:644: Warning 509: as it is shadowed by RenderGroup::setVTextAnchor(Text::TEXT_ANCHOR). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:687: Warning 509: Overloaded method RenderGroup::setVtextAnchor(VTextAnchor_t const) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:648: Warning 509: as it is shadowed by RenderGroup::setVtextAnchor(Text::TEXT_ANCHOR). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:915: Warning 509: Overloaded method DefaultValues::setSpreadMethod(GradientSpreadMethod_t const) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:900: Warning 509: as it is shadowed by DefaultValues::setSpreadMethod(GradientBase::SPREADMETHOD const). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1146: Warning 509: Overloaded method DefaultValues::setFillRule(FillRule_t) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1130: Warning 509: as it is shadowed by DefaultValues::setFillRule(GraphicalPrimitive2D::FILL_RULE const). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1266: Warning 509: Overloaded method DefaultValues::setFontWeight(FontWeight_t) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1250: Warning 509: as it is shadowed by DefaultValues::setFontWeight(Text::FONT_WEIGHT const). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1314: Warning 509: Overloaded method DefaultValues::setFontStyle(FontStyle_t) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1298: Warning 509: as it is shadowed by DefaultValues::setFontStyle(Text::FONT_STYLE const). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1362: Warning 509: Overloaded method DefaultValues::setTextAnchor(HTextAnchor_t) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1346: Warning 509: as it is shadowed by DefaultValues::setTextAnchor(Text::TEXT_ANCHOR const). /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1410: Warning 509: Overloaded method DefaultValues::setVTextAnchor(VTextAnchor_t) effectively ignored, /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:1394: Warning 509: as it is shadowed by DefaultValues::setVTextAnchor(Text::TEXT_ANCHOR const). make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 0%] Built target binding_perl_swig make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/ruby /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 0%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/CompBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/CompBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/CompBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/CompBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/CompBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/CompBase.h:52, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/CompBase.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/set:62, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/CompBase.h:49: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 0%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/CompBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/CompBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/CompBase.h:52, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/CompBase.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/set:62, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/CompBase.h:49: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 0%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Deletion.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Deletion.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Deletion.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Deletion.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 0%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Deletion.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Deletion.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ExternalModelDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function ‘virtual SBase* ListOfDeletions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:167:5: note: in expansion of macro ‘COMP_CREATE_NS’ 167 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfDeletions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp: In member function ‘virtual SBase* ListOfDeletions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfDeletions.cpp:167:5: note: in expansion of macro ‘COMP_CREATE_NS’ 167 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 0%] Swig Ruby source cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby && /usr/bin/swig -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/ruby/../swig/ -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/ruby -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/include -c++ -ruby -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/ruby/libsbml.i /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/ruby/../swig/render-package.i:118: Warning 801: Wrong class name (corrected to `Double_array') /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/ruby/../swig/render-package.i:118: Warning 801: Wrong class name (corrected to `Double_array') /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/ruby/../swig/render-package.i:119: Warning 801: Wrong class name (corrected to `Int_array') /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/ruby/../swig/render-package.i:119: Warning 801: Wrong class name (corrected to `Int_array') make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 1%] Built target binding_ruby_swig make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_swig.dir/build.make src/bindings/r/CMakeFiles/binding_r_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/r /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/CMakeFiles/binding_r_swig.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_swig.dir/build.make src/bindings/r/CMakeFiles/binding_r_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp: In member function ‘virtual SBase* ListOfExternalModelDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:160:5: note: in expansion of macro ‘COMP_CREATE_NS’ 160 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp: In member function ‘virtual SBase* ListOfExternalModelDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.cpp:160:5: note: in expansion of macro ‘COMP_CREATE_NS’ 160 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp: In member function ‘virtual SBase* ListOfModelDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:160:5: note: in expansion of macro ‘COMP_CREATE_NS’ 160 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp: In member function ‘virtual SBase* ListOfModelDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfModelDefinitions.cpp:160:5: note: in expansion of macro ‘COMP_CREATE_NS’ 160 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function ‘virtual SBase* ListOfPorts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:159:5: note: in expansion of macro ‘COMP_CREATE_NS’ 159 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfPorts.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp: In member function ‘virtual SBase* ListOfPorts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfPorts.cpp:159:5: note: in expansion of macro ‘COMP_CREATE_NS’ 159 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp: In member function ‘virtual SBase* ListOfReplacedElements::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:123:5: note: in expansion of macro ‘COMP_CREATE_NS’ 123 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfReplacedElements.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp: In member function ‘virtual SBase* ListOfReplacedElements::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfReplacedElements.cpp:123:5: note: in expansion of macro ‘COMP_CREATE_NS’ 123 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function ‘virtual SBase* ListOfSubmodels::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:159:5: note: in expansion of macro ‘COMP_CREATE_NS’ 159 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ListOfSubmodels.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp: In member function ‘virtual SBase* ListOfSubmodels::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ListOfSubmodels.cpp:159:5: note: in expansion of macro ‘COMP_CREATE_NS’ 159 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ModelDefinition.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ModelDefinition.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ModelDefinition.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ModelDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ModelDefinition.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ModelDefinition.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ModelDefinition.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 1%] Swig: R Bindings cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r && /usr/bin/cmake -DCUR_BIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r" -DBIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.19.0-Source/build" -DCUR_SRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/r" -DSRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.19.0-Source" -DCMAKE_COMMAND="/usr/bin/cmake" -DPYTHON_EXECUTABLE="/usr/bin/python3" -DSWIG_SWIGDOCDEFINES="" -DSWIG_ARGS="-DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER" -DSWIG_EXECUTABLE="/usr/bin/swig" -DLIBSBML_REMOVE_WRAPPERS=OFF -P /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/r/swig-binding.cmake cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r && /usr/bin/cmake -DFILENAME="/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libSBML.R" -P /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/r/patch-swig-file.cmake -- Patched libSBML.R cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r && /usr/bin/cmake -DFILENAME="/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libsbml_wrap.cpp" -P /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/r/patch-swig-file.cmake -- Patched libsbml_wrap.cpp /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLInputStream.h:241: Warning 314: 'next' is a R keyword, renaming to '_next' make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Built target binding_r_swig make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Port.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Port.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Port.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Port.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Port.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Port.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Port.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Port.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Port.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Port.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Port.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Port.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Port.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Port.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ReplacedBy.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ReplacedBy.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ReplacedBy.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ReplacedBy.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedBy.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ReplacedBy.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ReplacedBy.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ReplacedBy.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ReplacedBy.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Replacing.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Replacing.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Replacing.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Replacing.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Replacing.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Replacing.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Replacing.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/ReplacedElement.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function ‘SBaseRef* SBaseRef::createSBaseRef()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:557:5: note: in expansion of macro ‘COMP_CREATE_NS’ 557 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function ‘virtual SBase* SBaseRef::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:676:7: note: in expansion of macro ‘COMP_CREATE_NS’ 676 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:687:7: note: in expansion of macro ‘COMP_CREATE_NS’ 687 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Replacing.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Replacing.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Replacing.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Replacing.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/sbml/Submodel.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.h:150, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/RateRule.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:40: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In member function ‘Deletion* Submodel::createDeletion()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:502:3: note: in expansion of macro ‘COMP_CREATE_NS’ 502 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/CompFlatteningConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/CompFlatteningConverter.h:492, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/CompFlatteningConverter.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/CompFlatteningConverter.h:491: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLFileResolver.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLFileResolver.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLFileResolver.h:66, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLFileResolver.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 2%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/SBaseRef.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function ‘SBaseRef* SBaseRef::createSBaseRef()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:557:5: note: in expansion of macro ‘COMP_CREATE_NS’ 557 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp: In member function ‘virtual SBase* SBaseRef::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:676:7: note: in expansion of macro ‘COMP_CREATE_NS’ 676 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.cpp:687:7: note: in expansion of macro ‘COMP_CREATE_NS’ 687 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolver.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolver.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolver.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolver.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLResolver.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLResolver.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLResolver.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLResolver.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 3%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLResolverRegistry.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLResolverRegistry.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLResolverRegistry.cpp:39: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLUri.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLUri.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLUri.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/util/SBMLUri.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLUri.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLUri.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLUri.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLUri.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘void SBMLUri::parse(const std::string&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLUri.cpp:162:21: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 162 | ptr_fun(tolower)); // scheme is icase | ~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLUri.cpp:203:22: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 203 | ptr_fun(tolower)); // host is icase | ~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/CompIdentifierConsistencyConstraints.cpp:39, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompValidator.h:62, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp:39: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/sbml/Submodel.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.h:150, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/RateRule.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:40: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp: In member function ‘Deletion* Submodel::createDeletion()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Submodel.cpp:502:3: note: in expansion of macro ‘COMP_CREATE_NS’ 502 | COMP_CREATE_NS(compns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/CompUnitConsistencyConstraints.cpp:39, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompValidator.h:62, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompUnitConsistencyValidator.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp:39: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/CompConsistencyConstraints.cpp:39, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompConsistencyValidator.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompValidator.h:62, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompConsistencyValidator.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompConsistencyValidator.cpp:39: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/CompValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompValidator.cpp:41: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/functional:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompValidator.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompValidator.cpp:72:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 72 | struct Apply : public unary_function*, void> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/util/CompFlatteningConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/CompFlatteningConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/CompFlatteningConverter.h:492, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/CompFlatteningConverter.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/CompFlatteningConverter.h:491: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/ClassReplacements.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/ClassReplacements.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/CompIdBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/CompIdBase.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/CompIdBase.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/CompIdBase.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 0%] Swig Python source cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py --language python --top /builddir/build/BUILD/libSBML-5.19.0-Source --master /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/libsbml.i --output /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/pydoc-doxygen.i --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_LAYOUT --define USE_MULTI --define USE_QUAL --define USE_RENDER --define USE_COMP --define USE_FBC --define USE_GROUPS --define USE_L3V2EXTENDEDMATH --define USE_MULTI --define USE_QUAL --define USE_RENDER cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/generate-class-name-list.py /builddir/build/BUILD/libSBML-5.19.0-Source/src > /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/class-list.txt cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/generate-converters-list.py /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/class-list.txt > /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/libsbml-converters.txt cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python && /usr/bin/python3 /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/doc-converter/rewrite_pydoc.py -f /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/pydoc-doxygen.i -o /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/pydoc-normal.i -i /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../../../docs/src/common-text -g /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../../../docs/src/common-graphics Warning: unable to expand @htmlinclude 'pkg-marker-l3v2extendedmath.html' Warning: unable to expand @htmlinclude 'pkg-marker-l3v2extendedmath.html' Warning: unable to expand @htmlinclude 'pkg-marker-l3v2extendedmath.html' Warning: unable to expand @htmlinclude 'pkg-marker-l3v2extendedmath.html' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename pydoc-doxygen.i pydoc.i cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python && /usr/bin/swig -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/ -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/include -DGENERATING_DOCS -c++ -python -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/libsbml_wrap.cpp /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/libsbml.i cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename pydoc.i pydoc-doxygen.i cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename libsbml.py libsbml-doxygen.py cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename pydoc-normal.i pydoc.i cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python && /usr/bin/swig -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/ -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/include -c++ -python -DLIBSBML_COMPILED_IN_SRC -DUSE_LIBXML -DUSE_BZ2 -DUSE_ZLIB -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_COMP -DUSE_FBC -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -o /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/libsbml_wrap.cpp /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/libsbml.i cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python && /usr/bin/cmake -E rename pydoc.i pydoc-normal.i cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python && /usr/bin/cmake -DCUR_BIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python" -DVERSION="5.19.0" -P /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/add_version.cmake cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python && /usr/bin/cmake -DBIN_DIRECTORY="/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python" -DSRC_DIRECTORY="/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python" -DPYTHON_USE_API2_WARNINGS="OFF" -P /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/patch-python.cmake -- Patching Python wrapper make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:447: SyntaxWarning: invalid escape sequence '\s' p = re.compile('(\s+?)\*/', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:502: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('/\*\*(\s+\*)+', r'/** \n *', docstring) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:506: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('\*/', r'* @internal\n */', docstring) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:851: SyntaxWarning: invalid escape sequence '\W' p = re.compile('(\W+)(\w+?)::(\w+\s*\([^)]*?\))') /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:994: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@link\s*\*?\s+(\w+)?#(\w+)\s*\*?\s+(\w+)\s*@endlink') /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1010: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^\s*\*\s+@par(\s)', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1015: SyntaxWarning: invalid escape sequence '\s' p = re.compile('(@if|@ifnot)[\s*]+(\w+)[\s*]+(.+?)((@else)\s+(.+?))?@endif', re.DOTALL) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1024: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s+)\*\s*$', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1026: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^((?!\s+\Z)\s+)$', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1028: SyntaxWarning: invalid escape sequence '\Z' p = re.compile('^(?!\Z)$', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1041: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@section\s+[^\s]+\s+(.*)$', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1043: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@subsection\s+[^\s]+\s+(.*)$', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1045: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@subsubsection\s+[^\s]+\s+(.*)$', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1051: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@image\s+html+\s+([^\s]+).*$', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1053: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@image\s+latex+\s+([^\s]+).*$', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1075: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@c(\n[ \t]*\*[ \t]*)([^ ,;()/*\n\t<]+)', r'\1\2', docstring) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1077: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@p(\n[ \t]*\*[ \t]+)([^ ,.:;()/*\n\t<]+)', r'\1\2', docstring) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1079: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@em(\n[ \t]*\*[ \t]*)([^ ,.:;()/*\n\t<]+)', r'\1\2', docstring) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1085: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s+\*\s+)(@li\s+.*?)(\s+)(\*/|

\s+\*\s+(?!@li\s))', re.MULTILINE|re.DOTALL) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1090: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s+\*\s+)(@deprecated\s)((\S|\s)+?)(

|\*/)', re.MULTILINE|re.DOTALL) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1111: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s+)\*\s+\*\s+@', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1114: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s*)\*\s*

', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1116: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^(\s*)\*?\s*

((\s+\*)+\s+

)+', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1119: SyntaxWarning: invalid escape sequence '\s' p = re.compile('

([\s*]*

)+', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1142: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@ref\s+\*?\s*(\w+)', re.DOTALL) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1227: SyntaxWarning: invalid escape sequence '\s' docstring = re.sub('(@see\s+\w+)::', r'\1#', docstring) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1235: SyntaxWarning: invalid escape sequence '\s' docstring = re.sub('(@see\s+)([\w:.]+)\(', r'\1#\2(', docstring) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1254: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@link([\s/*]+[\w\s,.:#()*]+[\s/*]*[\w():#]+[\s/*]*)@endlink', re.DOTALL) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1284: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@par(\s)', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1430: SyntaxWarning: invalid escape sequence '\s' p = re.compile('(\s+)(\S+?)::(\w+\s*)(\([^)]*?\))', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1432: SyntaxWarning: invalid escape sequence '\s' p = re.compile('(@see\s+)(\w+\s*)(\([^)]*?\))') /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1452: SyntaxWarning: invalid escape sequence '\s' p = re.compile('^\s+(\S*\s*)', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1456: SyntaxWarning: invalid escape sequence '\S' p = re.compile('^[ \t]+(\S)', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1472: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@c(\n[ \t]*\*[ \t]*)([^ ,.:;()/*\n\t<]+)', r'\1C<\2>', docstring) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1474: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@p(\n[ \t]*\*[ \t]+)([^ ,.:;()/*\n\t<]+)', r'\1C<\2>', docstring) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1476: SyntaxWarning: invalid escape sequence '\*' docstring = re.sub('@em(\n[ \t]*\*[ \t]*)([^ ,.:;()/*\n\t<]+)', r'\1I<\2>', docstring) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1743: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@copy(details|doc)\s+(\w+)') /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1755: SyntaxWarning: invalid escape sequence '\s' p = re.compile('@htmlinclude\s+(\*\s+)*([-\w."\']+)', re.DOTALL) #' /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1760: SyntaxWarning: invalid escape sequence '\*' p = re.compile('^([ \t]*\*)[ \t]+\*[ \t]*$', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/swigdoc.py:1762: SyntaxWarning: invalid escape sequence '\*' p = re.compile('^([ \t]*\*[ \t]*)\n[ \t]*\*[ \t]*\n[ \t]*\*[ \t]*@li', re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/swig/libsbmlutils.py:134: SyntaxWarning: invalid escape sequence '\s' match = re.search('(@class|@enum)\s+(\w+)', line) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/swig/libsbmlutils.py:144: SyntaxWarning: invalid escape sequence '\s' match = re.search('%template\s*\(([^)]+)\)', line) /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/libsbmlutils.py:134: SyntaxWarning: invalid escape sequence '\s' match = re.search('(@class|@enum)\s+(\w+)', line) /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/libsbmlutils.py:144: SyntaxWarning: invalid escape sequence '\s' match = re.search('%template\s*\(([^)]+)\)', line) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/doc-converter/rewrite_pydoc.py:271: SyntaxWarning: invalid escape sequence '\(' p = re.compile('(%feature\("docstring"\) \S+ "\n)(.*?)(^";\n\s*)', re.DOTALL|re.MULTILINE) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/doc-converter/rewrite_pydoc.py:314: SyntaxWarning: invalid escape sequence '\s' p = re.compile('(@if|@ifnot)[\s*]+(\w+)[\s*]+(.+?)((@else)\s+(.+?))?@endif', re.DOTALL) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/doc-converter/rewrite_pydoc.py:333: SyntaxWarning: invalid escape sequence '\w' p = re.compile('@code({[.\w]+?})?(.+?)@endcode\n', re.DOTALL) /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/doc-converter/prettytable.py:74: SyntaxWarning: invalid escape sequence '\[' _re = re.compile("\033\[[0-9;]*m") /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/doc-converter/prettytable.py:800: SyntaxWarning: invalid escape sequence '\{' self.vertical_char = random.choice("~!@#$%^&*()_+|-=\{}[];':\",./;<>?") /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/doc-converter/prettytable.py:801: SyntaxWarning: invalid escape sequence '\{' self.horizontal_char = random.choice("~!@#$%^&*()_+|-=\{}[];':\",./;<>?") /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/doc-converter/prettytable.py:802: SyntaxWarning: invalid escape sequence '\{' self.junction_char = random.choice("~!@#$%^&*()_+|-=\{}[];':\",./;<>?") /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/std_set.i:65: Warning 314: 'del' is a python keyword, renaming to '_del' /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/std_set.i:65: Warning 314: 'del' is a python keyword, renaming to '_del' Python: Add Version to generated file make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 4%] Built target binding_python_swig make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLFileResolver.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLFileResolver.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLFileResolver.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLFileResolver.h:66, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLFileResolver.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolver.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolver.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolver.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolver.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLResolver.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLResolver.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLResolver.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLResolver.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:40: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp: In member function ‘void ExtModelReferenceCycles::logCycle(const Model&, std::string, std::string)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:290:3: note: in expansion of macro ‘COMP_CREATE_NS’ 290 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/CompIdBase.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:40: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp: In member function ‘void SubmodelReferenceCycles::logCycle(const Model&, std::string, std::string)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:329:3: note: in expansion of macro ‘COMP_CREATE_NS’ 329 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 4%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLResolverRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLResolverRegistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLResolverRegistry.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLResolverRegistry.cpp:39: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniquePortIds.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniquePortIds.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator 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src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLUri.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLUri.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLUri.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/util/SBMLUri.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLUri.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLUri.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLUri.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLUri.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLUri.cpp: In member function ‘void SBMLUri::parse(const std::string&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLUri.cpp:162:21: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 162 | ptr_fun(tolower)); // scheme is icase | ~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/SBMLUri.cpp:203:22: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 203 | ptr_fun(tolower)); // host is icase | ~~~~~~~~~~~~~~~~^~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegister.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.h:66, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:147, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:146: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:150: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘virtual SBase* FbcModelPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:202:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 202 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘FluxBound* FbcModelPlugin::createFluxBound()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:838:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 838 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘Objective* FbcModelPlugin::createObjective()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1103:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1103 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘GeneProduct* FbcModelPlugin::createGeneProduct()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1283:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1283 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘GeneAssociation* FbcModelPlugin::createGeneAssociation()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1490:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1490 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:68: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function ‘virtual SBase* FbcReactionPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:153:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 153 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function ‘GeneProductAssociation* FbcReactionPlugin::createGeneProductAssociation()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:451:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 451 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:91, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:90: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:97: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/CompConsistencyConstraints.cpp:39, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompConsistencyValidator.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompValidator.h:62, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompConsistencyValidator.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompConsistencyValidator.cpp:39: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 5%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Association.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Association.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Association.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Association.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Association.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.h:78: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘FbcAnd* FbcAnd::createAnd()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:305:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 305 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘FbcOr* FbcAnd::createOr()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:342:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 342 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘GeneProductRef* FbcAnd::createGeneProductRef()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:379:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 379 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/CompIdentifierConsistencyConstraints.cpp:39, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompValidator.h:62, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompIdentifierConsistencyValidator.cpp:39: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.h:78: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘FbcAnd* FbcOr::createAnd()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:317:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 317 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘FbcOr* FbcOr::createOr()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:354:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 354 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘GeneProductRef* FbcOr::createGeneProductRef()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:391:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 391 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.h:109, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.h:105: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.h:110: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘FbcAnd* ListOfFbcAssociations::createAnd()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:948:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 948 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘FbcOr* ListOfFbcAssociations::createOr()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:985:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 985 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘GeneProductRef* ListOfFbcAssociations::createGeneProductRef()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1022:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1022 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘virtual SBase* ListOfFbcAssociations::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1118:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1118 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1126:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1126 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1134:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1134 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/Bmake[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' UILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1142:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1142 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/CompUnitConsistencyConstraints.cpp:39, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompValidator.h:62, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompUnitConsistencyValidator.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompUnitConsistencyValidator.cpp:39: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxBound.h:130, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxBound.h:131: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp: In member function ‘virtual SBase* ListOfFluxBounds::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:1181:7: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1181 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:68: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function ‘Association* GeneAssociation::createAssociation()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:355:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 355 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function ‘virtual SBase* ListOfGeneAssociations::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:704:7: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 704 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/CompValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompValidator.cpp:41: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/functional:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompValidator.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/CompValidator.cpp:72:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 72 | struct Apply : public unary_function*, void> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.h:97, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.h:98: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function ‘FluxObjective* ListOfFluxObjectives::createFluxObjective()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1105:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1105 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function ‘virtual SBase* ListOfFluxObjectives::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1201:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1201 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.h:93, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.h:89: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.h:94: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function ‘GeneProduct* ListOfGeneProducts::createGeneProduct()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1103:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1103 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function ‘virtual SBase* ListOfGeneProducts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1199:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1199 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ClassReplacements.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/ClassReplacements.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/ClassReplacements.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductRef.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:147, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductRef.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:146: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:100, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:96: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:101: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual FbcAnd* GeneProductAssociation::createAnd()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:217:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 217 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual FbcOr* GeneProductAssociation::createOr()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:232:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 232 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual GeneProductRef* GeneProductAssociation::createGeneProductRef()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:247:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 247 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual SBase* GeneProductAssociation::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:932:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 932 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/CompIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/CompIdBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/CompIdBase.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/CompIdBase.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/CompIdBase.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/sbml/Objective.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.h:138, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.h:139: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘FluxObjective* Objective::createFluxObjective()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:477:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 477 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘Objective* ListOfObjectives::createObjective()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:1379:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1379 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘virtual SBase* ListOfObjectives::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:1498:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1498 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcToCobraConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcToCobraConverter.h:61, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcToCobraConverter.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcToCobraConverter.h:60: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common/FbcExtensionTypes.h:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcToCobraConverter.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 6%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/CobraToFbcConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/CobraToFbcConverter.h:61, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/CobraToFbcConverter.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/CobraToFbcConverter.h:60: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common/FbcExtensionTypes.h:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/CobraToFbcConverter.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcV1ToV2Converter.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp:36: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcV1ToV2Converter.h:59: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common/FbcExtensionTypes.h:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 7%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:40: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp: In member function ‘void ExtModelReferenceCycles::logCycle(const Model&, std::string, std::string)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/ExtModelReferenceCycles.cpp:290:3: note: in expansion of macro ‘COMP_CREATE_NS’ 290 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcV2ToV1Converter.h:58, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp:36: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcV2ToV1Converter.h:57: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common/FbcExtensionTypes.h:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/FbcIdentifierConsistencyConstraints.cpp:39, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcValidator.h:62, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.h:44, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp:39: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/PackageIdReplacementCheck.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcValidator.cpp:41: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/functional:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcValidator.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common/FbcExtensionTypes.h:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcValidator.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcValidator.cpp:72:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 72 | struct Apply : public unary_function*, void> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:39, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcValidator.h:62, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcConsistencyValidator.h:44, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp:39: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegister.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompModelPlugin.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:40: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp: In member function ‘void SubmodelReferenceCycles::logCycle(const Model&, std::string, std::string)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(CompPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.cpp:329:3: note: in expansion of macro ‘COMP_CREATE_NS’ 329 | COMP_CREATE_NS(compns, m.getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:68: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp: In member function ‘Group* GroupsModelPlugin::createGroup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:238:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 238 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.h:62, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/CompIdBase.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniqueCompIdBase.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Group.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Group.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Group.h:169, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Group.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Group.h:165: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Group.cpp: In member function ‘Member* Group::createMember()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Group.cpp:454:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 454 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 8%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.h:76, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.h:77: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function ‘Group* ListOfGroups::createGroup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:252:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 252 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function ‘virtual SBase* ListOfGroups::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:312:3: note: in expansion of macro ‘GROUPS_CREATE_NS’ 312 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniqueComponentIds.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.h:104, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.h:101: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.h:105: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function ‘Member* ListOfMembers::createMember()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:352:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 352 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: At global scope: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:372:29: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 372 | struct IdEqIR : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function ‘virtual SBase* ListOfMembers::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:463:3: note: in expansion of macro ‘GROUPS_CREATE_NS’ 463 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniqueModelIds.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints/GroupsConsistencyConstraints.cpp:47, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/GroupsValidator.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/GroupsConsistencyValidator.h:56, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp:48: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints/GroupsIdentifierConsistencyConstraints.cpp:47, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/GroupsValidator.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.h:56, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp:48: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Member.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Member.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Member.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/sbml/Member.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Member.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Member.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Member.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Member.h:74: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortIds.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniquePortIds.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniquePortIds.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/GroupsValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/GroupsValidator.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:56: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/GroupsValidator.cpp:72:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 72 | struct Apply : public unary_function*, void> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.h:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.h:51: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniquePortReferences.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.h:50, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:61: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UniqueReplacedReferences.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegister.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp:47, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.h:56, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp:48: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp:47, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.h:56, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp:48: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:56: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp:72:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 72 | struct Apply : public unary_function*, void> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 9%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util 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-MF CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints/UnitReplacementCheck.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:56: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:56: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegister.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegister.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:58, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:57: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:62: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp: In member function ‘Layout* LayoutModelPlugin::createLayout()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:485:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 485 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.h:269, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:53: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:59: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:147, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:146: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:150: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘virtual SBase* FbcModelPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:202:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 202 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘FluxBound* FbcModelPlugin::createFluxBound()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:838:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 838 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘Objective* FbcModelPlugin::createObjective()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1103:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1103 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘GeneProduct* FbcModelPlugin::createGeneProduct()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1283:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1283 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp: In member function ‘GeneAssociation* FbcModelPlugin::createGeneAssociation()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.cpp:1490:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1490 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:53: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 10%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp:41: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:53: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 11%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:62: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Curve.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:63: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘LineSegment* Curve::createLineSegment()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:366:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 366 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘CubicBezier* Curve::createCubicBezier()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:381:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 381 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘virtual SBase* ListOfLineSegments::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:649:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 649 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcReactionPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:68: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function ‘virtual SBase* FbcReactionPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:153:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 153 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp: In member function ‘GeneProductAssociation* FbcReactionPlugin::createGeneProductAssociation()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcReactionPlugin.cpp:451:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 451 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Dimensions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Dimensions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Dimensions.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Dimensions.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Dimensions.cpp:41: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Dimensions.cpp:39: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.h:66, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcSBMLDocumentPlugin.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:41: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:61: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:65: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:64: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function ‘ReferenceGlyph* GeneralGlyph::createReferenceGlyph()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:656:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 656 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function ‘virtual SBase* ListOfReferenceGlyphs::createObject(XMLInputStream&)â€make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' ™: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:1183:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1183 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:91, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:90: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcSpeciesPlugin.h:97: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:62: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:63: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual SBase* ListOfGraphicalObjects::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:1207:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1207 | LAYOUT_CREATE_NS(layoutns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/LineSegment.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/LineSegment.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/LineSegment.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/LineSegment.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:60: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Layout.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:66, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Dimensions.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:67: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘CompartmentGlyph* Layout::createCompartmentGlyph()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1387:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1387 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/laymake[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' out/sbml/Layout.cpp: In member function ‘SpeciesGlyph* Layout::createSpeciesGlyph()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1403:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1403 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘ReactionGlyph* Layout::createReactionGlyph()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1419:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1419 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘GeneralGlyph* Layout::createGeneralGlyph()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1434:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1434 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘TextGlyph* Layout::createTextGlyph()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1450:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1450 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘GraphicalObject* Layout::createAdditionalGraphicalObject()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1467:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1467 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfLayouts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2048:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2048 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfCompartmentGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2220:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2220 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfSpeciesGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2372:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2372 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfReactionGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2521:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2521 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfTextGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2670:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2670 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Point.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Point.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Point.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/Point.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.cpp:41: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.cpp:39: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Association.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Association.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Association.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Association.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Association.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:41: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:67: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function ‘SpeciesReferenceGlyph* ReactionGlyph::createSpeciesReferenceGlyph()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:503:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 503 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function ‘virtual SBase* ListOfSpeciesReferenceGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:980:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 980 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:61: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.cpp:40: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:58, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:57: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.cpp:40: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAnd.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.h:78: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘FbcAnd* FbcAnd::createAnd()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:305:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 305 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘FbcOr* FbcAnd::createOr()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:342:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 342 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp: In member function ‘GeneProductRef* FbcAnd::createGeneProductRef()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAnd.cpp:379:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 379 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:61: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp:40: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.cpp:54: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 12%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:59, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:58: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/constraints/LayoutIdentifierConsistencyConstraints.cpp:46, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutValidator.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.h:51, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp:47: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.h:109, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.h:105: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.h:110: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘FbcAnd* ListOfFbcAssociations::createAnd()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:948:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 948 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘FbcOr* ListOfFbcAssociations::createOr()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:985:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 985 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘GeneProductRef* ListOfFbcAssociations::createGeneProductRef()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1022:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1022 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp: In member function ‘virtual SBase* ListOfFbcAssociations::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1118:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1118 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1126:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1126 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1134:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1134 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcAssociation.cpp:1142:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1142 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/constraints/UniqueIdsLayout.h:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/constraints/UniqueIdsLayout.h:51: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutValidator.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:56: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutValidator.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:62: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:63: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutValidator.cpp:75:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 75 | struct Apply : public unary_function*, void> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FbcOr.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.h:78: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘FbcAnd* FbcOr::createAnd()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:317:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 317 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘FbcOr* FbcOr::createOr()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:354:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 354 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp: In member function ‘GeneProductRef* FbcOr::createGeneProductRef()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FbcOr.cpp:391:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 391 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:46, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutValidator.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutConsistencyValidator.h:51, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp:47: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:62: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:63: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlmake[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' yph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiASTPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiASTPlugin.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiASTPlugin.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiASTPlugin.h:67: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxBound.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxBound.h:130, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxBound.h:131: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp: In member function ‘virtual SBase* ListOfFluxBounds::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxBound.cpp:1181:7: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1181 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/FluxObjective.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.h:97, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.h:98: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function ‘FluxObjective* ListOfFluxObjectives::createFluxObjective()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1105:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1105 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp: In member function ‘virtual SBase* ListOfFluxObjectives::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/FluxObjective.cpp:1201:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1201 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegister.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:66: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function ‘virtual SBase* MultiCompartmentPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:140:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 140 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function ‘CompartmentReference* MultiCompartmentPlugin::createCompartmentReference()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:587:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 587 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.h:51, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:68: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp: In member function ‘virtual SBase* MultiListOfReactionsPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:136:8: note: in expansion of macro ‘MULTI_CREATE_NS’ 136 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:68: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function ‘Association* GeneAssociation::createAssociation()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:355:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 355 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp: In member function ‘virtual SBase* ListOfGeneAssociations::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.cpp:704:7: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 704 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:68: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘virtual SBase* MultiModelPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:132:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 132 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘MultiSpeciesType* MultiModelPlugin::createMultiSpeciesType()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:325:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 325 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘BindingSiteSpeciesType* MultiModelPlugin::createBindingSiteSpeciesType()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:352:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 352 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘IntraSpeciesReaction* MultiModelPlugin::createIntraSpeciesReaction()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:408:4: note: in expansion of macro ‘MULTI_CREATE_NS’ 408 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProduct.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.h:93, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.h:89: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.h:94: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function ‘GeneProduct* ListOfGeneProducts::createGeneProduct()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1103:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1103 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp: In member function ‘virtual SBase* ListOfGeneProducts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProduct.cpp:1199:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1199 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.h:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp:33: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:68: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp: In member function ‘virtual SBase* MultiSimpleSpeciesReferencePlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:129:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 129 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 13%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:100, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:96: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:101: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual FbcAnd* GeneProductAssociation::createAnd()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:217:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 217 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual FbcOr* GeneProductAssociation::createOr()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:232:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 232 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual GeneProductRef* GeneProductAssociation::createGeneProductRef()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:247:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 247 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp: In member function ‘virtual SBase* GeneProductAssociation::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductAssociation.cpp:932:3: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 932 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/GeneProductRef.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductRef.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:147, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneProductRef.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:146: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.h:58, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.h:56: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘virtual SBase* MultiSpeciesPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:137:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 137 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘OutwardBindingSite* MultiSpeciesPlugin::createOutwardBindingSite()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:484:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 484 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘SpeciesFeature* MultiSpeciesPlugin::createSpeciesFeature()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:637:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 637 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘SubListOfSpeciesFeatures* MultiSpeciesPlugin::createSubListOfSpeciesFeatures()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:739:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 739 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 14%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.h:56, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:68: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function ‘virtual SBase* MultiSpeciesReferencePlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:128:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 128 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function ‘SpeciesTypeComponentMapInProduct* MultiSpeciesReferencePlugin::createSpeciesTypeComponentMapInProduct()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:299:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 299 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/sbml/Objective.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.h:138, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.h:139: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘FluxObjective* Objective::createFluxObjective()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:477:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 477 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘Objective* ListOfObjectives::createObjective()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:1379:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1379 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp: In member function ‘virtual SBase* ListOfObjectives::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:81:5: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 81 | EXTENSION_CREATE_NS_WITH_VERSION(FbcPkgNamespaces, variable, sbmlns, version); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/Objective.cpp:1498:5: note: in expansion of macro ‘FBC_CREATE_NS_WITH_VERSION’ 1498 | FBC_CREATE_NS_WITH_VERSION(fbcns, getSBMLNamespaces(), getPackageVersion()); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.h:70: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcToCobraConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcToCobraConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcToCobraConverter.h:61, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcToCobraConverter.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcToCobraConverter.h:60: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common/FbcExtensionTypes.h:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcToCobraConverter.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/CobraToFbcConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/CobraToFbcConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/CobraToFbcConverter.h:61, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/CobraToFbcConverter.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/CobraToFbcConverter.h:60: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common/FbcExtensionTypes.h:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/CobraToFbcConverter.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcV1ToV2Converter.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp:36: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcV1ToV2Converter.h:59: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common/FbcExtensionTypes.h:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcV1ToV2Converter.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcV2ToV1Converter.h:58, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp:36: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcV2ToV1Converter.h:57: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common/FbcExtensionTypes.h:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util/FbcV2ToV1Converter.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.h:65: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In member function ‘virtual SBase* ListOfCompartmentReferences::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:746:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 746 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/FbcIdentifierConsistencyConstraints.cpp:39, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcValidator.h:62, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.h:44, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcIdentifierConsistencyValidator.cpp:39: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:39, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcValidator.h:62, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcConsistencyValidator.h:44, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcConsistencyValidator.cpp:39: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/FbcConsistencyConstraints.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/FluxBoundsConsistent.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/FbcValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcValidator.cpp:41: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/functional:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcValidator.cpp:36: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common/FbcExtensionTypes.h:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcValidator.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/FbcValidator.cpp:72:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 72 | struct Apply : public unary_function*, void> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.h:71: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.h:76: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In member function ‘virtual SBase* ListOfInSpeciesTypeBonds::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:846:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 846 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueGeneProductLabels.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegister.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints/UniqueModelWideIds.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/IntraSpeciesReaction.h:80, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/IntraSpeciesReaction.h:76: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:68: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp: In member function ‘Group* GroupsModelPlugin::createGroup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsModelPlugin.cpp:238:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 238 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.h:62, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsSBMLDocumentPlugin.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfGroups.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.h:76, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.h:77: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function ‘Group* ListOfGroups::createGroup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:252:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 252 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp: In member function ‘virtual SBase* ListOfGroups::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfGroups.cpp:312:3: note: in expansion of macro ‘GROUPS_CREATE_NS’ 312 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.h:137: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.h:142: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In member function ‘virtual SBase* ListOfOutwardBindingSites::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:846:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 846 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Group.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Group.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Group.h:169, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Group.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Group.h:165: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Group.cpp: In member function ‘Member* Group::createMember()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Group.cpp:454:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 454 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.h:81, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.h:77: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.h:82: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘SpeciesFeatureType* MultiSpeciesType::createSpeciesFeatureType()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:454:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 454 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘SpeciesTypeInstance* MultiSpeciesType::createSpeciesTypeInstance()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:611:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 611 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘SpeciesTypeComponentIndex* MultiSpeciesType::createSpeciesTypeComponentIndex()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:768:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 768 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘InSpeciesTypeBond* MultiSpeciesType::createInSpeciesTypeBond()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:925:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 925 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘virtual SBase* MultiSpeciesType::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1182:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 1182 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘virtual SBase* ListOfMultiSpeciesTypes::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1630:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1630 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1637:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1637 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/ListOfMembers.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.h:104, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.h:101: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.h:105: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function ‘Member* ListOfMembers::createMember()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:352:5: note: in expansion of macro ‘GROUPS_CREATE_NS’ 352 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: At global scope: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:372:29: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 372 | struct IdEqIR : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp: In member function ‘virtual SBase* ListOfMembers::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:75:1: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(GroupsPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/ListOfMembers.cpp:463:3: note: in expansion of macro ‘GROUPS_CREATE_NS’ 463 | GROUPS_CREATE_NS(groupsns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:64: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In member function ‘virtual SBase* ListOfPossibleSpeciesFeatureValues::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:744:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 744 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/sbml/Member.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Member.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Member.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Member.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml/Member.h:74: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.h:83, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.h:79: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.h:84: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function ‘SpeciesFeatureValue* SpeciesFeature::createSpeciesFeatureValue()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:549:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 549 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function ‘virtual SBase* SpeciesFeature::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:762:3: note: in expansion of macro ‘MULTI_CREATE_NS’ 762 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function ‘virtual SBase* ListOfSpeciesFeatures::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1385:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1385 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1392:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1392 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints/GroupsConsistencyConstraints.cpp:47, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/GroupsValidator.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/GroupsConsistencyValidator.h:56, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/GroupsConsistencyValidator.cpp:48: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints/GroupsIdentifierConsistencyConstraints.cpp:47, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/GroupsValidator.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.h:56, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.cpp:48: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/GroupsValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/GroupsValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/GroupsValidator.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:56: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/GroupsValidator.cpp:72:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 72 | struct Apply : public unary_function*, void> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 16%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:76, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:72: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:77: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function ‘PossibleSpeciesFeatureValue* SpeciesFeatureType::createPossibleSpeciesFeatureValue()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:432:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 432 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function ‘virtual SBase* SpeciesFeatureType::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:623:3: note: in expansion of macro ‘MULTI_CREATE_NS’ 623 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function ‘virtual SBase* ListOfSpeciesFeatureTypes::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1004:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1004 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.h:64: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp: In member function ‘virtual SBase* ListOfSpeciesFeatureValues::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:591:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 591 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints/GroupCircularReferences.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.h:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.h:51: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:70: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:75: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In member function ‘virtual SBase* ListOfSpeciesTypeComponentIndexes::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:865:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 865 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.h:50, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathASTPlugin.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:61: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 17%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:70: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:75: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In member function ‘virtual SBase* ListOfSpeciesTypeComponentMapInProducts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:934:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 934 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegister.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp:47, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.h:56, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp:48: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp:47, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.h:56, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp:48: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h:74: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h:79: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In member function ‘virtual SBase* ListOfSpeciesTypeInstances::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:859:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 859 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:116, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:113: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:118: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function ‘SpeciesFeature* SubListOfSpeciesFeatures::createSpeciesFeature()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:275:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 275 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function ‘virtual SBase* SubListOfSpeciesFeatures::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:487:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 487 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMArgumentsUnitsCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:56: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathValidator.cpp:72:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 72 | struct Apply : public unary_function*, void> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp:38, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiValidator.h:62, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.h:43, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathMathMLConsistencyConstraints.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:56: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator 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src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp:38, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiValidator.h:62, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.h:43, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2EMNumberArgsMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp:38, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiConsistencyValidator.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiValidator.h:62, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiConsistencyValidator.h:43, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiConsistencyValidator.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints/L3v2extendedmathUnitConsistencyConstraints.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:56: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:56: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegister.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/MultiValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiValidator.cpp:34: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:56: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiValidator.cpp:72:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 72 | struct Apply : public unary_function*, void> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:58, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:57: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:62: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp: In member function ‘Layout* LayoutModelPlugin::createLayout()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.cpp:485:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 485 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiIdBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiIdBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdBase.h:46, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdBase.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdBase.h:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 18%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:56: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.h:269, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:53: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h:59: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.h:56, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.h:52: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.h:56, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.h:52: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 19%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/BoundingBox.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:53: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:56: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CompartmentGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp:41: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:53: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension 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-mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/CubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:62: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Curve.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:63: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘LineSegment* Curve::createLineSegment()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:366:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 366 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘CubicBezier* Curve::createCubicBezier()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:381:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 381 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp: In member function ‘virtual SBase* ListOfLineSegments::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.cpp:649:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 649 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdBase.h:46, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.h:50, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp:40: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp:38: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Dimensions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Dimensions.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Dimensions.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Dimensions.cpp:41: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Dimensions.cpp:39: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GeneralGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:41: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:61: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:65: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:64: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function ‘ReferenceGlyph* GeneralGlyph::createReferenceGlyph()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:656:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 656 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp: In member function ‘virtual SBase* ListOfReferenceGlyphs::createObject(XMLInputStream&)â€make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' ™: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.cpp:1183:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1183 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualExtension.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualExtension.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegister.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/GraphicalObject.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:62: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /builddir/buildmake[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:63: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp: In member function ‘virtual SBase* ListOfGraphicalObjects::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.cpp:1207:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1207 | LAYOUT_CREATE_NS(layoutns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:68: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function ‘QualitativeSpecies* QualModelPlugin::createQualitativeSpecies()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:839:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 839 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function ‘Transition* QualModelPlugin::createTransition()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:1021:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1021 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualSBMLDocumentPlugin.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/LineSegment.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:60: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/DefaultTerm.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/DefaultTerm.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/DefaultTerm.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/DefaultTerm.h:63: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 20%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Layout.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:66, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Dimensions.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:67: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘CompartmentGlyph* Layout::createCompartmentGlyph()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1387:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1387 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘SpeciesGlyph* Layout::createSpeciesGlyph()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1403:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1403 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘ReactionGlyph* Layout::createReactionGlyph()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1419:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1419 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘GeneralGlyph* Layout::createGeneralGlyph()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1434:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1434 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘TextGlyph* Layout::createTextGlyph()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1450:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1450 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘GraphicalObject* Layout::createAdditionalGraphicalObject()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:1467:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1467 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfLayouts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2048:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2048 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfCompartmentGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2220:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2220 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfSpeciesGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2372:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2372 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfReactionGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2521:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2521 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp: In member function ‘virtual SBase* ListOfTextGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.cpp:2670:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 2670 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.h:76, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.h:72: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.h:77: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘DefaultTerm* ListOfFunctionTerms::createDefaultTerm()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1072:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1072 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘virtual SBase* ListOfFunctionTerms::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1129:3: note: in expansion of macro ‘QUAL_CREATE_NS’ 1129 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/Point.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.cpp:41: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.cpp:39: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReactionGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:41: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:67: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function ‘SpeciesReferenceGlyph* ReactionGlyph::createSpeciesReferenceGlyph()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:503:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 503 | LAYOUT_CREATE_NS(layoutns,getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp: In member function ‘virtual SBase* ListOfSpeciesReferenceGlyphs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.cpp:980:5: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 980 | LAYOUT_CREATE_NS(layoutns,this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Input.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Input.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Input.h:106, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Input.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Input.h:102: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1254:29: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 1254 | struct IdEqQS : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Input.h:107: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual SBase* ListOfInputs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1342:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1342 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/ReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:61: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.cpp:40: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:58, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:57: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.cpp:40: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 21%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Output.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Output.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Output.h:97, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Output.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Output.h:93: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1157:29: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 1157 | struct IdEqQS : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Output.h:98: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual SBase* ListOfOutputs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1245:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1245 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.h:88, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.h:84: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.h:89: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual SBase* ListOfQualitativeSpecies::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1338:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1338 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/TextGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:59, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:58: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:61: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.cpp:40: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/sbml/Transition.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.h:90, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.h:86: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.h:91: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Input* Transition::createInput()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:460:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 460 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Output* Transition::createOutput()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:644:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 644 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘FunctionTerm* Transition::createFunctionTerm()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:802:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 802 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘virtual SBase* ListOfTransitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1771:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1771 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/QualConsistencyConstraints.cpp:46, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualConsistencyValidator.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualValidator.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualConsistencyValidator.h:51, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualConsistencyValidator.cpp:46: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutAnnotation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.cpp:54: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/util/LayoutUtilities.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/QualIdentifierConsistencyConstraints.cpp:46, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualValidator.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.h:51, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp:46: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/QualMathConsistencyConstraints.cpp:46, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualValidator.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualMathConsistencyValidator.h:51, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp:46: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/constraints/LayoutIdentifierConsistencyConstraints.cpp:46, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutValidator.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.h:51, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.cpp:47: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/QualValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualValidator.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:56: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualValidator.cpp:72:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 72 | struct Apply : public unary_function*, void> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutValidator.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:56: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutValidator.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:62: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:63: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutValidator.cpp:75:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 75 | struct Apply : public unary_function*, void> | make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.h:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.h:51: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.h:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.h:51: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 22%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:46, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutValidator.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutConsistencyValidator.h:51, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/LayoutConsistencyValidator.cpp:47: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/constraints/LayoutConsistencyConstraints.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:62: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:63: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/constraints/UniqueIdsLayout.h:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/constraints/UniqueIdsLayout.h:51: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/constraints/UniqueIdsLayout.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiASTPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiASTPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiASTPlugin.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiASTPlugin.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiASTPlugin.h:67: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderGraphicalObjectPlugin.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderExtension.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderExtension.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegister.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.cpp:36: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 23%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.h:66: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function ‘virtual SBase* MultiCompartmentPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:140:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 140 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp: In member function ‘CompartmentReference* MultiCompartmentPlugin::createCompartmentReference()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiCompartmentPlugin.cpp:587:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 587 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegister.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.h:51, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:68: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp: In member function ‘virtual SBase* MultiListOfReactionsPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiListOfReactionsPlugin.cpp:136:8: note: in expansion of macro ‘MULTI_CREATE_NS’ 136 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common/RenderExtensionTypes.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp: In member function ‘LocalRenderInformation* RenderLayoutPlugin::createLocalRenderInformation()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:450:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 450 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.h:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.cpp:33: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:68: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘virtual SBase* MultiModelPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:132:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 132 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘MultiSpeciesType* MultiModelPlugin::createMultiSpeciesType()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:325:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 325 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘BindingSiteSpeciesType* MultiModelPlugin::createBindingSiteSpeciesType()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:352:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 352 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp: In member function ‘IntraSpeciesReaction* MultiModelPlugin::createIntraSpeciesReaction()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiModelPlugin.cpp:408:4: note: in expansion of macro ‘MULTI_CREATE_NS’ 408 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:68: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp: In member function ‘virtual SBase* MultiSimpleSpeciesReferencePlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.cpp:129:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 129 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:62: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:63: /make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp: In member function ‘GlobalRenderInformation* RenderListOfLayoutsPlugin::createGlobalRenderInformation()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:713:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 713 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.h:56, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:68: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function ‘virtual SBase* MultiSpeciesReferencePlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:128:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 128 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp: In member function ‘SpeciesTypeComponentMapInProduct* MultiSpeciesReferencePlugin::createSpeciesTypeComponentMapInProduct()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesReferencePlugin.cpp:299:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 299 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.h:58, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.h:56: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘virtual SBase* MultiSpeciesPlugin::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:137:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 137 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘OutwardBindingSite* MultiSpeciesPlugin::createOutwardBindingSite()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:484:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 484 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘SpeciesFeature* MultiSpeciesPlugin::createSpeciesFeature()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:637:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 637 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp: In member function ‘SubListOfSpeciesFeatures* MultiSpeciesPlugin::createSubListOfSpeciesFeatures()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSpeciesPlugin.cpp:739:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 739 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/BindingSiteSpeciesType.h:70: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/IntraSpeciesReaction.h:80, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/IntraSpeciesReaction.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/IntraSpeciesReaction.h:76: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/CompartmentReference.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.h:65: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp: In member function ‘virtual SBase* ListOfCompartmentReferences::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/CompartmentReference.cpp:746:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 746 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.h:71: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.h:76: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp: In member function ‘virtual SBase* ListOfInSpeciesTypeBonds::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/InSpeciesTypeBond.cpp:846:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 846 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/OutwardBindingSite.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.h:137: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.h:142: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp: In member function ‘virtual SBase* ListOfOutwardBindingSites::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/OutwardBindingSite.cpp:846:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 846 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 24%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/MultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.h:81, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.h:77: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.h:82: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘SpeciesFeatureType* MultiSpeciesType::createSpeciesFeatureType()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:454:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 454 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘SpeciesTypeInstance* MultiSpeciesType::createSpeciesTypeInstance()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:611:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 611 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘SpeciesTypeComponentIndex* MultiSpeciesType::createSpeciesTypeComponentIndex()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:768:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 768 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘InSpeciesTypeBond* MultiSpeciesType::createInSpeciesTypeBond()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:925:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 925 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘virtual SBase* MultiSpeciesType::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1182:7: note: in expansion of macro ‘MULTI_CREATE_NS’ 1182 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp: In member function ‘virtual SBase* ListOfMultiSpeciesTypes::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbmake[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' ml/packages/multi/sbml/MultiSpeciesType.cpp:1630:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1630 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/MultiSpeciesType.cpp:1637:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1637 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:64: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp: In member function ‘virtual SBase* ListOfPossibleSpeciesFeatureValues::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.cpp:744:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 744 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.h:64: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp: In member function ‘virtual SBase* ListOfSpeciesFeatureValues::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureValue.cpp:591:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 591 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/DefaultValues.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/DefaultValues.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/DefaultValues.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/DefaultValues.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.h:102, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.h:93: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeatureType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:76, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:72: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.h:77: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function ‘PossibleSpeciesFeatureValue* SpeciesFeatureType::createPossibleSpeciesFeatureValue()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:432:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 432 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function ‘virtual SBase* SpeciesFeatureType::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:623:3: note: in expansion of macro ‘MULTI_CREATE_NS’ 623 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp: In member function ‘virtual SBase* ListOfSpeciesFeatureTypes::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeatureType.cpp:1004:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1004 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesFeature.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.h:83, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.h:79: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.h:84: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function ‘SpeciesFeatureValue* SpeciesFeature::createSpeciesFeatureValue()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:549:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 549 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function ‘virtual SBase* SpeciesFeature::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:762:3: note: in expansion of macro ‘MULTI_CREATE_NS’ 762 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp: In member function ‘virtual SBase* ListOfSpeciesFeatures::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1385:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1385 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesFeature.cpp:1392:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 1392 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:70: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h:75: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp: In member function ‘virtual SBase* ListOfSpeciesTypeComponentIndexes::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.cpp:865:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 865 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Ellipse.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Ellipse.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Ellipse.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Ellipse.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Ellipse.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Ellipse.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Ellipse.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Ellipse.h:68: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Ellipse.cpp:65: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h:74: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h:79: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp: In member function ‘virtual SBase* ListOfSpeciesTypeInstances::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeInstance.cpp:859:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 859 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:70: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h:75: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp: In member function ‘virtual SBase* ListOfSpeciesTypeComponentMapInProducts::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.cpp:934:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 934 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp:38, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiValidator.h:62, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.h:43, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 25%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:116, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:35: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:113: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:118: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function ‘SpeciesFeature* SubListOfSpeciesFeatures::createSpeciesFeature()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:275:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 275 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp: In member function ‘virtual SBase* SubListOfSpeciesFeatures::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:77:5: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 77 | EXTENSION_CREATE_NS(MultiPkgNamespaces, variable, sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp:487:5: note: in expansion of macro ‘MULTI_CREATE_NS’ 487 | MULTI_CREATE_NS(multins, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.h:64: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function ‘GlobalStyle* GlobalRenderInformation::createGlobalStyle()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:369:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 369 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp:38, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiValidator.h:62, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.h:43, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp:38, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiConsistencyValidator.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiValidator.h:62, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiConsistencyValidator.h:43, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiConsistencyValidator.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalStyle.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalStyle.h:66: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiConsistencyConstraints.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:56: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 26%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/MultiValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiValidator.cpp:34: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:56: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/MultiValidator.cpp:72:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 72 | struct Apply : public unary_function*, void> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiIdBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiIdBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdBase.h:46, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdBase.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdBase.h:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdentifierConsistencyConstraints.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:56: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.h:56, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.h:52: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.h:56, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.h:52: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.h:102, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.h:93: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In member function ‘GradientStop* GradientBase::createGradientStop()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:569:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 569 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiMathMLConsistencyConstraints.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:56: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueCRefIdsWithinCompartment.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueISTBIdsWithinMultiSpeciesType.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientStop.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientStop.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientStop.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GradientStop.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientStop.h:84, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientStop.h:80: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp:56: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSFTIdsWithinMultiSpeciesType.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/MultiIdBase.h:46, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.h:50, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp:40: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.cpp:38: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSLOSFIdsWithinSpecies.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSTCIdsWithinMultiSpeciesType.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSTIIdsWithinMultiSpeciesType.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 27%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualSBMLDocumentPlugin.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualSBMLDocumentPlugin.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegister.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/extension/QualModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:68: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:73: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function ‘QualitativeSpecies* QualModelPlugin::createQualitativeSpecies()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:839:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 839 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp: In member function ‘Transition* QualModelPlugin::createTransition()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualModelPlugin.cpp:1021:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1021 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:63: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/DefaultTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/DefaultTerm.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/DefaultTerm.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/DefaultTerm.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/DefaultTerm.h:63: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/FunctionTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.h:76, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.h:72: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.h:77: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘DefaultTerm* ListOfFunctionTerms::createDefaultTerm()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1072:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1072 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp: In member function ‘virtual SBase* ListOfFunctionTerms::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/FunctionTerm.cpp:1129:3: note: in expansion of macro ‘QUAL_CREATE_NS’ 1129 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Input.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Input.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Input.h:106, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Input.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Input.h:102: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1254:29: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 1254 | struct IdEqQS : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Input.h:107: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Input.cpp: In member function ‘virtual SBase* ListOfInputs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Input.cpp:1342:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1342 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Image.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Image.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Image.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Image.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Image.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Transformation.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Transformation2D.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Image.h:76, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Image.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Image.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Image.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Output.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Output.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Output.h:97, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Output.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Output.h:93: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1157:29: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 1157 | struct IdEqQS : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Output.h:98: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Output.cpp: In member function ‘virtual SBase* ListOfOutputs::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Output.cpp:1245:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1245 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/QualitativeSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.h:88, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.h:84: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.h:89: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp: In member function ‘virtual SBase* ListOfQualitativeSpecies::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/QualitativeSpecies.cpp:1338:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1338 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/sbml/Transition.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.h:90, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.h:86: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.h:91: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Input* Transition::createInput()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:460:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 460 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘Output* Transition::createOutput()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:644:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 644 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘FunctionTerm* Transition::createFunctionTerm()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:802:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 802 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp: In member function ‘virtual SBase* ListOfTransitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:74:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 74 | EXTENSION_CREATE_NS(QualPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Transition.cpp:1771:5: note: in expansion of macro ‘QUAL_CREATE_NS’ 1771 | QUAL_CREATE_NS(qualns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/QualConsistencyConstraints.cpp:46, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualConsistencyValidator.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualValidator.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualConsistencyValidator.h:51, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualConsistencyValidator.cpp:46: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/QualIdentifierConsistencyConstraints.cpp:46, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualValidator.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.h:51, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.cpp:46: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 28%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LineEnding.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LineEnding.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LineEnding.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LineEnding.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.h:74: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘RenderGroup* LineEnding::createGroup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:535:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 535 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘BoundingBox* LineEnding::createBoundingBox()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:561:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 561 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘virtual SBase* LineEnding::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1315:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 1315 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1317:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1317 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘LineEnding::readAttributes(XMLAttributes const&, ExpectedAttributes const&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1489:47: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 1489 | if (log && log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1393:16: note: ‘numErrs’ was declared here 1393 | unsigned int numErrs; | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/QualMathConsistencyConstraints.cpp:46, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualValidator.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualMathConsistencyValidator.h:51, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualMathConsistencyValidator.cpp:46: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/QSAssignedOnce.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/QualValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualValidator.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:56: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/QualValidator.cpp:72:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 72 | struct Apply : public unary_function*, void> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.h:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.h:51: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LinearGradient.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.h:102, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LinearGradient.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LinearGradient.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LinearGradient.h:70: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LinearGradient.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/ResultBecomesNegative.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util 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src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.h:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.h:51: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderGraphicalObjectPlugin.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderGraphicalObjectPlugin.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.h:62: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.h:66: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function ‘ColorDefinition* ListOfColorDefinitions::createColorDefinition()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:299:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 299 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function ‘virtual SBase* ListOfColorDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:371:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 371 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderLayoutPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common/RenderExtensionTypes.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp: In member function ‘LocalRenderInformation* RenderLayoutPlugin::createLocalRenderInformation()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderLayoutPlugin.cpp:450:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 450 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegister.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.cpp:36: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:62: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:63: /make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp: In member function ‘GlobalRenderInformation* RenderListOfLayoutsPlugin::createGlobalRenderInformation()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderListOfLayoutsPlugin.cpp:713:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 713 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderSBMLDocumentPlugin.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 29%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:68: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:75: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:73: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function ‘RenderCubicBezier* ListOfCurveElements::createCubicBezier()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:328:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 328 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function ‘virtual SBase* ListOfCurveElements::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:417:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 417 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ColorDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ColorDefinition.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.h:71: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.h:75: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Image* ListOfDrawables::createImage()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:265:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 265 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Ellipse* ListOfDrawables::createEllipse()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:293:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 293 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Rectangle* ListOfDrawables::createRectangle()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:321:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 321 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Polygon* ListOfDrawables::createPolygon()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:349:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 349 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘RenderGroup* ListOfDrawables::createGroup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:377:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 377 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘LineEnding* ListOfDrawables::createLineEnding()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:405:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 405 | RENDER_CREATE_NS(renderns, getSBMLmake[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' Namespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Text* ListOfDrawables::createText()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:433:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 433 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘RenderCurve* ListOfDrawables::createCurve()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:461:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 461 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘virtual SBase* ListOfDrawables::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:521:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 521 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.h:66: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘DefaultValues* ListOfGlobalRenderInformation::createDefaultValues()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:429:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 429 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: At global scope: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:476:50: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 476 | struct IdEqGlobalRenderInformation : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘GlobalRenderInformation* ListOfGlobalRenderInformation::createGlobalRenderInformation()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:609:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 609 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘virtual SBase* ListOfGlobalRenderInformation::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:844:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 844 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘ListOfGlobalRenderInformation::readAttributes(XMLAttributes const&, ExpectedAttributes const&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:942:40: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 942 | if (log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:900:16: note: ‘numErrs’ was declared here 900 | unsigned int numErrs; | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.h:66: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function ‘GlobalStyle* ListOfGlobalStyles::createGlobalStyle()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:287:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 287 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function ‘virtual SBase* ListOfGlobalStyles::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:352:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 352 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.h:66: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘LinearGradient* ListOfGradientDefinitions::createLinearGradient()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:310:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 310 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘RadialGradient* ListOfGradientDefinitions::createRadialGradient()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:339:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 339 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘virtual SBase* ListOfGradientDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:399:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 399 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Ellipse.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Ellipse.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Ellipse.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Ellipse.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Ellipse.h:68: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Ellipse.cpp:65: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 30%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/DefaultValues.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/DefaultValues.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/DefaultValues.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/DefaultValues.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.h:102, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/DefaultValues.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.h:93: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.h:83, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.h:80: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.h:84: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function ‘GradientStop* ListOfGradientStops::createGradientStop()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:308:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 308 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function ‘virtual SBase* ListOfGradientStops::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:368:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 368 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalStyle.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalStyle.h:66: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalStyle.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.h:68: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.h:72: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function ‘LineEnding* ListOfLineEndings::createLineEnding()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:299:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 299 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function ‘virtual SBase* ListOfLineEndings::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:373:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 373 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.h:64: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp: In member function ‘GlobalStyle* GlobalRenderInformation::createGlobalStyle()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GlobalRenderInformation.cpp:369:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 369 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.h:68: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.h:72: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘DefaultValues* ListOfLocalRenderInformation::createDefaultValues()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:426:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 426 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘LocalRenderInformation* ListOfLocalRenderInformation::createLocalRenderInformation()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:590:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 590 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘virtual SBase* ListOfLocalRenderInformation::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:794:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 794 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘ListOfLocalRenderInformation::readAttributes(XMLAttributes const&, ExpectedAttributes const&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:892:40: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 892 | if (log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:850:16: note: ‘numErrs’ was declared here 850 | unsigned int numErrs; | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.h:67: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:178:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 178 | struct IdEqLocalStyle : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function ‘LocalStyle* ListOfLocalStyles::createLocalStyle()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:303:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 303 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function ‘virtual SBase* ListOfLocalStyles::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:368:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 368 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientStop.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientStop.h:84, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientStop.h:80: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientStop.cpp:56: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GradientBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.h:102, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.h:93: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp: In member function ‘GradientStop* GradientBase::createGradientStop()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.cpp:569:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 569 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:74: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:56: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function ‘LocalStyle* LocalRenderInformation::createLocalStyle()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:343:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 343 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function ‘LocalStyle* LocalRenderInformation::createStyle(const std::string&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:367:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 367 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalStyle.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalStyle.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.h:64: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp:59: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:63: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Polygon.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Polygon.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Polygon.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Polygon.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.h:70: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.h:75: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In constructor ‘Polygon::Polygon(const XMLNode&, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:124:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 124 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function ‘RenderPoint* Polygon::createPoint()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/Rmake[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' enderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:425:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 425 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function ‘RenderCubicBezier* Polygon::createCubicBezier()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:453:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 453 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RadialGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RadialGradient.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RadialGradient.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RadialGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RadialGradient.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.h:102, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RadialGradient.h:80, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RadialGradient.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RadialGradient.h:72: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RadialGradient.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Image.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Image.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Transformation.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Transformation2D.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Image.h:76, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Image.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Image.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Image.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LineEnding.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.h:74: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘RenderGroup* LineEnding::createGroup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:535:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 535 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘BoundingBox* LineEnding::createBoundingBox()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:561:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 561 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘virtual SBase* LineEnding::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1315:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 1315 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:75:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 75 | EXTENSION_CREATE_NS(LayoutPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1317:3: note: in expansion of macro ‘LAYOUT_CREATE_NS’ 1317 | LAYOUT_CREATE_NS(layoutns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp: In member function ‘LineEnding::readAttributes(XMLAttributes const&, ExpectedAttributes const&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1489:47: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 1489 | if (log && log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LineEnding.cpp:1393:16: note: ‘numErrs’ was declared here 1393 | unsigned int numErrs; | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RelAbsVector.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RelAbsVector.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RelAbsVector.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RelAbsVector.h:71: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 31%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Rectangle.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Rectangle.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Rectangle.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Rectangle.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Rectangle.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Rectangle.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Rectangle.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Rectangle.h:66: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Rectangle.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfColorDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.h:62: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.h:66: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function ‘ColorDefinition* ListOfColorDefinitions::createColorDefinition()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:299:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 299 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp: In member function ‘virtual SBase* ListOfColorDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfColorDefinitions.cpp:371:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 371 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 32%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LinearGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LinearGradient.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.h:102, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LinearGradient.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LinearGradient.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LinearGradient.h:70: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LinearGradient.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfCurveElements.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:68: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:75: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:73: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function ‘RenderCubicBezier* ListOfCurveElements::createCubicBezier()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:328:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 328 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp: In member function ‘virtual SBase* ListOfCurveElements::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.cpp:417:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 417 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCurve.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCurve.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.h:269, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:46: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Dimensions.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:67: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function ‘RenderPoint* RenderCurve::createPoint()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:477:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 477 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function ‘RenderCubicBezier* RenderCurve::createCubicBezier()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:505:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 505 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfDrawables.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.h:71: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.h:75: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Image* ListOfDrawables::createImage()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:265:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 265 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Ellipse* ListOfDrawables::createEllipse()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:293:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 293 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Rectangle* ListOfDrawables::createRectangle()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:321:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 321 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Polygon* ListOfDrawables::createPolygon()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:349:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 349 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘RenderGroup* ListOfDrawables::createGroup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:377:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 377 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘LineEnding* ListOfDrawables::createLineEnding()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:405:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 405 | RENDER_CREATE_NS(renderns, getSBMLmake[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' Namespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘Text* ListOfDrawables::createText()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:433:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 433 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘RenderCurve* ListOfDrawables::createCurve()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:461:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 461 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp: In member function ‘virtual SBase* ListOfDrawables::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfDrawables.cpp:521:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 521 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.h:66: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘DefaultValues* ListOfGlobalRenderInformation::createDefaultValues()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:429:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 429 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: At global scope: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:476:50: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 476 | struct IdEqGlobalRenderInformation : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘GlobalRenderInformation* ListOfGlobalRenderInformation::createGlobalRenderInformation()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:609:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 609 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘virtual SBase* ListOfGlobalRenderInformation::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:844:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 844 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp: In member function ‘ListOfGlobalRenderInformation::readAttributes(XMLAttributes const&, ExpectedAttributes const&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:942:40: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 942 | if (log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalRenderInformation.cpp:900:16: note: ‘numErrs’ was declared here 900 | unsigned int numErrs; | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGlobalStyles.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.h:66: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function ‘GlobalStyle* ListOfGlobalStyles::createGlobalStyle()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:287:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 287 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp: In member function ‘virtual SBase* ListOfGlobalStyles::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGlobalStyles.cpp:352:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 352 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:74: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘ColorDefinition* RenderInformationBase::createColorDefinition()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:738:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 738 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘LinearGradient* RenderInformationBase::createLinearGradientDefinition()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:900:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 900 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘RadialGradient* RenderInformationBase::createRadialGradientDefinition()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:928:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 928 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘LineEnding* RenderInformationBase::createLineEnding()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:1090:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1090 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:76, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:56: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:65: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Image* RenderGroup::createImage()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1118:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1118 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Ellipse* RenderGroup::createEllipse()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1146:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1146 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Rectangle* RenderGroup::createRectangle()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1174:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1174 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Polygon* RenderGroup::createPolygon()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1202:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1202 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘RenderGroup* RenderGroup::createGroup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1230:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1230 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘LineEnding* RenderGroup::createLineEnding()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1258:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1258 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Text* RenderGroup::createText()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1286:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1286 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘RenderCurve* RenderGroup::createCurve()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1314:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1314 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘void RenderGroup::importOldCurve(const XMLNode&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2631:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 2631 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.h:66: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘LinearGradient* ListOfGradientDefinitions::createLinearGradient()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:310:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 310 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘RadialGradient* ListOfGradientDefinitions::createRadialGradient()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:339:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 339 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp: In member function ‘virtual SBase* ListOfGradientDefinitions::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientDefinitions.cpp:399:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 399 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfGradientStops.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.h:83, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.h:80: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.h:84: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function ‘GradientStop* ListOfGradientStops::createGradientStop()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:308:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 308 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp: In member function ‘virtual SBase* ListOfGradientStops::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfGradientStops.cpp:368:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 368 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderPoint.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderPoint.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/RenderPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderPoint.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderPoint.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderPoint.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderPoint.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderPoint.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderPoint.cpp:61: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLineEndings.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.h:68: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.h:72: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function ‘LineEnding* ListOfLineEndings::createLineEnding()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:299:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 299 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp: In member function ‘virtual SBase* ListOfLineEndings::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLineEndings.cpp:373:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 373 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.h:68: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.h:72: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘DefaultValues* ListOfLocalRenderInformation::createDefaultValues()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:426:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 426 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘LocalRenderInformation* ListOfLocalRenderInformation::createLocalRenderInformation()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:590:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 590 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘virtual SBase* ListOfLocalRenderInformation::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:794:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 794 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp: In member function ‘ListOfLocalRenderInformation::readAttributes(XMLAttributes const&, ExpectedAttributes const&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:892:40: warning: ‘numErrs’ may be used uninitialized [-Wmaybe-uninitialized] 892 | if (log->getNumErrors() == numErrs + 1 && | ~~~~~~~~^~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalRenderInformation.cpp:850:16: note: ‘numErrs’ was declared here 850 | unsigned int numErrs; | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Style.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.h:64: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp: In member function ‘bool Style::isSetGroup() const’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp:564:19: warning: the address of ‘Style::mGroup’ will never be NULL [-Waddress] 564 | return (&mGroup != NULL); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.h:92:15: note: ‘Style::mGroup’ declared here 92 | RenderGroup mGroup; | ^~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp: In member function ‘RenderGroup* Style::createGroup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp:597:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 597 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp: In member function ‘virtual SBase* Style::getElementBySId(const std::string&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp:1178:15: warning: the address of ‘Style::mGroup’ will never be NULL [-Waddress] 1178 | if (&mGroup != NULL) | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.h:92:15: note: ‘Style::mGroup’ declared here 92 | Rendermake[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' Group mGroup; | ^~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp: In member function ‘virtual SBase* Style::getElementByMetaId(const std::string&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp:1210:15: warning: the address of ‘Style::mGroup’ will never be NULL [-Waddress] 1210 | if (&mGroup != NULL) | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.h:92:15: note: ‘Style::mGroup’ declared here 92 | RenderGroup mGroup; | ^~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp: In member function ‘virtual SBase* Style::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp:1269:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 1269 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/ListOfLocalStyles.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.h:67: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:178:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 178 | struct IdEqLocalStyle : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function ‘LocalStyle* ListOfLocalStyles::createLocalStyle()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:303:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 303 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp: In member function ‘virtual SBase* ListOfLocalStyles::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfLocalStyles.cpp:368:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 368 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:74: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:56: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function ‘LocalStyle* LocalRenderInformation::createLocalStyle()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:343:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 343 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp: In member function ‘LocalStyle* LocalRenderInformation::createStyle(const std::string&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalRenderInformation.cpp:367:5: note: in expansion of macro ‘RENDER_CREATE_NSâmake[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' €™ 367 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Transformation.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Transformation.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Transformation.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Transformation.h:64: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Text.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Text.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Text.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Text.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Text.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Text.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Text.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Text.h:70: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Text.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 33%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/LocalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalStyle.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.h:64: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/LocalStyle.cpp:59: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Polygon.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.h:70: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.h:75: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In constructor ‘Polygon::Polygon(const XMLNode&, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:124:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 124 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function ‘RenderPoint* Polygon::createPoint()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/Rmake[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' enderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:425:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 425 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp: In member function ‘RenderCubicBezier* Polygon::createCubicBezier()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.cpp:453:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 453 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util/RenderLayoutConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util/RenderLayoutConverter.h:62, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util/RenderLayoutConverter.cpp:36: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util/RenderLayoutConverter.h:61: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common/RenderExtensionTypes.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util/RenderLayoutConverter.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util/RenderLayoutConverter.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:62: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:63: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation2D.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation2D.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation2D.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/sbml/Transformation2D.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Transformation2D.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Transformation.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Transformation2D.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Transformation2D.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Transformation2D.h:70: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/validator/RenderConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/validator/RenderConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/validator/RenderConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/validator/RenderConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/RenderConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints/RenderConsistencyConstraints.cpp:43, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/RenderConsistencyValidator.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/RenderValidator.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/RenderConsistencyValidator.h:52, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/RenderConsistencyValidator.cpp:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/util/RenderUtilities.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/util/RenderUtilities.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/util/RenderUtilities.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/util/RenderUtilities.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util/RenderUtilities.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common/RenderExtensionTypes.h:50, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util/RenderUtilities.h:40, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util/RenderUtilities.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common/RenderExtensionTypes.h:75: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util/RenderUtilities.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:62: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' 28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:63: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RadialGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RadialGradient.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RadialGradient.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RadialGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RadialGradient.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GradientBase.h:102, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RadialGradient.h:80, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RadialGradient.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RadialGradient.h:72: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RadialGradient.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints/RenderIdentifierConsistencyConstraints.cpp:43, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/RenderValidator.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.h:52, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 34%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Rectangle.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Rectangle.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Rectangle.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Rectangle.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Rectangle.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Rectangle.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Rectangle.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Rectangle.h:66: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Rectangle.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RelAbsVector.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RelAbsVector.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RelAbsVector.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RelAbsVector.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RelAbsVector.h:71: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/CVTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/CVTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/render/validator/RenderValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/packages/render/validator/RenderValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/packages/render/validator/RenderValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/packages/render/validator/RenderValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/RenderValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/RenderValidator.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:56: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/RenderValidator.cpp:68:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 68 | struct Apply : public unary_function*, void> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/Date.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/annotation/Date.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/annotation/Date.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/annotation/Date.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:463:29: warning: ‘%u’ directive output may be truncated writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-truncation=] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:463:25: note: directive argument in the range [10, 4294967295] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~~~~~~~ In file included from /usr/include/stdio.h:964, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4097, from /usr/include/c++/13/string:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.h:193, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:39: In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:463:13: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 6 and 23 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:469:28: warning: ‘T’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 469 | snprintf(cdate, 10, "%uT", mDay); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:469:13: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 4 and 12 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:475:28: warning: ‘:’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 475 | snprintf(cdate, 10, "%u:", mHour); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:475:13: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 4 and 12 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:481:28: warning: ‘:’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 481 | snprintf(cdate, 10, "%u:", mMinute); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:481:13: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 4 and 12 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:487:28: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 487 | snprintf(cdate, 10, "%u", mSecond); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:487:13: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 3 and 11 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:506:30: warning: ‘:’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 506 | snprintf(cdate, 10, "%u:", mHoursOffset); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:506:15: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 4 and 12 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:512:30: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncatmake[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' ion=] 512 | snprintf(cdate, 10, "%u", mMinutesOffset); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:512:15: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 3 and 11 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/ModelCreator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/annotation/ModelCreator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/annotation/ModelCreator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/annotation/ModelCreator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/ModelCreator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/ModelHistory.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/annotation/ModelHistory.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/annotation/ModelHistory.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/annotation/ModelHistory.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/ModelHistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderCurve.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.h:269, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:46: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Dimensions.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:67: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function ‘RenderPoint* RenderCurve::createPoint()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:477:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 477 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp: In member function ‘RenderCubicBezier* RenderCurve::createCubicBezier()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCurve.cpp:505:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 505 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/common/libsbml-version.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints 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src/CMakeFiles/sbml-static.dir/sbml/common/libsbml-version.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/common/libsbml-version.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/common/libsbml-version.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/libsbml-version.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/common/operationReturnValues.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/ConversionOption.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/annotation/RDFAnnotationParser.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/annotation/RDFAnnotationParser.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/annotation/RDFAnnotationParser.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/annotation/RDFAnnotationParser.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.cpp:38: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderInformationBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.h:74: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘ColorDefinition* RenderInformationBase::createColorDefinition()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:738:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 738 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘LinearGradient* RenderInformationBase::createLinearGradientDefinition()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:900:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 900 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘RadialGradient* RenderInformationBase::createRadialGradientDefinition()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:928:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 928 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp: In member function ‘LineEnding* RenderInformationBase::createLineEnding()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderInformationBase.cpp:1090:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1090 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/ConversionProperties.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/ConversionProperties.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/ConversionProperties.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/ConversionProperties.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/ConversionProperties.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/RegisterConverters.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/RegisterConverters.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/RegisterConverters.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/RegisterConverters.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/RegisterConverters.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLFunctionDefinitionConverter.h:85, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/RegisterConverters.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLFunctionDefinitionConverter.h:84: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderGroup.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive2D.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:76, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:56: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:65: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Image* RenderGroup::createImage()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1118:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1118 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Ellipse* RenderGroup::createEllipse()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,smake[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' bmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1146:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1146 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Rectangle* RenderGroup::createRectangle()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1174:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1174 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Polygon* RenderGroup::createPolygon()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1202:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1202 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘RenderGroup* RenderGroup::createGroup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1230:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1230 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘LineEnding* RenderGroup::createLineEnding()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1258:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1258 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘Text* RenderGroup::createText()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1286:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1286 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘RenderCurve* RenderGroup::createCurve()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:1314:5: note: in expansion of macro ‘RENDER_CREATE_NS’ 1314 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp: In member function ‘void RenderGroup::importOldCurve(const XMLNode&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderGroup.cpp:2631:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 2631 | RENDER_CREATE_NS(renderns, this->getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:61: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverterRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverterRegistry.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverterRegistry.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLConverterRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverterRegistry.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverterRegistry.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverterRegistry.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverterRegistry.cpp:46: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderPoint.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderPoint.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/RenderPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderPoint.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderPoint.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderPoint.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderPoint.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderPoint.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderPoint.cpp:61: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLFunctionDefinitionConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLFunctionDefinitionConverter.h:85, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLFunctionDefinitionConverter.h:84: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLIdConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLIdConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLIdConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLIdConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLIdConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLIdConverter.h:87, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLIdConverter.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLIdConverter.h:86: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Style.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.h:64: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp: In member function ‘bool Style::isSetGroup() const’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp:564:19: warning: the address of ‘Style::mGroup’ will never be NULL [-Waddress] 564 | return (&mGroup != NULL); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.h:92:15: note: ‘Style::mGroup’ declared here 92 | RenderGroup mGroup; | ^~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp: In member function ‘RenderGroup* Style::createGroup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp:597:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 597 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp: In member function ‘virtual SBase* Style::getElementBySId(const std::string&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp:1178:15: warning: the address of ‘Style::mGroup’ will never be NULL [-Waddress] 1178 | if (&mGroup != NULL) | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.h:92:15: note: ‘Style::mGroup’ declared here 92 | Rendermake[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' Group mGroup; | ^~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp: In member function ‘virtual SBase* Style::getElementByMetaId(const std::string&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp:1210:15: warning: the address of ‘Style::mGroup’ will never be NULL [-Waddress] 1210 | if (&mGroup != NULL) | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.h:92:15: note: ‘Style::mGroup’ declared here 92 | RenderGroup mGroup; | ^~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp: In member function ‘virtual SBase* Style::createObject(XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:121:32: warning: catching polymorphic type ‘class SBMLExtensionException’ by value [-Wcatch-value=] 121 | catch (SBMLExtensionException e)\ | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:137:3: note: in expansion of macro ‘EXTENSION_CREATE_NS_WITH_VERSION’ 137 | EXTENSION_CREATE_NS_WITH_VERSION(type,variable,sbmlns,1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:66:3: note: in expansion of macro ‘EXTENSION_CREATE_NS’ 66 | EXTENSION_CREATE_NS(RenderPkgNamespaces,variable,sbmlns); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.cpp:1269:3: note: in expansion of macro ‘RENDER_CREATE_NS’ 1269 | RENDER_CREATE_NS(renderns, getSBMLNamespaces()); | ^~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLInferUnitsConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLInferUnitsConverter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLInferUnitsConverter.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:61: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLInitialAssignmentConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLInitialAssignmentConverter.h:98, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLInitialAssignmentConverter.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLInitialAssignmentConverter.h:97: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLLevel1Version1Converter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLLevel1Version1Converter.h:92, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLLevel1Version1Converter.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLLevel1Version1Converter.h:91: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLLocalParameterConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLLocalParameterConverter.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLLocalParameterConverter.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLLocalParameterConverter.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLLevelVersionConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLLevelVersionConverter.h:94, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLLevelVersionConverter.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLLevelVersionConverter.h:93: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRateOfConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRateOfConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRateOfConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRateOfConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLRateOfConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLRateOfConverter.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLRateOfConverter.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLRateOfConverter.h:70: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Text.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Text.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Text.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Text.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Text.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/GraphicalPrimitive1D.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Text.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Text.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Text.h:70: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutAnnotation.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Text.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLReactionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLReactionConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLReactionConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLReactionConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLReactionConverter.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLReactionConverter.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLReactionConverter.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLReactionConverter.h:67: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLStripPackageConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLStripPackageConverter.h:81, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLStripPackageConverter.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLStripPackageConverter.h:80: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Transformation.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Transformation.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Transformation.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Transformation.h:64: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 36%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRuleConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRuleConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRuleConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLRuleConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLRuleConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLRuleConverter.h:97, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLRuleConverter.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLRuleConverter.h:96: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:51: In function ‘std::__copy_move::__copy_m(AssignmentRule* const*, AssignmentRule* const*, AssignmentRule**)AssignmentRule**’, inlined from ‘std::__copy_move_a2(AssignmentRule* const*, AssignmentRule* const*, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(AssignmentRule* const*, AssignmentRule* const*, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy<__gnu_cxx::__normal_iterator > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy<__gnu_cxx::__normal_iterator > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘std::__uninitialized_copy_a<__gnu_cxx::__normal_iterator > >, AssignmentRule**, AssignmentRule*>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**, std::allocator&)AssignmentRule**’ at /usr/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector >::vector(std::vector > const&)’ at /usr/include/c++/13/bits/stl_vector.h:603:31, inlined from ‘reorderRules(std::vector >&)’ at /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLRuleConverter.cpp:173:42: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 8 is out of the bounds [0, 8] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 37%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLUnitsConverter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/conversion/SBMLUnitsConverter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/conversion/SBMLUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLUnitsConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLUnitsConverter.h:80, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLUnitsConverter.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLUnitsConverter.h:79: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 37%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/ASTBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/extension/ASTBasePlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/extension/ASTBasePlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/extension/ASTBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:61: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h: In copy constructor ‘ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:487:24: warning: ‘ASTBasePlugin::mExtendedMathType’ will be initialized after [-Wreorder] 487 | ExtendedMathType_t mExtendedMathType; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:486:34: warning: ‘std::vector ASTBasePlugin::mPkgASTNodeValues’ [-Wreorder] 486 | std::vector mPkgASTNodeValues; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.cpp:314:1: warning: when initialized here [-Wreorder] 314 | ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin& orig) | ^~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ISBMLExtensionNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegistry.h:59, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ISBMLExtensionNamespaces.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ISBMLExtensionNamespaces.cpp:49: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation2D.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation2D.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation2D.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/sbml/Transformation2D.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Transformation2D.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Transformation.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Transformation2D.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Transformation2D.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Transformation2D.h:70: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/extension/SBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/extension/SBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPluginNotRequired.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPluginNotRequired.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPluginNotRequired.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/util/RenderLayoutConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util/RenderLayoutConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util/RenderLayoutConverter.h:62, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util/RenderLayoutConverter.cpp:36: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util/RenderLayoutConverter.h:61: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common/RenderExtensionTypes.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util/RenderLayoutConverter.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util/RenderLayoutConverter.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:62: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:63: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionException.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionException.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionException.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionException.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionException.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/util/RenderUtilities.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/util/RenderUtilities.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/util/RenderUtilities.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/util/RenderUtilities.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util/RenderUtilities.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common/RenderExtensionTypes.h:50, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util/RenderUtilities.h:40, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util/RenderUtilities.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common/RenderExtensionTypes.h:75: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util/RenderUtilities.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:62: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' 28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:63: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/RenderConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints/RenderConsistencyConstraints.cpp:43, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/RenderConsistencyValidator.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/RenderValidator.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/RenderConsistencyValidator.h:52, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/RenderConsistencyValidator.cpp:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionNamespaces.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegistry.h:59, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionNamespaces.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionNamespaces.cpp:48: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtension.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtension.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints/RenderIdentifierConsistencyConstraints.cpp:43, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/RenderValidator.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.h:52, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/RenderIdentifierConsistencyValidator.cpp:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBaseExtensionPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common 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make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionRegistry.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionRegistry.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/extension/SBMLExtensionRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegistry.h:59, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘bool SBMLExtensionRegistry::setEnabled(const std::string&, bool)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:368:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 368 | return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:368:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses] make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/packages/render/validator/RenderValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/RenderValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/RenderValidator.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:56: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/RenderValidator.cpp:68:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 68 | struct Apply : public unary_function*, void> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o -MF CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o.d -o CMakeFiles/sbml.dir/sbml/annotation/Date.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:463:29: warning: ‘%u’ directive output may be truncated writing between 2 and 10 bytes into a region of size between 0 and 8 [-Wformat-truncation=] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:463:25: note: directive argument in the range [10, 4294967295] 463 | snprintf(cdate, 10, "%u-%u-", mYear, mMonth); | ^~~~~~~~ In file included from /usr/include/stdio.h:964, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4097, from /usr/include/c++/13/string:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.h:193, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:39: In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:463:13: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 6 and 23 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:469:28: warning: ‘T’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 469 | snprintf(cdate, 10, "%uT", mDay); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:469:13: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 4 and 12 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:475:28: warning: ‘:’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 475 | snprintf(cdate, 10, "%u:", mHour); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:475:13: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 4 and 12 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:481:28: warning: ‘:’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 481 | snprintf(cdate, 10, "%u:", mMinute); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:481:13: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 4 and 12 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:487:28: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncation=] 487 | snprintf(cdate, 10, "%u", mSecond); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:487:13: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 3 and 11 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:506:30: warning: ‘:’ directive output may be truncated writing 1 byte into a region of size between 0 and 8 [-Wformat-truncation=] 506 | snprintf(cdate, 10, "%u:", mHoursOffset); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:506:15: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 4 and 12 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp: In member function ‘Date::parseDateNumbersToString()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:512:30: warning: ‘__snprintf_chk’ output may be truncated before the last format character [-Wformat-truncatmake[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' ion=] 512 | snprintf(cdate, 10, "%u", mMinutesOffset); | ^ In function ‘snprintf’, inlined from ‘Date::parseDateNumbersToString()’ at /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/Date.cpp:512:15: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 3 and 11 bytes into a destination of size 10 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/extension/SBasePlugin.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/extension/SBasePlugin.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/extension/SBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:68: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/ModelHistory.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src 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CMakeFiles/sbml.dir/sbml/annotation/ModelHistory.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/ModelHistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/ModelCreator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/ModelCreator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 38%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/extension/SBasePluginCreatorBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/extension/SBasePluginCreatorBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/extension/SBasePluginCreatorBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/extension/SBasePluginCreatorBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 39%] Building CXX object src/CMakeFiles/sbml.dir/sbml/common/libsbml-version.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/AlgebraicRule.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/AlgebraicRule.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/AlgebraicRule.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AlgebraicRule.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AlgebraicRule.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AlgebraicRule.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AlgebraicRule.cpp: In function ‘AlgebraicRule_t* AlgebraicRule_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AlgebraicRule.cpp:410:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 410 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AlgebraicRule.cpp: In function ‘AlgebraicRule_t* AlgebraicRule_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AlgebraicRule.cpp:426:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 426 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/AssignmentRule.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/AssignmentRule.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/AssignmentRule.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/AssignmentRule.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.cpp: In function ‘AssignmentRule_t* AssignmentRule_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.cpp:534:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 534 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.cpp: In function ‘AssignmentRule_t* AssignmentRule_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.cpp:550:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 550 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/ConversionOption.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/ConversionOption.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/ConversionOption.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/ConversionOption.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/ConversionOption.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 39%] Building CXX object src/CMakeFiles/sbml.dir/sbml/annotation/RDFAnnotationParser.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/annotation/RDFAnnotationParser.cpp.o -MF CMakeFiles/sbml.dir/sbml/annotation/RDFAnnotationParser.cpp.o.d -o CMakeFiles/sbml.dir/sbml/annotation/RDFAnnotationParser.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.cpp:38: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Compartment.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/Compartment.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/Compartment.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/Compartment.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.cpp:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.cpp: In function ‘Compartment_t* Compartment_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.cpp:2124:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2124 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.cpp: In function ‘Compartment_t* Compartment_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.cpp:2140:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2140 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/CompartmentType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/CompartmentType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/CompartmentType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/CompartmentType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/CompartmentType.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/CompartmentType.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/CompartmentType.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/CompartmentType.cpp:766:24: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 766 | struct IdEqCT : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/CompartmentType.cpp: In function ‘CompartmentType_t* CompartmentType_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/CompartmentType.cpp:885:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 885 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/CompartmentType.cpp: In function ‘CompartmentType_t* CompartmentType_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/CompartmentType.cpp:901:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 901 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/ConversionProperties.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/ConversionProperties.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/ConversionProperties.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/ConversionProperties.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/ConversionProperties.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/RegisterConverters.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/RegisterConverters.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/RegisterConverters.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/RegisterConverters.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/RegisterConverters.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLFunctionDefinitionConverter.h:85, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/RegisterConverters.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLFunctionDefinitionConverter.h:84: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:61: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Delay.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/Delay.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/Delay.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/Delay.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Delay.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Delay.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Delay.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Delay.cpp: In function ‘Delay_t* Delay_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Delay.cpp:893:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 893 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Delay.cpp: In function ‘Delay_t* Delay_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Delay.cpp:909:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 909 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Constraint.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/Constraint.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/Constraint.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/Constraint.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Constraint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Constraint.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Constraint.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Constraint.cpp: In function ‘Constraint_t* Constraint_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Constraint.cpp:1145:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1145 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Constraint.cpp: In function ‘Constraint_t* Constraint_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Constraint.cpp:1161:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1161 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLConverterRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLConverterRegistry.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLConverterRegistry.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLConverterRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverterRegistry.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverterRegistry.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverterRegistry.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverterRegistry.cpp:46: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLFunctionDefinitionConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLFunctionDefinitionConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLFunctionDefinitionConverter.h:85, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLFunctionDefinitionConverter.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLFunctionDefinitionConverter.h:84: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLIdConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLIdConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLIdConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLIdConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLIdConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLIdConverter.h:87, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLIdConverter.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLIdConverter.h:86: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/EventAssignment.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/EventAssignment.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/EventAssignment.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/EventAssignment.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/EventAssignment.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/EventAssignment.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/EventAssignment.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/EventAssignment.cpp:1164:24: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 1164 | struct IdEqEA : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/EventAssignment.cpp: In function ‘EventAssignment_t* EventAssignment_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/EventAssignment.cpp:1298:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1298 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/EventAssignment.cpp: In function ‘EventAssignment_t* EventAssignment_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/EventAssignment.cpp:1314:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1314 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLInferUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLInferUnitsConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLInferUnitsConverter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLInferUnitsConverter.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:61: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Event.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/Event.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/Event.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/Event.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Event.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Event.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Event.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Event.cpp:2271:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 2271 | struct IdEqE : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Event.cpp: In function ‘Event_t* Event_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Event.cpp:2390:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2390 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Event.cpp: In function ‘Event_t* Event_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Event.cpp:2406:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2406 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/ExpectedAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/ExpectedAttributes.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/ExpectedAttributes.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/ExpectedAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ExpectedAttributes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLInitialAssignmentConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLInitialAssignmentConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLInitialAssignmentConverter.h:98, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLInitialAssignmentConverter.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLInitialAssignmentConverter.h:97: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLLevel1Version1Converter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLLevel1Version1Converter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLLevel1Version1Converter.h:92, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLLevel1Version1Converter.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLLevel1Version1Converter.h:91: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/FunctionDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/FunctionDefinition.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/FunctionDefinition.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/FunctionDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.cpp:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.cpp:1250:24: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 1250 | struct IdEqFD : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.cpp: In function ‘FunctionDefinition_t* FunctionDefinition_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.cpp:1370:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1370 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.cpp: In function ‘FunctionDefinition_t* FunctionDefinition_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.cpp:1386:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1386 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/InitialAssignment.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/InitialAssignment.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/InitialAssignment.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/InitialAssignment.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/InitialAssignment.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/InitialAssignment.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/InitialAssignment.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/InitialAssignment.cpp:1145:24: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 1145 | struct IdEqIA : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/InitialAssignment.cpp: In function ‘InitialAssignment_t* InitialAssignment_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/InitialAssignment.cpp:1280:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1280 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/InitialAssignment.cpp: In function ‘InitialAssignment_t* InitialAssignment_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/InitialAssignment.cpp:1296:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1296 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLLevelVersionConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLLevelVersionConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLLevelVersionConverter.h:94, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLLevelVersionConverter.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLLevelVersionConverter.h:93: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLLocalParameterConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLLocalParameterConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLLocalParameterConverter.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLLocalParameterConverter.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLLocalParameterConverter.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLRateOfConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLRateOfConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLRateOfConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLRateOfConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLRateOfConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLRateOfConverter.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLRateOfConverter.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLRateOfConverter.h:70: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/ListOf.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/ListOf.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/ListOf.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/ListOf.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/functional:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.cpp:86:24: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 86 | struct Delete : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.cpp:104:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 104 | struct Clone : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.cpp:482:33: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 482 | struct SetSBMLDocument : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.cpp:494:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 494 | struct SetParentSBMLObject : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.cpp:564:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 564 | struct Write : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 40%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/KineticLaw.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/KineticLaw.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/KineticLaw.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/KineticLaw.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/KineticLaw.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/KineticLaw.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/KineticLaw.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/KineticLaw.cpp: In function ‘KineticLaw_t* KineticLaw_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/KineticLaw.cpp:2076:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2076 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/KineticLaw.cpp: In function ‘KineticLaw_t* KineticLaw_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/KineticLaw.cpp:2092:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2092 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLReactionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLReactionConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLReactionConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLReactionConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLReactionConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLReactionConverter.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLReactionConverter.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLReactionConverter.h:67: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLStripPackageConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLStripPackageConverter.h:81, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLStripPackageConverter.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLStripPackageConverter.h:80: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/LocalParameter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/LocalParameter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/LocalParameter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/LocalParameter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/LocalParameter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/LocalParameter.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/LocalParameter.cpp:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/LocalParameter.cpp:701:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 701 | struct IdEqP : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/LocalParameter.cpp: In function ‘LocalParameter_t* LocalParameter_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/LocalParameter.cpp:837:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 837 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/LocalParameter.cpp: In function ‘LocalParameter_t* LocalParameter_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/LocalParameter.cpp:853:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 853 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLRuleConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLRuleConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLRuleConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLRuleConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLRuleConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLRuleConverter.h:97, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLRuleConverter.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLRuleConverter.h:96: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:51: In function ‘std::__copy_move::__copy_m(AssignmentRule* const*, AssignmentRule* const*, AssignmentRule**)AssignmentRule**’, inlined from ‘std::__copy_move_a2(AssignmentRule* const*, AssignmentRule* const*, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/13/bits/stl_algobase.h:506:30, inlined from ‘std::__copy_move_a1(AssignmentRule* const*, AssignmentRule* const*, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/13/bits/stl_algobase.h:533:42, inlined from ‘std::__copy_move_a > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/13/bits/stl_algobase.h:540:31, inlined from ‘std::copy<__gnu_cxx::__normal_iterator > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/13/bits/stl_algobase.h:633:7, inlined from ‘std::__uninitialized_copy::__uninit_copy<__gnu_cxx::__normal_iterator > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, inlined from ‘std::uninitialized_copy<__gnu_cxx::__normal_iterator > >, AssignmentRule**>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**)AssignmentRule**’ at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘std::__uninitialized_copy_a<__gnu_cxx::__normal_iterator > >, AssignmentRule**, AssignmentRule*>(__gnu_cxx::__normal_iterator > >, __gnu_cxx::__normal_iterator > >, AssignmentRule**, std::allocator&)AssignmentRule**’ at /usr/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector >::vector(std::vector > const&)’ at /usr/include/c++/13/bits/stl_vector.h:603:31, inlined from ‘reorderRules(std::vector >&)’ at /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLRuleConverter.cpp:173:42: /usr/include/c++/13/bits/stl_algobase.h:437:30: warning: ‘memmove’ forming offset 8 is out of the bounds [0, 8] [-Warray-bounds=] 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/ModifierSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/ModifierSpeciesReference.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/ModifierSpeciesReference.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/ModifierSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ModifierSpeciesReference.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ModifierSpeciesReference.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ModifierSpeciesReference.cpp:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ModifierSpeciesReference.cpp: In function ‘ModifierSpeciesReference_t* ModifierSpeciesReference_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ModifierSpeciesReference.cpp:440:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 440 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ModifierSpeciesReference.cpp: In function ‘ModifierSpeciesReference_t* ModifierSpeciesReference_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ModifierSpeciesReference.cpp:456:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 456 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/conversion/SBMLUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/conversion/SBMLUnitsConverter.cpp.o -MF CMakeFiles/sbml.dir/sbml/conversion/SBMLUnitsConverter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/conversion/SBMLUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLUnitsConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLUnitsConverter.h:80, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLUnitsConverter.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLUnitsConverter.h:79: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/ASTBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:61: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h: In copy constructor ‘ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:487:24: warning: ‘ASTBasePlugin::mExtendedMathType’ will be initialized after [-Wreorder] 487 | ExtendedMathType_t mExtendedMathType; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:486:34: warning: ‘std::vector ASTBasePlugin::mPkgASTNodeValues’ [-Wreorder] 486 | std::vector mPkgASTNodeValues; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.cpp:314:1: warning: when initialized here [-Wreorder] 314 | ASTBasePlugin::ASTBasePlugin(const ASTBasePlugin& orig) | ^~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/ISBMLExtensionNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ISBMLExtensionNamespaces.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegistry.h:59, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ISBMLExtensionNamespaces.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ISBMLExtensionNamespaces.cpp:49: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Parameter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/Parameter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/Parameter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/Parameter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.cpp:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.cpp:1894:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 1894 | struct IdEqP : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.cpp: In function ‘Parameter_t* Parameter_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.cpp:2012:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2012 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.cpp: In function ‘Parameter_t* Parameter_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.cpp:2028:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2028 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBMLDocumentPluginNotRequired.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPluginNotRequired.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPluginNotRequired.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPluginNotRequired.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.h:111, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:73: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Model.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/Model.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/Model.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/Model.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp: In function ‘Model_t* Model_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp:7433:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 7433 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp: In function ‘Model_t* Model_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp:7449:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 7449 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp: In member function ‘Model::createConstraintUnitsData(UnitFormulaFormatter*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp:6731:32: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 4 [-Wformat-overflow=] 6731 | sprintf(newId, "constraint_%u", n); | ^~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp:6731:20: note: directive argument in the range [0, 4294967294] 6731 | sprintf(newId, "constraint_%u", n); | ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:964, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4097, from /usr/include/c++/13/string:54: In function ‘sprintf’, inlined from ‘Model::createConstraintUnitsData(UnitFormulaFormatter*)’ at /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp:6731:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 13 and 22 bytes into a destination of size 15 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp: In member function ‘Model::createEventUnitsData(UnitFormulaFormatter*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp:6948:27: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=] 6948 | sprintf(newId, "event_%u", countEvents); | ^~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp:6948:20: note: directive argument in the range [0, 4294967294] 6948 | sprintf(newId, "event_%u", countEvents); | ^~~~~~~~~~ In function ‘sprintf’, inlined from ‘Model::createEventUnitsData(UnitFormulaFormatter*)’ at /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp:6948:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 8 and 17 bytes into a destination of size 12 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionException.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionException.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionException.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionException.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionException.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Priority.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/Priority.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/Priority.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/Priority.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Priority.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Priority.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Priority.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Priority.cpp: In function ‘Priority_t* Priority_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Priority.cpp:741:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 741 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Priority.cpp: In function ‘Priority_t* Priority_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Priority.cpp:757:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 757 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionNamespaces.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegistry.h:59, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionNamespaces.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionNamespaces.cpp:48: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtension.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBMLExtension.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/RateRule.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/RateRule.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/RateRule.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/RateRule.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/RateRule.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/RateRule.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/RateRule.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/RateRule.cpp: In function ‘RateRule_t* RateRule_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/RateRule.cpp:532:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 532 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/RateRule.cpp: In function ‘RateRule_t* RateRule_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/RateRule.cpp:548:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 548 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBaseExtensionPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBaseExtensionPoint.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBaseExtensionPoint.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBaseExtensionPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBaseExtensionPoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionRegistry.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionRegistry.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBMLExtensionRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegistry.h:59, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp: In member function ‘bool SBMLExtensionRegistry::setEnabled(const std::string&, bool)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:368:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 368 | return (sbmlext) ? sbmlext->mIsEnabled = isEnabled : false; | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegistry.cpp:368:42: warning: suggest parentheses around assignment used as truth value [-Wparentheses] make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBasePlugin.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBasePlugin.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:68: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Reaction.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/Reaction.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/Reaction.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/Reaction.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Reaction.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.h:269, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Reaction.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Reaction.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Reaction.cpp: In function ‘Reaction_t* Reaction_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Reaction.cpp:2695:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2695 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Reaction.cpp: In function ‘Reaction_t* Reaction_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Reaction.cpp:2711:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2711 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Rule.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/Rule.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/Rule.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/Rule.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:1676:26: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 1676 | struct IdEqRule : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAlgebraic(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:1917:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1917 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAlgebraicWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:1933:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1933 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAssignment(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:1949:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1949 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAssignmentWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:1965:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1965 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp: In function ‘Rule_t* Rule_createRate(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:1981:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1981 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp: In function ‘Rule_t* Rule_createRateWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:1997:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1997 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLConstructorException.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator 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CMakeFiles/sbml-static.dir/sbml/SBMLConstructorException.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/SBMLConstructorException.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLConstructorException.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/extension/SBasePluginCreatorBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/extension/SBasePluginCreatorBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/extension/SBasePluginCreatorBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/extension/SBasePluginCreatorBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/AlgebraicRule.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/AlgebraicRule.cpp.o -MF CMakeFiles/sbml.dir/sbml/AlgebraicRule.cpp.o.d -o CMakeFiles/sbml.dir/sbml/AlgebraicRule.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AlgebraicRule.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AlgebraicRule.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AlgebraicRule.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AlgebraicRule.cpp: In function ‘AlgebraicRule_t* AlgebraicRule_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AlgebraicRule.cpp:410:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 410 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AlgebraicRule.cpp: In function ‘AlgebraicRule_t* AlgebraicRule_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AlgebraicRule.cpp:426:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 426 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/AssignmentRule.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/AssignmentRule.cpp.o -MF CMakeFiles/sbml.dir/sbml/AssignmentRule.cpp.o.d -o CMakeFiles/sbml.dir/sbml/AssignmentRule.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.cpp: In function ‘AssignmentRule_t* AssignmentRule_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.cpp:534:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 534 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.cpp: In function ‘AssignmentRule_t* AssignmentRule_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.cpp:550:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 550 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLConvert.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/SBMLConvert.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/SBMLConvert.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/SBMLConvert.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLConvert.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLConvert.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLConvert.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Compartment.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Compartment.cpp.o -MF CMakeFiles/sbml.dir/sbml/Compartment.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Compartment.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.cpp:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.cpp: In function ‘Compartment_t* Compartment_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.cpp:2124:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2124 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.cpp: In function ‘Compartment_t* Compartment_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.cpp:2140:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2140 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/CompartmentType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/CompartmentType.cpp.o -MF CMakeFiles/sbml.dir/sbml/CompartmentType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/CompartmentType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/CompartmentType.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/CompartmentType.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/CompartmentType.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/CompartmentType.cpp:766:24: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 766 | struct IdEqCT : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/CompartmentType.cpp: In function ‘CompartmentType_t* CompartmentType_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/CompartmentType.cpp:885:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 885 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/CompartmentType.cpp: In function ‘CompartmentType_t* CompartmentType_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/CompartmentType.cpp:901:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 901 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLError.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/SBMLError.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/SBMLError.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/SBMLError.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegistry.h:59, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLDocument.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/SBMLDocument.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/SBMLDocument.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/SBMLDocument.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLValidator.h:84, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLInternalValidator.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_create()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp:2312:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2312 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_createWithLevelAndVersion(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp:2328:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2328 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_createWithSBMLNamespaces(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp:2344:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2344 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLErrorLog.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/SBMLErrorLog.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/SBMLErrorLog.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/SBMLErrorLog.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.cpp /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.cpp:93:24: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 93 | struct Delete : public unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/functional:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Delay.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Delay.cpp.o -MF CMakeFiles/sbml.dir/sbml/Delay.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Delay.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Delay.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Delay.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Delay.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Delay.cpp: In function ‘Delay_t* Delay_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Delay.cpp:893:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 893 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Delay.cpp: In function ‘Delay_t* Delay_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Delay.cpp:909:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 909 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 43%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Constraint.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Constraint.cpp.o -MF CMakeFiles/sbml.dir/sbml/Constraint.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Constraint.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Constraint.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Constraint.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Constraint.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Constraint.cpp: In function ‘Constraint_t* Constraint_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Constraint.cpp:1145:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1145 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Constraint.cpp: In function ‘Constraint_t* Constraint_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Constraint.cpp:1161:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1161 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/SBMLNamespaces.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/SBMLNamespaces.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/SBMLNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegistry.h:59, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLReader.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/SBMLReader.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/SBMLReader.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/SBMLReader.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLReader.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLReader.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLReader.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/EventAssignment.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/EventAssignment.cpp.o -MF CMakeFiles/sbml.dir/sbml/EventAssignment.cpp.o.d -o CMakeFiles/sbml.dir/sbml/EventAssignment.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/EventAssignment.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/EventAssignment.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/EventAssignment.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/EventAssignment.cpp:1164:24: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 1164 | struct IdEqEA : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/EventAssignment.cpp: In function ‘EventAssignment_t* EventAssignment_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/EventAssignment.cpp:1298:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1298 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/EventAssignment.cpp: In function ‘EventAssignment_t* EventAssignment_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/EventAssignment.cpp:1314:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1314 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLTypeCodes.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/SBMLTypeCodes.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/SBMLTypeCodes.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/SBMLTypeCodes.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypeCodes.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypeCodes.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypeCodes.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Event.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Event.cpp.o -MF CMakeFiles/sbml.dir/sbml/Event.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Event.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Event.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Event.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Event.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Event.cpp:2271:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 2271 | struct IdEqE : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Event.cpp: In function ‘Event_t* Event_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Event.cpp:2390:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2390 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Event.cpp: In function ‘Event_t* Event_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Event.cpp:2406:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2406 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/ExpectedAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ExpectedAttributes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 44%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLTransforms.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/SBMLTransforms.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/SBMLTransforms.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/SBMLTransforms.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:54: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLVisitor.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/SBMLVisitor.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/SBMLVisitor.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/SBMLVisitor.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLVisitor.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLVisitor.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBMLWriter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/SBMLWriter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/SBMLWriter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/SBMLWriter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLWriter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLWriter.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLWriter.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/FunctionDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/FunctionDefinition.cpp.o -MF CMakeFiles/sbml.dir/sbml/FunctionDefinition.cpp.o.d -o CMakeFiles/sbml.dir/sbml/FunctionDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.cpp:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.cpp:1250:24: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 1250 | struct IdEqFD : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.cpp: In function ‘FunctionDefinition_t* FunctionDefinition_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.cpp:1370:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1370 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.cpp: In function ‘FunctionDefinition_t* FunctionDefinition_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.cpp:1386:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1386 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/InitialAssignment.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/InitialAssignment.cpp.o -MF CMakeFiles/sbml.dir/sbml/InitialAssignment.cpp.o.d -o CMakeFiles/sbml.dir/sbml/InitialAssignment.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/InitialAssignment.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/InitialAssignment.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/InitialAssignment.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/InitialAssignment.cpp:1145:24: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 1145 | struct IdEqIA : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/InitialAssignment.cpp: In function ‘InitialAssignment_t* InitialAssignment_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/InitialAssignment.cpp:1280:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1280 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/InitialAssignment.cpp: In function ‘InitialAssignment_t* InitialAssignment_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/InitialAssignment.cpp:1296:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1296 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBO.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/SBO.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/SBO.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/SBO.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBO.cpp /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBO.cpp:195:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 195 | struct GetSecond : public unary_function, int> | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/iomanip:42, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBO.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/ListOf.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/ListOf.cpp.o -MF CMakeFiles/sbml.dir/sbml/ListOf.cpp.o.d -o CMakeFiles/sbml.dir/sbml/ListOf.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/functional:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.cpp:86:24: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 86 | struct Delete : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.cpp:104:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 104 | struct Clone : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.cpp:482:33: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 482 | struct SetSBMLDocument : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.cpp:494:37: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 494 | struct SetParentSBMLObject : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.cpp:564:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 564 | struct Write : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/KineticLaw.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/KineticLaw.cpp.o -MF CMakeFiles/sbml.dir/sbml/KineticLaw.cpp.o.d -o CMakeFiles/sbml.dir/sbml/KineticLaw.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/KineticLaw.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/KineticLaw.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/KineticLaw.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/KineticLaw.cpp: In function ‘KineticLaw_t* KineticLaw_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/KineticLaw.cpp:2076:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2076 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/KineticLaw.cpp: In function ‘KineticLaw_t* KineticLaw_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/KineticLaw.cpp:2092:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2092 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SimpleSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/SimpleSpeciesReference.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/SimpleSpeciesReference.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/SimpleSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SimpleSpeciesReference.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SimpleSpeciesReference.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SimpleSpeciesReference.cpp:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/LocalParameter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/LocalParameter.cpp.o -MF CMakeFiles/sbml.dir/sbml/LocalParameter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/LocalParameter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/LocalParameter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/LocalParameter.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/LocalParameter.cpp:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/LocalParameter.cpp:701:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 701 | struct IdEqP : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/LocalParameter.cpp: In function ‘LocalParameter_t* LocalParameter_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/LocalParameter.cpp:837:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 837 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/LocalParameter.cpp: In function ‘LocalParameter_t* LocalParameter_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/LocalParameter.cpp:853:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 853 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/ModifierSpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/ModifierSpeciesReference.cpp.o -MF CMakeFiles/sbml.dir/sbml/ModifierSpeciesReference.cpp.o.d -o CMakeFiles/sbml.dir/sbml/ModifierSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ModifierSpeciesReference.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ModifierSpeciesReference.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ModifierSpeciesReference.cpp:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ModifierSpeciesReference.cpp: In function ‘ModifierSpeciesReference_t* ModifierSpeciesReference_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ModifierSpeciesReference.cpp:440:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 440 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ModifierSpeciesReference.cpp: In function ‘ModifierSpeciesReference_t* ModifierSpeciesReference_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ModifierSpeciesReference.cpp:456:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 456 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Species.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/Species.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/Species.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/Species.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Species.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Species.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Species.cpp:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Species.cpp:2567:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 2567 | struct IdEqS : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Species.cpp: In function ‘Species_t* Species_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Species.cpp:2683:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2683 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Species.cpp: In function ‘Species_t* Species_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Species.cpp:2699:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2699 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/SBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/SBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/SBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.h:187, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/KineticLaw.h:191, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.cpp:55: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.cpp:83:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 83 | struct DeletePluginEntity : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.cpp:92:35: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 92 | struct ClonePluginEntity : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.cpp: In member function ‘virtual void SBase::writeAttributes(XMLOutputStream&) const’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.cpp:5960:16: warning: unused variable ‘pkgCoreVersion’ [-Wunused-variable] 5960 | unsigned int pkgCoreVersion = getPackageCoreVersion(); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Parameter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Parameter.cpp.o -MF CMakeFiles/sbml.dir/sbml/Parameter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Parameter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.cpp:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.cpp:1894:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 1894 | struct IdEqP : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.cpp: In function ‘Parameter_t* Parameter_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.cpp:2012:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2012 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.cpp: In function ‘Parameter_t* Parameter_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.cpp:2028:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2028 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/SpeciesType.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/SpeciesType.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/SpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesType.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesType.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesType.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesType.cpp:762:24: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 762 | struct IdEqST : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesType.cpp: In function ‘SpeciesType_t* SpeciesType_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesType.cpp:883:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 883 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesType.cpp: In function ‘SpeciesType_t* SpeciesType_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesType.cpp:899:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 899 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Model.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Model.cpp.o -MF CMakeFiles/sbml.dir/sbml/Model.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Model.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp: In function ‘Model_t* Model_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp:7433:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 7433 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp: In function ‘Model_t* Model_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp:7449:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 7449 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp: In member function ‘Model::createConstraintUnitsData(UnitFormulaFormatter*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp:6731:32: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 4 [-Wformat-overflow=] 6731 | sprintf(newId, "constraint_%u", n); | ^~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp:6731:20: note: directive argument in the range [0, 4294967294] 6731 | sprintf(newId, "constraint_%u", n); | ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:964, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4097, from /usr/include/c++/13/string:54: In function ‘sprintf’, inlined from ‘Model::createConstraintUnitsData(UnitFormulaFormatter*)’ at /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp:6731:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 13 and 22 bytes into a destination of size 15 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp: In member function ‘Model::createEventUnitsData(UnitFormulaFormatter*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp:6948:27: warning: ‘%u’ directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=] 6948 | sprintf(newId, "event_%u", countEvents); | ^~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp:6948:20: note: directive argument in the range [0, 4294967294] 6948 | sprintf(newId, "event_%u", countEvents); | ^~~~~~~~~~ In function ‘sprintf’, inlined from ‘Model::createEventUnitsData(UnitFormulaFormatter*)’ at /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.cpp:6948:12: /usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 8 and 17 bytes into a destination of size 12 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/SpeciesReference.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/SpeciesReference.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/SpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp:1721:25: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 1721 | struct IdEqSSR : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp:1976:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1976 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp:1992:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1992 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createModifier(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp:2008:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2008 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createModifierWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp:2024:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2024 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Priority.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Priority.cpp.o -MF CMakeFiles/sbml.dir/sbml/Priority.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Priority.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Priority.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Priority.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Priority.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Priority.cpp: In function ‘Priority_t* Priority_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Priority.cpp:741:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 741 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Priority.cpp: In function ‘Priority_t* Priority_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Priority.cpp:757:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 757 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/SyntaxChecker.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/SyntaxChecker.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/SyntaxChecker.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/SyntaxChecker.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SyntaxChecker.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/RateRule.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/RateRule.cpp.o -MF CMakeFiles/sbml.dir/sbml/RateRule.cpp.o.d -o CMakeFiles/sbml.dir/sbml/RateRule.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/RateRule.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/RateRule.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/RateRule.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/RateRule.cpp: In function ‘RateRule_t* RateRule_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/RateRule.cpp:532:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 532 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/RateRule.cpp: In function ‘RateRule_t* RateRule_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/RateRule.cpp:548:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 548 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/StoichiometryMath.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/StoichiometryMath.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/StoichiometryMath.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/StoichiometryMath.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/StoichiometryMath.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/StoichiometryMath.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/StoichiometryMath.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/StoichiometryMath.cpp: In function ‘StoichiometryMath_t* StoichiometryMath_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/StoichiometryMath.cpp:647:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 647 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/StoichiometryMath.cpp: In function ‘StoichiometryMath_t* StoichiometryMath_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/StoichiometryMath.cpp:663:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 663 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Trigger.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/Trigger.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/Trigger.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/Trigger.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Trigger.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Trigger.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Trigger.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Trigger.cpp: In function ‘Trigger_t* Trigger_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Trigger.cpp:1017:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1017 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Trigger.cpp: In function ‘Trigger_t* Trigger_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Trigger.cpp:1033:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1033 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/Unit.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/Unit.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/Unit.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/Unit.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Unit.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Unit.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Unit.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Unit.cpp: In function ‘Unit_t* Unit_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Unit.cpp:2672:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2672 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Unit.cpp: In function ‘Unit_t* Unit_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Unit.cpp:2688:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2688 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 46%] Building C object src/CMakeFiles/sbml-static.dir/sbml/UnitKind.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/UnitKind.c.o -MF CMakeFiles/sbml-static.dir/sbml/UnitKind.c.o.d -o CMakeFiles/sbml-static.dir/sbml/UnitKind.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitKind.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Reaction.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Reaction.cpp.o -MF CMakeFiles/sbml.dir/sbml/Reaction.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Reaction.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Reaction.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.h:269, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Reaction.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Reaction.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Reaction.cpp: In function ‘Reaction_t* Reaction_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Reaction.cpp:2695:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2695 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Reaction.cpp: In function ‘Reaction_t* Reaction_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Reaction.cpp:2711:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2711 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Rule.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Rule.cpp.o -MF CMakeFiles/sbml.dir/sbml/Rule.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Rule.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:1676:26: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 1676 | struct IdEqRule : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAlgebraic(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:1917:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1917 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAlgebraicWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:1933:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1933 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAssignment(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:1949:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1949 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp: In function ‘Rule_t* Rule_createAssignmentWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:1965:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1965 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp: In function ‘Rule_t* Rule_createRate(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:1981:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1981 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp: In function ‘Rule_t* Rule_createRateWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.cpp:1997:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1997 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLConstructorException.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLConstructorException.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLConstructorException.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLConstructorException.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLConstructorException.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/UnitDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/UnitDefinition.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/UnitDefinition.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/UnitDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.cpp:55: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.cpp:2310:24: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 2310 | struct IdEqUD : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.cpp: In function ‘UnitDefinition_t* UnitDefinition_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.cpp:2443:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2443 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.cpp: In function ‘UnitDefinition_t* UnitDefinition_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.cpp:2459:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2459 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/DefinitionURLRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/math/DefinitionURLRegistry.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/math/DefinitionURLRegistry.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/math/DefinitionURLRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/DefinitionURLRegistry.cpp /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/DefinitionURLRegistry.cpp: In static member function ‘static int DefinitionURLRegistry::addDefinitionURL(const std::string&, int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/DefinitionURLRegistry.cpp:82:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 82 | if (getNumDefinitionURLs() == n + 1) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/DefinitionURLRegistry.cpp: In static member function ‘static std::string DefinitionURLRegistry::getDefinitionUrlByIndex(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/DefinitionURLRegistry.cpp:106:11: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 106 | if (i == index) | ~~^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTNode.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/math/ASTNode.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/math/ASTNode.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/math/ASTNode.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.cpp:46: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.cpp:345:38: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 345 | struct CloneASTPluginEntity : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.cpp:3492:39: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 3492 | struct DeleteASTPluginEntity : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLConvert.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLConvert.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLConvert.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLConvert.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLConvert.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLConvert.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLConvert.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/FormulaFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/math/FormulaFormatter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/math/FormulaFormatter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/math/FormulaFormatter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/FormulaParser.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/math/FormulaParser.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/math/FormulaParser.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/math/FormulaParser.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:185: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/FormulaTokenizer.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/math/FormulaTokenizer.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/math/FormulaTokenizer.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/math/FormulaTokenizer.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaTokenizer.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLDocument.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLDocument.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLDocument.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLDocument.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLValidator.h:84, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLInternalValidator.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_create()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp:2312:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2312 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_createWithLevelAndVersion(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp:2328:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2328 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp: In function ‘SBMLDocument_t* SBMLDocument_createWithSBMLNamespaces(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.cpp:2344:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2344 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 47%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLError.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLError.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLError.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLError.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegistry.h:59, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/L3FormulaFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/math/L3FormulaFormatter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/math/L3FormulaFormatter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/math/L3FormulaFormatter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/L3FormulaFormatter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/L3FormulaFormatter.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/L3FormulaFormatter.cpp:47: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLErrorLog.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLErrorLog.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLErrorLog.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLErrorLog.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.cpp /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.cpp:93:24: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 93 | struct Delete : public unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/functional:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLErrorLog.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLNamespaces.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLNamespaces.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegistry.h:59, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/L3ParserSettings.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/math/L3ParserSettings.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/math/L3ParserSettings.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/math/L3ParserSettings.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/L3ParserSettings.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/L3ParserSettings.h:442, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/L3ParserSettings.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:61: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLReader.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLReader.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLReader.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLReader.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLReader.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLReader.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLReader.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/L3Parser.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/math/L3Parser.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/math/L3Parser.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/math/L3Parser.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/L3Parser.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from L3Parser.ypp:86: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLTypeCodes.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLTypeCodes.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLTypeCodes.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLTypeCodes.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypeCodes.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypeCodes.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypeCodes.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/units/FormulaUnitsData.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/units/FormulaUnitsData.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/units/FormulaUnitsData.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/units/FormulaUnitsData.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/FormulaUnitsData.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/FormulaUnitsData.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLTransforms.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLTransforms.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLTransforms.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLTransforms.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:54: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLVisitor.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLVisitor.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLVisitor.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLVisitor.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLVisitor.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLVisitor.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/MathML.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/math/MathML.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/math/MathML.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/math/MathML.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/MathML.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/MathML.cpp:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/MathML.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/MathML.cpp: In function ‘bool isValidCSymbol(SBMLNamespaces*, ASTNodeType_t)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/MathML.cpp:404:18: warning: unused variable ‘version’ [-Wunused-variable] 404 | unsigned int version = sbmlns->getVersion(); | ^~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/MathML.cpp: In function ‘void setTypeCI(ASTNode&, const XMLToken&, XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/MathML.cpp:424:16: warning: unused variable ‘n’ [-Wunused-variable] 424 | unsigned int n = DefinitionURLRegistry::getInstance().getNumDefinitionURLs(); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/MathML.cpp: In function ‘ASTNode* readMathML(XMLInputStream&, std::string, bool)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/MathML.cpp:2174:21: warning: unused variable ‘name’ [-Wunused-variable] 2174 | const string& name = element1.getName(); | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBMLWriter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBMLWriter.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBMLWriter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBMLWriter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLWriter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLWriter.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLWriter.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/units/UnitKindList.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common 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'/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 48%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/units/UnitFormulaFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/units/UnitFormulaFormatter.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/units/UnitFormulaFormatter.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/units/UnitFormulaFormatter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:270: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/ElementFilter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT 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[-Wdeprecated-declarations] 195 | struct GetSecond : public unary_function, int> | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/iomanip:42, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBO.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/IdFilter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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src/CMakeFiles/sbml.dir/sbml/SimpleSpeciesReference.cpp.o -MF CMakeFiles/sbml.dir/sbml/SimpleSpeciesReference.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SimpleSpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SimpleSpeciesReference.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SimpleSpeciesReference.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SimpleSpeciesReference.cpp:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/PrefixTransformer.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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src/CMakeFiles/sbml-static.dir/sbml/util/PrefixTransformer.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/util/PrefixTransformer.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/util/PrefixTransformer.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/PrefixTransformer.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/util/util.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src 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'/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/IdentifierConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/IdentifierConsistencyValidator.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:270: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Species.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Species.cpp.o -MF CMakeFiles/sbml.dir/sbml/Species.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Species.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Species.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Species.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Species.cpp:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Species.cpp:2567:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 2567 | struct IdEqS : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Species.cpp: In function ‘Species_t* Species_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Species.cpp:2683:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2683 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Species.cpp: In function ‘Species_t* Species_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Species.cpp:2699:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2699 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 49%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/SBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.h:187, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/KineticLaw.h:191, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.cpp:55: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.cpp:83:36: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 83 | struct DeletePluginEntity : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.cpp:92:35: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 92 | struct ClonePluginEntity : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.cpp: In member function ‘virtual void SBase::writeAttributes(XMLOutputStream&) const’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.cpp:5960:16: warning: unused variable ‘pkgCoreVersion’ [-Wunused-variable] 5960 | unsigned int pkgCoreVersion = getPackageCoreVersion(); | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/InternalConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/InternalConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/InternalConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/InternalConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/InternalConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/InternalConsistencyValidator.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:270: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/ConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/ConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/ConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/ConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/ConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/ConsistencyValidator.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:270: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SpeciesType.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SpeciesType.cpp.o -MF CMakeFiles/sbml.dir/sbml/SpeciesType.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SpeciesType.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesType.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesType.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesType.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesType.cpp:762:24: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 762 | struct IdEqST : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesType.cpp: In function ‘SpeciesType_t* SpeciesType_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesType.cpp:883:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 883 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesType.cpp: In function ‘SpeciesType_t* SpeciesType_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesType.cpp:899:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 899 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SpeciesReference.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SpeciesReference.cpp.o -MF CMakeFiles/sbml.dir/sbml/SpeciesReference.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SpeciesReference.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp:1721:25: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 1721 | struct IdEqSSR : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp:1976:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1976 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp:1992:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1992 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createModifier(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp:2008:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2008 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp: In function ‘SpeciesReference_t* SpeciesReference_createModifierWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.cpp:2024:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2024 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/SyntaxChecker.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/SyntaxChecker.cpp.o -MF CMakeFiles/sbml.dir/sbml/SyntaxChecker.cpp.o.d -o CMakeFiles/sbml.dir/sbml/SyntaxChecker.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SyntaxChecker.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/StoichiometryMath.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/StoichiometryMath.cpp.o -MF CMakeFiles/sbml.dir/sbml/StoichiometryMath.cpp.o.d -o CMakeFiles/sbml.dir/sbml/StoichiometryMath.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/StoichiometryMath.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/StoichiometryMath.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/StoichiometryMath.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/StoichiometryMath.cpp: In function ‘StoichiometryMath_t* StoichiometryMath_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/StoichiometryMath.cpp:647:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 647 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/StoichiometryMath.cpp: In function ‘StoichiometryMath_t* StoichiometryMath_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/StoichiometryMath.cpp:663:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 663 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/L1CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/L1CompatibilityValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/L1CompatibilityValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/L1CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L1CompatibilityValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.h:150, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.h:191, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/L1CompatibilityConstraints.cpp:46, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L1CompatibilityValidator.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/Validator.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L1CompatibilityValidator.h:51, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L1CompatibilityValidator.cpp:46: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Trigger.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Trigger.cpp.o -MF CMakeFiles/sbml.dir/sbml/Trigger.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Trigger.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Trigger.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Trigger.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Trigger.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Trigger.cpp: In function ‘Trigger_t* Trigger_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Trigger.cpp:1017:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1017 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Trigger.cpp: In function ‘Trigger_t* Trigger_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Trigger.cpp:1033:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 1033 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/L2v1CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/L2v1CompatibilityValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/L2v1CompatibilityValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/L2v1CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v1CompatibilityValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.h:150, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.h:191, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:46, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v1CompatibilityValidator.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/Validator.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v1CompatibilityValidator.h:51, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v1CompatibilityValidator.cpp:46: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 50%] Building CXX object src/CMakeFiles/sbml.dir/sbml/Unit.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/Unit.cpp.o -MF CMakeFiles/sbml.dir/sbml/Unit.cpp.o.d -o CMakeFiles/sbml.dir/sbml/Unit.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Unit.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Unit.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.h:160, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Unit.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Unit.cpp: In function ‘Unit_t* Unit_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Unit.cpp:2672:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2672 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Unit.cpp: In function ‘Unit_t* Unit_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Unit.cpp:2688:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2688 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 51%] Building C object src/CMakeFiles/sbml.dir/sbml/UnitKind.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints 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'/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 51%] Building CXX object src/CMakeFiles/sbml.dir/sbml/UnitDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/UnitDefinition.cpp.o -MF CMakeFiles/sbml.dir/sbml/UnitDefinition.cpp.o.d -o CMakeFiles/sbml.dir/sbml/UnitDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.cpp:55: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.cpp:2310:24: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 2310 | struct IdEqUD : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.cpp: In function ‘UnitDefinition_t* UnitDefinition_create(unsigned int, unsigned int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.cpp:2443:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2443 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.cpp: In function ‘UnitDefinition_t* UnitDefinition_createWithNS(SBMLNamespaces_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.cpp:2459:10: warning: catching polymorphic type ‘class SBMLConstructorException’ by value [-Wcatch-value=] 2459 | catch (SBMLConstructorException) | ^~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 51%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/L2v2CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/L2v2CompatibilityValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/L2v2CompatibilityValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/L2v2CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v2CompatibilityValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.h:150, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.h:191, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:46, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v2CompatibilityValidator.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/Validator.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v2CompatibilityValidator.h:51, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v2CompatibilityValidator.cpp:46: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/DefinitionURLRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/math/DefinitionURLRegistry.cpp.o -MF CMakeFiles/sbml.dir/sbml/math/DefinitionURLRegistry.cpp.o.d -o CMakeFiles/sbml.dir/sbml/math/DefinitionURLRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/DefinitionURLRegistry.cpp /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/DefinitionURLRegistry.cpp: In static member function ‘static int DefinitionURLRegistry::addDefinitionURL(const std::string&, int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/DefinitionURLRegistry.cpp:82:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 82 | if (getNumDefinitionURLs() == n + 1) | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/DefinitionURLRegistry.cpp: In static member function ‘static std::string DefinitionURLRegistry::getDefinitionUrlByIndex(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/DefinitionURLRegistry.cpp:106:11: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 106 | if (i == index) | ~~^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 51%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/L2v3CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/L2v3CompatibilityValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/L2v3CompatibilityValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/L2v3CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v3CompatibilityValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.h:150, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.h:191, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:46, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v3CompatibilityValidator.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/Validator.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v3CompatibilityValidator.h:51, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v3CompatibilityValidator.cpp:46: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 51%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/ASTNode.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/math/ASTNode.cpp.o -MF CMakeFiles/sbml.dir/sbml/math/ASTNode.cpp.o.d -o CMakeFiles/sbml.dir/sbml/math/ASTNode.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.cpp:46: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.cpp:345:38: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 345 | struct CloneASTPluginEntity : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.cpp:3492:39: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 3492 | struct DeleteASTPluginEntity : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/FormulaFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/math/FormulaFormatter.cpp.o -MF CMakeFiles/sbml.dir/sbml/math/FormulaFormatter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/math/FormulaFormatter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/FormulaTokenizer.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension 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'/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/FormulaParser.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/math/FormulaParser.cpp.o -MF CMakeFiles/sbml.dir/sbml/math/FormulaParser.cpp.o.d -o CMakeFiles/sbml.dir/sbml/math/FormulaParser.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:185: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/L3FormulaFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/math/L3FormulaFormatter.cpp.o -MF CMakeFiles/sbml.dir/sbml/math/L3FormulaFormatter.cpp.o.d -o CMakeFiles/sbml.dir/sbml/math/L3FormulaFormatter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/L3FormulaFormatter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/L3FormulaFormatter.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/L3FormulaFormatter.cpp:47: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/L2v4CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/L2v4CompatibilityValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/L2v4CompatibilityValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/L2v4CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v4CompatibilityValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.h:150, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.h:191, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:46, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v4CompatibilityValidator.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/Validator.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v4CompatibilityValidator.h:51, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v4CompatibilityValidator.cpp:46: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/L3v1CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/L3v1CompatibilityValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/L3v1CompatibilityValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/L3v1CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L3v1CompatibilityValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:47, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L3v1CompatibilityValidator.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/Validator.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L3v1CompatibilityValidator.h:51, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L3v1CompatibilityValidator.cpp:46: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/MathMLConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/MathMLConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/MathMLConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/MathMLConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/MathMLConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/MathMLConsistencyValidator.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:270: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/L3v2CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/L3v2CompatibilityValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/L3v2CompatibilityValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/L3v2CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L3v2CompatibilityValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/L3v2CompatibilityConstraints.cpp:47, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L3v2CompatibilityValidator.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/Validator.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L3v2CompatibilityValidator.h:51, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L3v2CompatibilityValidator.cpp:46: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/L3ParserSettings.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/math/L3ParserSettings.cpp.o -MF CMakeFiles/sbml.dir/sbml/math/L3ParserSettings.cpp.o.d -o CMakeFiles/sbml.dir/sbml/math/L3ParserSettings.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/L3ParserSettings.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/L3ParserSettings.h:442, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/L3ParserSettings.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:61: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/L3Parser.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from L3Parser.ypp:86: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/OverdeterminedValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common 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-mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/OverdeterminedValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/OverdeterminedValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/OverdeterminedValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/OverdeterminedValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/OverdeterminedValidator.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:270: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/ModelingPracticeValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/ModelingPracticeValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/ModelingPracticeValidator.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:270: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/units/FormulaUnitsData.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/units/FormulaUnitsData.cpp.o -MF CMakeFiles/sbml.dir/sbml/units/FormulaUnitsData.cpp.o.d -o CMakeFiles/sbml.dir/sbml/units/FormulaUnitsData.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/FormulaUnitsData.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/FormulaUnitsData.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/SBMLInternalValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/SBMLInternalValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/SBMLInternalValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/SBMLInternalValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLInternalValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLValidator.h:84, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLInternalValidator.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLInternalValidator.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLInternalValidator.h:71: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/SBMLExternalValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/SBMLExternalValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/SBMLExternalValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/SBMLExternalValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLExternalValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLValidator.h:84, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLExternalValidator.h:52, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLExternalValidator.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLExternalValidator.h:51: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/math/MathML.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/math/MathML.cpp.o -MF CMakeFiles/sbml.dir/sbml/math/MathML.cpp.o.d -o CMakeFiles/sbml.dir/sbml/math/MathML.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/MathML.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/MathML.cpp:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLToken.h:126, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/MathML.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/MathML.cpp: In function ‘bool isValidCSymbol(SBMLNamespaces*, ASTNodeType_t)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/MathML.cpp:404:18: warning: unused variable ‘version’ [-Wunused-variable] 404 | unsigned int version = sbmlns->getVersion(); | ^~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/MathML.cpp: In function ‘void setTypeCI(ASTNode&, const XMLToken&, XMLInputStream&)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/MathML.cpp:424:16: warning: unused variable ‘n’ [-Wunused-variable] 424 | unsigned int n = DefinitionURLRegistry::getInstance().getNumDefinitionURLs(); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/MathML.cpp: In function ‘ASTNode* readMathML(XMLInputStream&, std::string, bool)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/MathML.cpp:2174:21: warning: unused variable ‘name’ [-Wunused-variable] 2174 | const string& name = element1.getName(); | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/SBMLValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/SBMLValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/SBMLValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/SBMLValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLValidator.h:84, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLValidator.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLValidator.h:82: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 52%] Building CXX object src/CMakeFiles/sbml.dir/sbml/units/UnitKindList.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:270: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 53%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/ElementFilter.cpp.o cd 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBOConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBOConsistencyValidator.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:270: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 54%] Building CXX object src/CMakeFiles/sbml.dir/sbml/util/util.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/util/util.cpp.o -MF CMakeFiles/sbml.dir/sbml/util/util.cpp.o.d -o CMakeFiles/sbml.dir/sbml/util/util.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 53%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/StrictUnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common 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-mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/StrictUnitConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/StrictUnitConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/StrictUnitConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/StrictUnitConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/StrictUnitConsistencyValidator.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:270: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 55%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/VConstraint.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:56: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 55%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/IdentifierConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/IdentifierConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/IdentifierConsistencyValidator.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:270: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 54%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/UnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common 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-mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/UnitConsistencyValidator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/UnitConsistencyValidator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/UnitConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/UnitConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/UnitConsistencyValidator.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:270: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 55%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/InternalConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/InternalConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/InternalConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/InternalConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/InternalConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/InternalConsistencyValidator.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:270: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 55%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/Validator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/Validator.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/Validator.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/Validator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/Validator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/FormulaUnitsData.h:88, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/Validator.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/functional:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/Validator.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/Validator.cpp:86:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 86 | struct Apply : public unary_function*, void> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 54%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/ConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/ConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/ConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/ConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/ConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/ConsistencyValidator.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:270: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 55%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/ArgumentsUnitsCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util 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CMakeFiles/sbml-static.dir/sbml/validator/constraints/ArgumentsUnitsCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/ArgumentsUnitsCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/ArgumentsUnitsCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/ArgumentsUnitsCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 55%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 55%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/AssignmentRuleOrdering.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/AssignmentRuleOrdering.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/AssignmentRuleOrdering.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/AssignmentRuleOrdering.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/AssignmentRuleOrdering.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/AssignmentRuleOrdering.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 55%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L1CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/L1CompatibilityValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/L1CompatibilityValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/L1CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L1CompatibilityValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.h:150, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.h:191, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/L1CompatibilityConstraints.cpp:46, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L1CompatibilityValidator.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/Validator.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L1CompatibilityValidator.h:51, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L1CompatibilityValidator.cpp:46: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 55%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/AssignmentCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/AssignmentCycles.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/AssignmentCycles.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/AssignmentCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/AssignmentCycles.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/AssignmentCycles.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 55%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L2v1CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/L2v1CompatibilityValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/L2v1CompatibilityValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/L2v1CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v1CompatibilityValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.h:150, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.h:191, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/L2v1CompatibilityConstraints.cpp:46, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v1CompatibilityValidator.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/Validator.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v1CompatibilityValidator.h:51, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v1CompatibilityValidator.cpp:46: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 55%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/CiElementMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/CiElementMathCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/CiElementMathCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/CiElementMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/CiElementMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/CiElementMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 55%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/CiElementNot0DComp.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/CiElementNot0DComp.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/CiElementNot0DComp.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/CiElementNot0DComp.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/CiElementNot0DComp.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/CiElementNot0DComp.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 55%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/CompartmentOutsideCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/CompartmentOutsideCycles.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/CompartmentOutsideCycles.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/CompartmentOutsideCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/CompartmentOutsideCycles.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/CompartmentOutsideCycles.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/CompartmentOutsideCycles.cpp:126:31: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 126 | struct CycleContains : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 55%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common 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-mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 55%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L2v2CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/L2v2CompatibilityValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/L2v2CompatibilityValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/L2v2CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v2CompatibilityValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.h:150, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.h:191, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/L2v2CompatibilityConstraints.cpp:46, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v2CompatibilityValidator.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/Validator.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v2CompatibilityValidator.h:51, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v2CompatibilityValidator.cpp:46: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 55%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/EqualityArgsMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/EqualityArgsMathCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/EqualityArgsMathCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/EqualityArgsMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/EqualityArgsMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/EqualityArgsMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 55%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L2v3CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/L2v3CompatibilityValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/L2v3CompatibilityValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/L2v3CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v3CompatibilityValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.h:150, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.h:191, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/L2v3CompatibilityConstraints.cpp:46, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v3CompatibilityValidator.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/Validator.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v3CompatibilityValidator.h:51, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v3CompatibilityValidator.cpp:46: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/ExponentUnitsCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/ExponentUnitsCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/ExponentUnitsCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/ExponentUnitsCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/ExponentUnitsCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/ExponentUnitsCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionApplyMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionApplyMathCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionApplyMathCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionApplyMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/FunctionApplyMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/FunctionApplyMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionDefinitionVars.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionDefinitionVars.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionDefinitionVars.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionDefinitionVars.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/FunctionDefinitionVars.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/FunctionDefinitionVars.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionDefinitionRecursion.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints 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CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionDefinitionRecursion.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/FunctionDefinitionRecursion.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/FunctionDefinitionRecursion.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 56%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L3v1CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/L3v1CompatibilityValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/L3v1CompatibilityValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/L3v1CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L3v1CompatibilityValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/L3v1CompatibilityConstraints.cpp:47, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L3v1CompatibilityValidator.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/Validator.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L3v1CompatibilityValidator.h:51, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L3v1CompatibilityValidator.cpp:46: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 56%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L2v4CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v4CompatibilityValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.h:150, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/AssignmentRule.h:191, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/L2v4CompatibilityConstraints.cpp:46, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v4CompatibilityValidator.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/Validator.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v4CompatibilityValidator.h:51, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L2v4CompatibilityValidator.cpp:46: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionReferredToExists.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionReferredToExists.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionReferredToExists.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/FunctionReferredToExists.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/FunctionReferredToExists.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/FunctionReferredToExists.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 56%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/MathMLConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/MathMLConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/MathMLConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/MathMLConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/MathMLConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/MathMLConsistencyValidator.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:270: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 56%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/L3v2CompatibilityValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/L3v2CompatibilityValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/L3v2CompatibilityValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/L3v2CompatibilityValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L3v2CompatibilityValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/L3v2CompatibilityConstraints.cpp:47, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L3v2CompatibilityValidator.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/Validator.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L3v2CompatibilityValidator.h:51, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/L3v2CompatibilityValidator.cpp:46: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/IdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/IdBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/IdBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/IdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/IdBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/IdBase.h:52, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/IdBase.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/IdBase.h:51: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/IdNameNewOnSBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/IdNameNewOnSBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/IdNameNewOnSBase.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 56%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/OverdeterminedValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/OverdeterminedValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/OverdeterminedValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/OverdeterminedValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/OverdeterminedValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/OverdeterminedValidator.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:270: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 56%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/ModelingPracticeValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/ModelingPracticeValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/ModelingPracticeValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/ModelingPracticeValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/ModelingPracticeValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/ModelingPracticeValidator.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:270: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/KineticLawUnitsCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/KineticLawUnitsCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/KineticLawUnitsCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 56%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/KineticLawVars.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/KineticLawVars.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/KineticLawVars.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/KineticLawVars.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/KineticLawVars.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/KineticLawVars.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 57%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/SBMLInternalValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/SBMLInternalValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/SBMLInternalValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/SBMLInternalValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLInternalValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLValidator.h:84, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLInternalValidator.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLInternalValidator.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLInternalValidator.h:71: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 57%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/SBMLExternalValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension 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src/CMakeFiles/sbml.dir/sbml/validator/SBMLExternalValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/SBMLExternalValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/SBMLExternalValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLExternalValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLValidator.h:84, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLExternalValidator.h:52, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLExternalValidator.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLExternalValidator.h:51: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 57%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/LambdaMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/LambdaMathCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/LambdaMathCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/LambdaMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/LambdaMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/LambdaMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 57%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/LocalParameterMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/LocalParameterMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/LocalParameterMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 57%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/SBMLValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/SBMLValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/SBMLValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/SBMLValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLValidator.h:84, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLValidator.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNamespaces.h:79, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLNamespaces.h:108, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBMLValidator.h:82: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 58%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 58%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/LogicalArgsMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/LogicalArgsMathCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/LogicalArgsMathCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/LogicalArgsMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/LogicalArgsMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/LogicalArgsMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 58%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/MathMLBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/MathMLBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/MathMLBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/MathMLBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/MathMLBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/MathMLBase.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 58%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/ModelUnitsDangling.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/ModelUnitsDangling.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/ModelUnitsDangling.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/ModelUnitsDangling.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/ModelUnitsDangling.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/ModelUnitsDangling.h:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/ModelUnitsDangling.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/ModelUnitsDangling.h:51: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 57%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/SBOConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/SBOConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/SBOConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/SBOConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBOConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/SBOConsistencyValidator.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:270: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 58%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/NumberArgsMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator 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CMakeFiles/sbml-static.dir/sbml/validator/constraints/NumberArgsMathCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/NumberArgsMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/NumberArgsMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/NumberArgsMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 58%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/NumericArgsMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/NumericArgsMathCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/NumericArgsMathCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/NumericArgsMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/NumericArgsMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/NumericArgsMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 58%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/StrictUnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/StrictUnitConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/StrictUnitConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/StrictUnitConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/StrictUnitConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/StrictUnitConsistencyValidator.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:270: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 58%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/NumericReturnMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/NumericReturnMathCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/NumericReturnMathCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/NumericReturnMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/NumericReturnMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/NumericReturnMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 58%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/VConstraint.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/VConstraint.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/VConstraint.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/VConstraint.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:56: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 58%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/PieceBooleanMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/PieceBooleanMathCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/PieceBooleanMathCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/PieceBooleanMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/PieceBooleanMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/PieceBooleanMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 58%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/OverDeterminedCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension 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-mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/OverDeterminedCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/OverDeterminedCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/OverDeterminedCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/OverDeterminedCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/OverDeterminedCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 58%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/PiecewiseValueMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints 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CMakeFiles/sbml-static.dir/sbml/validator/constraints/PiecewiseValueMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/PiecewiseValueMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 58%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/UnitConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/UnitConsistencyValidator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/UnitConsistencyValidator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/UnitConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/UnitConsistencyValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/UnitConsistencyValidator.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:270: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 58%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/Validator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator 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-mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/Validator.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/Validator.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/Validator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/Validator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/FormulaUnitsData.h:88, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/Validator.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/functional:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/Validator.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/Validator.cpp:86:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 86 | struct Apply : public unary_function*, void> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 58%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/PowerUnitsCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src 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CMakeFiles/sbml-static.dir/sbml/validator/constraints/PowerUnitsCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/PowerUnitsCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/PowerUnitsCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/PowerUnitsCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 58%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/RateOfAssignmentMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/RateOfAssignmentMathCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/RateOfAssignmentMathCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/RateOfAssignmentMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/RateOfAssignmentMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/RateOfAssignmentMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 58%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/ArgumentsUnitsCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/ArgumentsUnitsCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/ArgumentsUnitsCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/ArgumentsUnitsCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/ArgumentsUnitsCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/ArgumentsUnitsCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 58%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml 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src/CMakeFiles/sbml.dir/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/ArgumentsUnitsCheckWarnings.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 59%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 59%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 59%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentRuleOrdering.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentRuleOrdering.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentRuleOrdering.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentRuleOrdering.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/AssignmentRuleOrdering.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/AssignmentRuleOrdering.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 59%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/ReportEmptyListOf.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util 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CMakeFiles/sbml-static.dir/sbml/validator/constraints/ReportEmptyListOf.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/ReportEmptyListOf.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/ReportEmptyListOf.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/ReportEmptyListOf.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 59%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentCycles.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentCycles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/AssignmentCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/AssignmentCycles.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/AssignmentCycles.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 59%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/CiElementMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/CiElementMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/CiElementMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/CiElementMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/CiElementMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/CiElementMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 59%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/SpeciesReactionOrRule.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/SpeciesReactionOrRule.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/SpeciesReactionOrRule.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/SpeciesReactionOrRule.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/SpeciesReactionOrRule.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/SpeciesReactionOrRule.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 59%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/RateOfCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/RateOfCycles.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/RateOfCycles.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/RateOfCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/RateOfCycles.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/RateOfCycles.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 60%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/CiElementNot0DComp.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/CiElementNot0DComp.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/CiElementNot0DComp.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/CiElementNot0DComp.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/CiElementNot0DComp.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/CiElementNot0DComp.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 60%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/StoichiometryMathVars.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/StoichiometryMathVars.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/StoichiometryMathVars.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/StoichiometryMathVars.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/StoichiometryMathVars.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/StoichiometryMathVars.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 60%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/CompartmentOutsideCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common 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-c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/CompartmentOutsideCycles.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/CompartmentOutsideCycles.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/CompartmentOutsideCycles.cpp:126:31: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 126 | struct CycleContains : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 60%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator 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-o CMakeFiles/sbml.dir/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/DuplicateTopLevelAnnotation.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 60%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueIdBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/IdBase.h:52, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueIdBase.h:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueIdBase.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueIdBase.cpp:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 60%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints 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CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 60%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/EqualityArgsMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/EqualityArgsMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/EqualityArgsMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/EqualityArgsMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/EqualityArgsMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/EqualityArgsMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 60%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 60%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/ExponentUnitsCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml 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src/CMakeFiles/sbml.dir/sbml/validator/constraints/ExponentUnitsCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/ExponentUnitsCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/ExponentUnitsCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/ExponentUnitsCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/ExponentUnitsCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 60%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueIdsInModel.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueIdsInModel.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueIdsInModel.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 60%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionApplyMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionApplyMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionApplyMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionApplyMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/FunctionApplyMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/FunctionApplyMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 60%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueMetaId.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension 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-mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueMetaId.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueMetaId.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueMetaId.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueMetaId.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueMetaId.h:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueMetaId.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueMetaId.h:51: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 60%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 60%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionDefinitionRecursion.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/FunctionDefinitionRecursion.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/FunctionDefinitionRecursion.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 60%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionDefinitionVars.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionDefinitionVars.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionDefinitionVars.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionDefinitionVars.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/FunctionDefinitionVars.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/FunctionDefinitionVars.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 60%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension 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-mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 61%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src 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CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 61%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/FunctionNoArgsMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 61%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionReferredToExists.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionReferredToExists.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionReferredToExists.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/FunctionReferredToExists.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/FunctionReferredToExists.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/FunctionReferredToExists.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 61%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml 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src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 61%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 61%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/IdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/IdBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/IdBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/IdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/IdBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/IdBase.h:52, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/IdBase.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/IdBase.h:51: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 61%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInRules.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInRules.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInRules.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UniqueVarsInRules.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueVarsInRules.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueVarsInRules.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 61%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/IdNameNewOnSBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/IdNameNewOnSBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/IdNameNewOnSBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/IdNameNewOnSBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/IdNameNewOnSBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/IdNameNewOnSBase.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 61%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UnitsBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/UnitsBase.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/validator/constraints/UnitsBase.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/validator/constraints/UnitsBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UnitsBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UnitsBase.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 62%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/CompressCommon.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/compress/CompressCommon.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/compress/CompressCommon.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/compress/CompressCommon.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/compress/CompressCommon.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 62%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/KineticLawUnitsCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common 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-mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/KineticLawUnitsCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/KineticLawUnitsCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/KineticLawUnitsCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/KineticLawUnitsCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/KineticLawUnitsCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 62%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/validator/constraints/ValidCnUnitsValue.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/ValidCnUnitsValue.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/ValidCnUnitsValue.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 62%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/KineticLawVars.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/KineticLawVars.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/KineticLawVars.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/KineticLawVars.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/KineticLawVars.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/KineticLawVars.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 62%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/InputDecompressor.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/LambdaMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/LambdaMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/LambdaMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/LambdaMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/LambdaMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 62%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/zfstream.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/compress/zfstream.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/compress/zfstream.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/compress/zfstream.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/compress/zfstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 62%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/LocalParameterMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common 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-mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/LocalParameterMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/LocalParameterMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/LocalParameterMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/LocalParameterMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/LocalParameterMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 62%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/compress/zipfstream.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/LocalParameterShadowsIdInModel.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 63%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/LogicalArgsMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS 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-mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/LogicalArgsMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/LogicalArgsMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/LogicalArgsMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/LogicalArgsMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/LogicalArgsMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 63%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLError.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml 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Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 63%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/xml/XMLAttributes.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/xml/XMLAttributes.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/xml/XMLAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 63%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/ModelUnitsDangling.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/ModelUnitsDangling.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/ModelUnitsDangling.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/ModelUnitsDangling.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/ModelUnitsDangling.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/ModelUnitsDangling.h:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/ModelUnitsDangling.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/ModelUnitsDangling.h:51: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 63%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/MathMLBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/MathMLBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/MathMLBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/MathMLBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/MathMLBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/MathMLBase.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 63%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLLogOverride.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util 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CMakeFiles/sbml-static.dir/sbml/xml/XMLLogOverride.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/xml/XMLLogOverride.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLLogOverride.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 63%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLErrorLog.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLErrorLog.cpp:103:24: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 103 | struct Delete : public unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/functional:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLErrorLog.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 63%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLHandler.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB 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cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/NumberArgsMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/NumberArgsMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/NumberArgsMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/NumberArgsMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/NumberArgsMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 63%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/NumericArgsMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml 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src/CMakeFiles/sbml.dir/sbml/validator/constraints/NumericArgsMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/NumericArgsMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/NumericArgsMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/NumericArgsMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/NumericArgsMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 63%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common 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'/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 63%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/NumericReturnMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/NumericReturnMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/NumericReturnMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/NumericReturnMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/NumericReturnMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/NumericReturnMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 63%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLNode.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/xml/XMLNode.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/xml/XMLNode.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/xml/XMLNode.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 65%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/PieceBooleanMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension 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src/CMakeFiles/sbml.dir/sbml/validator/constraints/PieceBooleanMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/PieceBooleanMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/PieceBooleanMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/PieceBooleanMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/PieceBooleanMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 65%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLParser.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common 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Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 64%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLOutputStream.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/CMakeFiles/sbml-static.dir/sbml/xml/XMLOutputStream.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/xml/XMLOutputStream.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/xml/XMLOutputStream.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLOutputStream.cpp /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLOutputStream.cpp: In member function ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLOutputStream.cpp:997:44: warning: ‘%02d’ directive output may be truncated writing between 2 and 11 bytes into a region of size between 5 and 15 [-Wformat-truncation=] 997 | snprintf(formattedDateAndTime, 17, "%d-%02d-%02d %02d:%02d", | ^~~~ In member function ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’, inlined from ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’ at /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLOutputStream.cpp:973:1: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLOutputStream.cpp:997:40: note: directive argument in the range [-2147483647, 2147483647] 997 | snprintf(formattedDateAndTime, 17, "%d-%02d-%02d %02d:%02d", | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:964, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4097, from /usr/include/c++/13/string:54, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLOutputStream.cpp:44: In function ‘snprintf’, inlined from ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’ at /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLOutputStream.cpp:997:13, inlined from ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’ at /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLOutputStream.cpp:973:1: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 14 and 60 bytes into a destination of size 17 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 63%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/OverDeterminedCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/OverDeterminedCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/OverDeterminedCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/OverDeterminedCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/OverDeterminedCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/OverDeterminedCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 65%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/PiecewiseValueMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/PiecewiseValueMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/PiecewiseValueMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/PiecewiseValueMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/PiecewiseValueMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/PiecewiseValueMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 65%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLToken.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH 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make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 65%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/XMLTriple.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfAssignmentMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfAssignmentMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfAssignmentMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/RateOfAssignmentMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/RateOfAssignmentMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 65%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/LibXMLAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH 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src/CMakeFiles/sbml-static.dir/sbml/xml/LibXMLAttributes.cpp.o -MF CMakeFiles/sbml-static.dir/sbml/xml/LibXMLAttributes.cpp.o.d -o CMakeFiles/sbml-static.dir/sbml/xml/LibXMLAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/LibXMLAttributes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 65%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/PowerUnitsCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src 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CMakeFiles/sbml.dir/sbml/validator/constraints/PowerUnitsCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/PowerUnitsCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/PowerUnitsCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 65%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/xml/LibXMLHandler.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/RateOfCiTargetMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 65%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/RateOfCompartmentMathCheck.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 65%] Linking CXX static library libsbml-static.a cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/cmake -P CMakeFiles/sbml-static.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/sbml-static.dir/link.txt --verbose=1 /usr/bin/ar qc libsbml-static.a 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CMakeFiles/sbml.dir/sbml/validator/constraints/SpeciesReactionOrRule.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/SpeciesReactionOrRule.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/SpeciesReactionOrRule.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/SpeciesReactionOrRule.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 65%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/ReportEmptyListOf.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/ReportEmptyListOf.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/ReportEmptyListOf.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/ReportEmptyListOf.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/ReportEmptyListOf.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/ReportEmptyListOf.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 65%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCycles.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCycles.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCycles.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/RateOfCycles.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/RateOfCycles.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/RateOfCycles.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 65%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestCheckConsistency.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestCheckConsistency.cpp.o -MF CMakeFiles/test_comp_extensions.dir/TestCheckConsistency.cpp.o.d -o CMakeFiles/test_comp_extensions.dir/TestCheckConsistency.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/test/TestCheckConsistency.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/test/TestCheckConsistency.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/test/TestCheckConsistency.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 65%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/StoichiometryMathVars.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/StoichiometryMathVars.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/StoichiometryMathVars.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/StoichiometryMathVars.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/StoichiometryMathVars.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/StoichiometryMathVars.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 65%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdBase.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdBase.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueIdBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/IdBase.h:52, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueIdBase.h:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueIdBase.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLAttributes.h:243, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotationParser.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/RDFAnnotation.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBase.h:153, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueIdBase.cpp:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 65%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueIdsForUnitDefinitions.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 65%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 66%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsInModel.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsInModel.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsInModel.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsInModel.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueIdsInModel.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueIdsInModel.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 65%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o -MF CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o.d -o CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/test/TestExtensionObjects.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common/CompExtensionTypes.h:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/test/TestExtensionObjects.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/test/TestExtensionObjects.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 66%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueMetaId.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueMetaId.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueMetaId.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueMetaId.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueMetaId.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/UnitDefinition.h:273, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/UnitFormulaFormatter.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/VConstraint.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueMetaId.h:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueMetaId.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueMetaId.h:51: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 66%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 66%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 67%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 67%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 67%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o -MF CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o.d -o CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/test/TestMultipleNamespaces.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common/CompExtensionTypes.h:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/test/TestMultipleNamespaces.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/test/TestMultipleNamespaces.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/test/TestMultipleNamespaces.cpp:40: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:62: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Smake[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' ource/src/sbml/packages/layout/common/LayoutExtensionTypes.h:63: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 67%] Building CXX object src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/TestRunner.c.o -MF CMakeFiles/test_comp_extensions.dir/TestRunner.c.o.d -o CMakeFiles/test_comp_extensions.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 67%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 67%] Building CXX object src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInRules.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator 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-mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInRules.cpp.o -MF CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInRules.cpp.o.d -o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInRules.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueVarsInRules.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UniqueVarsInRules.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 67%] Building CXX object src/CMakeFiles/sbml.dir/sbml/compress/CompressCommon.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/constraints/UnitsBase.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:452: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 68%] Building CXX object src/CMakeFiles/sbml.dir/sbml/compress/OutputCompressor.cpp.o cd 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-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/xml/XMLErrorLog.cpp.o -MF CMakeFiles/sbml.dir/sbml/xml/XMLErrorLog.cpp.o.d -o CMakeFiles/sbml.dir/sbml/xml/XMLErrorLog.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLErrorLog.cpp /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLErrorLog.cpp:103:24: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 103 | struct Delete : public unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/functional:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLErrorLog.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 68%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLError.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/xml/XMLOutputStream.cpp.o -MF CMakeFiles/sbml.dir/sbml/xml/XMLOutputStream.cpp.o.d -o CMakeFiles/sbml.dir/sbml/xml/XMLOutputStream.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLOutputStream.cpp /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLOutputStream.cpp: In member function ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLOutputStream.cpp:997:44: warning: ‘%02d’ directive output may be truncated writing between 2 and 11 bytes into a region of size between 5 and 15 [-Wformat-truncation=] 997 | snprintf(formattedDateAndTime, 17, "%d-%02d-%02d %02d:%02d", | ^~~~ In member function ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’, inlined from ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’ at /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLOutputStream.cpp:973:1: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLOutputStream.cpp:997:40: note: directive argument in the range [-2147483647, 2147483647] 997 | snprintf(formattedDateAndTime, 17, "%d-%02d-%02d %02d:%02d", | ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:964, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4097, from /usr/include/c++/13/string:54, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLOutputStream.cpp:44: In function ‘snprintf’, inlined from ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’ at /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLOutputStream.cpp:997:13, inlined from ‘XMLOutputStream::writeComment(std::__cxx11::basic_string, std::allocator > const&, std::__cxx11::basic_string, std::allocator > const&, bool)’ at /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLOutputStream.cpp:973:1: /usr/include/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 14 and 60 bytes into a destination of size 17 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 69%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLToken.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common 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'/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 69%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/XMLTriple.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util 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'/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 70%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/LibXMLTranscode.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util 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-Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/xml/LibXMLTranscode.cpp.o -MF CMakeFiles/sbml.dir/sbml/xml/LibXMLTranscode.cpp.o.d -o CMakeFiles/sbml.dir/sbml/xml/LibXMLTranscode.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/LibXMLTranscode.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 69%] Building CXX object src/CMakeFiles/sbml.dir/sbml/xml/LibXMLParser.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dsbml_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/CMakeFiles/sbml.dir/sbml/xml/LibXMLParser.cpp.o -MF CMakeFiles/sbml.dir/sbml/xml/LibXMLParser.cpp.o.d -o CMakeFiles/sbml.dir/sbml/xml/LibXMLParser.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/LibXMLParser.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 70%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestAttributeNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestAttributeNamespaces.cpp.o -MF CMakeFiles/test_comp_sbase.dir/TestAttributeNamespaces.cpp.o.d -o CMakeFiles/test_comp_sbase.dir/TestAttributeNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestAttributeNamespaces.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestAttributeNamespaces.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestAttributeNamespaces.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestAttributeNamespaces.cpp: In function ‘void test_comp_AttributeNamespaces_model_extraCompAtt_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestAttributeNamespaces.cpp:1129:17: warning: unused variable ‘errors’ [-Wunused-variable] 1129 | SBMLErrorLog* errors = doc->getErrorLog(); | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 70%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReadWriteSBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReadWriteSBase.cpp.o -MF CMakeFiles/test_comp_sbase.dir/TestReadWriteSBase.cpp.o.d -o CMakeFiles/test_comp_sbase.dir/TestReadWriteSBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestReadWriteSBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common/CompExtensionTypes.h:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestReadWriteSBase.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestReadWriteSBase.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 70%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o -MF CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o.d -o CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.h:116, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Deletion.h:104, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c: In function ‘void DeletionTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("Deletion_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c: In function ‘void test_comp_deletion_id_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c:113:10: warning: too many arguments for format [-Wformat-extra-args] 113 | fail("Deletion_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c:123:10: warning: too many arguments for format [-Wformat-extra-args] 123 | fail("Deletion_unsetId(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c: In function ‘void test_comp_deletion_name_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c:144:10: warning: too many arguments for format [-Wformat-extra-args] 144 | fail("Deletion_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c:154:10: warning: too many arguments for format [-Wformat-extra-args] 154 | fail("Deletion_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c: In function ‘void test_comp_deletion_metaid_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c:175:10: warning: too many arguments for format [-Wformat-extra-args] 175 | fail("SBase_setMetaId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestDeletion.c:184:10: warning: too many arguments for format [-Wformat-extra-args] 184 | fail("Deletion_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 70%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestExternalModelDefinition.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestExternalModelDefinition.c.o -MF CMakeFiles/test_comp_sbase.dir/TestExternalModelDefinition.c.o.d -o CMakeFiles/test_comp_sbase.dir/TestExternalModelDefinition.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ExternalModelDefinition.h:121, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c: In function ‘void ExternalModelDefinitionTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("ExternalModelDefinition_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c: In function ‘void test_comp_externalModelDefinition_id_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:117:10: warning: too many arguments for format [-Wformat-extra-args] 117 | fail("ExternalModelDefinition_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:127:10: warning: too many arguments for format [-Wformat-extra-args] 127 | fail("ExternalModelDefinition_unsetId(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c: In function ‘void test_comp_externalModelDefinition_name_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:148:10: warning: too many arguments for format [-Wformat-extra-args] 148 | fail("ExternalModelDefinition_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:158:10: warning: too many arguments for format [-Wformat-extra-args] 158 | fail("ExternalModelDefinition_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c: In function ‘void test_comp_externalModelDefinition_modelRef_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:179:10: warning: too many arguments for format [-Wformat-extra-args] 179 | fail("ExternalModelDefinition_setModelRef(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:189:10: warning: too many arguments for format [-Wformat-extra-args] 189 | fail("ExternalModelDefinition_unsetModelRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c: In function ‘void test_comp_externalModelDefinition_source_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:210:10: warning: too many arguments for format [-Wformat-extra-args] 210 | fail("ExternalModelDefinition_setSource(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestExternalModelDefinition.c:220:10: warning: too many arguments for format [-Wformat-extra-args] 220 | fail("ExternalModelDefinition_unsetSource(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 70%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSBaseObjects.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSBaseObjects.cpp.o -MF CMakeFiles/test_comp_sbase.dir/TestSBaseObjects.cpp.o.d -o CMakeFiles/test_comp_sbase.dir/TestSBaseObjects.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseObjects.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common/CompExtensionTypes.h:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseObjects.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseObjects.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 70%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestModelDefinition.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestModelDefinition.c.o -MF CMakeFiles/test_comp_sbase.dir/TestModelDefinition.c.o.d -o CMakeFiles/test_comp_sbase.dir/TestModelDefinition.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestModelDefinition.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ModelDefinition.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestModelDefinition.c:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestModelDefinition.c:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestModelDefinition.c:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestModelDefinition.c: In function ‘void ModelDefinitionTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestModelDefinition.c:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("ModelDefinition_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestModelDefinition.c: In function ‘void test_comp_modelDefinition_id_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestModelDefinition.c:108:10: warning: too many arguments for format [-Wformat-extra-args] 108 | fail("Model_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestModelDefinition.c:117:10: warning: too many arguments for format [-Wformat-extra-args] 117 | fail("Model_unsetId(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestModelDefinition.c: In function ‘void test_comp_modelDefinition_name_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestModelDefinition.c:138:10: warning: too many arguments for format [-Wformat-extra-args] 138 | fail("Model_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestModelDefinition.c:147:10: warning: too many arguments for format [-Wformat-extra-args] 147 | fail("Model_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 70%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestPort.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestPort.c.o -MF CMakeFiles/test_comp_sbase.dir/TestPort.c.o.d -o CMakeFiles/test_comp_sbase.dir/TestPort.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestPort.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Port.h:84, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestPort.c:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestPort.c:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestPort.c:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestPort.c: In function ‘void PortTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestPort.c:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("Port_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestPort.c: In function ‘void test_comp_port_id_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestPort.c:113:10: warning: too many arguments for format [-Wformat-extra-args] 113 | fail("Port_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestPort.c:123:10: warning: too many arguments for format [-Wformat-extra-args] 123 | fail("Port_unsetId(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestPort.c: In function ‘void test_comp_port_name_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestPort.c:144:10: warning: too many arguments for format [-Wformat-extra-args] 144 | fail("Port_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestPort.c:154:10: warning: too many arguments for format [-Wformat-extra-args] 154 | fail("Port_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 70%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o -MF CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o.d -o CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedBy.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ReplacedBy.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedBy.c:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedBy.c:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedBy.c:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedBy.c: In function ‘void ReplacedByTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedBy.c:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("ReplacedBy_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedBy.c: In function ‘void test_comp_replacedBy_submodelRef_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedBy.c:111:10: warning: too many arguments for format [-Wformat-extra-args] 111 | fail("ReplacedBy_setSubmodelRef(...) submodelRef not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedBy.c:121:10: warning: too many arguments for format [-Wformat-extra-args] 121 | fail("ReplacedBy_unsetSubmodelRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 70%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o -MF CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o.d -o CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/ReplacedElement.h:135, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c: In function ‘void ReplacedElementTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("ReplacedElement_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c: In function ‘void test_comp_replacedElement_submodelRef_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:115:10: warning: too many arguments for format [-Wformat-extra-args] 115 | fail("ReplacedElement_setSubmodelRef(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:125:10: warning: too many arguments for format [-Wformat-extra-args] 125 | fail("ReplacedElement_unsetSubmodelRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c: In function ‘void test_comp_replacedElement_deletion_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:146:10: warning: too many arguments for format [-Wformat-extra-args] 146 | fail("ReplacedElement_setDeletion(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:156:10: warning: too many arguments for format [-Wformat-extra-args] 156 | fail("ReplacedElement_unsetDeletion(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c: In function ‘void test_comp_replacedElement_conversionFactor_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:177:10: warning: too many arguments for format [-Wformat-extra-args] 177 | fail("ReplacedElement_setConversionFactor(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestReplacedElement.c:187:10: warning: too many arguments for format [-Wformat-extra-args] 187 | fail("ReplacedElement_unsetConversionFactor(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestRunner.c.o -MF CMakeFiles/test_comp_sbase.dir/TestRunner.c.o.d -o CMakeFiles/test_comp_sbase.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o -MF CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o.d -o CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/SBaseRef.h:116, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c: In function ‘void SBaseRefTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("SBaseRef_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c: In function ‘void test_comp_sBaseRef_idRef_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:119:10: warning: too many arguments for format [-Wformat-extra-args] 119 | fail("SBaseRef_setIdRef(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:129:10: warning: too many arguments for format [-Wformat-extra-args] 129 | fail("SBaseRef_unsetIdRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c: In function ‘void test_comp_sBaseRef_unitRef_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:150:10: warning: too many arguments for format [-Wformat-extra-args] 150 | fail("SBaseRef_setUnitRef(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:160:10: warning: too many arguments for format [-Wformat-extra-args] 160 | fail("SBaseRef_unsetUnitRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c: In function ‘void test_comp_sBaseRef_metaIdRef_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:181:10: warning: too many arguments for format [-Wformat-extra-args] 181 | fail("SBaseRef_setMetaIdRef(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:191:10: warning: too many arguments for format [-Wformat-extra-args] 191 | fail("SBaseRef_unsetMetaIdRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c: In function ‘void test_comp_sBaseRef_portRef_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:212:10: warning: too many arguments for format [-Wformat-extra-args] 212 | fail("SBaseRef_setPortRef(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:222:10: warning: too many arguments for format [-Wformat-extra-args] 222 | fail("SBaseRef_unsetPortRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c: In function ‘void test_comp_sBaseRef_sBaseRef_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:242:10: warning: too many arguments for format [-Wformat-extra-args] 242 | fail("SBaseRef_setSBaseRef(...) did not make a copy of the SBaseRef_t."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSBaseRef.c:251:10: warning: too many arguments for format [-Wformat-extra-args] 251 | fail("SBaseRef_unsetSBaseRef(P) did not clear the SBaseRef_t."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o -MF CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o.d -o CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/Submodel.h:117, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c: In function ‘void SubmodelTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c:65:10: warning: too many arguments for format [-Wformat-extra-args] 65 | fail("Submodel_create(3, 1, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c: In function ‘void test_comp_submodel_id_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c:125:10: warning: too many arguments for format [-Wformat-extra-args] 125 | fail("Submodel_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c:135:10: warning: too many arguments for format [-Wformat-extra-args] 135 | fail("Submodel_unsetId(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c: In function ‘void test_comp_submodel_name_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c:156:10: warning: too many arguments for format [-Wformat-extra-args] 156 | fail("Submodel_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c:166:10: warning: too many arguments for format [-Wformat-extra-args] 166 | fail("Submodel_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c: In function ‘void test_comp_submodel_modelRef_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c:187:10: warning: too many arguments for format [-Wformat-extra-args] 187 | fail("Submodel_setModelRef(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c:197:10: warning: too many arguments for format [-Wformat-extra-args] 197 | fail("Submodel_unsetModelRef(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c: In function ‘void test_comp_submodel_timeConversionFactor_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c:235:10: warning: too many arguments for format [-Wformat-extra-args] 235 | fail("Submodel_setTimeConversionFactor(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c:245:10: warning: too many arguments for format [-Wformat-extra-args] 245 | fail("Submodel_unsetTimeConversionFactor(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c: In function ‘void test_comp_submodel_extentConversionFactor_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c:266:10: warning: too many arguments for format [-Wformat-extra-args] 266 | fail("Submodel_setExtentConversionFactor(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c:276:10: warning: too many arguments for format [-Wformat-extra-args] 276 | fail("Submodel_unsetExtentConversionFactor(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c: In function ‘void test_comp_submodel_deletion_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test/TestSubmodel.c:299:10: warning: too many arguments for format [-Wformat-extra-args] 299 | fail("Submodel_addDeletion(...) did not make a copy of the deletion."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 70%] Linking CXX shared library libsbml.so cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/sbml.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall 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CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsInKineticLaw.cpp.o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueIdsInModel.cpp.o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueMetaId.cpp.o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueSpeciesTypesInCompartment.cpp.o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueSymbolsInInitialAssignments.cpp.o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInEventAssignments.cpp.o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInEventsAndRules.cpp.o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInInitialAssignmentsAndRules.cpp.o CMakeFiles/sbml.dir/sbml/validator/constraints/UniqueVarsInRules.cpp.o CMakeFiles/sbml.dir/sbml/validator/constraints/UnitsBase.cpp.o CMakeFiles/sbml.dir/sbml/validator/constraints/ValidCnUnitsValue.cpp.o CMakeFiles/sbml.dir/sbml/compress/CompressCommon.cpp.o CMakeFiles/sbml.dir/sbml/compress/InputDecompressor.cpp.o CMakeFiles/sbml.dir/sbml/compress/OutputCompressor.cpp.o CMakeFiles/sbml.dir/sbml/compress/bzfstream.cpp.o CMakeFiles/sbml.dir/sbml/compress/zfstream.cpp.o CMakeFiles/sbml.dir/sbml/compress/zipfstream.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLAttributes.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLBuffer.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLConstructorException.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLError.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLErrorLog.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLLogOverride.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLFileBuffer.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLHandler.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLInputStream.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLMemoryBuffer.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLNamespaces.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLNode.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLOutputStream.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLParser.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLToken.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLTokenizer.cpp.o CMakeFiles/sbml.dir/sbml/xml/XMLTriple.cpp.o CMakeFiles/sbml.dir/sbml/xml/LibXMLAttributes.cpp.o CMakeFiles/sbml.dir/sbml/xml/LibXMLHandler.cpp.o CMakeFiles/sbml.dir/sbml/xml/LibXMLNamespaces.cpp.o CMakeFiles/sbml.dir/sbml/xml/LibXMLParser.cpp.o CMakeFiles/sbml.dir/sbml/xml/LibXMLTranscode.cpp.o -lbz2 -lz -lminizip -lz -lxml2 cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src && /usr/bin/cmake -E cmake_symlink_library libsbml.so.5.19.0 libsbml.so.5 libsbml.so make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 71%] Built target sbml make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build.make src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/util/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build.make src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o -MF CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o.d -o CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common/CompExtensionTypes.h:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningConverter.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningConverter.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o -MF CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o.d -o CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningConverterStripPackage.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common/CompExtensionTypes.h:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningConverterStripPackage.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningConverterStripPackage.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o -MF CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o.d -o CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningErrorMessages.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common/CompExtensionTypes.h:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningErrorMessages.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningErrorMessages.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o -MF CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o.d -o CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningNewFlags.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common/CompExtensionTypes.h:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningNewFlags.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningNewFlags.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o -MF CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o.d -o CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningUnknownPackageRefs.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common/CompExtensionTypes.h:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningUnknownPackageRefs.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/test/TestCompFlatteningUnknownPackageRefs.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompLevelVersionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestCompLevelVersionConverter.cpp.o -MF CMakeFiles/test_comp_util.dir/TestCompLevelVersionConverter.cpp.o.d -o CMakeFiles/test_comp_util.dir/TestCompLevelVersionConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/test/TestCompLevelVersionConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common/CompExtensionTypes.h:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/test/TestCompLevelVersionConverter.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/test/TestCompLevelVersionConverter.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o -MF CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o.d -o CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/test/TestExternalModelResolving.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePlugin.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/test/TestExternalModelResolving.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/test/TestExternalModelResolving.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 71%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestURIResolvers.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestURIResolvers.cpp.o -MF CMakeFiles/test_comp_util.dir/TestURIResolvers.cpp.o.d -o CMakeFiles/test_comp_util.dir/TestURIResolvers.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/test/TestURIResolvers.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/test/TestURIResolvers.cpp:38: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/test/TestURIResolvers.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 72%] Building CXX object src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/TestRunner.c.o -MF CMakeFiles/test_comp_util.dir/TestRunner.c.o.d -o CMakeFiles/test_comp_util.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 71%] Linking CXX executable test_comp_sbase cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_sbase.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/test_comp_sbase.dir/TestAttributeNamespaces.cpp.o CMakeFiles/test_comp_sbase.dir/TestReadWriteSBase.cpp.o CMakeFiles/test_comp_sbase.dir/TestSBaseObjects.cpp.o CMakeFiles/test_comp_sbase.dir/TestDeletion.c.o CMakeFiles/test_comp_sbase.dir/TestExternalModelDefinition.c.o CMakeFiles/test_comp_sbase.dir/TestModelDefinition.c.o CMakeFiles/test_comp_sbase.dir/TestPort.c.o CMakeFiles/test_comp_sbase.dir/TestReplacedBy.c.o CMakeFiles/test_comp_sbase.dir/TestReplacedElement.c.o CMakeFiles/test_comp_sbase.dir/TestRunner.c.o CMakeFiles/test_comp_sbase.dir/TestSBaseRef.c.o CMakeFiles/test_comp_sbase.dir/TestSubmodel.c.o -o test_comp_sbase ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lz -lxml2 /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 72%] Built target test_comp_sbase make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build.make src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build.make src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 72%] Building CXX object src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o -MF CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o.d -o CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/test/TestCompConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 72%] Building CXX object src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestFile.cpp.o -MF CMakeFiles/test_comp_validator.dir/TestFile.cpp.o.d -o CMakeFiles/test_comp_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 72%] Building CXX object src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o -MF CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o.d -o CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/test/TestValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/test/TestValidator.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/test/TestValidator.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/test/TestValidator.cpp:75:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 75 | struct HasId : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/test/TestValidator.cpp:87:22: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 87 | struct ToId : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 67%] Linking CXX executable test_comp_extensions cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_extensions.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/test_comp_extensions.dir/TestCheckConsistency.cpp.o CMakeFiles/test_comp_extensions.dir/TestExtensionObjects.cpp.o CMakeFiles/test_comp_extensions.dir/TestMultipleNamespaces.cpp.o CMakeFiles/test_comp_extensions.dir/TestRunner.c.o -o test_comp_extensions ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lz -lxml2 /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 72%] Built target test_comp_extensions make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build.make src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/fbc/extension/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build.make src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 72%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestFbcAssociation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/fbc/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestFbcAssociation.cpp.o -MF CMakeFiles/test_sbml_package_fbc.dir/TestFbcAssociation.cpp.o.d -o CMakeFiles/test_sbml_package_fbc.dir/TestFbcAssociation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/test/TestFbcAssociation.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:147, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/test/TestFbcAssociation.cpp:14: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/test/TestFbcAssociation.cpp:12: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/test/TestFbcAssociation.cpp:13: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/test/TestFbcAssociation.cpp: In function ‘void FbcAssociationTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/test/TestFbcAssociation.cpp:60:10: warning: too many arguments for format [-Wformat-extra-args] 60 | fail("Failed to create a FbcAssociation object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 72%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/fbc/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o -MF CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o.d -o CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/test/TestFbcExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/test/TestFbcExtension.cpp:15: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/test/TestFbcExtension.cpp:12: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/test/TestFbcExtension.cpp:16: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/test/TestFbcExtension.cpp:13: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/test/TestFbcExtension.cpp: In function ‘void FbcExtensionTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/test/TestFbcExtension.cpp:53:10: warning: too many arguments for format [-Wformat-extra-args] 53 | fail("Failed to create a FbcExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 72%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/fbc/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o -MF CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o.d -o CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/test/TestReadFbcExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/test/TestReadFbcExtension.cpp:14: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/test/TestReadFbcExtension.cpp:12: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/test/TestReadFbcExtension.cpp:17: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 72%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/fbc/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o -MF CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o.d -o CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/test/TestWriteFbcExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/test/TestWriteFbcExtension.cpp:11: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/test/TestWriteFbcExtension.cpp:9: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/test/TestWriteFbcExtension.cpp:13: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/test/TestWriteFbcExtension.cpp:10: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/test/TestWriteFbcExtension.cpp: In function ‘void WriteFbcExtensionTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/test/TestWriteFbcExtension.cpp:46:10: warning: too many arguments for format [-Wformat-extra-args] 46 | fail("Failed to create a FbcExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 72%] Building CXX object src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/fbc/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 72%] Linking CXX executable test_comp_util cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/util/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_util.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/test_comp_util.dir/TestCompFlatteningConverter.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningConverterStripPackage.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningErrorMessages.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningNewFlags.cpp.o CMakeFiles/test_comp_util.dir/TestCompFlatteningUnknownPackageRefs.cpp.o CMakeFiles/test_comp_util.dir/TestCompLevelVersionConverter.cpp.o CMakeFiles/test_comp_util.dir/TestExternalModelResolving.cpp.o CMakeFiles/test_comp_util.dir/TestURIResolvers.cpp.o CMakeFiles/test_comp_util.dir/TestRunner.c.o -o test_comp_util ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lz -lxml2 /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 72%] Built target test_comp_util make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build.make src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/fbc/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build.make src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 72%] Building CXX object src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/fbc/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o -MF CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o.d -o CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/test/TestFbcConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 73%] Building CXX object src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/fbc/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o -MF CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o.d -o CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 73%] Building CXX object src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/fbc/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o -MF CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o.d -o CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/test/TestValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/test/TestValidator.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/test/TestValidator.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/test/TestValidator.cpp:75:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 75 | struct HasId : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/test/TestValidator.cpp:87:22: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 87 | struct ToId : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 72%] Linking CXX executable test_sbml_package_fbc cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/fbc/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_fbc.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/test_sbml_package_fbc.dir/TestFbcAssociation.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestFbcExtension.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestReadFbcExtension.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestWriteFbcExtension.cpp.o CMakeFiles/test_sbml_package_fbc.dir/TestRunner.c.o -o test_sbml_package_fbc ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lz -lxml2 /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 73%] Built target test_sbml_package_fbc make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build.make src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/groups/extension/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build.make src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 73%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o -MF CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o.d -o CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/test/TestGroupsExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common/GroupsExtensionTypes.h:50, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/test/TestGroupsExtension.cpp:41: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/test/TestGroupsExtension.cpp:38: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/test/TestGroupsExtension.cpp:39: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/test/TestGroupsExtension.cpp: In function ‘void GroupsExtensionTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/test/TestGroupsExtension.cpp:75:10: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("Failed to create a GroupsExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 73%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o -MF CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o.d -o CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/test/TestGroupsModelPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/GroupsExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common/GroupsExtensionTypes.h:50, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/test/TestGroupsModelPlugin.cpp:41: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/test/TestGroupsModelPlugin.cpp:38: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 73%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestReadGroupsExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestReadGroupsExtension.cpp.o -MF CMakeFiles/test_extension_package_groups.dir/TestReadGroupsExtension.cpp.o.d -o CMakeFiles/test_extension_package_groups.dir/TestReadGroupsExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/test/TestReadGroupsExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/test/TestReadGroupsExtension.cpp:41: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/test/TestReadGroupsExtension.cpp:39: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 73%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestWriteGroupsExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestWriteGroupsExtension.cpp.o -MF CMakeFiles/test_extension_package_groups.dir/TestWriteGroupsExtension.cpp.o.d -o CMakeFiles/test_extension_package_groups.dir/TestWriteGroupsExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/test/TestWriteGroupsExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/test/TestWriteGroupsExtension.cpp:41: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/test/TestWriteGroupsExtension.cpp:39: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/test/TestWriteGroupsExtension.cpp:40: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/test/TestWriteGroupsExtension.cpp: In function ‘void WriteGroupsExtensionTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/test/TestWriteGroupsExtension.cpp:72:22: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("Failed to create a GroupsExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 73%] Building CXX object src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/TestRunner.c.o -MF CMakeFiles/test_extension_package_groups.dir/TestRunner.c.o.d -o CMakeFiles/test_extension_package_groups.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 72%] Linking CXX executable test_comp_validator cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_comp_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/test_comp_validator.dir/TestCompConsistencyValidator.cpp.o CMakeFiles/test_comp_validator.dir/TestFile.cpp.o CMakeFiles/test_comp_validator.dir/TestValidator.cpp.o -o test_comp_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lz -lxml2 /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 73%] Built target test_comp_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build.make src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/groups/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build.make src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 73%] Building CXX object src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/groups/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/TestFile.cpp.o -MF CMakeFiles/test_groups_validator.dir/TestFile.cpp.o.d -o CMakeFiles/test_groups_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 73%] Building CXX object src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/TestGroupsConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/groups/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/TestGroupsConsistencyValidator.cpp.o -MF CMakeFiles/test_groups_validator.dir/TestGroupsConsistencyValidator.cpp.o.d -o CMakeFiles/test_groups_validator.dir/TestGroupsConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/test/TestGroupsConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 73%] Building CXX object src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/groups/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/TestValidator.cpp.o -MF CMakeFiles/test_groups_validator.dir/TestValidator.cpp.o.d -o CMakeFiles/test_groups_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/test/TestValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/test/TestValidator.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/test/TestValidator.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/test/TestValidator.cpp:75:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 75 | struct HasId : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/test/TestValidator.cpp:87:22: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 87 | struct ToId : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 73%] Linking CXX executable test_fbc_validator cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/fbc/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_fbc_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/test_fbc_validator.dir/TestFbcConsistencyValidator.cpp.o CMakeFiles/test_fbc_validator.dir/TestFile.cpp.o CMakeFiles/test_fbc_validator.dir/TestValidator.cpp.o -o test_fbc_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lz -lxml2 /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 73%] Built target test_fbc_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/build.make src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/l3v2extendedmath/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/build.make src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 73%] Building CXX object src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/l3v2extendedmath/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/TestFile.cpp.o -MF CMakeFiles/test_l3v2extendedmath_validator.dir/TestFile.cpp.o.d -o CMakeFiles/test_l3v2extendedmath_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 73%] Building CXX object src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/TestL3v2MathConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/l3v2extendedmath/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/TestL3v2MathConsistencyValidator.cpp.o -MF CMakeFiles/test_l3v2extendedmath_validator.dir/TestL3v2MathConsistencyValidator.cpp.o.d -o CMakeFiles/test_l3v2extendedmath_validator.dir/TestL3v2MathConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/test/TestL3v2MathConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 73%] Building CXX object src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/l3v2extendedmath/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/TestValidator.cpp.o -MF CMakeFiles/test_l3v2extendedmath_validator.dir/TestValidator.cpp.o.d -o CMakeFiles/test_l3v2extendedmath_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/test/TestValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/test/TestValidator.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/test/TestValidator.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/test/TestValidator.cpp:75:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 75 | struct HasId : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/test/TestValidator.cpp:87:22: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 87 | struct ToId : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 73%] Linking CXX executable test_groups_validator cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/groups/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_groups_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/test_groups_validator.dir/TestFile.cpp.o CMakeFiles/test_groups_validator.dir/TestGroupsConsistencyValidator.cpp.o CMakeFiles/test_groups_validator.dir/TestValidator.cpp.o -o test_groups_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 73%] Built target test_groups_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/build.make src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/build.make src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 73%] Building CXX object src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestL3v2EMExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestL3v2EMExtension.cpp.o -MF CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestL3v2EMExtension.cpp.o.d -o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestL3v2EMExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestL3v2EMExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathExtension.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common/L3v2extendedmathExtensionTypes.h:50, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestL3v2EMExtension.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestL3v2EMExtension.cpp:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestL3v2EMExtension.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestL3v2EMExtension.cpp: In function ‘void L3v2EMExtensionTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestL3v2EMExtension.cpp:81:10: warning: too many arguments for format [-Wformat-extra-args] 81 | fail("Failed to create a L3v2extendedmathExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 74%] Building CXX object src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadL3v2EMExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadL3v2EMExtension.cpp.o -MF CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadL3v2EMExtension.cpp.o.d -o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadL3v2EMExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestReadL3v2EMExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestReadL3v2EMExtension.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestReadL3v2EMExtension.cpp:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 74%] Building CXX object src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadWriteInfix.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadWriteInfix.cpp.o -MF CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadWriteInfix.cpp.o.d -o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadWriteInfix.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestReadWriteInfix.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestReadWriteInfix.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestReadWriteInfix.cpp:48: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 74%] Building CXX object src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestRunner.c.o -MF CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestRunner.c.o.d -o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 74%] Building CXX object src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestWriteL3v2EMExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestWriteL3v2EMExtension.cpp.o -MF CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestWriteL3v2EMExtension.cpp.o.d -o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestWriteL3v2EMExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp:48: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp: In function ‘void WriteL3v2EMExtensionTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp:81:10: warning: too many arguments for format [-Wformat-extra-args] 81 | fail("Failed to create a L3v2extendedmathExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp: At global scope: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp:469:13: warning: ‘test_L3v2EMExtension_read_disable_via_sbmldocument_and_write_L3V1V1’ defined but not used [-Wunused-variable] 469 | START_TEST (test_L3v2EMExtension_read_disable_via_sbmldocument_and_write_L3V1V1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp:386:13: warning: ‘test_L3v2EMExtension_read_enable_via_sbmldocument_and_write_L3V1V1’ defined but not used [-Wunused-variable] 386 | START_TEST (test_L3v2EMExtension_read_enable_via_sbmldocument_and_write_L3V1V1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp:309:13: warning: ‘test_L3v2EMExtension_read_disable_via_model_and_write_L3V1V1’ defined but not used [-Wunused-variable] 309 | START_TEST (test_L3v2EMExtension_read_disable_via_model_and_write_L3V1V1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/test/TestWriteL3v2EMExtension.cpp:225:13: warning: ‘test_L3v2EMExtension_read_enable_via_model_and_write_L3V1V1’ defined but not used [-Wunused-variable] 225 | START_TEST (test_L3v2EMExtension_read_enable_via_model_and_write_L3V1V1) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 73%] Linking CXX executable test_extension_package_groups cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/groups/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_extension_package_groups.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/test_extension_package_groups.dir/TestGroupsExtension.cpp.o CMakeFiles/test_extension_package_groups.dir/TestGroupsModelPlugin.cpp.o CMakeFiles/test_extension_package_groups.dir/TestReadGroupsExtension.cpp.o CMakeFiles/test_extension_package_groups.dir/TestWriteGroupsExtension.cpp.o CMakeFiles/test_extension_package_groups.dir/TestRunner.c.o -o test_extension_package_groups ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lz -lxml2 /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 74%] Built target test_extension_package_groups make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build.make src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/sbml/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build.make src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 74%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestBoundingBox.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestBoundingBox.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestBoundingBox.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestBoundingBox.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestBoundingBox.cpp: In function ‘void BoundingBoxTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestBoundingBox.cpp:60:10: warning: too many arguments for format [-Wformat-extra-args] 60 | fail("BoundingBox(); returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 74%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestCompartmentGlyph.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestCompartmentGlyph.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestCompartmentGlyph.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestCompartmentGlyph.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestCompartmentGlyph.cpp: In function ‘void CompartmentGlyphTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestCompartmentGlyph.cpp:64:10: warning: too many arguments for format [-Wformat-extra-args] 64 | fail("new(std::nothrow) CompartmentGlyph() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 74%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestCubicBezier.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestCubicBezier.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestCubicBezier.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestCubicBezier.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestCubicBezier.cpp: In function ‘void CubicBezierTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestCubicBezier.cpp:63:10: warning: too many arguments for format [-Wformat-extra-args] 63 | fail("CubicBezier_create(); returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 74%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestCurve.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:77, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestCurve.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestCurve.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestCurve.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestCurve.cpp: In function ‘void CurveTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestCurve.cpp:60:10: warning: too many arguments for format [-Wformat-extra-args] 60 | fail("Curve_create(); returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 74%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestDimensions.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Dimensions.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestDimensions.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestDimensions.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestDimensions.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestDimensions.cpp: In function ‘void DimensionsTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestDimensions.cpp:62:10: warning: too many arguments for format [-Wformat-extra-args] 62 | fail("new(std::nothrow)Dimensions() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestGeneralGlyph.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestGeneralGlyph.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestGeneralGlyph.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:65: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:64: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestGeneralGlyph.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestGeneralGlyph.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestGeneralGlyph.cpp: In function ‘void GeneralGlyphTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestGeneralGlyph.cpp:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("new(std::nothrow) GeneralGlyph() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestGraphicalObject.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:44, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestGraphicalObject.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestGraphicalObject.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:62: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:63: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestGraphicalObject.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestGraphicalObject.cpp: In function ‘void GraphicalObjectTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestGraphicalObject.cpp:71:10: warning: too many arguments for format [-Wformat-extra-args] 71 | fail("new (std::nothrow) GraphicalObject returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayout.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayout.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestLayout.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestLayout.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestLayout.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:66, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestLayout.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestLayout.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:65, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestLayout.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestLayout.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestLayout.cpp: In function ‘void LayoutTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestLayout.cpp:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("new(std::nothrow) Layout() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutCreation.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:66, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutCreation.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutCreation.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutCreation.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutFormatter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:66, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutFormatter.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutFormatter.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutFormatter.cpp:54: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 73%] Linking CXX executable test_l3v2extendedmath_validator cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/l3v2extendedmath/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_l3v2extendedmath_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/test_l3v2extendedmath_validator.dir/TestFile.cpp.o CMakeFiles/test_l3v2extendedmath_validator.dir/TestL3v2MathConsistencyValidator.cpp.o CMakeFiles/test_l3v2extendedmath_validator.dir/TestValidator.cpp.o -o test_l3v2extendedmath_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 75%] Built target test_l3v2extendedmath_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build.make src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build.make src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 75%] Building CXX object src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestFile.cpp.o -MF CMakeFiles/test_layout_validator.dir/TestFile.cpp.o.d -o CMakeFiles/test_layout_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 76%] Building CXX object src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o -MF CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o.d -o CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/test/TestLayoutConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 76%] Building CXX object src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o -MF CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o.d -o CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/test/TestValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/test/TestValidator.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/test/TestValidator.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/test/TestValidator.cpp:82:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 82 | struct HasId : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/test/TestValidator.cpp:94:22: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 94 | struct ToId : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 75%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutWriting.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:58, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutWriting.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutWriting.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestLayoutWriting.cpp:56: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestLineSegment.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestLineSegment.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestLineSegment.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestLineSegment.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestLineSegment.cpp: In function ‘void LineSegmentTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestLineSegment.cpp:64:10: warning: too many arguments for format [-Wformat-extra-args] 64 | fail("LineSegment_create(); returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestPoint.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestPoint.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestPoint.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestPoint.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestPoint.cpp: In function ‘void PointTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestPoint.cpp:62:10: warning: too many arguments for format [-Wformat-extra-args] 62 | fail("new(std::nothrow) Point() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestPoint.cpp: In function ‘void test_Point_createWithCoordinates_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestPoint.cpp:91:10: warning: too many arguments for format [-Wformat-extra-args] 91 | fail("new(std::nothrow) Point(1.2,0.4,3.1415) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestReactionGlyph.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestReactionGlyph.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestReactionGlyph.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestReactionGlyph.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestReactionGlyph.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestReactionGlyph.cpp: In function ‘void ReactionGlyphTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestReactionGlyph.cpp:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("new(std::nothrow) ReactionGlyph() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestReferenceGlyph.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestReferenceGlyph.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestReferenceGlyph.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:64: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestReferenceGlyph.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestReferenceGlyph.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestReferenceGlyph.cpp: In function ‘void ReferenceGlyphTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestReferenceGlyph.cpp:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("new(std::nothrow) ReferenceGlyph() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestSBMLHandler.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestSBMLHandler.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestSBMLHandler.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestSBMLHandler.cpp:54: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestSBMLHandler.cpp:61: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 76%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesGlyph.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:58, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesGlyph.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesGlyph.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesGlyph.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesGlyph.cpp: In function ‘void SpeciesGlyphTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesGlyph.cpp:66:10: warning: too many arguments for format [-Wformat-extra-args] 66 | fail("new(std::nothrow) SpeciesGlyph() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesReferenceGlyph.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesReferenceGlyph.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesReferenceGlyph.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:65: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesReferenceGlyph.cpp:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesReferenceGlyph.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesReferenceGlyph.cpp: In function ‘void SpeciesReferenceGlyphTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestSpeciesReferenceGlyph.cpp:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("new(std::nothrow) SpeciesReferenceGlyph() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestTextGlyph.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutExtension.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Point.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/BoundingBox.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:59, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestTextGlyph.cpp:40: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:58: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestTextGlyph.cpp:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestTextGlyph.cpp: In function ‘void TextGlyphTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestTextGlyph.cpp:57:10: warning: too many arguments for format [-Wformat-extra-args] 57 | fail("new(std::nothrow) TextGlyph() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o -MF CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o.d -o CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Building CXX object src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 74%] Linking CXX executable test_extension_package_l3v2extendedmath cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_extension_package_l3v2extendedmath.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestL3v2EMExtension.cpp.o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadL3v2EMExtension.cpp.o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestReadWriteInfix.cpp.o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestWriteL3v2EMExtension.cpp.o CMakeFiles/test_extension_package_l3v2extendedmath.dir/TestRunner.c.o -o test_extension_package_l3v2extendedmath ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lz -lxml2 /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Built target test_extension_package_l3v2extendedmath make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build.make src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/multi/extension/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build.make src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestCheckConsistency.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/multi/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestCheckConsistency.cpp.o -MF CMakeFiles/test_sbml_package_multi.dir/TestCheckConsistency.cpp.o.d -o CMakeFiles/test_sbml_package_multi.dir/TestCheckConsistency.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/test/TestCheckConsistency.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.h:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/test/TestCheckConsistency.cpp:37: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/test/TestCheckConsistency.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/multi/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o -MF CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o.d -o CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/test/TestMultiAST.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLDocumentPlugin.h:74, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiSBMLDocumentPlugin.h:55, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/test/TestMultiAST.cpp:12: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/test/TestMultiAST.cpp:10: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestMultiExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/multi/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestMultiExtension.cpp.o -MF CMakeFiles/test_sbml_package_multi.dir/TestMultiExtension.cpp.o.d -o CMakeFiles/test_sbml_package_multi.dir/TestMultiExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/test/TestMultiExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/MultiExtension.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/test/TestMultiExtension.cpp:15: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/test/TestMultiExtension.cpp:12: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/test/TestMultiExtension.cpp:13: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/test/TestMultiExtension.cpp: In function ‘void MultiExtensionTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/test/TestMultiExtension.cpp:52:10: warning: too many arguments for format [-Wformat-extra-args] 52 | fail("Failed to create a MultiExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Building CXX object src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/multi/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_package_multi.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_package_multi.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 76%] Linking CXX executable test_layout_validator cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_layout_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/test_layout_validator.dir/TestFile.cpp.o CMakeFiles/test_layout_validator.dir/TestLayoutConsistencyValidator.cpp.o CMakeFiles/test_layout_validator.dir/TestValidator.cpp.o -o test_layout_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lz -lxml2 /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Built target test_layout_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build.make src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/multi/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build.make src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Building CXX object src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/multi/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestFile.cpp.o -MF CMakeFiles/test_multi_validator.dir/TestFile.cpp.o.d -o CMakeFiles/test_multi_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Building CXX object src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestMultiConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/multi/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestMultiConsistencyValidator.cpp.o -MF CMakeFiles/test_multi_validator.dir/TestMultiConsistencyValidator.cpp.o.d -o CMakeFiles/test_multi_validator.dir/TestMultiConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/test/TestMultiConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Building CXX object src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/multi/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/TestValidator.cpp.o -MF CMakeFiles/test_multi_validator.dir/TestValidator.cpp.o.d -o CMakeFiles/test_multi_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/test/TestValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/test/TestValidator.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/test/TestValidator.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/test/TestValidator.cpp:75:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 75 | struct HasId : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/test/TestValidator.cpp:87:22: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 87 | struct ToId : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Linking CXX executable test_sbml_package_multi cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/multi/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_multi.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/test_sbml_package_multi.dir/TestCheckConsistency.cpp.o CMakeFiles/test_sbml_package_multi.dir/TestMultiAST.cpp.o CMakeFiles/test_sbml_package_multi.dir/TestMultiExtension.cpp.o CMakeFiles/test_sbml_package_multi.dir/TestRunner.c.o -o test_sbml_package_multi ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lz -lxml2 /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Built target test_sbml_package_multi make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build.make src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/extension/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build.make src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o -MF CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o.d -o CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/test/TestGetAllElements.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/test/TestGetAllElements.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/test/TestGetAllElements.cpp:48: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o -MF CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o.d -o CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/test/TestQualExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common/QualExtensionTypes.h:50, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/test/TestQualExtension.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/test/TestQualExtension.cpp:47: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/test/TestQualExtension.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/test/TestQualExtension.cpp: In function ‘void QualExtensionTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/test/TestQualExtension.cpp:84:10: warning: too many arguments for format [-Wformat-extra-args] 84 | fail("Failed to create a QualExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestReadQualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestReadQualExtension.cpp.o -MF CMakeFiles/test_extension_package_qual.dir/TestReadQualExtension.cpp.o.d -o CMakeFiles/test_extension_package_qual.dir/TestReadQualExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/test/TestReadQualExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/test/TestReadQualExtension.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/test/TestReadQualExtension.cpp:48: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o -MF CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o.d -o CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/test/TestWriteQualExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/test/TestWriteQualExtension.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/test/TestWriteQualExtension.cpp:48: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/test/TestWriteQualExtension.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/test/TestWriteQualExtension.cpp: In function ‘void WriteQualExtensionTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/test/TestWriteQualExtension.cpp:82:22: warning: too many arguments for format [-Wformat-extra-args] 82 | fail("Failed to create a QualExtension object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Building CXX object src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o -MF CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o.d -o CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Linking CXX executable test_sbml_package_layout cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_layout.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/test_sbml_package_layout.dir/TestBoundingBox.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestCompartmentGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestCubicBezier.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestCurve.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestDimensions.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestGeneralGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestGraphicalObject.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayout.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayoutCreation.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayoutFormatter.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLayoutWriting.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestLineSegment.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestPoint.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestReactionGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestReferenceGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestSBMLHandler.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestSpeciesReferenceGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestTextGlyph.cpp.o CMakeFiles/test_sbml_package_layout.dir/utility.cpp.o CMakeFiles/test_sbml_package_layout.dir/TestRunner.c.o -o test_sbml_package_layout ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lz -lxml2 /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Built target test_sbml_package_layout make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build.make src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/sbml/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build.make src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o -MF CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o.d -o CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestCopyAndClone.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/Input.h:106, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestCopyAndClone.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestCopyAndClone.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o -MF CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o.d -o CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestDefaultTerm.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/L3Parser.h:46, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestDefaultTerm.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestDefaultTerm.cpp:47: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestDefaultTerm.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestDefaultTerm.cpp: In function ‘void DefaultTermTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestDefaultTerm.cpp:77:10: warning: too many arguments for format [-Wformat-extra-args] 77 | fail("Failed to create a DefaultTerm object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 78%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o -MF CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o.d -o CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestFunctionTerm.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/L3Parser.h:46, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestFunctionTerm.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestFunctionTerm.cpp:47: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestFunctionTerm.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestFunctionTerm.cpp: In function ‘void FunctionTermTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestFunctionTerm.cpp:78:10: warning: too many arguments for format [-Wformat-extra-args] 78 | fail("Failed to create a FunctionTerm object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 78%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o -MF CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o.d -o CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestInput.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common/QualExtensionTypes.h:50, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestInput.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestInput.cpp:47: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestInput.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestInput.cpp: In function ‘void InputTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestInput.cpp:76:10: warning: too many arguments for format [-Wformat-extra-args] 76 | fail("Failed to create a Input object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 78%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o -MF CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o.d -o CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestListOfFunctionTerms.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/L3Parser.h:46, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestListOfFunctionTerms.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestListOfFunctionTerms.cpp:47: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestListOfFunctionTerms.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestListOfFunctionTerms.cpp: In function ‘void ListOfFunctionTermsTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestListOfFunctionTerms.cpp:77:10: warning: too many arguments for format [-Wformat-extra-args] 77 | fail("Failed to create a ListOfFunctionTerms object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 78%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o -MF CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o.d -o CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestOutput.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common/QualExtensionTypes.h:50, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestOutput.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestOutput.cpp:47: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestOutput.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestOutput.cpp: In function ‘void OutputTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestOutput.cpp:76:10: warning: too many arguments for format [-Wformat-extra-args] 76 | fail("Failed to create a Output object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 78%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o -MF CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o.d -o CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestQualitativeSpecies.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common/QualExtensionTypes.h:50, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestQualitativeSpecies.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestQualitativeSpecies.cpp:47: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestQualitativeSpecies.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestQualitativeSpecies.cpp: In function ‘void QualitativeSpeciesTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestQualitativeSpecies.cpp:76:10: warning: too many arguments for format [-Wformat-extra-args] 76 | fail("Failed to create a QualitativeSpecies object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 78%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o -MF CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o.d -o CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestTransition.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/QualExtension.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common/QualExtensionTypes.h:50, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestTransition.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestTransition.cpp:47: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestTransition.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestTransition.cpp: In function ‘void TransitionTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestTransition.cpp:76:10: warning: too many arguments for format [-Wformat-extra-args] 76 | fail("Failed to create a Transition object"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 78%] Building CXX object src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Linking CXX executable test_multi_validator cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/multi/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_multi_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/test_multi_validator.dir/TestFile.cpp.o CMakeFiles/test_multi_validator.dir/TestMultiConsistencyValidator.cpp.o CMakeFiles/test_multi_validator.dir/TestValidator.cpp.o -o test_multi_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lz -lxml2 /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 78%] Built target test_multi_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build.make src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build.make src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 78%] Building CXX object src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestFile.cpp.o -MF CMakeFiles/test_qual_validator.dir/TestFile.cpp.o.d -o CMakeFiles/test_qual_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 78%] Building CXX object src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestQualConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestQualConsistencyValidator.cpp.o -MF CMakeFiles/test_qual_validator.dir/TestQualConsistencyValidator.cpp.o.d -o CMakeFiles/test_qual_validator.dir/TestQualConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/test/TestQualConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 78%] Building CXX object src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o -MF CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o.d -o CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/test/TestValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/test/TestValidator.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/test/TestValidator.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/test/TestValidator.cpp:82:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 82 | struct HasId : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/test/TestValidator.cpp:94:22: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 94 | struct ToId : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 78%] Linking CXX executable test_sbml_package_qual cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_qual.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/test_sbml_package_qual.dir/TestCopyAndClone.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestDefaultTerm.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestFunctionTerm.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestInput.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestListOfFunctionTerms.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestOutput.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestQualitativeSpecies.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestTransition.cpp.o CMakeFiles/test_sbml_package_qual.dir/TestRunner.c.o -o test_sbml_package_qual ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 78%] Built target test_sbml_package_qual make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 78%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestColorDefinition.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestColorDefinition.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestColorDefinition.cpp:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestColorDefinition.cpp:55: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestColorDefinition.cpp: In function ‘void ColorDefinitionTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestColorDefinition.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)ColorDefinition(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 78%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestEllipse.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestEllipse.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestEllipse.cpp:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestEllipse.cpp:54: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestEllipse.cpp: In function ‘void EllipseTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestEllipse.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)Ellipse(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 78%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGlobalRenderInformation.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGlobalRenderInformation.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGlobalRenderInformation.cpp:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGlobalRenderInformation.cpp:56: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGlobalRenderInformation.cpp: In function ‘void GlobalRenderInformationTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGlobalRenderInformation.cpp:76:14: warning: too many arguments for format [-Wformat-extra-args] 76 | fail("new(std::nothrow)GlobalRenderInformation(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 78%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGlobalStyle.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGlobalStyle.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGlobalStyle.cpp:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGlobalStyle.cpp:57: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGlobalStyle.cpp: In function ‘void GlobalStyleTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGlobalStyle.cpp:77:14: warning: too many arguments for format [-Wformat-extra-args] 77 | fail("new(std::nothrow)GlobalStyle(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 78%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGradientBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGradientBase.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGradientBase.cpp:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGradientBase.cpp:55: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGradientBase.cpp: In function ‘void GradientBaseTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGradientBase.cpp:75:14: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("new(std::nothrow)LinearGradient(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGradientStop.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGradientStop.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGradientStop.cpp:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGradientStop.cpp:54: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGradientStop.cpp: In function ‘void GradientStop_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGradientStop.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)GradientStop(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive1D.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive1D.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive1D.cpp:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive1D.cpp:55: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive1D.cpp: In function ‘void GraphicalPrimitive1DTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive1D.cpp:75:14: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("new(std::nothrow)Text(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive2D.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive2D.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive2D.cpp:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive2D.cpp:55: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive2D.cpp: In function ‘void GraphicalPrimitive2DTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGraphicalPrimitive2D.cpp:75:14: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("new(std::nothrow)Rectangle(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGroup.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGroup.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGroup.cpp:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGroup.cpp:54: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGroup.cpp: In function ‘void GroupTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestGroup.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)Group(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestImage.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestImage.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestImage.cpp:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestImage.cpp:54: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestImage.cpp: In function ‘void ImageTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestImage.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)Image(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestLineEnding.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestLineEnding.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestLineEnding.cpp:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestLineEnding.cpp:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestLineEnding.cpp: In function ‘void LineEndingTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestLineEnding.cpp:75:14: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("new(std::nothrow)LineEnding(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestLinearGradient.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestLinearGradient.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestLinearGradient.cpp:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestLinearGradient.cpp:54: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestLinearGradient.cpp: In function ‘void LinearGradientTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestLinearGradient.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)LinearGradient(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestLocalRenderInformation.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestLocalRenderInformation.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestLocalRenderInformation.cpp:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestLocalRenderInformation.cpp:56: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestLocalRenderInformation.cpp: In function ‘void LocalRenderInformationTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestLocalRenderInformation.cpp:76:14: warning: too many arguments for format [-Wformat-extra-args] 76 | fail("new(std::nothrow)LocalRenderInformation(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestLocalStyle.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestLocalStyle.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestLocalStyle.cpp:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestLocalStyle.cpp:57: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestLocalStyle.cpp: In function ‘void LocalStyleTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestLocalStyle.cpp:77:14: warning: too many arguments for format [-Wformat-extra-args] 77 | fail("new(std::nothrow)LocalStyle(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestPolygon.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestPolygon.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestPolygon.cpp:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestPolygon.cpp:54: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestPolygon.cpp: In function ‘void PolygonTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestPolygon.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)Polygon(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRadialGradient.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRadialGradient.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRadialGradient.cpp:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRadialGradient.cpp:54: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRadialGradient.cpp: In function ‘void RadialGradientTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRadialGradient.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)RadialGradient(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 79%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRectangle.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRectangle.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRectangle.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRectangle.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRectangle.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRectangle.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRectangle.cpp:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRectangle.cpp:54: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRectangle.cpp: In function ‘void RectangleTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRectangle.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)Rectangle(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRelAbsVector.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RelAbsVector.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRelAbsVector.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRelAbsVector.cpp:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRelAbsVector.cpp:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRelAbsVector.cpp: In function ‘void RelAbsVectorTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRelAbsVector.cpp:72:14: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("new(std::nothrow)RelAbsVector() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Linking CXX executable test_extension_package_qual cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_extension_package_qual.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/test_extension_package_qual.dir/TestGetAllElements.cpp.o CMakeFiles/test_extension_package_qual.dir/TestQualExtension.cpp.o CMakeFiles/test_extension_package_qual.dir/TestReadQualExtension.cpp.o CMakeFiles/test_extension_package_qual.dir/TestWriteQualExtension.cpp.o CMakeFiles/test_extension_package_qual.dir/TestRunner.c.o -o test_extension_package_qual ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lz -lxml2 /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 80%] Built target test_extension_package_qual make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build.make src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build.make src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 80%] Building CXX object src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/TestFile.cpp.o -MF CMakeFiles/test_render_validator.dir/TestFile.cpp.o.d -o CMakeFiles/test_render_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderCubicBezier.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderCubicBezier.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderCubicBezier.cpp:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderCubicBezier.cpp:55: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderCubicBezier.cpp: In function ‘void RenderCubicBezierTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderCubicBezier.cpp:75:14: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("new(std::nothrow)RenderCubicBezier(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 80%] Building CXX object src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/TestRenderConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/TestRenderConsistencyValidator.cpp.o -MF CMakeFiles/test_render_validator.dir/TestRenderConsistencyValidator.cpp.o.d -o CMakeFiles/test_render_validator.dir/TestRenderConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/test/TestRenderConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 81%] Building CXX object src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/TestValidator.cpp.o -MF CMakeFiles/test_render_validator.dir/TestValidator.cpp.o.d -o CMakeFiles/test_render_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/test/TestValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/test/TestValidator.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/test/TestValidator.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/test/TestValidator.cpp:82:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 82 | struct HasId : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/test/TestValidator.cpp:94:22: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 94 | struct ToId : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 80%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderCurve.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderCurve.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderCurve.cpp:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderCurve.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderCurve.cpp: In function ‘void RenderCurveTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderCurve.cpp:72:14: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("new(std::nothrow)RenderCurve(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderInformationBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderInformationBase.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderInformationBase.cpp:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderInformationBase.cpp:55: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderInformationBase.cpp: In function ‘void RenderInformationBaseTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderInformationBase.cpp:75:14: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("new(std::nothrow)GlobalRenderInformation(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common/RenderExtensionTypes.h:50, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderExtension.cpp:13: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderExtension.cpp:5: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/util/LayoutUtilities.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/RenderCubicBezier.h:72, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/ListOfCurveElements.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Polygon.h:75, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common/RenderExtensionTypes.h:75: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderExtension.cpp:14: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:62: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlypmake[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' h& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/common/LayoutExtensionTypes.h:63: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 78%] Linking CXX executable test_qual_validator cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_qual_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/test_qual_validator.dir/TestFile.cpp.o CMakeFiles/test_qual_validator.dir/TestQualConsistencyValidator.cpp.o CMakeFiles/test_qual_validator.dir/TestValidator.cpp.o -o test_qual_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lz -lxml2 /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 81%] Built target test_qual_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/annotation/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderPoint.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderPoint.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderPoint.cpp:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderPoint.cpp:54: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderPoint.cpp: In function ‘void RenderPointTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderPoint.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)RenderPoint(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o -MF CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o.d -o CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestCopyAndClone.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o -MF CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o.d -o CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestL3ModelHistory.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestL3ModelHistory.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestL3ModelHistory.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation.cpp.o -MF CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation.cpp.o.d -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestRDFAnnotation.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestRDFAnnotation.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestRDFAnnotation.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o -MF CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o.d -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestRDFAnnotation2.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestRDFAnnotation2.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestRDFAnnotation2.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestRDFAnnotation2.cpp:55: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestRDFAnnotation2.cpp: In function ‘void test_RDFAnnotation2_modelWithHistoryAndCVTerms_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestRDFAnnotation2.cpp:223:10: warning: too many arguments for format [-Wformat-extra-args] 223 | fail("parseModelHistory failed"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationMetaid.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationMetaid.cpp.o -MF CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationMetaid.cpp.o.d -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationMetaid.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestRDFAnnotationMetaid.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestRDFAnnotationMetaid.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestRDFAnnotationMetaid.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationNestedCVTerms.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationNestedCVTerms.cpp.o -MF CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationNestedCVTerms.cpp.o.d -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationNestedCVTerms.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestRDFAnnotationNestedCVTerms.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestRDFAnnotationNestedCVTerms.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestRDFAnnotationNestedCVTerms.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationVCard4.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationVCard4.cpp.o -MF CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationVCard4.cpp.o.d -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationVCard4.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp:55: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp: In function ‘void test_RDFAnnotationV4_modelWithHistoryAndCVTerms_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp:232:10: warning: too many arguments for format [-Wformat-extra-args] 232 | fail("parseModelHistory failed"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp: In function ‘void test_RDFAnnotationV4_modelWithHistoryAndCVTerms_31_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestRDFAnnotationVCard4.cpp:478:10: warning: too many arguments for format [-Wformat-extra-args] 478 | fail("parseModelHistory failed"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestSyncAnnotation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestSyncAnnotation.cpp.o -MF CMakeFiles/test_sbml_annotation.dir/TestSyncAnnotation.cpp.o.d -o CMakeFiles/test_sbml_annotation.dir/TestSyncAnnotation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestSyncAnnotation.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestSyncAnnotation.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestSyncAnnotation.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestValidation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestValidation.cpp.o -MF CMakeFiles/test_sbml_annotation.dir/TestValidation.cpp.o.d -o CMakeFiles/test_sbml_annotation.dir/TestValidation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestValidation.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestValidation.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestValidation.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 81%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCVTerms.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCVTerms.c.o -MF CMakeFiles/test_sbml_annotation.dir/TestCVTerms.c.o.d -o CMakeFiles/test_sbml_annotation.dir/TestCVTerms.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestCVTerms.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCVTerms_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestCVTerms_newSetters.c.o -MF CMakeFiles/test_sbml_annotation.dir/TestCVTerms_newSetters.c.o.d -o CMakeFiles/test_sbml_annotation.dir/TestCVTerms_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestCVTerms_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestDate_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common 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-Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestDate_newSetters.c.o -MF CMakeFiles/test_sbml_annotation.dir/TestDate_newSetters.c.o.d -o CMakeFiles/test_sbml_annotation.dir/TestDate_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestDate_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestModelCreator_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestModelCreator_newSetters.c.o -MF CMakeFiles/test_sbml_annotation.dir/TestModelCreator_newSetters.c.o.d -o CMakeFiles/test_sbml_annotation.dir/TestModelCreator_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestModelCreator_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestModelHistory.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestModelHistory_newSetters.c.o -MF CMakeFiles/test_sbml_annotation.dir/TestModelHistory_newSetters.c.o.d -o CMakeFiles/test_sbml_annotation.dir/TestModelHistory_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestModelHistory_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationC.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationC.c.o -MF CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationC.c.o.d -o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationC.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestRDFAnnotationC.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestRDFAnnotationC.c:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestRDFAnnotationC.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 82%] Building CXX object src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/annotation/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_annotation.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_annotation.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderReading.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderReading.cpp:5: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderReading.cpp:1: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderReading.cpp:8: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderReading.cpp:24: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 82%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestStyle.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Style.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestStyle.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestStyle.cpp:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestStyle.cpp:54: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestStyle.cpp: In function ‘void StyleTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestStyle.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)LocalStyle(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 82%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestText.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestText.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestText.cpp:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestText.cpp:54: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestText.cpp: In function ‘void TextTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestText.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)Text(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 82%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestTransformation.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Transformation.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestTransformation.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestTransformation.cpp:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestTransformation.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestTransformation.cpp: In function ‘void TransformationTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestTransformation.cpp:69:14: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("new(std::nothrow)Text(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 82%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestTransformation2D.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestTransformation2D.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestTransformation2D.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestTransformation2D.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestTransformation2D.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension/RenderExtension.h:60, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Transformation.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/Transformation2D.h:73, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestTransformation2D.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestTransformation2D.cpp:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestTransformation2D.cpp:54: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestTransformation2D.cpp: In function ‘void Transformation2DTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestTransformation2D.cpp:74:14: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("new(std::nothrow)Text(renderns) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 83%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_package_render.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 81%] Building CXX object src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o -MF CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o.d -o CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderWriting.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderWriting.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderWriting.cpp:47: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/extension/LayoutModelPlugin.h:63, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderWriting.cpp:55: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Curve.h:78, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test/TestRenderWriting.cpp:59: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 81%] Linking CXX executable test_render_validator cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_render_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/test_render_validator.dir/TestFile.cpp.o CMakeFiles/test_render_validator.dir/TestRenderConsistencyValidator.cpp.o CMakeFiles/test_render_validator.dir/TestValidator.cpp.o -o test_render_validator ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 83%] Built target test_render_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build.make src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/conversion/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build.make src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 83%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o -MF CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o.d -o CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestConversionOption.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestConversionOption.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestConversionOption.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 83%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestConversionProperties.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestConversionProperties.cpp.o -MF CMakeFiles/test_sbml_conversion.dir/TestConversionProperties.cpp.o.d -o CMakeFiles/test_sbml_conversion.dir/TestConversionProperties.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestConversionProperties.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 83%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestInferUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestInferUnitsConverter.cpp.o -MF CMakeFiles/test_sbml_conversion.dir/TestInferUnitsConverter.cpp.o.d -o CMakeFiles/test_sbml_conversion.dir/TestInferUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestInferUnitsConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestInferUnitsConverter.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestInferUnitsConverter.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 83%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestLevelVersionConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestLevelVersionConverter.cpp.o -MF CMakeFiles/test_sbml_conversion.dir/TestLevelVersionConverter.cpp.o.d -o CMakeFiles/test_sbml_conversion.dir/TestLevelVersionConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestLevelVersionConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestLevelVersionConverter.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestLevelVersionConverter.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 84%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestRateOfConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestRateOfConverter.cpp.o -MF CMakeFiles/test_sbml_conversion.dir/TestRateOfConverter.cpp.o.d -o CMakeFiles/test_sbml_conversion.dir/TestRateOfConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestRateOfConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestRateOfConverter.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestRateOfConverter.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 84%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o -MF CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o.d -o CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestSBMLConverterRegistry.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverter.h:67, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/SBMLConverterRegistry.h:70, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestSBMLConverterRegistry.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestSBMLConverterRegistry.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 84%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestSBMLRuleConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestSBMLRuleConverter.cpp.o -MF CMakeFiles/test_sbml_conversion.dir/TestSBMLRuleConverter.cpp.o.d -o CMakeFiles/test_sbml_conversion.dir/TestSBMLRuleConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestSBMLRuleConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestSBMLRuleConverter.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestSBMLRuleConverter.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 84%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o -MF CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o.d -o CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestStripPackageConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestStripPackageConverter.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestStripPackageConverter.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 84%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o -MF CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o.d -o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestUnitsConverter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestUnitsConverter.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestUnitsConverter.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 84%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o -MF CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o.d -o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestUnitsConverter2.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestUnitsConverter2.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestUnitsConverter2.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 84%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverterL2.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestUnitsConverterL2.cpp.o -MF CMakeFiles/test_sbml_conversion.dir/TestUnitsConverterL2.cpp.o.d -o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverterL2.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestUnitsConverterL2.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestUnitsConverterL2.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestUnitsConverterL2.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 84%] Building CXX object src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/conversion/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_conversion.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_conversion.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 82%] Linking CXX executable test_sbml_annotation cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/annotation/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_annotation.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/test_sbml_annotation.dir/TestCopyAndClone.cpp.o CMakeFiles/test_sbml_annotation.dir/TestL3ModelHistory.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotation2.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationMetaid.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationNestedCVTerms.cpp.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationVCard4.cpp.o CMakeFiles/test_sbml_annotation.dir/TestSyncAnnotation.cpp.o CMakeFiles/test_sbml_annotation.dir/TestValidation.cpp.o CMakeFiles/test_sbml_annotation.dir/TestCVTerms.c.o CMakeFiles/test_sbml_annotation.dir/TestCVTerms_newSetters.c.o CMakeFiles/test_sbml_annotation.dir/TestDate_newSetters.c.o CMakeFiles/test_sbml_annotation.dir/TestModelCreator_newSetters.c.o CMakeFiles/test_sbml_annotation.dir/TestModelHistory.c.o CMakeFiles/test_sbml_annotation.dir/TestModelHistory_newSetters.c.o CMakeFiles/test_sbml_annotation.dir/TestRDFAnnotationC.c.o CMakeFiles/test_sbml_annotation.dir/TestRunner.c.o -o test_sbml_annotation ../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lz -lxml2 /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 84%] Built target test_sbml_annotation make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build.make src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/extension/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build.make src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 84%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestPackage.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestPackage.cpp.o -MF CMakeFiles/test_sbml_extension.dir/TestPackage.cpp.o.d -o CMakeFiles/test_sbml_extension.dir/TestPackage.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestPackage.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtensionRegister.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestPackage.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/XMLError.h:349, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLError.h:466, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:304: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 84%] Building C object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/extension/test && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_extension.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_extension.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 84%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLDocumentPlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLDocumentPlugin.cpp.o -MF CMakeFiles/test_sbml_extension.dir/TestSBMLDocumentPlugin.cpp.o.d -o CMakeFiles/test_sbml_extension.dir/TestSBMLDocumentPlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestSBMLDocumentPlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestSBMLDocumentPlugin.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestSBMLDocumentPlugin.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 84%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtension.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtension.cpp.o -MF CMakeFiles/test_sbml_extension.dir/TestSBMLExtension.cpp.o.d -o CMakeFiles/test_sbml_extension.dir/TestSBMLExtension.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestSBMLExtension.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestSBMLExtension.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestSBMLExtension.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 85%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionNamespaces.cpp.o -MF CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionNamespaces.cpp.o.d -o CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestSBMLExtensionNamespaces.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestSBMLExtensionNamespaces.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestSBMLExtensionNamespaces.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 85%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionRegistry.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionRegistry.cpp.o -MF CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionRegistry.cpp.o.d -o CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionRegistry.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestSBMLExtensionRegistry.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestSBMLExtensionRegistry.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestSBMLExtensionRegistry.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 85%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBaseExtensionPoint.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBaseExtensionPoint.cpp.o -MF CMakeFiles/test_sbml_extension.dir/TestSBaseExtensionPoint.cpp.o.d -o CMakeFiles/test_sbml_extension.dir/TestSBaseExtensionPoint.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestSBaseExtensionPoint.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestSBaseExtensionPoint.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestSBaseExtensionPoint.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 85%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o -MF CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o.d -o CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestSBasePlugin.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestSBasePlugin.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestSBasePlugin.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 85%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o -MF CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o.d -o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestSBasePluginCreator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestSBasePluginCreator.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestSBasePluginCreator.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 85%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreatorBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreatorBase.cpp.o -MF CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreatorBase.cpp.o.d -o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreatorBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestSBasePluginCreatorBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBasePluginCreatorBase.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/SBMLExtension.h:143, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestSBasePluginCreatorBase.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestSBasePluginCreatorBase.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 85%] Building CXX object src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/extension/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o -MF CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o.d -o CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestUnknownPackage.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestUnknownPackage.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test/TestUnknownPackage.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 84%] Linking CXX executable test_sbml_conversion cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/conversion/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_conversion.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/test_sbml_conversion.dir/TestConversionOption.cpp.o CMakeFiles/test_sbml_conversion.dir/TestConversionProperties.cpp.o CMakeFiles/test_sbml_conversion.dir/TestInferUnitsConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestLevelVersionConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestRateOfConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestSBMLConverterRegistry.cpp.o CMakeFiles/test_sbml_conversion.dir/TestSBMLRuleConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestStripPackageConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter.cpp.o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverter2.cpp.o CMakeFiles/test_sbml_conversion.dir/TestUnitsConverterL2.cpp.o CMakeFiles/test_sbml_conversion.dir/TestRunner.c.o -o test_sbml_conversion ../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lz -lxml2 /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 85%] Built target test_sbml_conversion make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build.make src/sbml/math/test/CMakeFiles/test_sbml_math.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/math/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/math/test/CMakeFiles/test_sbml_math.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build.make src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 85%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestChildFunctions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestChildFunctions.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestChildFunctions.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestChildFunctions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestChildFunctions.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestChildFunctions.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestChildFunctions.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 85%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestGetValue.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestGetValue.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestGetValue.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestGetValue.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestGetValue.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestGetValue.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestGetValue.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 85%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestL3FormulaParser.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/L3Parser.h:46, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestL3FormulaParser.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestL3FormulaParser.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 85%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestReadFromFile1.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestReadFromFile1.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestReadFromFile1.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestReadFromFile1.cpp:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestReadFromFile1.cpp: In function ‘void test_read_MathML_1_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestReadFromFile1.cpp:103:10: warning: too many arguments for format [-Wformat-extra-args] 103 | fail("readSBML(\"mathML_1-invalid.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 86%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestReadFromFile2.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestReadFromFile2.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestReadFromFile2.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestReadFromFile2.cpp:54: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestReadFromFile2.cpp: In function ‘void test_read_MathML_2_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestReadFromFile2.cpp:83:10: warning: too many arguments for format [-Wformat-extra-args] 83 | fail("readSBML(\"mathML_2-invalid.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 86%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFileL3V2.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadFromFileL3V2.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestReadFromFileL3V2.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestReadFromFileL3V2.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestReadFromFileL3V2.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestReadFromFileL3V2.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestReadFromFileL3V2.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestReadFromFileL3V2.cpp:54: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestReadFromFileL3V2.cpp: In function ‘void test_read_MathML_L3V2_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestReadFromFileL3V2.cpp:96:10: warning: too many arguments for format [-Wformat-extra-args] 96 | fail("readSBML(\"L3V2Math.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 86%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestReadMathML.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestReadMathML.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestReadMathML.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestReadMathML.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestReadMathML.cpp:1539:13: warning: ‘test_element_implies’ defined but not used [-Wunused-variable] 1539 | START_TEST (test_element_implies) | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestReadMathML.cpp:1520:13: warning: ‘test_element_rem’ defined but not used [-Wunused-variable] 1520 | START_TEST (test_element_rem) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestReadMathML.cpp:1501:13: warning: ‘test_element_quotient’ defined but not used [-Wunused-variable] 1501 | START_TEST (test_element_quotient) | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestReadMathML.cpp:1482:13: warning: ‘test_element_min’ defined but not used [-Wunused-variable] 1482 | START_TEST (test_element_min) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestReadMathML.cpp:1463:13: warning: ‘test_element_max’ defined but not used [-Wunused-variable] 1463 | START_TEST (test_element_max) | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 86%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestValidASTNode.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestValidASTNode.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestValidASTNode.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestValidASTNode.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestValidASTNode.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestValidASTNode.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestValidASTNode.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestValidASTNode.cpp: In function ‘void test_ValidASTNode_Number_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestValidASTNode.cpp:174:7: warning: unused variable ‘i’ [-Wunused-variable] 174 | int i = n->addChild(d); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestValidASTNode.cpp: In function ‘void test_ValidASTNode_Name_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestValidASTNode.cpp:190:7: warning: unused variable ‘i’ [-Wunused-variable] 190 | int i = n->addChild(d); | ^ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 86%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestWriteMathML.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestWriteMathML.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestWriteMathML.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 86%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o -MF CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o.d -o CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestWriteMathMLFromAST.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestWriteMathMLFromAST.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestWriteMathMLFromAST.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 86%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestASTNode.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestASTNode.c.o -MF CMakeFiles/test_sbml_math.dir/TestASTNode.c.o.d -o CMakeFiles/test_sbml_math.dir/TestASTNode.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestASTNode.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestASTNode.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestASTNode.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestASTNode.c:55: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestASTNode.c: In function ‘void test_ASTNode_setName_1_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestASTNode.c:1513:10: warning: too many arguments for format [-Wformat-extra-args] 1513 | fail("ASTNode_setName(...) did not make a copy of name."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestASTNode.c:1521:10: warning: too many arguments for format [-Wformat-extra-args] 1521 | fail("ASTNode_setName(node, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 86%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o -MF CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o.d -o CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestFormulaFormatter.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestFormulaFormatter.c:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestFormulaFormatter.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 86%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaParser.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaParser.c.o -MF CMakeFiles/test_sbml_math.dir/TestFormulaParser.c.o.d -o CMakeFiles/test_sbml_math.dir/TestFormulaParser.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestFormulaParser.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestFormulaParser.c:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestFormulaParser.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 86%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaTokenizer.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestFormulaTokenizer.c.o -MF CMakeFiles/test_sbml_math.dir/TestFormulaTokenizer.c.o.d -o CMakeFiles/test_sbml_math.dir/TestFormulaTokenizer.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestFormulaTokenizer.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 86%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestL3FormulaFormatter.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestL3FormulaFormatter.c.o -MF CMakeFiles/test_sbml_math.dir/TestL3FormulaFormatter.c.o.d -o CMakeFiles/test_sbml_math.dir/TestL3FormulaFormatter.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestL3FormulaFormatter.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/L3FormulaFormatter.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestL3FormulaFormatter.c:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestL3FormulaFormatter.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 86%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestL3FormulaParserC.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestL3FormulaParserC.c.o -MF CMakeFiles/test_sbml_math.dir/TestL3FormulaParserC.c.o.d -o CMakeFiles/test_sbml_math.dir/TestL3FormulaParserC.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestL3FormulaParserC.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestL3FormulaParserC.c:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestL3FormulaParserC.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 87%] Building CXX object src/sbml/math/test/CMakeFiles/test_sbml_math.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/math/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 85%] Linking CXX executable test_sbml_extension cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/extension/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_extension.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/test_sbml_extension.dir/TestPackage.cpp.o CMakeFiles/test_sbml_extension.dir/TestRunner.c.o CMakeFiles/test_sbml_extension.dir/TestSBMLDocumentPlugin.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBMLExtension.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionNamespaces.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBMLExtensionRegistry.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBaseExtensionPoint.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBasePlugin.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreator.cpp.o CMakeFiles/test_sbml_extension.dir/TestSBasePluginCreatorBase.cpp.o CMakeFiles/test_sbml_extension.dir/TestUnknownPackage.cpp.o -o test_sbml_extension ../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 87%] Built target test_sbml_extension make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test/CMakeFiles/test_sbml_sbml.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 83%] Linking CXX executable test_sbml_package_render cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_package_render.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/test_sbml_package_render.dir/TestColorDefinition.cpp.o CMakeFiles/test_sbml_package_render.dir/TestEllipse.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGlobalRenderInformation.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGlobalStyle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGradientBase.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGradientStop.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive1D.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGraphicalPrimitive2D.cpp.o CMakeFiles/test_sbml_package_render.dir/TestGroup.cpp.o CMakeFiles/test_sbml_package_render.dir/TestImage.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLineEnding.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLinearGradient.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLocalRenderInformation.cpp.o CMakeFiles/test_sbml_package_render.dir/TestLocalStyle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestPolygon.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRadialGradient.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRectangle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRelAbsVector.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderCubicBezier.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderCurve.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderExtension.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderInformationBase.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderPoint.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderReading.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRenderWriting.cpp.o CMakeFiles/test_sbml_package_render.dir/TestStyle.cpp.o CMakeFiles/test_sbml_package_render.dir/TestText.cpp.o CMakeFiles/test_sbml_package_render.dir/TestTransformation.cpp.o CMakeFiles/test_sbml_package_render.dir/TestTransformation2D.cpp.o CMakeFiles/test_sbml_package_render.dir/TestRunner.c.o -o test_sbml_package_render ../../../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lz -lxml2 /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 87%] Built target test_sbml_package_render make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build.make src/sbml/units/test/CMakeFiles/test_sbml_units.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/units/test 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestCalculatedUnitDefinitions.cpp.o -MF CMakeFiles/test_sbml_units.dir/TestCalculatedUnitDefinitions.cpp.o.d -o CMakeFiles/test_sbml_units.dir/TestCalculatedUnitDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestCalculatedUnitDefinitions.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestCalculatedUnitDefinitions.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestCalculatedUnitDefinitions.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 87%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions.cpp.o -MF CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions.cpp.o.d -o CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestDerivedUnitDefinitions.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestDerivedUnitDefinitions.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestDerivedUnitDefinitions.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAncestor.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAncestor.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestAncestor.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestAncestor.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestAncestor.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.h:482, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestAncestor.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestAncestor.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 87%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions_undefined.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions_undefined.cpp.o -MF CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions_undefined.cpp.o.d -o CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions_undefined.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestDerivedUnitDefinitions_undefined.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestDerivedUnitDefinitions_undefined.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestDerivedUnitDefinitions_undefined.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 88%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData.cpp.o -MF CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData.cpp.o.d -o CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestFormulaUnitsData.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestFormulaUnitsData.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestFormulaUnitsData.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 87%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAttributeFunctions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAttributeFunctions.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestAttributeFunctions.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestAttributeFunctions.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestAttributeFunctions.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestAttributeFunctions.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestAttributeFunctions.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestAttributeFunctions.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestAttributeFunctions.cpp: In function ‘void AttributeTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestAttributeFunctions.cpp:77:10: warning: too many arguments for format [-Wformat-extra-args] 77 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestAttributeFunctions.cpp: At global scope: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestAttributeFunctions.cpp:1353:13: warning: ‘test_Attributes_Trigger_Id’ defined but not used [-Wunused-variable] 1353 | START_TEST (test_Attributes_Trigger_Id) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConsistencyChecks.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConsistencyChecks.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestConsistencyChecks.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestConsistencyChecks.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestConsistencyChecks.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestConsistencyChecks.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestConsistencyChecks.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestConsistencyChecks.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestConsistencyChecks.cpp: In function ‘void test_consistency_checks_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestConsistencyChecks.cpp:73:10: warning: too many arguments for format [-Wformat-extra-args] 73 | fail("readSBML(\"inconsistent.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestConsistencyChecks.cpp: In function ‘void test_strict_unit_consistency_checks_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestConsistencyChecks.cpp:138:10: warning: too many arguments for format [-Wformat-extra-args] 138 | fail("readSBML(\"l3v1-units.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 88%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData_map.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData_map.cpp.o -MF CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData_map.cpp.o.d -o CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData_map.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestFormulaUnitsData_map.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestFormulaUnitsData_map.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestFormulaUnitsData_map.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 88%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter.cpp.o -MF CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter.cpp.o.d -o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestUnitFormulaFormatter.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestUnitFormulaFormatter.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestUnitFormulaFormatter.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCopyAndClone.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestCopyAndClone.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCopyAndClone.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.h:482, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCopyAndClone.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCopyAndClone.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 88%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o -MF CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o.d -o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestUnitFormulaFormatter1.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestUnitFormulaFormatter1.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestUnitFormulaFormatter1.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestGetMultipleObjects.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestGetMultipleObjects.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestGetMultipleObjects.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestGetMultipleObjects.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestGetMultipleObjects.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestGetMultipleObjects.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestGetMultipleObjects.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestGetMultipleObjects.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestGetMultipleObjects.cpp: In function ‘void test_GetMultipleObjects_getId_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestGetMultipleObjects.cpp:74:10: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestGetMultipleObjects.cpp: In function ‘void test_GetMultipleObjects_getMetaId_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestGetMultipleObjects.cpp:169:10: warning: too many arguments for format [-Wformat-extra-args] 169 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestGetMultipleObjects.cpp: In function ‘void test_GetMultipleObjects_noLocalParameters_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestGetMultipleObjects.cpp:350:10: warning: too many arguments for format [-Wformat-extra-args] 350 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestGetMultipleObjects.cpp: In function ‘void test_GetMultipleObjects_noUnits_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestGetMultipleObjects.cpp:380:10: warning: too many arguments for format [-Wformat-extra-args] 380 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestGetMultipleObjects.cpp: In function ‘void test_GetMultipleObjects_noAssignments_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestGetMultipleObjects.cpp:408:10: warning: too many arguments for format [-Wformat-extra-args] 408 | fail("readSBML(\"assignments-invalid.xml\") returned an empty model."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestGetMultipleObjects.cpp: In function ‘void test_GetMultipleObjects_allElements_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestGetMultipleObjects.cpp:454:10: warning: too many arguments for format [-Wformat-extra-args] 454 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestGetMultipleObjects.cpp: In function ‘void test_GetMultipleObjects_withFilter_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestGetMultipleObjects.cpp:490:10: warning: too many arguments for format [-Wformat-extra-args] 490 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 88%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter2.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter2.cpp.o -MF CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter2.cpp.o.d -o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter2.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestUnitFormulaFormatter2.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestUnitFormulaFormatter2.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestUnitFormulaFormatter2.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 88%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter3.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter3.cpp.o -MF CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter3.cpp.o.d -o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter3.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestUnitFormulaFormatter3.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestUnitFormulaFormatter3.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestUnitFormulaFormatter3.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInternalConsistencyChecks.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInternalConsistencyChecks.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestInternalConsistencyChecks.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestInternalConsistencyChecks.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestInternalConsistencyChecks.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestInternalConsistencyChecks.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestInternalConsistencyChecks.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 88%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUtilsUnit.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUtilsUnit.cpp.o -MF CMakeFiles/test_sbml_units.dir/TestUtilsUnit.cpp.o.d -o CMakeFiles/test_sbml_units.dir/TestUtilsUnit.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestUtilsUnit.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Unit.h:222, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestUtilsUnit.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestUtilsUnit.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestLevelCompatibility.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestLevelCompatibility.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestLevelCompatibility.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestLevelCompatibility.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestLevelCompatibility.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestLevelCompatibility.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestLevelCompatibility.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestLevelCompatibility.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestLevelCompatibility.cpp: In function ‘void test_LevelCompatibility_unit_fails_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestLevelCompatibility.cpp:73:10: warning: too many arguments for format [-Wformat-extra-args] 73 | fail("readSBML(\"inconsistent-l2v1-units.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestLevelCompatibility.cpp: In function ‘void test_LevelCompatibility_unit_warnings_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestLevelCompatibility.cpp:107:10: warning: too many arguments for format [-Wformat-extra-args] 107 | fail("readSBML(\"inconsistent-l2v1-units-2.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestLevelCompatibility.cpp: In function ‘void test_LevelCompatibility_unit_fails_l1_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestLevelCompatibility.cpp:138:10: warning: too many arguments for format [-Wformat-extra-args] 138 | fail("readSBML(\"inconsistent-l2v1-units.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestLevelCompatibility.cpp: In function ‘void test_LevelCompatibility_unit_warnings_l1_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestLevelCompatibility.cpp:172:10: warning: too many arguments for format [-Wformat-extra-args] 172 | fail("readSBML(\"inconsistent-l2v1-units-2.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestLevelCompatibility.cpp: In function ‘void test_LevelCompatibility_unit_fails_l2v2_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestLevelCompatibility.cpp:203:10: warning: too many arguments for format [-Wformat-extra-args] 203 | fail("readSBML(\"inconsistent-l2v1-units.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestLevelCompatibility.cpp: In function ‘void test_LevelCompatibility_unit_fails_l2v3_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestLevelCompatibility.cpp:237:10: warning: too many arguments for format [-Wformat-extra-args] 237 | fail("readSBML(\"inconsistent-l2v1-units.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 88%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUtilsUnitDefinition.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestUtilsUnitDefinition.cpp.o -MF CMakeFiles/test_sbml_units.dir/TestUtilsUnitDefinition.cpp.o.d -o CMakeFiles/test_sbml_units.dir/TestUtilsUnitDefinition.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestUtilsUnitDefinition.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Unit.h:222, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestUtilsUnitDefinition.cpp:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestUtilsUnitDefinition.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 88%] Building CXX object src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/units/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/units/test/CMakeFiles/test_sbml_units.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_units.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_units.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile5.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile5.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFile5.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile5.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile5.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile5.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile5.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile5.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile5.cpp: In function ‘void test_read_l2v1_assignment_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile5.cpp:91:10: warning: too many arguments for format [-Wformat-extra-args] 91 | fail("readSBML(\"l2v1-assignment.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile6.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile6.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFile6.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile6.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile6.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile6.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile6.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile6.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile6.cpp: In function ‘void test_read_l2v2_newComponents_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile6.cpp:96:10: warning: too many arguments for format [-Wformat-extra-args] 96 | fail("readSBML(\"l2v2-newComponents.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile7.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile7.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFile7.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile7.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile7.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile7.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile7.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile7.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile7.cpp: In function ‘void test_read_l2v3_all_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile7.cpp:111:10: warning: too many arguments for format [-Wformat-extra-args] 111 | fail("readSBML(\"l2v3-all.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 88%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile8.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile8.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFile8.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile8.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile8.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile8.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile8.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile8.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile8.cpp: In function ‘void test_read_l2v4_new_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile8.cpp:80:10: warning: too many arguments for format [-Wformat-extra-args] 80 | fail("readSBML(\"l2v4-new.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile9.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile9.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFile9.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile9.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile9.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile9.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile9.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile9.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile9.cpp: In function ‘void test_read_l3v1_new_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile9.cpp:87:10: warning: too many arguments for format [-Wformat-extra-args] 87 | fail("readSBML(\"l3v1-new-invalid.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL2V5.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL2V5.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL2V5.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL2V5.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL2V5.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL2V5.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL2V5.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL2V5.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL2V5.cpp: In function ‘void test_read_l2v5_all_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL2V5.cpp:111:10: warning: too many arguments for format [-Wformat-extra-args] 111 | fail("readSBML(\"l2v5-all.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL2V5.cpp: In function ‘void test_echo_l2v5_all_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL2V5.cpp:590:10: warning: too many arguments for format [-Wformat-extra-args] 590 | fail("readSBML(\"l2v5-all.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2.cpp: In function ‘void test_read_l3v2_all_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2.cpp:102:10: warning: too many arguments for format [-Wformat-extra-args] 102 | fail("readSBML(\"l3v2-all.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2.cpp: In function ‘void test_echo_l3v2_all_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2.cpp:585:10: warning: too many arguments for format [-Wformat-extra-args] 585 | fail("readSBML(\"l3v2-all.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_1.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_1.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_1.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_1.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_1.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_1.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_1.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_1.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_1.cpp: In function ‘void test_read_l3v2_no_model_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_1.cpp:87:10: warning: too many arguments for format [-Wformat-extra-args] 87 | fail("readSBML(\"l3v2-no-model.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_1.cpp: In function ‘void test_echo_l3v2_no_model_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_1.cpp:124:10: warning: too many arguments for format [-Wformat-extra-args] 124 | fail("readSBML(\"l3v2-no-model.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_2.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_2.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_2.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_2.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_2.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_2.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_2.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_2.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_2.cpp: In function ‘void test_read_l3v2_empty_lo_1_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_2.cpp:85:10: warning: too many arguments for format [-Wformat-extra-args] 85 | fail("readSBML(\"l3v2-empty-lo-1.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_2.cpp: In function ‘void test_echo_l3v2_empty_lo_1_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_2.cpp:209:10: warning: too many arguments for format [-Wformat-extra-args] 209 | fail("readSBML(\"l3v2-empty-lo-1.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_2.cpp: In function ‘void test_echo_l3v2_empty_lo_3_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_2.cpp:330:10: warning: too many arguments for format [-Wformat-extra-args] 330 | fail("readSBML(\"l3v2-empty-lo-3.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_3.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_3.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_3.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_3.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_3.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_3.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_3.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_3.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_3.cpp: In function ‘void test_read_l3v2_empty_lo_2_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_3.cpp:86:10: warning: too many arguments for format [-Wformat-extra-args] 86 | fail("readSBML(\"l3v2-empty-lo-2.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_3.cpp: In function ‘void test_echo_l3v2_empty_lo_2_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_3.cpp:245:10: warning: too many arguments for format [-Wformat-extra-args] 245 | fail("readSBML(\"l3v2-empty-lo-2.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_4.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_4.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_4.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_4.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_4.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_4.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_4.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_4.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_4.cpp: In function ‘void test_read_l3v2_empty_math_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_4.cpp:86:10: warning: too many arguments for format [-Wformat-extra-args] 86 | fail("readSBML(\"l3v2-empty-lo-3.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_4.cpp: In function ‘void test_echo_l3v2_empty_math_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_4.cpp:180:10: warning: too many arguments for format [-Wformat-extra-args] 180 | fail("readSBML(\"l3v2-empty-math.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_5.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_5.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_5.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_5.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_5.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_5.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_5.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_5.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_5.cpp: In function ‘void test_read_l3v2_empty_event_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_5.cpp:86:10: warning: too many arguments for format [-Wformat-extra-args] 86 | fail("readSBML(\"l3v2-empty-event.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_5.cpp: In function ‘void test_echo_l3v2_empty_event_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_5.cpp:173:10: warning: too many arguments for format [-Wformat-extra-args] 173 | fail("readSBML(\"l3v2-empty-event.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_6.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_6.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_6.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFileL3V2_6.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_6.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_6.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_6.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_6.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_6.cpp: In function ‘void test_read_l3v2_empty_event2_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_6.cpp:86:10: warning: too many arguments for format [-Wformat-extra-args] 86 | fail("readSBML(\"l3v2-empty-event2.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_6.cpp: In function ‘void test_echo_l3v2_empty_event2_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFileL3V2_6.cpp:150:10: warning: too many arguments for format [-Wformat-extra-args] 150 | fail("readSBML(\"l3v2-empty-event2.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadSBML.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadSBML.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadSBML.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadSBML.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadSBML.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadSBML.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadSBML.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRemoveFromParent.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRemoveFromParent.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestRemoveFromParent.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestRemoveFromParent.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRemoveFromParent.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRemoveFromParent.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRemoveFromParent.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRemoveFromParent.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRemoveFromParent.cpp: In function ‘void test_RemoveFromParent_successfulRemoves_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRemoveFromParent.cpp:73:10: warning: too many arguments for format [-Wformat-extra-args] 73 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRemoveFromParent.cpp: In function ‘void test_RemoveFromParent_alreadyRemoved_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRemoveFromParent.cpp:338:10: warning: too many arguments for format [-Wformat-extra-args] 338 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 89%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRenameIDs.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRenameIDs.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestRenameIDs.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestRenameIDs.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRenameIDs.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRenameIDs.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRenameIDs.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRenameIDs.cpp:48: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRenameIDs.cpp: In function ‘void test_RenameIDs_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRenameIDs.cpp:73:10: warning: too many arguments for format [-Wformat-extra-args] 73 | fail("readSBML(\"multiple-ids.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRequiredAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRequiredAttributes.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestRequiredAttributes.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestRequiredAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRequiredAttributes.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.h:482, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRequiredAttributes.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRequiredAttributes.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRequiredElements.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRequiredElements.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestRequiredElements.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestRequiredElements.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRequiredElements.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.h:482, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRequiredElements.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRequiredElements.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConstructorException.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConstructorException.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBMLConstructorException.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBMLConstructorException.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLConstructorException.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.h:482, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLConstructorException.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLConstructorException.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertFromL3V2.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertFromL3V2.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertFromL3V2.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertFromL3V2.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLConvertFromL3V2.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLConvertFromL3V2.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLConvertFromL3V2.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertStrict.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertStrict.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertStrict.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBMLConvertStrict.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLConvertStrict.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLConvertStrict.cpp:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLConvertStrict.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLError.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLError.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBMLError.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBMLError.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLError.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLNamespaces.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLNamespaces.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBMLNamespaces.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBMLNamespaces.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLNamespaces.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLParentObject.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLParentObject.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBMLParentObject.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBMLParentObject.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLParentObject.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.h:482, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLParentObject.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLParentObject.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLTransforms.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLTransforms.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBMLTransforms.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBMLTransforms.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLTransforms.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLTransforms.cpp:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLTransforms.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLTransforms.cpp:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLTransforms.cpp: In function ‘void test_SBMLTransforms_replaceFD_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLTransforms.cpp:79:10: warning: too many arguments for format [-Wformat-extra-args] 79 | fail("readSBML(\"multiple-functions.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLTransforms.cpp: In function ‘void test_SBMLTransforms_replaceIA_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLTransforms.cpp:591:10: warning: too many arguments for format [-Wformat-extra-args] 591 | fail("readSBML(\"initialAssignments.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLTransforms.cpp: In function ‘void test_SBMLTransforms_replaceIA_species_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLTransforms.cpp:745:10: warning: too many arguments for format [-Wformat-extra-args] 745 | fail("readSBML(\"initialAssignments_species.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLTransforms.cpp: In function ‘void test_SBMLTransforms_evaluateL3V2ASTWithModel_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLTransforms.cpp:815:10: warning: too many arguments for format [-Wformat-extra-args] 815 | fail("readSBML(\"multiple-functions.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLTransforms.cpp: In function ‘void test_SBMLTransforms_replaceIAWithFD_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLTransforms.cpp:852:10: warning: too many arguments for format [-Wformat-extra-args] 852 | fail("readSBML(\"initialAssignments.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLTransforms.cpp: At global scope: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLTransforms.cpp:838:12: warning: ‘test_SBMLTransforms_replaceIAWithFD’ defined but not used [-Wunused-variable] 838 | START_TEST(test_SBMLTransforms_replaceIAWithFD) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLValidators.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLValidators.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBMLValidators.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBMLValidators.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLValidators.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLValidators.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLValidators.cpp:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBase.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBase.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBase.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBase.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase.cpp:54: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase.cpp: In function ‘void SBaseTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase.cpp:80:10: warning: too many arguments for format [-Wformat-extra-args] 80 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase.cpp: In function ‘void test_SBase_setMetaId_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase.cpp:105:10: warning: too many arguments for format [-Wformat-extra-args] 105 | fail("SBase_setMetaId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase.cpp:117:10: warning: too many arguments for format [-Wformat-extra-args] 117 | fail("SBase_setMetaId(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase.cpp: In function ‘void test_SBase_setNotes_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase.cpp:136:10: warning: too many arguments for format [-Wformat-extra-args] 136 | fail("SBase_setNotes(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase.cpp:156:10: warning: too many arguments for format [-Wformat-extra-args] 156 | fail("SBase_setNotes(c, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase.cpp: In function ‘void test_SBase_setAnnotation_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase.cpp:222:10: warning: too many arguments for format [-Wformat-extra-args] 222 | fail("SBase_setAnnotation(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase.cpp:234:10: warning: too many arguments for format [-Wformat-extra-args] 234 | fail("SBase_setAnnotation(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase.cpp: In function ‘void test_SBase_setNotesString_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase.cpp:442:10: warning: too many arguments for format [-Wformat-extra-args] 442 | fail("SBase_setNotesString(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase.cpp:467:10: warning: too many arguments for format [-Wformat-extra-args] 467 | fail("SBase_getNotesString(c, "") did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase.cpp:477:10: warning: too many arguments for format [-Wformat-extra-args] 477 | fail("SBase_setNotesString(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase.cpp: In function ‘void test_SBase_setNotesString_l3_addMarkup_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase.cpp:518:10: warning: too many arguments for format [-Wformat-extra-args] 518 | fail("SBase_setNotesString(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase.cpp:538:10: warning: too many arguments for format [-Wformat-extra-args] 538 | fail("SBase_setNotesString(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase.cpp: In function ‘void test_SBase_setAnnotationString_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase.cpp:567:10: warning: too many arguments for format [-Wformat-extra-args] 567 | fail("SBase_setAnnotationString(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase.cpp:591:10: warning: too many arguments for format [-Wformat-extra-args] 591 | fail("SBase_getAnnotationString(S, "") did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase.cpp:601:10: warning: too many arguments for format [-Wformat-extra-args] 601 | fail("SBase_setAnnotationString(...) did not make a copy of node."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 90%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBaseIdName.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBaseIdName.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBaseIdName.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBaseIdName.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp:55: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp: In function ‘void SBaseIdNameTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp:90:10: warning: too many arguments for format [-Wformat-extra-args] 90 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp:97:10: warning: too many arguments for format [-Wformat-extra-args] 97 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp:104:10: warning: too many arguments for format [-Wformat-extra-args] 104 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp:111:10: warning: too many arguments for format [-Wformat-extra-args] 111 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp:118:10: warning: too many arguments for format [-Wformat-extra-args] 118 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp:125:10: warning: too many arguments for format [-Wformat-extra-args] 125 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp:132:10: warning: too many arguments for format [-Wformat-extra-args] 132 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp:139:10: warning: too many arguments for format [-Wformat-extra-args] 139 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp:146:10: warning: too many arguments for format [-Wformat-extra-args] 146 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp:153:10: warning: too many arguments for format [-Wformat-extra-args] 153 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp: In function ‘void test_SBase_setName_1_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp:232:10: warning: too many arguments for format [-Wformat-extra-args] 232 | fail("SBase_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp:244:10: warning: too many arguments for format [-Wformat-extra-args] 244 | fail("SBase_setName(S31, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp: In function ‘void test_SBase_setName_2_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp:308:10: warning: too many arguments for format [-Wformat-extra-args] 308 | fail("SBase_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp:320:10: warning: too many arguments for format [-Wformat-extra-args] 320 | fail("SBase_setName(S32, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp: In function ‘void test_SBase_setName_3_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp:384:10: warning: too many arguments for format [-Wformat-extra-args] 384 | fail("SBase_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp:396:10: warning: too many arguments for format [-Wformat-extra-args] 396 | fail("SBase_setName(E31, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp: In function ‘void test_SBase_setName_4_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp:460:10: warning: too many arguments for format [-Wformat-extra-args] 460 | fail("SBase_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp:472:10: warning: too many arguments for format [-Wformat-extra-args] 472 | fail("SBase_setName(E32, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp: In function ‘void test_SBase_setName_6_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp:595:10: warning: too many arguments for format [-Wformat-extra-args] 595 | fail("SBase_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp:607:10: warning: too many arguments for format [-Wformat-extra-args] 607 | fail("SBase_setName(U32, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp: In function ‘void test_SBase_setName_8_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp:773:10: warning: too many arguments for format [-Wformat-extra-args] 773 | fail("SBase_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/Tmake[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' estSBaseIdName.cpp:785:10: warning: too many arguments for format [-Wformat-extra-args] 785 | fail("SBase_setName(AR32, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp: In function ‘void test_SBase_setName_10_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp:978:10: warning: too many arguments for format [-Wformat-extra-args] 978 | fail("SBase_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBaseIdName.cpp:990:10: warning: too many arguments for format [-Wformat-extra-args] 990 | fail("SBase_setName(EA32, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBase_newSetters.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBase_newSetters.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBase_newSetters.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBase_newSetters.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase_newSetters.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase_newSetters.cpp:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase_newSetters.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase_newSetters.cpp:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase_newSetters.cpp: In function ‘void SBaseTest_setup1()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBase_newSetters.cpp:79:10: warning: too many arguments for format [-Wformat-extra-args] 79 | fail("'new(std::nothrow) SBase;' returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestWriteL3SBML.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestWriteL3SBML.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestWriteL3SBML.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestWriteL3SBML.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestWriteL3SBML.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestWriteL3SBML.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestWriteL3SBML.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestWriteL3V2SBML.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestWriteL3V2SBML.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestWriteL3V2SBML.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestWriteL3V2SBML.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestWriteL3V2SBML.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestWriteL3V2SBML.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestWriteL3V2SBML.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestWriteSBML.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestWriteSBML.cpp.o -MF CMakeFiles/test_sbml_sbml.dir/TestWriteSBML.cpp.o.d -o CMakeFiles/test_sbml_sbml.dir/TestWriteSBML.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestWriteSBML.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestWriteSBML.cpp:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestWriteSBML.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAlgebraicRule.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAlgebraicRule.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestAlgebraicRule.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestAlgebraicRule.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestAlgebraicRule.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestAlgebraicRule.c:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestAlgebraicRule.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestAlgebraicRule.c:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestAlgebraicRule.c: In function ‘void AlgebraicRuleTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestAlgebraicRule.c:73:10: warning: too many arguments for format [-Wformat-extra-args] 73 | fail("AlgebraicRule_createAlgebraic() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAssignmentRule.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestAssignmentRule.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestAssignmentRule.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestAssignmentRule.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestAssignmentRule.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestAssignmentRule.c:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestAssignmentRule.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestAssignmentRule.c:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestAssignmentRule.c: In function ‘void AssignmentRuleTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestAssignmentRule.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("AssignmentRule_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestAssignmentRule.c: In function ‘void test_AssignmentRule_setVariable_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestAssignmentRule.c:118:10: warning: too many arguments for format [-Wformat-extra-args] 118 | fail("AssignmentRule_setVariable(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestAssignmentRule.c:130:10: warning: too many arguments for format [-Wformat-extra-args] 130 | fail("AssignmentRule_setVariable(AR, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestAssignmentRule.c: In function ‘void test_AssignmentRule_unsetVariable_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestAssignmentRule.c:151:10: warning: too many arguments for format [-Wformat-extra-args] 151 | fail("AssignmentRule_unsetVariable(AR) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartment.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartment.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestCompartment.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestCompartment.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartment.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.h:482, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartment.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartment.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartment.c:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartment.c: In function ‘void CompartmentTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartment.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("Compartment_create(2, 4) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartment.c: In function ‘void test_Compartment_setId_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartment.c:184:10: warning: too many arguments for format [-Wformat-extra-args] 184 | fail("Compartment_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartment.c:196:10: warning: too many arguments for format [-Wformat-extra-args] 196 | fail("Compartment_setId(C, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartment.c: In function ‘void test_Compartment_setName_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartment.c:214:10: warning: too many arguments for format [-Wformat-extra-args] 214 | fail("Compartment_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartment.c:226:10: warning: too many arguments for format [-Wformat-extra-args] 226 | fail("Compartment_setName(C, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartment.c: In function ‘void test_Compartment_setUnits_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartment.c:244:10: warning: too many arguments for format [-Wformat-extra-args] 244 | fail("Compartment_setUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartment.c:256:10: warning: too many arguments for format [-Wformat-extra-args] 256 | fail("Compartment_setUnits(C, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartment.c: In function ‘void test_Compartment_setOutside_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartment.c:274:10: warning: too many arguments for format [-Wformat-extra-args] 274 | fail("Compartment_setOutside(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartment.c:286:10: warning: too many arguments for format [-Wformat-extra-args] 286 | fail("Compartment_setOutside(C, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentType.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentType.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestCompartmentType.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestCompartmentType.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartmentType.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/CompartmentType.h:98, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartmentType.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartmentType.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartmentType.c:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartmentType.c: In function ‘void CompartmentTypeTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartmentType.c:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("CompartmentType_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartmentType.c: In function ‘void test_CompartmentType_setId_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartmentType.c:138:10: warning: too many arguments for format [-Wformat-extra-args] 138 | fail("CompartmentType_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartmentType.c:150:10: warning: too many arguments for format [-Wformat-extra-args] 150 | fail("CompartmentType_setId(CT, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartmentType.c: In function ‘void test_CompartmentType_setName_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartmentType.c:168:10: warning: too many arguments for format [-Wformat-extra-args] 168 | fail("CompartmentType_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartmentType.c:180:10: warning: too many arguments for format [-Wformat-extra-args] 180 | fail("CompartmentType_setName(CT, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentType_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentType_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestCompartmentType_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestCompartmentType_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartmentType_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/CompartmentType.h:98, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartmentType_newSetters.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartmentType_newSetters.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartmentType_newSetters.c:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartmentType_newSetters.c: In function ‘void CompartmentTypeTest1_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartmentType_newSetters.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("CompartmentType_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentVolumeRule.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartmentVolumeRule.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestCompartmentVolumeRule.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestCompartmentVolumeRule.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartmentVolumeRule.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.h:150, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartmentVolumeRule.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartmentVolumeRule.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartmentVolumeRule.c:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartmentVolumeRule.c: In function ‘void CompartmentVolumeRuleTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartmentVolumeRule.c:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("Rule_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartmentVolumeRule.c: In function ‘void test_CompartmentVolumeRule_setCompartment_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartmentVolumeRule.c:149:11: warning: too many arguments for format [-Wformat-extra-args] 149 | fail( "Rule_setVariable(...)" | ^~~~~~~~~~~~~~~~~~~~~~~ 150 | " did not make a copy of string." ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartmentVolumeRule.c:164:11: warning: too many arguments for format [-Wformat-extra-args] 164 | fail( "Rule_setVariable(CVR, NULL)" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 | " did not clear string." ); | ~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartment_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestCompartment_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestCompartment_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestCompartment_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartment_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.h:482, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartment_newSetters.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartment_newSetters.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartment_newSetters.c:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartment_newSetters.c: In function ‘void CompartmentTest1_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestCompartment_newSetters.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("Compartment_create(2, 4) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConstraint.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConstraint.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestConstraint.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestConstraint.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestConstraint.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestConstraint.c:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestConstraint.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestConstraint.c:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestConstraint.c: In function ‘void ConstraintTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestConstraint.c:74:10: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("Constraint_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestConstraint.c: In function ‘void test_Constraint_setMath_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestConstraint.c:143:10: warning: too many arguments for format [-Wformat-extra-args] 143 | fail("Constraint_setMath(C, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestConstraint.c: In function ‘void test_Constraint_setMessage_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestConstraint.c:187:10: warning: too many arguments for format [-Wformat-extra-args] 187 | fail("Constraint_unsetMessage(C) did not clear XMLNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 91%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConstraint_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestConstraint_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestConstraint_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestConstraint_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestConstraint_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestConstraint_newSetters.c:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestConstraint_newSetters.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestConstraint_newSetters.c:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestConstraint_newSetters.c: In function ‘void ConstraintTest1_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestConstraint_newSetters.c:74:10: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("Constraint_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestConstraint_newSetters.c: In function ‘void test_Constraint_setMessage1_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestConstraint_newSetters.c:137:10: warning: too many arguments for format [-Wformat-extra-args] 137 | fail("Constraint_unsetMessage(C) did not clear XMLNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestConstraint_newSetters.c: In function ‘void test_Constraint_setMessage2_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestConstraint_newSetters.c:184:10: warning: too many arguments for format [-Wformat-extra-args] 184 | fail("Constraint_unsetMessage(C) did not clear XMLNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestDelay.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestDelay.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestDelay.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestDelay.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestDelay.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestDelay.c:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestDelay.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestDelay.c:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestDelay.c: In function ‘void DelayTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestDelay.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("Delay_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestDelay.c: In function ‘void test_Delay_setMath_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestDelay.c:166:10: warning: too many arguments for format [-Wformat-extra-args] 166 | fail("Delay_setMath(D, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEvent.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEvent.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestEvent.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestEvent.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEvent.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEvent.c:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEvent.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEvent.c:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEvent.c: In function ‘void EventTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEvent.c:74:10: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("Event_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEvent.c: In function ‘void test_Event_setId_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEvent.c:154:10: warning: too many arguments for format [-Wformat-extra-args] 154 | fail("Event_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEvent.c:166:10: warning: too many arguments for format [-Wformat-extra-args] 166 | fail("Event_setId(E, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEvent.c: In function ‘void test_Event_setName_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEvent.c:184:10: warning: too many arguments for format [-Wformat-extra-args] 184 | fail("Event_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEvent.c:196:10: warning: too many arguments for format [-Wformat-extra-args] 196 | fail("Event_setName(E, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEvent.c: In function ‘void test_Event_setTrigger_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEvent.c:216:10: warning: too many arguments for format [-Wformat-extra-args] 216 | fail("Event_setTrigger(...) did not make a copy of trigger."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEvent.c:228:10: warning: too many arguments for format [-Wformat-extra-args] 228 | fail("Event_setTrigger(E, NULL) did not clear trigger."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEvent.c: In function ‘void test_Event_setDelay_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEvent.c:250:10: warning: too many arguments for format [-Wformat-extra-args] 250 | fail("Event_setDelay(...) did not make a copy of Delay."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEvent.c:262:10: warning: too many arguments for format [-Wformat-extra-args] 262 | fail("Event_setDelay(E, NULL) did not clear Delay."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEvent.c: In function ‘void test_Event_setTimeUnits_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEvent.c:283:10: warning: too many arguments for format [-Wformat-extra-args] 283 | fail("Event_setTimeUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEvent.c:295:10: warning: too many arguments for format [-Wformat-extra-args] 295 | fail("Event_setTimeUnits(E, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEventAssignment.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEventAssignment.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestEventAssignment.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestEventAssignment.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEventAssignment.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEventAssignment.c:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEventAssignment.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEventAssignment.c:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEventAssignment.c: In function ‘void EventAssignmentTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEventAssignment.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("EventAssignment_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEventAssignment.c: In function ‘void test_EventAssignment_setVariable_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEventAssignment.c:138:10: warning: too many arguments for format [-Wformat-extra-args] 138 | fail("EventAssignment_setVariable(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEventAssignment.c:150:10: warning: too many arguments for format [-Wformat-extra-args] 150 | fail("EventAssignment_setVariable(EA, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEventAssignment.c: In function ‘void test_EventAssignment_unsetVariable_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEventAssignment.c:168:10: warning: too many arguments for format [-Wformat-extra-args] 168 | fail("EventAssignment_setVariable(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEventAssignment.c:176:10: warning: too many arguments for format [-Wformat-extra-args] 176 | fail("EventAssignment_unsetVariable(EA) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEventAssignment.c: In function ‘void test_EventAssignment_setMath_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEventAssignment.c:218:10: warning: too many arguments for format [-Wformat-extra-args] 218 | fail("EventAssignment_setMath(EA, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEventAssignment_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEventAssignment_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestEventAssignment_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestEventAssignment_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEventAssignment_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEventAssignment_newSetters.c:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEventAssignment_newSetters.c:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEventAssignment_newSetters.c:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEventAssignment_newSetters.c: In function ‘void EventAssignmentTest1_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEventAssignment_newSetters.c:75:10: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("EventAssignment_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 87%] Linking CXX executable test_sbml_math cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/math/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_math.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/test_sbml_math.dir/TestChildFunctions.cpp.o CMakeFiles/test_sbml_math.dir/TestGetValue.cpp.o CMakeFiles/test_sbml_math.dir/TestL3FormulaParser.cpp.o CMakeFiles/test_sbml_math.dir/TestReadFromFile1.cpp.o CMakeFiles/test_sbml_math.dir/TestReadFromFile2.cpp.o CMakeFiles/test_sbml_math.dir/TestReadFromFileL3V2.cpp.o CMakeFiles/test_sbml_math.dir/TestReadMathML.cpp.o CMakeFiles/test_sbml_math.dir/TestValidASTNode.cpp.o CMakeFiles/test_sbml_math.dir/TestWriteMathML.cpp.o CMakeFiles/test_sbml_math.dir/TestWriteMathMLFromAST.cpp.o CMakeFiles/test_sbml_math.dir/TestASTNode.c.o CMakeFiles/test_sbml_math.dir/TestFormulaFormatter.c.o CMakeFiles/test_sbml_math.dir/TestFormulaParser.c.o CMakeFiles/test_sbml_math.dir/TestFormulaTokenizer.c.o CMakeFiles/test_sbml_math.dir/TestL3FormulaFormatter.c.o CMakeFiles/test_sbml_math.dir/TestL3FormulaParserC.c.o CMakeFiles/test_sbml_math.dir/TestRunner.c.o -o test_sbml_math ../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lz -lxml2 /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 92%] Built target test_sbml_math make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build.make src/sbml/util/test/CMakeFiles/test_sbml_util.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/util/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/util/test/CMakeFiles/test_sbml_util.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build.make src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 92%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestList.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/util/test && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestList.c.o -MF CMakeFiles/test_sbml_util.dir/TestList.c.o.d -o CMakeFiles/test_sbml_util.dir/TestList.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test/TestList.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test/TestList.c:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test/TestList.c: In function ‘ListTest_setup’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test/TestList.c:58:10: warning: too many arguments for format [-Wformat-extra-args] 58 | fail("List_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 92%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestMemory.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/util/test && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestMemory.c.o -MF CMakeFiles/test_sbml_util.dir/TestMemory.c.o.d -o CMakeFiles/test_sbml_util.dir/TestMemory.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test/TestMemory.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test/TestMemory.c:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test/TestMemory.c: In function ‘test_memory_safe_malloc_fn’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test/TestMemory.c:64:10: warning: too many arguments for format [-Wformat-extra-args] 64 | fail("safe_malloc() should not return NULL"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 92%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/util/test && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_util.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_util.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEvent_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestEvent_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestEvent_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestEvent_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEvent_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEvent_newSetters.c:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEvent_newSetters.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEvent_newSetters.c:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEvent_newSetters.c: In function ‘void EventTest1_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestEvent_newSetters.c:75:10: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("Event_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 93%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestStack.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/util/test && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestStack.c.o -MF CMakeFiles/test_sbml_util.dir/TestStack.c.o.d -o CMakeFiles/test_sbml_util.dir/TestStack.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test/TestStack.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test/TestStack.c:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test/TestStack.c: In function ‘StackTest_setup’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test/TestStack.c:58:10: warning: too many arguments for format [-Wformat-extra-args] 58 | fail("Stack_create(10) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 92%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestFunctionDefinition.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestFunctionDefinition.c:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestFunctionDefinition.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestFunctionDefinition.c:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestFunctionDefinition.c: In function ‘void FunctionDefinitionTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestFunctionDefinition.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("FunctionDefinition_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestFunctionDefinition.c: In function ‘void test_FunctionDefinition_setId_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestFunctionDefinition.c:207:10: warning: too many arguments for format [-Wformat-extra-args] 207 | fail("FunctionDefinition_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestFunctionDefinition.c:219:10: warning: too many arguments for format [-Wformat-extra-args] 219 | fail("FunctionDefinition_setId(FD, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestFunctionDefinition.c: In function ‘void test_FunctionDefinition_setName_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestFunctionDefinition.c:237:10: warning: too many arguments for format [-Wformat-extra-args] 237 | fail("FunctionDefinition_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestFunctionDefinition.c:249:10: warning: too many arguments for format [-Wformat-extra-args] 249 | fail("FunctionDefinition_setName(FD, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestFunctionDefinition.c: In function ‘void test_FunctionDefinition_setMath_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestFunctionDefinition.c:291:10: warning: too many arguments for format [-Wformat-extra-args] 291 | fail("FunctionDefinition_setMath(FD, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 93%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/util/test && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o -MF CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o.d -o CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test/TestStringBuffer.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test/TestStringBuffer.c:42: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test/TestStringBuffer.c: In function ‘StringBufferTest_setup’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test/TestStringBuffer.c:59:10: warning: too many arguments for format [-Wformat-extra-args] 59 | fail("StringBuffer_create(10) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test/TestStringBuffer.c: In function ‘test_StringBuffer_toString_fn’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test/TestStringBuffer.c:357:10: warning: too many arguments for format [-Wformat-extra-args] 357 | fail("StringBuffer_toString() did not make a copy of its internal buffer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 93%] Building C object src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestUtil.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/util/test && /usr/bin/gcc -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/util/test/CMakeFiles/test_sbml_util.dir/TestUtil.c.o -MF CMakeFiles/test_sbml_util.dir/TestUtil.c.o.d -o CMakeFiles/test_sbml_util.dir/TestUtil.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test/TestUtil.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test/TestUtil.c:55: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test/TestUtil.c: In function ‘test_util_NaN_fn’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test/TestUtil.c:269:24: warning: too many arguments for format [-Wformat-extra-args] 269 | fail_unless( d != d, "util_NaN() did not return NaN."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test/TestUtil.c: In function ‘test_util_NegInf_fn’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test/TestUtil.c:281:10: warning: too many arguments for format [-Wformat-extra-args] 281 | fail("util_NegInf() did not return -Inf."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test/TestUtil.c: In function ‘test_util_PosInf_fn’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test/TestUtil.c:294:10: warning: too many arguments for format [-Wformat-extra-args] 294 | fail("util_PosInf() did not return +Inf."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test/TestUtil.c: In function ‘test_util_NegZero_fn’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test/TestUtil.c:305:23: warning: too many arguments for format [-Wformat-extra-args] 305 | fail_unless(d == 0, "util_NegZero() did not even return a zero!"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestFunctionDefinition_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestFunctionDefinition_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestFunctionDefinition_newSetters.c:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestFunctionDefinition_newSetters.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestFunctionDefinition_newSetters.c:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestFunctionDefinition_newSetters.c: In function ‘void FunctionDefinitionTest1_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestFunctionDefinition_newSetters.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("FunctionDefinition_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestInitialAssignment.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestInitialAssignment.c:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestInitialAssignment.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestInitialAssignment.c:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestInitialAssignment.c: In function ‘void InitialAssignmentTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestInitialAssignment.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("InitialAssignment_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestInitialAssignment.c: In function ‘void test_InitialAssignment_setSymbol_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestInitialAssignment.c:135:10: warning: too many arguments for format [-Wformat-extra-args] 135 | fail("InitialAssignment_setSymbol(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestInitialAssignment.c:147:10: warning: too many arguments for format [-Wformat-extra-args] 147 | fail("InitialAssignment_setSymbol(IA, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestInitialAssignment.c: In function ‘void test_InitialAssignment_unsetSymbol_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestInitialAssignment.c:165:10: warning: too many arguments for format [-Wformat-extra-args] 165 | fail("InitialAssignment_setSymbol(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestInitialAssignment.c:173:10: warning: too many arguments for format [-Wformat-extra-args] 173 | fail("InitialAssignment_unsetSymbol(IA, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestInitialAssignment.c: In function ‘void test_InitialAssignment_setMath_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestInitialAssignment.c:214:10: warning: too many arguments for format [-Wformat-extra-args] 214 | fail("InitialAssignment_setMath(IA, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 93%] Linking CXX executable test_sbml_util cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/util/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_util.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/test_sbml_util.dir/TestList.c.o CMakeFiles/test_sbml_util.dir/TestMemory.c.o CMakeFiles/test_sbml_util.dir/TestRunner.c.o CMakeFiles/test_sbml_util.dir/TestStack.c.o CMakeFiles/test_sbml_util.dir/TestStringBuffer.c.o CMakeFiles/test_sbml_util.dir/TestUtil.c.o -o test_sbml_util ../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lz -lxml2 /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 93%] Built target test_sbml_util make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestInitialAssignment_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestInitialAssignment_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestInitialAssignment_newSetters.c:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestInitialAssignment_newSetters.c:45: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestInitialAssignment_newSetters.c:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestInitialAssignment_newSetters.c: In function ‘void InitialAssignmentTest1_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestInitialAssignment_newSetters.c:75:10: warning: too many arguments for format [-Wformat-extra-args] 75 | fail("InitialAssignment_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestKineticLaw.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestKineticLaw.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestKineticLaw.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestKineticLaw.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestKineticLaw.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestKineticLaw.c:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestKineticLaw.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestKineticLaw.c:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestKineticLaw.c: In function ‘void KineticLawTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestKineticLaw.c:73:10: warning: too many arguments for format [-Wformat-extra-args] 73 | fail("KineticLaw_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestKineticLaw.c: In function ‘void test_KineticLaw_setFormula_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestKineticLaw.c:197:10: warning: too many arguments for format [-Wformat-extra-args] 197 | fail("KineticLaw_setFormula(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestKineticLaw.c:209:10: warning: too many arguments for format [-Wformat-extra-args] 209 | fail("KineticLaw_setFormula(kl, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestKineticLaw.c: In function ‘void test_KineticLaw_setMath_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestKineticLaw.c:288:11: warning: too many arguments for format [-Wformat-extra-args] 288 | fail( "KineticLaw_setMath(kl, NULL) did not clear ASTNode." ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 93%] Building CXX object src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestFile.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/test/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestFile.cpp.o -MF CMakeFiles/test_sbml_validator.dir/TestFile.cpp.o.d -o CMakeFiles/test_sbml_validator.dir/TestFile.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/test/TestFile.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestKineticLaw_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestKineticLaw_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestKineticLaw_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestKineticLaw_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestKineticLaw_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestKineticLaw_newSetters.c:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestKineticLaw_newSetters.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestKineticLaw_newSetters.c:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestKineticLaw_newSetters.c: In function ‘void KineticLawTest1_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestKineticLaw_newSetters.c:74:10: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("KineticLaw_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 93%] Building CXX object src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestConsistencyValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/test/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestConsistencyValidator.cpp.o -MF CMakeFiles/test_sbml_validator.dir/TestConsistencyValidator.cpp.o.d -o CMakeFiles/test_sbml_validator.dir/TestConsistencyValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/test/TestConsistencyValidator.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build.make src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/xml/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build.make src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 93%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Compartment.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Compartment.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3Compartment.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3Compartment.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Compartment.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Compartment.h:482, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Compartment.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Compartment.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Compartment.c:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Compartment.c: In function ‘void L3CompartmentTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Compartment.c:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("Compartment_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Compartment.c: In function ‘void test_L3_Compartment_id_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Compartment.c:130:10: warning: too many arguments for format [-Wformat-extra-args] 130 | fail("Compartment_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Compartment.c: In function ‘void test_L3_Compartment_name_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Compartment.c:150:10: warning: too many arguments for format [-Wformat-extra-args] 150 | fail("Compartment_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Compartment.c:159:10: warning: too many arguments for format [-Wformat-extra-args] 159 | fail("Compartment_unsetName(C) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Compartment.c: In function ‘void test_L3_Compartment_units_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Compartment.c:179:10: warning: too many arguments for format [-Wformat-extra-args] 179 | fail("Compartment_setUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Compartment.c:188:10: warning: too many arguments for format [-Wformat-extra-args] 188 | fail("Compartment_unsetUnits(C, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 93%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestCopyAndClone.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.19.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/test/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestCopyAndClone.cpp.o -MF CMakeFiles/test_sbml_xml.dir/TestCopyAndClone.cpp.o.d -o CMakeFiles/test_sbml_xml.dir/TestCopyAndClone.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/test/TestCopyAndClone.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 93%] Building CXX object src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/validator/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/test/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o -MF CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o.d -o CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/test/TestValidator.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/test/TestValidator.cpp:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/test/TestValidator.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/test/TestValidator.cpp:82:23: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 82 | struct HasId : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/test/TestValidator.cpp:94:22: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 94 | struct ToId : public unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Event.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Event.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3Event.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3Event.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Event.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Event.h:342, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Event.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Event.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Event.c:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Event.c: In function ‘void L3EventTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Event.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("Event_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Event.c: In function ‘void test_L3_Event_id_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Event.c:123:10: warning: too many arguments for format [-Wformat-extra-args] 123 | fail("Event_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Event.c:132:10: warning: too many arguments for format [-Wformat-extra-args] 132 | fail("Event_unsetId(E) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Event.c: In function ‘void test_L3_Event_name_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Event.c:152:10: warning: too many arguments for format [-Wformat-extra-args] 152 | fail("Event_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Event.c:161:10: warning: too many arguments for format [-Wformat-extra-args] 161 | fail("Event_unsetName(E) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 94%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLAttributes.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.19.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/test/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLAttributes.cpp.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLAttributes.cpp.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLAttributes.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/test/TestXMLAttributes.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3KineticLaw.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3KineticLaw.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3KineticLaw.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3KineticLaw.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3KineticLaw.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.h:187, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/KineticLaw.h:191, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3KineticLaw.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3KineticLaw.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3KineticLaw.c:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3KineticLaw.c: In function ‘void L3KineticLawTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3KineticLaw.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("KineticLaw_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 94%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLError.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml 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'/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 94%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLExceptions.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension 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Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 94%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3LocalParameter.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3LocalParameter.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3LocalParameter.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3LocalParameter.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3LocalParameter.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.h:187, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/LocalParameter.h:161, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3LocalParameter.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3LocalParameter.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3LocalParameter.c:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3LocalParameter.c: In function ‘void L3LocalParameterTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3LocalParameter.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("LocalParameter_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3LocalParameter.c: In function ‘void test_L3_LocalParameter_id_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3LocalParameter.c:123:10: warning: too many arguments for format [-Wformat-extra-args] 123 | fail("LocalParameter_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3LocalParameter.c: In function ‘void test_L3_LocalParameter_name_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3LocalParameter.c:143:10: warning: too many arguments for format [-Wformat-extra-args] 143 | fail("LocalParameter_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3LocalParameter.c:152:10: warning: too many arguments for format [-Wformat-extra-args] 152 | fail("LocalParameter_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3LocalParameter.c: In function ‘void test_L3_LocalParameter_units_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3LocalParameter.c:172:10: warning: too many arguments for format [-Wformat-extra-args] 172 | fail("LocalParameter_setUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3LocalParameter.c:181:10: warning: too many arguments for format [-Wformat-extra-args] 181 | fail("LocalParameter_unsetUnits(P, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Model.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Model.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3Model.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3Model.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c: In function ‘void L3ModelTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("Model_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c: In function ‘void test_L3_Model_id_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c:131:10: warning: too many arguments for format [-Wformat-extra-args] 131 | fail("Model_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c:140:10: warning: too many arguments for format [-Wformat-extra-args] 140 | fail("Model_unsetId(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c: In function ‘void test_L3_Model_name_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c:160:10: warning: too many arguments for format [-Wformat-extra-args] 160 | fail("Model_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c:169:10: warning: too many arguments for format [-Wformat-extra-args] 169 | fail("Model_unsetName(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c: In function ‘void test_L3_Model_substanceUnits_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c:189:10: warning: too many arguments for format [-Wformat-extra-args] 189 | fail("Model_setSubstanceUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c:198:10: warning: too many arguments for format [-Wformat-extra-args] 198 | fail("Model_unsetSubstanceUnits(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c: In function ‘void test_L3_Model_timeUnits_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c:218:10: warning: too many arguments for format [-Wformat-extra-args] 218 | fail("Model_setTimeUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c:227:10: warning: too many arguments for format [-Wformat-extra-args] 227 | fail("Model_unsetTimeUnits(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c: In function ‘void test_L3_Model_volumeUnits_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c:247:10: warning: too many arguments for format [-Wformat-extra-args] 247 | fail("Model_setVolumeUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c:256:10: warning: too many arguments for format [-Wformat-extra-args] 256 | fail("Model_unsetVolumeUnits(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c: In function ‘void test_L3_Model_areaUnits_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c:276:10: warning: too many arguments for format [-Wformat-extra-args] 276 | fail("Model_setAreaUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c:285:10: warning: too many arguments for format [-Wformat-extra-args] 285 | fail("Model_unsetAreaUnits(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c: In function ‘void test_L3_Model_lengthUnits_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c:305:10: warning: too many arguments for format [-Wformat-extra-args] 305 | fail("Model_setLengthUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c:314:10: warning: too many arguments for format [-Wformat-extra-args] 314 | fail("Model_unsetLengthUnits(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c: In function ‘void test_L3_Model_extentUnits_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c:334:10: warning: too many arguments for format [-Wformat-extra-args] 334 | fail("Model_setExtentUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c:343:10: warning: too many arguments for format [-Wformat-extra-args] 343 | fail("Model_unsetExtentUnits(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c: In function ‘void test_L3_Model_conversionFactor_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c:363:10: warning: too many arguments for format [-Wformat-extra-args] 363 | fail("Model_setConversionFactor(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Model.c:372:10: warning: too many arguments for format [-Wformat-extra-args] 372 | fail("Model_unsetConversionFactor(M) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 95%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNode.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml 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-fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNode.cpp.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLNode.cpp.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLNode.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/test/TestXMLNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 95%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src 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src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_xml.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Parameter.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src 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file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.h:187, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Parameter.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Parameter.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Parameter.c:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Parameter.c: In function ‘void L3ParameterTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Parameter.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("Parameter_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Parameter.c: In function ‘void test_L3_Parameter_id_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Parameter.c:125:10: warning: too many arguments for format [-Wformat-extra-args] 125 | fail("Parameter_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Parameter.c: In function ‘void test_L3_Parameter_name_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Parameter.c:145:10: warning: too many arguments for format [-Wformat-extra-args] 145 | fail("Parameter_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Parameter.c:154:10: warning: too many arguments for format [-Wformat-extra-args] 154 | fail("Parameter_unsetName(P) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Parameter.c: In function ‘void test_L3_Parameter_units_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Parameter.c:174:10: warning: too many arguments for format [-Wformat-extra-args] 174 | fail("Parameter_setUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Parameter.c:183:10: warning: too many arguments for format [-Wformat-extra-args] 183 | fail("Parameter_unsetUnits(P, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 95%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLAttributesC.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common 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/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/test/TestXMLErrorC.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Reaction.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Reaction.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3Reaction.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3Reaction.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Reaction.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Reaction.h:214, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Reaction.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Reaction.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Reaction.c:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Reaction.c: In function ‘void L3ReactionTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Reaction.c:71:10: warning: too many arguments for format [-Wformat-extra-args] 71 | fail("Reaction_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Reaction.c:77:10: warning: too many arguments for format [-Wformat-extra-args] 77 | fail("Reaction_create(3, 2) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Reaction.c: In function ‘void test_L3_Reaction_id_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Reaction.c:133:10: warning: too many arguments for format [-Wformat-extra-args] 133 | fail("Reaction_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Reaction.c: In function ‘void test_L3_Reaction_name_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Reaction.c:153:10: warning: too many arguments for format [-Wformat-extra-args] 153 | fail("Reaction_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Reaction.c:162:10: warning: too many arguments for format [-Wformat-extra-args] 162 | fail("Reaction_unsetName(R) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Reaction.c: In function ‘void test_L3_Reaction_compartment_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Reaction.c:182:10: warning: too many arguments for format [-Wformat-extra-args] 182 | fail("Reaction_setCompartment(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Reaction.c:191:10: warning: too many arguments for format [-Wformat-extra-args] 191 | fail("Reaction_unsetCompartment(R, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 95%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLErrorLog.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src 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src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLErrorLog.c.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLErrorLog.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLErrorLog.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/test/TestXMLErrorLog.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 95%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLInputStream.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator 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-I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.19.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/test/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLInputStream.c.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLInputStream.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLInputStream.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/test/TestXMLInputStream.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Species.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Species.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3Species.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3Species.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Species.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Species.h:421, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Species.c:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Species.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Species.c:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Species.c: In function ‘void L3SpeciesTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Species.c:73:10: warning: too many arguments for format [-Wformat-extra-args] 73 | fail("Species_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Species.c: In function ‘void test_L3_Species_id_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Species.c:138:10: warning: too many arguments for format [-Wformat-extra-args] 138 | fail("Species_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Species.c: In function ‘void test_L3_Species_name_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Species.c:158:10: warning: too many arguments for format [-Wformat-extra-args] 158 | fail("Species_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Species.c:167:10: warning: too many arguments for format [-Wformat-extra-args] 167 | fail("Species_unsetName(S) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Species.c: In function ‘void test_L3_Species_compartment_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Species.c:187:10: warning: too many arguments for format [-Wformat-extra-args] 187 | fail("Species_setCompartment(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Species.c: In function ‘void test_L3_Species_substanceUnits_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Species.c:252:10: warning: too many arguments for format [-Wformat-extra-args] 252 | fail("Species_setSubstanceUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Species.c:261:10: warning: too many arguments for format [-Wformat-extra-args] 261 | fail("Species_unsetSubstanceUnits(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Species.c: In function ‘void test_L3_Species_conversionFactor_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Species.c:368:10: warning: too many arguments for format [-Wformat-extra-args] 368 | fail("Species_setConversionFactor(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Species.c:377:10: warning: too many arguments for format [-Wformat-extra-args] 377 | fail("Species_unsetConversionFactor(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 95%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNamespaces.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.19.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/test/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNamespaces.c.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLNamespaces.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLNamespaces.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/test/TestXMLNamespaces.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/test/TestXMLNamespaces.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/test/TestXMLNamespaces.c: In function ‘void XMLNamespacesTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/test/TestXMLNamespaces.c:61:10: warning: too many arguments for format [-Wformat-extra-args] 61 | fail("XMLNamespacesTest_setup() failed to create a XMLNamespaces object."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3SpeciesReference.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3SpeciesReference.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3SpeciesReference.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3SpeciesReference.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3SpeciesReference.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.h:269, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3SpeciesReference.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3SpeciesReference.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3SpeciesReference.c:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3SpeciesReference.c: In function ‘void L3SpeciesReferenceTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3SpeciesReference.c:67:10: warning: too many arguments for format [-Wformat-extra-args] 67 | fail("SpeciesReference_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3SpeciesReference.c: In function ‘void test_L3_SpeciesReference_id_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3SpeciesReference.c:122:10: warning: too many arguments for format [-Wformat-extra-args] 122 | fail("SpeciesReference_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3SpeciesReference.c: In function ‘void test_L3_SpeciesReference_name_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3SpeciesReference.c:142:10: warning: too many arguments for format [-Wformat-extra-args] 142 | fail("SpeciesReference_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3SpeciesReference.c:151:10: warning: too many arguments for format [-Wformat-extra-args] 151 | fail("SpeciesReference_unsetName(SR) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3SpeciesReference.c: In function ‘void test_L3_SpeciesReference_species_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3SpeciesReference.c:171:10: warning: too many arguments for format [-Wformat-extra-args] 171 | fail("SpeciesReference_setSpecies(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 95%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNode_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.19.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/test/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLNode_newSetters.c.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLNode_newSetters.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLNode_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/test/TestXMLNode_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Trigger.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Trigger.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3Trigger.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3Trigger.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Trigger.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Trigger.c:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Trigger.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Trigger.c:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Trigger.c: In function ‘void L3TriggerTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Trigger.c:71:10: warning: too many arguments for format [-Wformat-extra-args] 71 | fail("Trigger_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 95%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.19.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/test/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/test/TestXMLOutputStream.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Unit.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestL3Unit.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestL3Unit.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestL3Unit.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Unit.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Unit.h:222, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Unit.c:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Unit.c:43: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Unit.c:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Unit.c: In function ‘void L3UnitTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestL3Unit.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("Unit_create(3, 1) returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 95%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLToken.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.19.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/test/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLToken.c.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLToken.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLToken.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/test/TestXMLToken.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 95%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLToken_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.19.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/test/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLToken_newSetters.c.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLToken_newSetters.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLToken_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/test/TestXMLToken_newSetters.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestListOf.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestListOf.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestListOf.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestListOf.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestListOf.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestListOf.c:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestListOf.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 95%] Building CXX object src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLTriple.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/xml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.19.0-Source/include/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/test/.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/TestXMLTriple.c.o -MF CMakeFiles/test_sbml_xml.dir/TestXMLTriple.c.o.d -o CMakeFiles/test_sbml_xml.dir/TestXMLTriple.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/test/TestXMLTriple.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 95%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModel.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModel.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestModel.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestModel.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModel.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModel.c:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModel.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModel.c:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModel.c: In function ‘void ModelTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModel.c:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("Model_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModel.c: In function ‘void test_Model_setId_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModel.c:154:10: warning: too many arguments for format [-Wformat-extra-args] 154 | fail("Model_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModel.c:166:10: warning: too many arguments for format [-Wformat-extra-args] 166 | fail("Model_setId(M, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModel.c: In function ‘void test_Model_setName_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModel.c:189:10: warning: too many arguments for format [-Wformat-extra-args] 189 | fail("Model_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModel.c:201:10: warning: too many arguments for format [-Wformat-extra-args] 201 | fail("Model_setName(M, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModel_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModel_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestModel_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestModel_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModel_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModel_newSetters.c:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModel_newSetters.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModel_newSetters.c:65: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModel_newSetters.c: In function ‘void ModelTest1_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModel_newSetters.c:87:10: warning: too many arguments for format [-Wformat-extra-args] 87 | fail("Model_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModifierSpeciesReference.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestModifierSpeciesReference.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestModifierSpeciesReference.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestModifierSpeciesReference.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModifierSpeciesReference.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModifierSpeciesReference.c:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModifierSpeciesReference.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModifierSpeciesReference.c:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModifierSpeciesReference.c: In function ‘void ModifierSpeciesReferenceTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModifierSpeciesReference.c:72:11: warning: too many arguments for format [-Wformat-extra-args] 72 | fail( "ModifierSpeciesReference_create() returned a NULL pointer." ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModifierSpeciesReference.c: In function ‘void test_ModifierSpeciesReference_setSpecies_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModifierSpeciesReference.c:124:11: warning: too many arguments for format [-Wformat-extra-args] 124 | fail( "ModifierModifierSpeciesReference_setSpecies(...) " | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 | "did not make a copy of string." ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModifierSpeciesReference.c:140:11: warning: too many arguments for format [-Wformat-extra-args] 140 | fail( "ModifierModifierSpeciesReference_setSpecies(MSR, NULL) " | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 | "did not clear string." ); | ~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModifierSpeciesReference.c: In function ‘void test_ModifierSpeciesReference_unsetSpecies_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModifierSpeciesReference.c:162:11: warning: too many arguments for format [-Wformat-extra-args] 162 | fail( "ModifierModifierSpeciesReference_setSpecies(...) " | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 | "did not make a copy of string." ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestModifierSpeciesReference.c:171:11: warning: too many arguments for format [-Wformat-extra-args] 171 | fail( "ModifierModifierSpeciesReference_unsetSpecies(MSR) " | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | "did not clear string." ); | ~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameter.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameter.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestParameter.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestParameter.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameter.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.h:187, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameter.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameter.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameter.c:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameter.c: In function ‘void ParameterTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameter.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("Parameter_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameter.c: In function ‘void test_Parameter_setId_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameter.c:148:10: warning: too many arguments for format [-Wformat-extra-args] 148 | fail("Parameter_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameter.c:160:10: warning: too many arguments for format [-Wformat-extra-args] 160 | fail("Parameter_setId(P, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameter.c: In function ‘void test_Parameter_setName_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameter.c:178:10: warning: too many arguments for format [-Wformat-extra-args] 178 | fail("Parameter_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameter.c:190:10: warning: too many arguments for format [-Wformat-extra-args] 190 | fail("Parameter_setName(P, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameter.c: In function ‘void test_Parameter_setUnits_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameter.c:208:10: warning: too many arguments for format [-Wformat-extra-args] 208 | fail("Parameter_setUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameter.c:220:10: warning: too many arguments for format [-Wformat-extra-args] 220 | fail("Parameter_setUnits(P, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameterRule.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameterRule.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestParameterRule.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestParameterRule.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameterRule.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.h:150, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameterRule.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameterRule.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameterRule.c:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameterRule.c: In function ‘void ParameterRuleTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameterRule.c:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("Rule_createAssignment() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameterRule.c: In function ‘void test_ParameterRule_setName_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameterRule.c:153:11: warning: too many arguments for format [-Wformat-extra-args] 153 | fail( "ParameterRule_setName(...) did not make a copy of string." ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameterRule.c:168:11: warning: too many arguments for format [-Wformat-extra-args] 168 | fail( "Rule_setVariable(PR, NULL)" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 | " did not clear string." ); | ~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameterRule.c: In function ‘void test_ParameterRule_setUnits_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameterRule.c:187:11: warning: too many arguments for format [-Wformat-extra-args] 187 | fail( "Rule_setUnits(...) did not make a copy of string." ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameterRule.c:199:11: warning: too many arguments for format [-Wformat-extra-args] 199 | fail( "Rule_setUnits(PR, NULL) did not clear string." ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameter_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestParameter_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestParameter_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestParameter_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameter_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Parameter.h:187, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameter_newSetters.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameter_newSetters.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameter_newSetters.c:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameter_newSetters.c: In function ‘void ParameterTest1_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestParameter_newSetters.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("Parameter_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestPriority.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestPriority.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestPriority.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestPriority.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestPriority.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestPriority.c:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestPriority.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestPriority.c:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestPriority.c: In function ‘void PriorityTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestPriority.c:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("Priority_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestPriority.c: In function ‘void test_Priority_setMath_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestPriority.c:133:10: warning: too many arguments for format [-Wformat-extra-args] 133 | fail("Priority_setMath(P, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRateRule.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRateRule.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestRateRule.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestRateRule.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRateRule.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRateRule.c:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRateRule.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRateRule.c:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRateRule.c: In function ‘void RateRuleTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRateRule.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("RateRule_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRateRule.c: In function ‘void test_RateRule_setVariable_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRateRule.c:117:10: warning: too many arguments for format [-Wformat-extra-args] 117 | fail("RateRule_setVariable(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRateRule.c:129:10: warning: too many arguments for format [-Wformat-extra-args] 129 | fail("RateRule_setVariable(RR, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRateRule.c: In function ‘void test_RateRule_unsetVariable_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRateRule.c:150:10: warning: too many arguments for format [-Wformat-extra-args] 150 | fail("RateRule_unsetVariable(RR) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReaction.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReaction.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestReaction.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReaction.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReaction.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReaction.c:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReaction.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReaction.c:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReaction.c: In function ‘void ReactionTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReaction.c:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("Reaction_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReaction.c: In function ‘void test_Reaction_setId_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReaction.c:158:10: warning: too many arguments for format [-Wformat-extra-args] 158 | fail("Reaction_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReaction.c:170:10: warning: too many arguments for format [-Wformat-extra-args] 170 | fail("Reaction_setId(R, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReaction.c: In function ‘void test_Reaction_setName_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReaction.c:188:10: warning: too many arguments for format [-Wformat-extra-args] 188 | fail("Reaction_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReaction.c:200:10: warning: too many arguments for format [-Wformat-extra-args] 200 | fail("Reaction_setName(R, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReaction.c: In function ‘void test_Reaction_compartment_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReaction.c:275:10: warning: too many arguments for format [-Wformat-extra-args] 275 | fail("Reaction_setCompartment(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReaction.c:287:10: warning: too many arguments for format [-Wformat-extra-args] 287 | fail("Reaction_unsetCompartment(r) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReaction_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReaction_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestReaction_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReaction_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReaction_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Reaction.h:214, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReaction_newSetters.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReaction_newSetters.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReaction_newSetters.c:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReaction_newSetters.c: In function ‘void ReactionTest1_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReaction_newSetters.c:73:10: warning: too many arguments for format [-Wformat-extra-args] 73 | fail("Reaction_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile1.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile1.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFile1.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile1.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile1.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile1.c:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile1.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile1.c:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile1.c: In function ‘void test_read_l1v1_branch_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile1.c:80:10: warning: too many arguments for format [-Wformat-extra-args] 80 | fail("readSBML(\"l1v1-branch.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile2.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile2.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFile2.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile2.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile2.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile2.c:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile2.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile2.c:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile2.c: In function ‘void test_read_l1v1_units_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile2.c:80:10: warning: too many arguments for format [-Wformat-extra-args] 80 | fail("readSBML(\"l1v1-units.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile3.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile3.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFile3.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile3.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile3.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile3.c:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile3.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile3.c:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile3.c: In function ‘void test_read_l1v1_rules_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile3.c:81:10: warning: too many arguments for format [-Wformat-extra-args] 81 | fail("readSBML(\"l1v1-rules.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 97%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile4.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestReadFromFile4.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestReadFromFile4.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile4.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile4.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTypes.h:48, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile4.c:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile4.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile4.c:46: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile4.c: In function ‘void test_read_l1v1_minimal_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestReadFromFile4.c:76:10: warning: too many arguments for format [-Wformat-extra-args] 76 | fail("readSBML(\"l1v1-minimal.xml\") returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRule.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRule.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestRule.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestRule.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRule.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRule.c:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRule.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRule.c:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRule.c: In function ‘void RuleTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRule.c:71:10: warning: too many arguments for format [-Wformat-extra-args] 71 | fail("Rule_createAlgebraic() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRule.c: In function ‘void test_Rule_setFormula_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRule.c:108:10: warning: too many arguments for format [-Wformat-extra-args] 108 | fail("Rule_setFormula(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRule.c:120:10: warning: too many arguments for format [-Wformat-extra-args] 120 | fail("Rule_setFormula(R, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRule.c: In function ‘void test_Rule_setMath_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRule.c:145:10: warning: too many arguments for format [-Wformat-extra-args] 145 | fail("Rule_setMath(R, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRule_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRule_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestRule_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestRule_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRule_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRule_newSetters.c:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRule_newSetters.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRule_newSetters.c:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRule_newSetters.c: In function ‘void RuleTest1_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRule_newSetters.c:73:10: warning: too many arguments for format [-Wformat-extra-args] 73 | fail("Rule_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRunner.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestRunner.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestRunner.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestRunner.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestRunner.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvert.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLConvert.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBMLConvert.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBMLConvert.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLConvert.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLDocument.h:307, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLConvert.c:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLConvert.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLDocument.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSBMLDocument.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSBMLDocument.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSBMLDocument.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLDocument.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Model.h:454, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLDocument.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSBMLDocument.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpecies.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpecies.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSpecies.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSpecies.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Species.h:421, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies.c:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies.c: In function ‘void SpeciesTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies.c:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("Species_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies.c: In function ‘void test_Species_setId_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies.c:167:10: warning: too many arguments for format [-Wformat-extra-args] 167 | fail("Species_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies.c:179:10: warning: too many arguments for format [-Wformat-extra-args] 179 | fail("Species_setId(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies.c: In function ‘void test_Species_setName_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies.c:197:10: warning: too many arguments for format [-Wformat-extra-args] 197 | fail("Species_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies.c:209:10: warning: too many arguments for format [-Wformat-extra-args] 209 | fail("Species_setName(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies.c: In function ‘void test_Species_setCompartment_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies.c:227:10: warning: too many arguments for format [-Wformat-extra-args] 227 | fail("Species_setCompartment(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies.c:239:10: warning: too many arguments for format [-Wformat-extra-args] 239 | fail("Species_setComartment(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies.c: In function ‘void test_Species_unsetCompartment_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies.c:257:10: warning: too many arguments for format [-Wformat-extra-args] 257 | fail("Species_setCompartment(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies.c:265:10: warning: too many arguments for format [-Wformat-extra-args] 265 | fail("Species_unsetComartment(S) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies.c: In function ‘void test_Species_setSubstanceUnits_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies.c:313:10: warning: too many arguments for format [-Wformat-extra-args] 313 | fail("Species_setSubstanceUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies.c:325:10: warning: too many arguments for format [-Wformat-extra-args] 325 | fail("Species_setSubstanceUnits(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies.c: In function ‘void test_Species_setSpatialSizeUnits_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies.c:345:10: warning: too many arguments for format [-Wformat-extra-args] 345 | fail("Species_setSpatialSizeUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies.c:357:10: warning: too many arguments for format [-Wformat-extra-args] 357 | fail("Species_setSpatialSizeUnits(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies.c: In function ‘void test_Species_setUnits_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies.c:377:10: warning: too many arguments for format [-Wformat-extra-args] 377 | fail("Species_setUnits(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies.c:389:10: warning: too many arguments for format [-Wformat-extra-args] 389 | fail("Species_setUnits(S, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesConcentrationRule.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesConcentrationRule.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSpeciesConcentrationRule.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesConcentrationRule.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesConcentrationRule.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Rule.h:150, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesConcentrationRule.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesConcentrationRule.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesConcentrationRule.c:47: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesConcentrationRule.c: In function ‘void SpeciesConcentrationRuleTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesConcentrationRule.c:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("Rule_createAssignment() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesConcentrationRule.c: In function ‘void test_SpeciesConcentrationRule_setSpecies_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesConcentrationRule.c:148:11: warning: too many arguments for format [-Wformat-extra-args] 148 | fail( "SpeciesConcentrationRule_setSpecies(...)" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 | " did not make a copy of string." ); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesConcentrationRule.c:163:11: warning: too many arguments for format [-Wformat-extra-args] 163 | fail( "SpeciesConcentrationRule_setSpecies(SCR, NULL)" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 | " did not clear string." ); | ~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesReference.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaFormatter.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesReference.c:44: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesReference.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesReference.c:53: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesReference.c: In function ‘void SpeciesReferenceTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesReference.c:74:10: warning: too many arguments for format [-Wformat-extra-args] 74 | fail("SpeciesReference_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesReference.c: In function ‘void test_SpeciesReference_setSpecies_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesReference.c:162:10: warning: too many arguments for format [-Wformat-extra-args] 162 | fail("SpeciesReference_setSpecies(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesReference.c:174:10: warning: too many arguments for format [-Wformat-extra-args] 174 | fail("SpeciesReference_setSpecies(SR, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesReference.c: In function ‘void test_SpeciesReference_unsetSpecies_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesReference.c:192:10: warning: too many arguments for format [-Wformat-extra-args] 192 | fail("SpeciesReference_setSpecies(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesReference.c:200:10: warning: too many arguments for format [-Wformat-extra-args] 200 | fail("SpeciesReference_unsetSpecies(SR) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesReference.c: In function ‘void test_SpeciesReference_setId_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesReference.c:218:10: warning: too many arguments for format [-Wformat-extra-args] 218 | fail("SpeciesReference_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesReference.c:230:10: warning: too many arguments for format [-Wformat-extra-args] 230 | fail("SpeciesReference_setId(SR, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesReference_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesReference.h:269, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesReference_newSetters.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesReference_newSetters.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesReference_newSetters.c:52: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesReference_newSetters.c: In function ‘void SpeciesReferenceTest1_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesReference_newSetters.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("SpeciesReference_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesType.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesType.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSpeciesType.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesType.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesType.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesType.h:101, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesType.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesType.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesType.c:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesType.c: In function ‘void SpeciesTypeTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesType.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("SpeciesType_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesType.c: In function ‘void test_SpeciesType_setId_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesType.c:139:10: warning: too many arguments for format [-Wformat-extra-args] 139 | fail("SpeciesType_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesType.c:151:10: warning: too many arguments for format [-Wformat-extra-args] 151 | fail("SpeciesType_setId(CT, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesType.c: In function ‘void test_SpeciesType_setName_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesType.c:169:10: warning: too many arguments for format [-Wformat-extra-args] 169 | fail("SpeciesType_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesType.c:181:10: warning: too many arguments for format [-Wformat-extra-args] 181 | fail("SpeciesType_setName(CT, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesType_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpeciesType_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSpeciesType_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSpeciesType_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesType_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SpeciesType.h:101, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesType_newSetters.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesType_newSetters.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesType_newSetters.c:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesType_newSetters.c: In function ‘void SpeciesTypeTest1_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpeciesType_newSetters.c:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("SpeciesType_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 98%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpecies_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSpecies_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSpecies_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSpecies_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Species.h:421, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies_newSetters.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies_newSetters.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies_newSetters.c:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies_newSetters.c: In function ‘void SpeciesTest1_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSpecies_newSetters.c:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("Species_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestStoichiometryMath.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestStoichiometryMath.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestStoichiometryMath.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestStoichiometryMath.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestStoichiometryMath.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestStoichiometryMath.c:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestStoichiometryMath.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestStoichiometryMath.c:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestStoichiometryMath.c: In function ‘void StoichiometryMathTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestStoichiometryMath.c:72:10: warning: too many arguments for format [-Wformat-extra-args] 72 | fail("StoichiometryMath_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestStoichiometryMath.c: In function ‘void test_StoichiometryMath_setMath_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestStoichiometryMath.c:166:10: warning: too many arguments for format [-Wformat-extra-args] 166 | fail("StoichiometryMath_setMath(D, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSyntaxChecker.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestSyntaxChecker.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestSyntaxChecker.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestSyntaxChecker.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestSyntaxChecker.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestTrigger.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestTrigger.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestTrigger.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestTrigger.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestTrigger.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/FunctionDefinition.h:141, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/SBMLTransforms.h:57, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/ASTBasePlugin.h:68, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/ASTNode.h:189, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/FormulaParser.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestTrigger.c:43: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestTrigger.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestTrigger.c:51: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestTrigger.c: In function ‘void TriggerTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestTrigger.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("Trigger_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestTrigger.c: In function ‘void test_Trigger_setMath_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestTrigger.c:164:10: warning: too many arguments for format [-Wformat-extra-args] 164 | fail("Trigger_setMath(D, NULL) did not clear ASTNode."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnit.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnit.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestUnit.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestUnit.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnit.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Unit.h:222, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnit.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnit.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnit.c:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnit.c: In function ‘void UnitTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnit.c:70:10: warning: too many arguments for format [-Wformat-extra-args] 70 | fail("Unit_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnitDefinition.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Unit.h:222, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnitDefinition.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnitDefinition.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnitDefinition.c:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnitDefinition.c: In function ‘void UnitDefinitionTest_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnitDefinition.c:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("UnitDefinition_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnitDefinition.c: In function ‘void test_UnitDefinition_setId_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnitDefinition.c:164:10: warning: too many arguments for format [-Wformat-extra-args] 164 | fail("UnitDefinition_setId(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnitDefinition.c:176:10: warning: too many arguments for format [-Wformat-extra-args] 176 | fail("UnitDefinition_setId(R, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnitDefinition.c: In function ‘void test_UnitDefinition_setName_fn(int)’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnitDefinition.c:194:10: warning: too many arguments for format [-Wformat-extra-args] 194 | fail("UnitDefinition_setName(...) did not make a copy of string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnitDefinition.c:206:10: warning: too many arguments for format [-Wformat-extra-args] 206 | fail("UnitDefinition_setName(R, NULL) did not clear string."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnitDefinition_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Unit.h:222, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnitDefinition_newSetters.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnitDefinition_newSetters.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnitDefinition_newSetters.c:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnitDefinition_newSetters.c: In function ‘void UnitDefinitionTest1_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnitDefinition_newSetters.c:69:10: warning: too many arguments for format [-Wformat-extra-args] 69 | fail("UnitDefinition_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitKind.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnitKind.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestUnitKind.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestUnitKind.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnitKind.c make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Building CXX object src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnit_newSetters.c.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -MD -MT src/sbml/test/CMakeFiles/test_sbml_sbml.dir/TestUnit_newSetters.c.o -MF CMakeFiles/test_sbml_sbml.dir/TestUnit_newSetters.c.o.d -o CMakeFiles/test_sbml_sbml.dir/TestUnit_newSetters.c.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnit_newSetters.c In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/Unit.h:222, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnit_newSetters.c:45: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/common/common.h:122, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnit_newSetters.c:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnit_newSetters.c:49: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnit_newSetters.c: In function ‘void UnitTest1_setup()’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test/TestUnit_newSetters.c:68:10: warning: too many arguments for format [-Wformat-extra-args] 68 | fail("Unit_create() returned a NULL pointer."); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 88%] Linking CXX executable test_sbml_units cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/units/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_units.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/test_sbml_units.dir/TestCalculatedUnitDefinitions.cpp.o CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions.cpp.o CMakeFiles/test_sbml_units.dir/TestDerivedUnitDefinitions_undefined.cpp.o CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData.cpp.o CMakeFiles/test_sbml_units.dir/TestFormulaUnitsData_map.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter1.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter2.cpp.o CMakeFiles/test_sbml_units.dir/TestUnitFormulaFormatter3.cpp.o CMakeFiles/test_sbml_units.dir/TestUtilsUnit.cpp.o CMakeFiles/test_sbml_units.dir/TestUtilsUnitDefinition.cpp.o CMakeFiles/test_sbml_units.dir/TestRunner.c.o -o test_sbml_units ../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Built target test_sbml_units make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl/CMakeFiles/binding_perl_lib.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 94%] Linking CXX executable test_sbml_validator cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/validator/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_validator.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/test_sbml_validator.dir/TestConsistencyValidator.cpp.o CMakeFiles/test_sbml_validator.dir/TestFile.cpp.o CMakeFiles/test_sbml_validator.dir/TestValidator.cpp.o -o test_sbml_validator ../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Built target test_sbml_validator make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_lib.dir/build.make src/bindings/python/CMakeFiles/binding_python_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/CMakeFiles/binding_python_lib.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_lib.dir/build.make src/bindings/python/CMakeFiles/binding_python_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 96%] Linking CXX executable test_sbml_xml cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/xml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_xml.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -rdynamic CMakeFiles/test_sbml_xml.dir/TestCopyAndClone.cpp.o CMakeFiles/test_sbml_xml.dir/TestXMLAttributes.cpp.o CMakeFiles/test_sbml_xml.dir/TestXMLError.cpp.o CMakeFiles/test_sbml_xml.dir/TestXMLExceptions.cpp.o CMakeFiles/test_sbml_xml.dir/TestXMLNode.cpp.o CMakeFiles/test_sbml_xml.dir/TestRunner.c.o CMakeFiles/test_sbml_xml.dir/TestXMLAttributesC.c.o CMakeFiles/test_sbml_xml.dir/TestXMLErrorC.c.o CMakeFiles/test_sbml_xml.dir/TestXMLErrorLog.c.o CMakeFiles/test_sbml_xml.dir/TestXMLInputStream.c.o CMakeFiles/test_sbml_xml.dir/TestXMLNamespaces.c.o CMakeFiles/test_sbml_xml.dir/TestXMLNode_newSetters.c.o CMakeFiles/test_sbml_xml.dir/TestXMLOutputStream.c.o CMakeFiles/test_sbml_xml.dir/TestXMLToken.c.o CMakeFiles/test_sbml_xml.dir/TestXMLToken_newSetters.c.o CMakeFiles/test_sbml_xml.dir/TestXMLTriple.c.o -o test_sbml_xml ../../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Built target test_sbml_xml make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/ruby /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Linking CXX executable test_sbml_sbml cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sbml_sbml.dir/link.txt --verbose=1 /usr/bin/g++ -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld 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CMakeFiles/test_sbml_sbml.dir/TestSBMLValidators.cpp.o CMakeFiles/test_sbml_sbml.dir/TestSBase.cpp.o CMakeFiles/test_sbml_sbml.dir/TestSBaseIdName.cpp.o CMakeFiles/test_sbml_sbml.dir/TestSBase_newSetters.cpp.o CMakeFiles/test_sbml_sbml.dir/TestWriteL3SBML.cpp.o CMakeFiles/test_sbml_sbml.dir/TestWriteL3V2SBML.cpp.o CMakeFiles/test_sbml_sbml.dir/TestWriteSBML.cpp.o CMakeFiles/test_sbml_sbml.dir/TestAlgebraicRule.c.o CMakeFiles/test_sbml_sbml.dir/TestAssignmentRule.c.o CMakeFiles/test_sbml_sbml.dir/TestCompartment.c.o CMakeFiles/test_sbml_sbml.dir/TestCompartmentType.c.o CMakeFiles/test_sbml_sbml.dir/TestCompartmentType_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestCompartmentVolumeRule.c.o CMakeFiles/test_sbml_sbml.dir/TestCompartment_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestConstraint.c.o CMakeFiles/test_sbml_sbml.dir/TestConstraint_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestDelay.c.o CMakeFiles/test_sbml_sbml.dir/TestEvent.c.o 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CMakeFiles/test_sbml_sbml.dir/TestL3Trigger.c.o CMakeFiles/test_sbml_sbml.dir/TestL3Unit.c.o CMakeFiles/test_sbml_sbml.dir/TestListOf.c.o CMakeFiles/test_sbml_sbml.dir/TestModel.c.o CMakeFiles/test_sbml_sbml.dir/TestModel_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestModifierSpeciesReference.c.o CMakeFiles/test_sbml_sbml.dir/TestParameter.c.o CMakeFiles/test_sbml_sbml.dir/TestParameterRule.c.o CMakeFiles/test_sbml_sbml.dir/TestParameter_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestPriority.c.o CMakeFiles/test_sbml_sbml.dir/TestRateRule.c.o CMakeFiles/test_sbml_sbml.dir/TestReaction.c.o CMakeFiles/test_sbml_sbml.dir/TestReaction_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile1.c.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile2.c.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile3.c.o CMakeFiles/test_sbml_sbml.dir/TestReadFromFile4.c.o CMakeFiles/test_sbml_sbml.dir/TestRule.c.o CMakeFiles/test_sbml_sbml.dir/TestRule_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestRunner.c.o CMakeFiles/test_sbml_sbml.dir/TestSBMLConvert.c.o CMakeFiles/test_sbml_sbml.dir/TestSBMLDocument.c.o CMakeFiles/test_sbml_sbml.dir/TestSpecies.c.o CMakeFiles/test_sbml_sbml.dir/TestSpeciesConcentrationRule.c.o CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference.c.o CMakeFiles/test_sbml_sbml.dir/TestSpeciesReference_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestSpeciesType.c.o CMakeFiles/test_sbml_sbml.dir/TestSpeciesType_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestSpecies_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestStoichiometryMath.c.o CMakeFiles/test_sbml_sbml.dir/TestSyntaxChecker.c.o CMakeFiles/test_sbml_sbml.dir/TestTrigger.c.o CMakeFiles/test_sbml_sbml.dir/TestUnit.c.o CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition.c.o CMakeFiles/test_sbml_sbml.dir/TestUnitDefinition_newSetters.c.o CMakeFiles/test_sbml_sbml.dir/TestUnitKind.c.o CMakeFiles/test_sbml_sbml.dir/TestUnit_newSetters.c.o -o test_sbml_sbml ../../libsbml-static.a -lcheck -lbz2 -lz -lminizip -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp: In function ‘safe_strcat’: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:206:10: warning: ‘__builtin___strncat_chk’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 206 | strncat(concat, str2, (size_t)len2); | ^ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/util.cpp:200:24: note: length computed here 200 | len2 = (int)strlen(str2); | ^ make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Built target test_sbml_sbml make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_lib.dir/build.make src/bindings/r/CMakeFiles/binding_r_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/r /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/CMakeFiles/binding_r_lib.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_lib.dir/build.make src/bindings/r/CMakeFiles/binding_r_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Building CXX object src/bindings/r/CMakeFiles/binding_r_lib.dir/libsbml_wrap.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_r_lib_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/r -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/r/../swig -I/builddir/build/BUILD/libSBML-5.19.0-Source/include -I/usr/include/R -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/bindings/r/CMakeFiles/binding_r_lib.dir/libsbml_wrap.cpp.o -MF CMakeFiles/binding_r_lib.dir/libsbml_wrap.cpp.o.d -o CMakeFiles/binding_r_lib.dir/libsbml_wrap.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libsbml_wrap.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libsbml_wrap.cpp: In function ‘int SWIG_R_ConvertPtrAndOwn(SEXP, void**, swig_type_info*, int, int*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libsbml_wrap.cpp:1069:11: warning: unused variable ‘newmemory’ [-Wunused-variable] 1069 | int newmemory = 0; | ^~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/r/../swig/libsbml.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libsbml_wrap.cpp:1764: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h: At global scope: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/stdexcept:39, from /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libsbml_wrap.cpp:1761: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/r/../swig/fbc-package.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/../swig/libsbml-packages.h:5, from /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libsbml_wrap.cpp:1768: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/r/../swig/layout-package.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/../swig/libsbml-packages.h:8: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/r/../swig/layout-package.h:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/r/../swig/layout-package.h:54: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/r/../swig/layout-package.h:57: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/r/../swig/layout-package.h:58: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libsbml_wrap.cpp: In function ‘int _p_f_p_q_const__ASTNode__int(const ASTNode_t*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libsbml_wrap.cpp:115806:7: warning: unused variable ‘ecode’ [-Wunused-variable] 115806 | int ecode = 0; | ^~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libsbml_wrap.cpp: In function ‘int _p_f_p_Model_p_SBMLErrorLog_p_void__int(Model*, SBMLErrorLog*, void*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libsbml_wrap.cpp:140813:7: warning: unused variable ‘ecode’ [-Wunused-variable] 140813 | int ecode = 0; | ^~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libsbml_wrap.cpp: In function ‘R_swig_Transformation2D_setMatrix’: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libsbml_wrap.cpp:265246:9: warning: ‘arg2’ may be used uninitialized [-Wmaybe-uninitialized] 265246 | free(arg2); | ~~~~^~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libsbml_wrap.cpp:265213:13: note: ‘arg2’ was declared here 265213 | double *arg2 ; | ^~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libsbml_wrap.cpp: In function ‘R_swig_Transformation2D_setMatrix2D’: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libsbml_wrap.cpp:265200:9: warning: ‘arg2’ may be used uninitialized [-Wmaybe-uninitialized] 265200 | free(arg2); | ~~~~^~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libsbml_wrap.cpp:265167:13: note: ‘arg2’ was declared here 265167 | double *arg2 ; | ^~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libsbml_wrap.cpp: In function ‘R_swig_Transformation_setMatrix’: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libsbml_wrap.cpp:264440:9: warning: ‘arg2’ may be used uninitialized [-Wmaybe-uninitialized] 264440 | free(arg2); | ~~~~^~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libsbml_wrap.cpp:264407:13: note: ‘arg2’ was declared here 264407 | double *arg2 ; | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Building CXX object src/bindings/python/CMakeFiles/binding_python_lib.dir/libsbml_wrap.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_python_lib_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig -I/builddir/build/BUILD/libSBML-5.19.0-Source/include -I/usr/include/python3.12 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/bindings/python/CMakeFiles/binding_python_lib.dir/libsbml_wrap.cpp.o -MF CMakeFiles/binding_python_lib.dir/libsbml_wrap.cpp.o.d -o CMakeFiles/binding_python_lib.dir/libsbml_wrap.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/libsbml_wrap.cpp make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/libsbml.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/libsbml_wrap.cpp:3940: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/libsbml_wrap.cpp:3007: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/fbc-package.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/../swig/libsbml-packages.h:5, from /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/libsbml_wrap.cpp:3944: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/layout-package.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/../swig/libsbml-packages.h:8: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/layout-package.h:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/layout-package.h:54: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/layout-package.h:57: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/../swig/layout-package.h:58: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Building CXX object src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/libsbml_wrap.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_ruby_lib_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/ruby -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/ruby/../swig -I/builddir/build/BUILD/libSBML-5.19.0-Source/include -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/libsbml_wrap.cpp.o -MF CMakeFiles/binding_ruby_lib.dir/libsbml_wrap.cpp.o.d -o CMakeFiles/binding_ruby_lib.dir/libsbml_wrap.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function ‘void SWIG_RubyInitializeTrackings()’: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:1272:29: warning: ‘void ruby::backward::cxxanyargs::rb_define_virtual_variable(const char*, VALUE (*)(...), void (*)(...))’ is deprecated: Use of ANYARGS in this function is deprecated [-Wdeprecated-declarations] 1272 | rb_define_virtual_variable("SWIG_TRACKINGS_COUNT", | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 1273 | VALUEFUNC(swig_ruby_trackings_count), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1274 | SWIG_RUBY_VOID_ANYARGS_FUNC((rb_gvar_setter_t*)NULL)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/ruby/internal/anyargs.h:83, from /usr/include/ruby/ruby.h:27, from /usr/include/ruby.h:38, from /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:873: /usr/include/ruby/backward/cxxanyargs.hpp:73:1: note: declared here 73 | rb_define_virtual_variable(const char *q, type *w, void_type *e) | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function ‘void SWIG_RubyIterateTrackings(void (*)(void*, VALUE))’: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:1329:13: warning: ‘int ruby::backward::cxxanyargs::rb_st_foreach(st_table*, int (*)(...), st_data_t)’ is deprecated: Use of ANYARGS in this function is deprecated [-Wdeprecated-declarations] 1329 | st_foreach(swig_ruby_trackings, | ^ In file included from /usr/include/ruby/internal/intern/hash.h:26, from /usr/include/ruby/backward/cxxanyargs.hpp:16: /usr/include/ruby/backward/cxxanyargs.hpp:432:1: note: declared here 432 | st_foreach(st_table *q, int_type *w, st_data_t e) | ^~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/ruby/../swig/libsbml.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2687: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h: At global scope: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:1886: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/ruby/../swig/fbc-package.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/../swig/libsbml-packages.h:5, from /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2691: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/ruby/../swig/layout-package.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/../swig/libsbml-packages.h:8: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/ruby/../swig/layout-package.h:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/ruby/../swig/layout-package.h:54: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virmake[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' tual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/ruby/../swig/layout-package.h:57: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/ruby/../swig/layout-package.h:58: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function ‘int SWIG_AsVal_unsigned_SS_long(VALUE, long unsigned int*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2734:18: warning: ‘VALUE ruby::backward::cxxanyargs::rb_rescue(VALUE (*)(...), VALUE, VALUE (*)(...), VALUE)’ is deprecated: Use of ANYARGS in this function is deprecated [-Wdeprecated-declarations] 2734 | if (rb_rescue(VALUEFUNC(SWIG_AUX_NUM2ULONG), (VALUE)a, VALUEFUNC(SWIG_ruby_failed), 0) != Qnil) { | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/ruby/backward/cxxanyargs.hpp:260:1: note: declared here 260 | rb_rescue(type *q, VALUE w, type *e, VALUE r) | ^~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In member function ‘bool swig::GC_VALUE::relational_equal_op(const swig::GC_VALUE&, const ID&, bool (*)(const VALUE&, const VALUE&)) const’: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2951:24: warning: ‘VALUE ruby::backward::cxxanyargs::rb_rescue(VALUE (*)(...), VALUE, VALUE (*)(...), VALUE)’ is deprecated: Use of ANYARGS in this function is deprecated [-Wdeprecated-declarations] 2951 | ret = rb_rescue(VALUEFUNC(swig_rescue_funcall), VALUE(&args), | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2952 | (VALUEFUNC(swig_rescue_swallow)), Qnil); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/ruby/backward/cxxanyargs.hpp:260:1: note: declared here 260 | rb_rescue(type *q, VALUE w, type *e, VALUE r) | ^~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In member function ‘swig::GC_VALUE swig::GC_VALUE::unary_op(const ID&) const’: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:2991:22: warning: ‘VALUE ruby::backward::cxxanyargs::rb_rescue(VALUE (*)(...), VALUE, VALUE (*)(...), VALUE)’ is deprecated: Use of ANYARGS in this function is deprecated [-Wdeprecated-declarations] 2991 | ret = rb_rescue(VALUEFUNC(swig_rescue_funcall), VALUE(&args), | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2992 | (VALUEFUNC(swig_rescue_swallow)), Qnil); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/ruby/backward/cxxanyargs.hpp:260:1: note: declared here 260 | rb_rescue(type *q, VALUE w, type *e, VALUE r) | ^~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In member function ‘swig::GC_VALUE swig::GC_VALUE::binary_op(const swig::GC_VALUE&, const ID&) const’: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:3010:22: warning: ‘VALUE ruby::backward::cxxanyargs::rb_rescue(VALUE (*)(...), VALUE, VALUE (*)(...), VALUE)’ is deprecated: Use of ANYARGS in this function is deprecated [-Wdeprecated-declarations] 3010 | ret = rb_rescue(VALUEFUNC(swig_rescue_funcall), VALUE(&args), | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3011 | (VALUEFUNC(swig_rescue_swallow)), Qnil); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/ruby/backward/cxxanyargs.hpp:260:1: note: declared here 260 | rb_rescue(type *q, VALUE w, type *e, VALUE r) | ^~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function ‘int SWIG_AsVal_unsigned_SS_long_SS_long(VALUE, long long unsigned int*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:3354:18: warning: ‘VALUE ruby::backward::cxxanyargs::rb_rescue(VALUE (*)(...), VALUE, VALUE (*)(...), VALUE)’ is deprecated: Use of ANYARGS in this function is deprecated [-Wdeprecated-declarations] 3354 | if (rb_rescue(VALUEFUNC(SWIG_AUX_NUM2ULL), (VALUE)a, VALUEFUNC(SWIG_ruby_failed), 0) != Qnil) { | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/ruby/backward/cxxanyargs.hpp:260:1: note: declared here 260 | rb_rescue(type *q, VALUE w, type *e, VALUE r) | ^~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function ‘int SWIG_AsVal_long(VALUE, long int*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:3413:18: warning: ‘VALUE ruby::backward::cxxanyargs::rb_rescue(VALUE (*)(...), VALUE, VALUE (*)(...), VALUE)’ is deprecated: Use of ANYARGS in this function is deprecated [-Wdeprecated-declarations] 3413 | if (rb_rescue(VALUEFUNC(SWIG_AUX_NUM2LONG), (VALUE)a, VALUEFUNC(SWIG_ruby_failed), 0) != Qnil) { | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/ruby/backward/cxxanyargs.hpp:260:1: note: declared here 260 | rb_rescue(type *q, VALUE w, type *e, VALUE r) | ^~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function ‘int SWIG_AsVal_long_SS_long(VALUE, long long int*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:3444:18: warning: ‘VALUE ruby::backward::cxxanyargs::rb_rescue(VALUE (*)(...), VALUE, VALUE (*)(...), VALUE)’ is deprecated: Use of ANYARGS in this function is deprecated [-Wdeprecated-declarations] 3444 | if (rb_rescue(VALUEFUNC(SWIG_AUX_NUM2LL), (VALUE)a, VALUEFUNC(SWIG_ruby_failed), 0) != Qnil) { | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/ruby/backward/cxxanyargs.hpp:260:1: note: declared here 260 | rb_rescue(type *q, VALUE w, type *e, VALUE r) | ^~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In function ‘int SWIG_AsVal_double(VALUE, double*)’: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5354:18: warning: ‘VALUE ruby::backward::cxxanyargs::rb_rescue(VALUE (*)(...), VALUE, VALUE (*)(...), VALUE)’ is deprecated: Use of ANYARGS in this function is deprecated [-Wdeprecated-declarations] 5354 | if (rb_rescue(VALUEFUNC(SWIG_AUX_NUM2DBL), (VALUE)a, VALUEFUNC(SWIG_ruby_failed), 0) != Qnil) { | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/ruby/backward/cxxanyargs.hpp:260:1: note: declared here 260 | rb_rescue(type *q, VALUE w, type *e, VALUE r) | ^~~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In instantiation of ‘Sequence* swig::getslice(const Sequence*, Difference, Difference) [with Sequence = std::__cxx11::basic_string; Difference = long int]’: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5058:116: required from here /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:4084:69: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4084 | typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); | ~~^~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:4084:82: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4084 | typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); | ~~^~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp: In instantiation of ‘Sequence* swig::getslice(const Sequence*, Difference, Difference) [with Sequence = std::__cxx11::basic_string; Difference = int]’: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:5180:118: required from here /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:4084:69: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4084 | typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); | ~~^~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/libsbml_wrap.cpp:4084:82: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4084 | typename Sequence::size_type ii = swig::check_index(i, size, (i == size && j == size)); | ~~^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Linking CXX shared library libSBML.so cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_r_lib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libSBML.so -o libSBML.so CMakeFiles/binding_r_lib.dir/libsbml_wrap.cpp.o -L/usr/lib64/R/lib ../../libsbml-static.a -lR -lbz2 -lz -lminizip -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Built target binding_r_lib make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Linking CXX shared library _libsbml.so cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_python_lib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,_libsbml.so -o _libsbml.so CMakeFiles/binding_python_lib.dir/libsbml_wrap.cpp.o ../../libsbml-static.a -lbz2 -lz -lminizip -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Built target binding_python_lib make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_package.dir/build.make src/bindings/r/CMakeFiles/binding_r_package.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/r /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/CMakeFiles/binding_r_package.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_package.dir/build.make src/bindings/r/CMakeFiles/binding_r_package.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Linking CXX shared library libSBML.so cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_ruby_lib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -Wl,-soname,libSBML.so -o libSBML.so CMakeFiles/binding_ruby_lib.dir/libsbml_wrap.cpp.o ../../libsbml-static.a -lruby -lbz2 -lz -lminizip -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Built target binding_ruby_lib make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Building CXX object src/bindings/perl/CMakeFiles/binding_perl_lib.dir/LibSBML.cpp.o cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl && /usr/bin/g++ -DLIBSBML_COMPILED_IN_SRC -DLINUX -DUSE_BZ2 -DUSE_COMP -DUSE_FBC=1 -DUSE_GROUPS -DUSE_L3V2EXTENDEDMATH -DUSE_LAYOUT -DUSE_LIBXML -DUSE_MULTI -DUSE_QUAL -DUSE_RENDER -DUSE_ZLIB -Dbinding_perl_lib_EXPORTS -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src -I/usr/lib64/perl5/CORE -I/builddir/build/BUILD/libSBML-5.19.0-Source/include -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/constraints -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/common -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/extension -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/util -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator -I/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/constraints -I/usr/include/libxml2 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -fPIC -MD -MT src/bindings/perl/CMakeFiles/binding_perl_lib.dir/LibSBML.cpp.o -MF CMakeFiles/binding_perl_lib.dir/LibSBML.cpp.o.d -o CMakeFiles/binding_perl_lib.dir/LibSBML.cpp.o -c /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl/LibSBML.cpp In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/libsbml.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl/LibSBML_wrap.cpp:2285, from /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl/LibSBML.cpp:9: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/ListOf.h:116:27: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 116 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl/LibSBML_wrap.cpp:1510: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/FbcModelPlugin.h:154, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/fbc-package.h:45, from /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl/../swig/libsbml-packages.h:5, from /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl/LibSBML_wrap.cpp:2289: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/sbml/GeneAssociation.h:590:44: warning: ‘template struct std::unary_function’ is deprecated [-Wdeprecated-declarations] 590 | struct IdEq : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:54, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/layout-package.h:49, from /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl/../swig/libsbml-packages.h:8: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CompartmentGlyph.h:138:30: note: by ‘virtual CompartmentGlyph& CompartmentGlyph::operator=(const CompartmentGlyph&)’ 138 | virtual CompartmentGlyph& operator=(const CompartmentGlyph& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:64, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/layout-package.h:50: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/LineSegment.h:145:24: warning: ‘virtual LineSegment& LineSegment::operator=(const LineSegment&)’ was hidden [-Woverloaded-virtual=] 145 | virtual LineSegment& operator=(const LineSegment& rhs); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/CubicBezier.h:172:24: note: by ‘virtual CubicBezier& CubicBezier::operator=(const CubicBezier&)’ 172 | virtual CubicBezier& operator=(const CubicBezier& orig); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:69, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/layout-package.h:54: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesGlyph.h:136:26: note: by ‘virtual SpeciesGlyph& SpeciesGlyph::operator=(const SpeciesGlyph&)’ 136 | virtual SpeciesGlyph& operator=(const SpeciesGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:71, from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:70: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/SpeciesReferenceGlyph.h:142:35: note: by ‘virtual SpeciesReferenceGlyph& SpeciesReferenceGlyph::operator=(const SpeciesReferenceGlyph&)’ 142 | virtual SpeciesReferenceGlyph& operator=(const SpeciesReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReactionGlyph.h:334:27: note: by ‘virtual ReactionGlyph& ReactionGlyph::operator=(const ReactionGlyph&)’ 334 | virtual ReactionGlyph& operator=(const ReactionGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/Layout.h:71: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/TextGlyph.h:145:22: note: by ‘virtual TextGlyph& TextGlyph::operator=(const TextGlyph&)’ 145 | virtual TextGlyph& operator=(const TextGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/layout-package.h:57: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/ReferenceGlyph.h:141:28: note: by ‘virtual ReferenceGlyph& ReferenceGlyph::operator=(const ReferenceGlyph&)’ 141 | virtual ReferenceGlyph& operator=(const ReferenceGlyph& source); | ^~~~~~~~ /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/GraphicalObject.h:181:29: warning: ‘virtual GraphicalObject& GraphicalObject::operator=(const GraphicalObject&)’ was hidden [-Woverloaded-virtual=] 181 | virtual GraphicalObject& operator=(const GraphicalObject& source); | ^~~~~~~~ In file included from /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl/../swig/layout-package.h:58: /builddir/build/BUILD/libSBML-5.19.0-Somake[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' urce/src/sbml/packages/layout/sbml/GeneralGlyph.h:329:26: note: by ‘virtual GeneralGlyph& GeneralGlyph::operator=(const GeneralGlyph&)’ 329 | virtual GeneralGlyph& operator=(const GeneralGlyph& source); | ^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Create R Package (64bit) cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libSBML.so /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libSBML/inst/libs cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libSBML.R /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libSBML/R cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r && /usr/bin/cmake -DR_INTERPRETER="/usr/bin/R" -P /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/r/create-r-package.cmake -- Created package: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libSBML_5.19.0_R_aarch64-redhat-linux-gnu.tar.gz make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [100%] Built target binding_r_package make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Linking CXX shared module LibSBML.so cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl && /usr/bin/cmake -E cmake_link_script CMakeFiles/binding_perl_lib.dir/link.txt --verbose=1 /usr/bin/g++ -fPIC -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fno-strict-aliasing -fPIC -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -shared -o LibSBML.so CMakeFiles/binding_perl_lib.dir/LibSBML.cpp.o ../../libsbml-static.a -lperl -lbz2 -lz -lminizip -lz -lxml2 make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [100%] Built target binding_perl_lib make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSBML-5.19.0-Source/build/CMakeFiles 0 make: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' + /usr/bin/make -O -j4 V=1 VERBOSE=1 -C build libsbml.pc make: Nothing to be done for 'libsbml.pc'. + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.Oq89ol + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64 ++ dirname /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libSBML-5.19.0-Source + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64 'INSTALL=/usr/bin/install -p' -C build make: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/cmake -S/builddir/build/BUILD/libSBML-5.19.0-Source -B/builddir/build/BUILD/libSBML-5.19.0-Source/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSBML-5.19.0-Source/build/CMakeFiles /builddir/build/BUILD/libSBML-5.19.0-Source/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/CMakeFiles/sbml.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/CMakeFiles/sbml.dir/build.make src/CMakeFiles/sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/CMakeFiles/sbml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 35%] Built target sbml /usr/bin/make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/CMakeFiles/sbml-static.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/CMakeFiles/sbml-static.dir/build.make src/CMakeFiles/sbml-static.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/CMakeFiles/sbml-static.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 69%] Built target sbml-static /usr/bin/make -f src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build.make src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/extension/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build.make src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/comp/extension/test/CMakeFiles/test_comp_extensions.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 70%] Built target test_comp_extensions /usr/bin/make -f src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build.make src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/sbml/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build.make src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/comp/sbml/test/CMakeFiles/test_comp_sbase.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 71%] Built target test_comp_sbase /usr/bin/make -f src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build.make src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/util/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build.make src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/comp/util/test/CMakeFiles/test_comp_util.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 72%] Built target test_comp_util /usr/bin/make -f src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build.make src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build.make src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/comp/validator/test/CMakeFiles/test_comp_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 72%] Built target test_comp_validator /usr/bin/make -f src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build.make src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/fbc/extension/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build.make src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/fbc/extension/test/CMakeFiles/test_sbml_package_fbc.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 72%] Built target test_sbml_package_fbc /usr/bin/make -f src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build.make src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/fbc/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build.make src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/fbc/validator/test/CMakeFiles/test_fbc_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 73%] Built target test_fbc_validator /usr/bin/make -f src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build.make src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/groups/extension/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build.make src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/groups/extension/test/CMakeFiles/test_extension_package_groups.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 73%] Built target test_extension_package_groups /usr/bin/make -f src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build.make src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/groups/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build.make src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/groups/validator/test/CMakeFiles/test_groups_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 73%] Built target test_groups_validator /usr/bin/make -f src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/build.make src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/l3v2extendedmath/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/build.make src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/l3v2extendedmath/validator/test/CMakeFiles/test_l3v2extendedmath_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 73%] Built target test_l3v2extendedmath_validator /usr/bin/make -f src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/build.make src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/build.make src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/l3v2extendedmath/extension/test/CMakeFiles/test_extension_package_l3v2extendedmath.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 74%] Built target test_extension_package_l3v2extendedmath /usr/bin/make -f src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build.make src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/sbml/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build.make src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/layout/sbml/test/CMakeFiles/test_sbml_package_layout.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 76%] Built target test_sbml_package_layout /usr/bin/make -f src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build.make src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build.make src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/layout/validator/test/CMakeFiles/test_layout_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Built target test_layout_validator /usr/bin/make -f src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build.make src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/multi/extension/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build.make src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/multi/extension/test/CMakeFiles/test_sbml_package_multi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Built target test_sbml_package_multi /usr/bin/make -f src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build.make src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/multi/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build.make src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/multi/validator/test/CMakeFiles/test_multi_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Built target test_multi_validator /usr/bin/make -f src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build.make src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/extension/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build.make src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/qual/extension/test/CMakeFiles/test_extension_package_qual.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 77%] Built target test_extension_package_qual /usr/bin/make -f src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build.make src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/sbml/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build.make src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/qual/sbml/test/CMakeFiles/test_sbml_package_qual.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 78%] Built target test_sbml_package_qual /usr/bin/make -f src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build.make src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build.make src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/qual/validator/test/CMakeFiles/test_qual_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 78%] Built target test_qual_validator /usr/bin/make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build.make src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/render/sbml/test/CMakeFiles/test_sbml_package_render.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 81%] Built target test_sbml_package_render /usr/bin/make -f src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build.make src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build.make src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/sbml/packages/render/validator/test/CMakeFiles/test_render_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 82%] Built target test_render_validator /usr/bin/make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/annotation/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build.make src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/sbml/annotation/test/CMakeFiles/test_sbml_annotation.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 83%] Built target test_sbml_annotation /usr/bin/make -f src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build.make src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/conversion/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build.make src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/sbml/conversion/test/CMakeFiles/test_sbml_conversion.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 84%] Built target test_sbml_conversion /usr/bin/make -f src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build.make src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/extension/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build.make src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/sbml/extension/test/CMakeFiles/test_sbml_extension.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 85%] Built target test_sbml_extension /usr/bin/make -f src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build.make src/sbml/math/test/CMakeFiles/test_sbml_math.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/math/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/math/test/CMakeFiles/test_sbml_math.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build.make src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/sbml/math/test/CMakeFiles/test_sbml_math.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 87%] Built target test_sbml_math /usr/bin/make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test/CMakeFiles/test_sbml_sbml.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build.make src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/sbml/test/CMakeFiles/test_sbml_sbml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 95%] Built target test_sbml_sbml /usr/bin/make -f src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build.make src/sbml/units/test/CMakeFiles/test_sbml_units.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/units/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/units/test/CMakeFiles/test_sbml_units.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build.make src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/sbml/units/test/CMakeFiles/test_sbml_units.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 96%] Built target test_sbml_units /usr/bin/make -f src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build.make src/sbml/util/test/CMakeFiles/test_sbml_util.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/util/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/util/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/util/test/CMakeFiles/test_sbml_util.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build.make src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/sbml/util/test/CMakeFiles/test_sbml_util.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 97%] Built target test_sbml_util /usr/bin/make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/validator/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build.make src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/sbml/validator/test/CMakeFiles/test_sbml_validator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 97%] Built target test_sbml_validator /usr/bin/make -f src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build.make src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/xml/test /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/xml/test /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build.make src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/sbml/xml/test/CMakeFiles/test_sbml_xml.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Built target test_sbml_xml /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl/CMakeFiles/binding_perl_swig.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/bindings/perl/CMakeFiles/binding_perl_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Built target binding_perl_swig /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/perl /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/perl/CMakeFiles/binding_perl_lib.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build.make src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/bindings/perl/CMakeFiles/binding_perl_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Built target binding_perl_lib /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make src/bindings/python/CMakeFiles/binding_python_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/CMakeFiles/binding_python_swig.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_swig.dir/build.make src/bindings/python/CMakeFiles/binding_python_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/bindings/python/CMakeFiles/binding_python_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Built target binding_python_swig /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_lib.dir/build.make src/bindings/python/CMakeFiles/binding_python_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/CMakeFiles/binding_python_lib.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/bindings/python/CMakeFiles/binding_python_lib.dir/build.make src/bindings/python/CMakeFiles/binding_python_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/bindings/python/CMakeFiles/binding_python_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Built target binding_python_lib /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/ruby /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/bindings/ruby/CMakeFiles/binding_ruby_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Built target binding_ruby_swig /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/ruby /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build.make src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/bindings/ruby/CMakeFiles/binding_ruby_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Built target binding_ruby_lib /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_swig.dir/build.make src/bindings/r/CMakeFiles/binding_r_swig.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/r /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/CMakeFiles/binding_r_swig.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_swig.dir/build.make src/bindings/r/CMakeFiles/binding_r_swig.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/bindings/r/CMakeFiles/binding_r_swig.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Built target binding_r_swig /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_lib.dir/build.make src/bindings/r/CMakeFiles/binding_r_lib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/r /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/CMakeFiles/binding_r_lib.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_lib.dir/build.make src/bindings/r/CMakeFiles/binding_r_lib.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[2]: Nothing to be done for 'src/bindings/r/CMakeFiles/binding_r_lib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Built target binding_r_lib /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_package.dir/build.make src/bindings/r/CMakeFiles/binding_r_package.dir/depend make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' cd /builddir/build/BUILD/libSBML-5.19.0-Source/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/libSBML-5.19.0-Source /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/r /builddir/build/BUILD/libSBML-5.19.0-Source/build /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/CMakeFiles/binding_r_package.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/make -f src/bindings/r/CMakeFiles/binding_r_package.dir/build.make src/bindings/r/CMakeFiles/binding_r_package.dir/build make[2]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [ 99%] Create R Package (64bit) cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libSBML.so /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libSBML/inst/libs cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r && /usr/bin/cmake -E copy_if_different /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libSBML.R /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libSBML/R cd /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r && /usr/bin/cmake -DR_INTERPRETER="/usr/bin/R" -P /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/r/create-r-package.cmake -- Created package: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libSBML_5.19.0_R_aarch64-redhat-linux-gnu.tar.gz make[2]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' [100%] Built target binding_r_package make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/libSBML-5.19.0-Source/build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/libsbml/COPYING.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/libsbml/FUNDING.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/libsbml/LICENSE.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/libsbml/NEWS.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/libsbml/README.md -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/libsbml/VERSION.txt -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/lib64/pkgconfig/libsbml.pc -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/packages/comp/common/CompExtensionTypes.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/packages/comp/common/compfwd.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/packages/comp/extension/CompExtension.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/packages/comp/extension/CompModelPlugin.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/packages/comp/extension/CompSBMLDocumentPlugin.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/packages/comp/extension/CompSBasePlugin.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/packages/comp/sbml/CompBase.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/packages/comp/sbml/Deletion.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/packages/comp/sbml/ExternalModelDefinition.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/packages/comp/sbml/ListOfDeletions.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/packages/comp/sbml/ListOfExternalModelDefinitions.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/packages/comp/sbml/ListOfModelDefinitions.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/packages/comp/sbml/ListOfPorts.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/packages/comp/sbml/ListOfReplacedElements.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/packages/comp/sbml/ListOfSubmodels.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/packages/comp/sbml/ModelDefinition.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/packages/comp/sbml/Port.h -- Installing: 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/builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/SBMLReader.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/SBMLTransforms.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/SBMLTypeCodes.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/SBMLTypes.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/SBMLVisitor.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/SBMLWriter.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/SBO.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/SBase.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/SimpleSpeciesReference.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/Species.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/SpeciesReference.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/SpeciesType.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/StoichiometryMath.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/SyntaxChecker.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/Trigger.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/Unit.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/UnitDefinition.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/UnitKind.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/common/libsbml-config-common.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/common/libsbml-config-packages.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/common/libsbml-namespace.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/common/libsbml-package.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/common/libsbml-version.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/include/sbml/extension/RegisterExtensions.h -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/lib64/libsbml.so.5.19.0 -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/lib64/libsbml.so.5 -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/lib64/libsbml.so -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/lib64/cmake/sbml-config.cmake -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/lib64/cmake/sbml-config-release.cmake -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/lib64/cmake/sbml-config-version.cmake -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/lib64/libsbml-static.a -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/lib64/cmake/sbml-static-config.cmake -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/lib64/cmake/sbml-static-config-release.cmake -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/lib64/cmake/sbml-static-config-version.cmake -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/lib64/perl5/vendor_perl/LibSBML.pod -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/lib64/perl5/vendor_perl/LibSBML.pm -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/lib64/perl5/vendor_perl/auto/libSBML/LibSBML.so -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/lib64/python3.12/site-packages/libsbml/_libsbml.so -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/lib64/python3.12/site-packages/libsbml.pth -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/lib64/python3.12/site-packages/libsbml/libsbml.py -- Installing: /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/lib64/ruby/vendor_ruby/libSBML.so Notice: the libSBML R interface must be installed separately. To install it, please execute the following shell command: R CMD INSTALL /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r/libSBML_5.19.0_R_aarch64-redhat-linux-gnu.tar.gz make: Leaving directory '/builddir/build/BUILD/libSBML-5.19.0-Source/build' + rm -rf /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/libsbml + mkdir -p /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/lib64/R/library + R CMD INSTALL -l /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/lib64/R/library build/src/bindings/r/libSBML_5.19.0_R_aarch64-redhat-linux-gnu.tar.gz * installing *binary* package ‘libSBML’ ... * DONE (libSBML) + rm -rf /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/lib64/R/library/libSBML/R.css + install -Dm0644 src/bindings/ruby/README.txt /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/doc/libsbml/README-ruby.txt + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 5.19.0-28.fc40 --unique-debug-suffix -5.19.0-28.fc40.aarch64 --unique-debug-src-base libsbml-5.19.0-28.fc40.aarch64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/libSBML-5.19.0-Source find-debuginfo: starting Extracting debug info from 5 files DWARF-compressing 5 files sepdebugcrcfix: Updated 5 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/libsbml-5.19.0-28.fc40.aarch64 cpio: build/src/L3Parser.cpp: Cannot stat: No such file or directory cpio: build/src/L3Parser.ypp: Cannot stat: No such file or directory 138793 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/lib/debug/usr/lib64/python3.12 using python3.12 Bytecompiling .py files below /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/lib64/python3.12 using python3.12 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.k0zYpM + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -mbranch-protection=standard -fasynchronous-unwind-tables -fstack-clash-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd libSBML-5.19.0-Source + pushd build ~/build/BUILD/libSBML-5.19.0-Source/build ~/build/BUILD/libSBML-5.19.0-Source + ctest --force-new-ctest-process -VV -E 'test_ruby_binding|test_perl_binding' UpdateCTestConfiguration from :/builddir/build/BUILD/libSBML-5.19.0-Source/build/DartConfiguration.tcl Parse Config file:/builddir/build/BUILD/libSBML-5.19.0-Source/build/DartConfiguration.tcl UpdateCTestConfiguration from :/builddir/build/BUILD/libSBML-5.19.0-Source/build/DartConfiguration.tcl Parse Config file:/builddir/build/BUILD/libSBML-5.19.0-Source/build/DartConfiguration.tcl Test project /builddir/build/BUILD/libSBML-5.19.0-Source/build Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: test_comp_extensions_run 1: Test command: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/extension/test/test_comp_extensions 1: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/extension/test 1: Environment variables: 1: srcdir=/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/extension/test 1: Test timeout computed to be: 3000 1: Running suite(s): SBMLCompExtensionObjects 1: TestMultipleNamespaces 1: SBMLCompCheckConsistency 1: 100%: Checks: 14, Failures: 0, Errors: 0 1/68 Test #1: test_comp_extensions_run ...................... Passed 0.53 sec test 2 Start 2: test_comp_sbase_run 2: Test command: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/sbml/test/test_comp_sbase 2: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/sbml/test 2: Environment variables: 2: srcdir=/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/sbml/test 2: Test timeout computed to be: 3000 2: Running suite(s): SBMLCompSBaseObjects 2: SBMLCompIdNamspace 2: SBMLCompSBaseObjects 2: comp_deletion 2: comp_externalModelDefinition 2: comp_modelDefinition 2: comp_port 2: comp_replacedBy 2: comp_replacedElement 2: comp_sBaseRef 2: comp_submodel 2: 100%: Checks: 105, Failures: 0, Errors: 0 2/68 Test #2: test_comp_sbase_run ........................... Passed 0.38 sec test 3 Start 3: test_comp_util_run 3: Test command: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/util/test/test_comp_util 3: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/util/test 3: Environment variables: 3: srcdir=/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/util/test 3: Test timeout computed to be: 3000 3: Running suite(s): SBMLCompURIResolvers 3: SBMLCompLevelVersionConversion 3: SBMLCompFlatteningUnknownPackageRefs 3: SBMLCompFlatteningErrorMessages 3: SBMLCompFlatteningConverter 3: ExternalModelResolving 3: SBMLCompFlatteningNewFlags 3: SBMLCompFlatteningConverterStripPackage 3: 100%: Checks: 365, Failures: 0, Errors: 0 3/68 Test #3: test_comp_util_run ............................ Passed 2.45 sec test 4 Start 4: test_comp_validator_run 4: Test command: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/validator/test/test_comp_validator "/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/test" 4: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/comp/validator/test 4: Environment variables: 4: srcdir=/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/test 4: Test timeout computed to be: 3000 4: 4: Validator testrunner 4: ==================== 4: using test data from : /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/comp/validator/test/test-data 4: 4: Testing General XML Consistency Constraints (20000 - 29999). 4: 100%: Checks: 280, Failures: 0 4: Testing Id Consistency Constraints (10300 - 10399). 4: 100%: Checks: 14, Failures: 0 4: Testing Unit Consistency Constraints (10500 - 10599). 4: 100%: Checks: 22, Failures: 0 4/68 Test #4: test_comp_validator_run ....................... Passed 0.55 sec test 5 Start 5: test_sbml_package_fbc_run 5: Test command: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/fbc/extension/test/test_sbml_package_fbc 5: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/fbc/extension/test 5: Environment variables: 5: srcdir=/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/extension/test 5: Test timeout computed to be: 3000 5: Running suite(s): FbcExtension 5: WriteFbcExtension 5: ReadFbcExtension 5: FbcAssociation 5: 100%: Checks: 36, Failures: 0, Errors: 0 5/68 Test #5: test_sbml_package_fbc_run ..................... Passed 0.41 sec test 6 Start 6: test_fbc_validator_run 6: Test command: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/fbc/validator/test/test_fbc_validator "/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/test" 6: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/fbc/validator/test 6: Environment variables: 6: srcdir=/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/test 6: Test timeout computed to be: 3000 6: 6: Validator testrunner 6: ==================== 6: using test data from : /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/fbc/validator/test/test-data 6: 6: Testing General XML Consistency Constraints (20000 - 29999). 6: 100%: Checks: 170, Failures: 0 6: Testing Id Consistency Constraints (10300 - 10399). 6: 100%: Checks: 11, Failures: 0 6/68 Test #6: test_fbc_validator_run ........................ Passed 0.42 sec test 7 Start 7: test_extension_package_groups_run 7: Test command: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/groups/extension/test/test_extension_package_groups 7: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/groups/extension/test 7: Environment variables: 7: srcdir=/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/extension/test 7: Test timeout computed to be: 3000 7: Running suite(s): GroupsExtension 7: WriteGroupsExtension 7: ReadGroupsExtension 7: GroupsModelPlugin 7: 100%: Checks: 25, Failures: 0, Errors: 0 7/68 Test #7: test_extension_package_groups_run ............. Passed 0.26 sec test 8 Start 8: test_groups_validator_run 8: Test command: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/groups/validator/test/test_groups_validator "/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/test" 8: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/groups/validator/test 8: Environment variables: 8: srcdir=/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/test 8: Test timeout computed to be: 3000 8: 8: Validator testrunner 8: ==================== 8: using test data from : /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/groups/validator/test/test-data 8: 8: Testing General XML Consistency Constraints (20000 - 29999). 8: 100%: Checks: 95, Failures: 0 8: Testing Id Consistency Constraints (10300 - 10399). 8: 100%: Checks: 11, Failures: 0 8/68 Test #8: test_groups_validator_run ..................... Passed 0.22 sec test 9 Start 9: test_l3v2extendedmath_validator_run 9: Test command: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/l3v2extendedmath/validator/test/test_l3v2extendedmath_validator "/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/test" 9: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/l3v2extendedmath/validator/test 9: Environment variables: 9: srcdir=/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/test 9: Test timeout computed to be: 3000 9: 9: Validator testrunner 9: ==================== 9: using test data from : /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/validator/test/test-data 9: 9: Testing MathML Consistency Constraints (10200 - 10299). 9: 100%: Checks: 4, Failures: 0 9: Testing Unit Consistency Constraints (10500 - 10599). 9: 100%: Checks: 6, Failures: 0 9/68 Test #9: test_l3v2extendedmath_validator_run ........... Passed 0.23 sec test 10 Start 10: test_extension_package_l3v2extendedmath_run 10: Test command: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test/test_extension_package_l3v2extendedmath 10: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/l3v2extendedmath/extension/test 10: Environment variables: 10: srcdir=/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/l3v2extendedmath/extension/test 10: Test timeout computed to be: 3000 10: Running suite(s): L3v2EMExtension 10: WriteL3v2EMExtension 10: ReadL3v2EMExtension 10: ReadWriteL3v2Infix 10: 100%: Checks: 18, Failures: 0, Errors: 0 10/68 Test #10: test_extension_package_l3v2extendedmath_run ... Passed 0.23 sec test 11 Start 11: test_sbml_package_layout_run 11: Test command: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/sbml/test/test_sbml_package_layout 11: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/sbml/test 11: Environment variables: 11: srcdir=/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/sbml/test 11: Test timeout computed to be: 3000 11: Running suite(s): Point 11: Dimensions 11: BoundingBox 11: LineSegment 11: CubicBezier 11: Curve 11: GraphicalObject 11: CompartmentGlyph 11: SpeciesGlyph 11: ReactionGlyph 11: GeneralGlyph 11: ReferenceGlyph 11: SpeciesReferenceGlyph 11: TextGlyph 11: Layout 11: LayoutCreation 11: LayoutFormatter 11: SBMLHandler 11: LayoutWriting 11: 100%: Checks: 288, Failures: 0, Errors: 0 11/68 Test #11: test_sbml_package_layout_run .................. Passed 0.74 sec test 12 Start 12: test_layout_validator_run 12: Test command: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/validator/test/test_layout_validator "/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/test" 12: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/layout/validator/test 12: Environment variables: 12: srcdir=/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/test 12: Test timeout computed to be: 3000 12: 12: Validator testrunner 12: ==================== 12: using test data from : /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/layout/validator/test/test-data 12: 12: Testing General XML Consistency Constraints (20000 - 29999). 12: 100%: Checks: 223, Failures: 0 12: Testing Id Consistency Constraints (10300 - 10399). 12: 100%: Checks: 18, Failures: 0 12/68 Test #12: test_layout_validator_run ..................... Passed 0.61 sec test 13 Start 13: test_sbml_package_multi_run 13: Test command: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/multi/extension/test/test_sbml_package_multi 13: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/multi/extension/test 13: Environment variables: 13: srcdir=/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/extension/test 13: Test timeout computed to be: 3000 13: Running suite(s): MultiExtension 13: MultiCheckConsistency 13: MultiAST 13: 100%: Checks: 16, Failures: 0, Errors: 0 13/68 Test #13: test_sbml_package_multi_run ................... Passed 0.33 sec test 14 Start 14: test_multi_validator_run 14: Test command: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/multi/validator/test/test_multi_validator "/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/test" 14: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/multi/validator/test 14: Environment variables: 14: srcdir=/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/test 14: Test timeout computed to be: 3000 14: 14: Validator testrunner 14: ==================== 14: using test data from : /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/multi/validator/test/test-data 14: 14: Testing MathML Consistency Constraints (10200 - 10299). 14: 100%: Checks: 5, Failures: 0 14: Testing General XML Consistency Constraints (20000 - 29999). 14: 100%: Checks: 123, Failures: 0 14: Testing Id Consistency Constraints (10300 - 10999). 14: 100%: Checks: 16, Failures: 0 14/68 Test #14: test_multi_validator_run ...................... Passed 0.30 sec test 15 Start 15: test_extension_package_qual_run 15: Test command: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/extension/test/test_extension_package_qual 15: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/extension/test 15: Environment variables: 15: srcdir=/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/extension/test 15: Test timeout computed to be: 3000 15: Running suite(s): QualExtension 15: WriteQualExtension 15: ReadQualExtension 15: GetAllElements 15: 100%: Checks: 20, Failures: 0, Errors: 0 15/68 Test #15: test_extension_package_qual_run ............... Passed 0.27 sec test 16 Start 16: test_sbml_package_qual_run 16: Test command: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/sbml/test/test_sbml_package_qual 16: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/sbml/test 16: Environment variables: 16: srcdir=/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/sbml/test 16: Test timeout computed to be: 3000 16: Running suite(s): Input 16: Output 16: FunctionTerm 16: Transition 16: QualitativeSpecies 16: DefaultTerm 16: ListOfFunctionTerms 16: CopyAndClone 16: 100%: Checks: 73, Failures: 0, Errors: 0 16/68 Test #16: test_sbml_package_qual_run .................... Passed 0.25 sec test 17 Start 17: test_qual_validator_run 17: Test command: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/validator/test/test_qual_validator "/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/test" 17: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/qual/validator/test 17: Environment variables: 17: srcdir=/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/test 17: Test timeout computed to be: 3000 17: 17: Validator testrunner 17: ==================== 17: using test data from : /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/qual/validator/test/test-data 17: 17: Testing General XML Consistency Constraints (20000 - 29999). 17: 100%: Checks: 81, Failures: 0 17: Testing Id Consistency Constraints (10300 - 10399). 17: 100%: Checks: 4, Failures: 0 17: Testing Math Consistency Constraints (10200 - 10299). 17: 100%: Checks: 3, Failures: 0 17/68 Test #17: test_qual_validator_run ....................... Passed 0.29 sec test 18 Start 18: test_sbml_package_render_run 18: Test command: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test/test_sbml_package_render 18: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/sbml/test 18: Environment variables: 18: srcdir=/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/sbml/test 18: Test timeout computed to be: 3000 18: Running suite(s): RenderExtension 18: RelAbsVector 18: ColorDefinition 18: GradientStop 18: RenderPoint 18: RenderCubicBezier 18: GradientBaseTest 18: LinearGradient 18: RadialGradient 18: Transformation 18: Transformation2D 18: Image 18: GraphicalPrimitive1D 18: RenderCurve 18: Text 18: GraphicalPrimitive2D 18: Rectangle 18: Ellipse 18: Polygon 18: Group 18: LineEnding 18: Style 18: GlobalStyle 18: LocalStyle 18: RenderInformationBase 18: GlobalRenderInformation 18: LocalRenderInformation 18: RenderReading 18: RenderWriting 18: 100%: Checks: 136, Failures: 0, Errors: 0 18/68 Test #18: test_sbml_package_render_run .................. Passed 0.89 sec test 19 Start 19: test_render_validator_run 19: Test command: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/validator/test/test_render_validator "/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/test" 19: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/packages/render/validator/test 19: Environment variables: 19: srcdir=/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/test 19: Test timeout computed to be: 3000 19: 19: Validator testrunner 19: ==================== 19: using test data from : /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/packages/render/validator/test/test-data 19: 19: Testing General XML Consistency Constraints (20000 - 29999). 19: 100%: Checks: 111, Failures: 0 19/68 Test #19: test_render_validator_run ..................... Passed 0.36 sec test 20 Start 20: test_sbml_annotation_run 20: Test command: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/annotation/test/test_sbml_annotation 20: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/annotation/test 20: Environment variables: 20: srcdir=/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/annotation/test 20: Test timeout computed to be: 3000 20: Running suite(s): CVTerms 20: CVTerms_newSetters 20: ModelHistory 20: Date_newSetters 20: ModelCreator_newSetters 20: ModelHistory_newSetters 20: CopyAndClone 20: RDFAnnotation 20: RDFAnnotation2 20: Validation 20: RDFAnnotation_C 20: L3ModelHistory 20: SyncAnnotation 20: RDFAnnotationMetaid 20: RDFAnnotationNestedCVTerm 20: RDFAnnotationV4 20: 100%: Checks: 182, Failures: 0, Errors: 0 20/68 Test #20: test_sbml_annotation_run ...................... Passed 0.55 sec test 21 Start 21: test_sbml_conversion_run 21: Test command: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/conversion/test/test_sbml_conversion 21: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/conversion/test 21: Environment variables: 21: srcdir=/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/conversion/test 21: Test timeout computed to be: 3000 21: Running suite(s): ConversionOption 21: SBMLRuleConverter 21: ConversionProperties 21: SBMLConverterRegistry 21: UnitsConverter 21: UnitsConverter2 21: UnitsConverterL2 21: InferUnitsConverter 21: StripPackageConverter 21: LevelVersionConverter 21: RateOfConverter 21: 100%: Checks: 173, Failures: 0, Errors: 0 21/68 Test #21: test_sbml_conversion_run ...................... Passed 0.82 sec test 22 Start 22: test_sbml_extension_run 22: Test command: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/extension/test/test_sbml_extension 22: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/extension/test 22: Environment variables: 22: srcdir=/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/extension/test 22: Test timeout computed to be: 3000 22: Running suite(s): SBaseExtensionPoint 22: SBasePlugin 22: SBasePluginCreator 22: SBasePluginCreatorBase 22: SBMLDocumentPlugin 22: SBMLExtension 22: SBMLExtensionNamespaces 22: SBMLExtensionRegistry 22: TestUnknownPackages 22: 100%: Checks: 30, Failures: 0, Errors: 0 22/68 Test #22: test_sbml_extension_run ....................... Passed 0.24 sec test 23 Start 23: test_sbml_math_run 23: Test command: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/math/test/test_sbml_math 23: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/math/test 23: Environment variables: 23: srcdir=/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/math/test 23: Test timeout computed to be: 3000 23: Running suite(s): ASTNode 23: FormulaFormatter 23: FormulaParser 23: L3FormulaFormatter 23: L3FormulaParser 23: L3FormulaParserC 23: FormulaTokenizer 23: ReadMathML 23: WriteMathML 23: WriteMathMLFromAST 23: test-data/mathML_1.xml 23: test-data/mathML_2.xml 23: TestValidASTNode 23: TestChildFunctions 23: TestGetValue 23: test-data/L3V2Math.xml 23: 100%: Checks: 686, Failures: 0, Errors: 0 23/68 Test #23: test_sbml_math_run ............................ Passed 1.15 sec test 24 Start 24: test_sbml_sbml_run 24: Test command: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test/test_sbml_sbml 24: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/test 24: Environment variables: 24: srcdir=/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/test 24: Test timeout computed to be: 3000 24: Running suite(s): ReadSBML 24: SBMLValidator API 24: RenameIDs 24: RemoveFromParent 24: GetMultipleObjects 24: WriteSBML 24: WriteL3SBML 24: WriteL3V2SBML 24: AlgebraicRule 24: AssignmentRule 24: Compartment 24: L3_Compartment 24: Compartment_newSetters 24: CompartmentType 24: CompartmentType_newSetters 24: CompartmentVolumeRule 24: Constraint 24: Constraint_newSetters 24: Delay 24: Event 24: L3_Event 24: Event_newSetters 24: EventAssignment 24: EventAssignment_newSetters 24: FunctionDefinition 24: FunctionDefinition_newSetters 24: InitialAssignment 24: InitialAssignment_newSetters 24: KineticLaw 24: KineticLaw_newSetters 24: L3_KineticLaw 24: ListOf 24: Model 24: L3_Model 24: Model_newSetters 24: ModifierSpeciesReference 24: Parameter 24: L3_Parameter 24: L3_LocalParameter 24: Parameter_newSetters 24: ParameterRule 24: Priority 24: RateRule 24: Reaction 24: L3_Reaction 24: Reaction_newSetters 24: Rule 24: Rule_newSetters 24: SBase 24: SBase_newSetters 24: Species 24: L3_Species 24: Species_newSetters 24: SpeciesReference 24: L3_SpeciesReference 24: SpeciesReference_newSetters 24: SpeciesConcentrationRule 24: SpeciesType 24: SpeciesType_newSetters 24: StoichiometryMath 24: Trigger 24: L3Trigger 24: Unit 24: L3_Unit 24: Unit_newSetters 24: UnitDefinition 24: UnitDefinition_newSetters 24: UnitKind 24: CopyAndClone 24: SBMLConvert 24: SBMLConvertStrict 24: SBMLConvertFromL3V2 24: SBMLDocument 24: SBMLError 24: test-data/l1v1-branch.xml 24: test-data/l1v1-units.xml 24: test-data/l1v1-rules.xml 24: test-data/l1v1-minimal.xml 24: test-data/l2v1-assignment.xml 24: test-data/l2v2-newComponents.xml 24: test-data/l2v3-all.xml 24: test-data/l2v4-new.xml 24: test-data/l3v1-new.xml 24: test-data/l2v5-all.xml 24: test-data/l3v2-all.xml 24: test-data/l3v2-no-model.xml 24: test-data/l3v2-empty-lo-1.xml 24: test-data/l3v2-empty-lo-2.xml 24: test-data/l3v2-empty-math.xml 24: test-data/l3v2-empty-event.xml 24: test-data/l3v2-empty-event2.xml 24: ConsistencyChecks 24: ParentObject 24: AncestorObject 24: InternalConsistencyChecks 24: HasReqdAtt 24: HasReqdElements 24: SBMLNamespaces 24: SyntaxChecker 24: SBMLConstructorException 24: SBMLTransforms 24: GetMultipleObjects 24: LevelCompatibility 24: SBaseIdName 24: Generic Attribute Functions 24: 100%: Checks: 1735, Failures: 0, Errors: 0 24/68 Test #24: test_sbml_sbml_run ............................ Passed 3.40 sec test 25 Start 25: test_sbml_units_run 25: Test command: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/units/test/test_sbml_units 25: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/units/test 25: Environment variables: 25: srcdir=/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/units/test 25: Test timeout computed to be: 3000 25: Running suite(s): UtilsUnit 25: UtilsUnitDefinition 25: UnitFormulaFormatter 25: UnitFormulaFormatter1 25: FormulaUnitData 25: FormulaUnitDataMap 25: DerivedUnitDefinition 25: UnitFormulaFormatter2 25: CalcUnitDefinition 25: UnitFormulaFormatter3 25: DerivedUnitDefinitionUndefined 25: 100%: Checks: 178, Failures: 0, Errors: 0 25/68 Test #25: test_sbml_units_run ........................... Passed 0.77 sec test 26 Start 26: test_sbml_util_run 26: Test command: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/util/test/test_sbml_util 26: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/util/test 26: Test timeout computed to be: 3000 26: Running suite(s): memory 26: util 26: List 26: Stack 26: StringBuffer 26: 100%: Checks: 57, Failures: 0, Errors: 0 26/68 Test #26: test_sbml_util_run ............................ Passed 0.04 sec test 27 Start 27: test_sbml_validator_run 27: Test command: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/validator/test/test_sbml_validator "/builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/test" 27: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/validator/test 27: Test timeout computed to be: 3000 27: 27: Validator testrunner 27: ==================== 27: using test data from : /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/test/test-data 27: using conversion test data from: /builddir/build/BUILD/libSBML-5.19.0-Source/src/sbml/validator/test/test-data-conversion 27: 27: Testing Bad XML Constraints (0000 - 10000). 27: 100%: Checks: 55, Failures: 0 27: Testing General XML Consistency Constraints (10000 - 10199). 27: 100%: Checks: 197, Failures: 0 27: Testing General MathML Consistency Constraints (10200 - 10299). 27: 100%: Checks: 517, Failures: 0 27: Testing Id Consistency Constraints (10300 - 10399). 27: 100%: Checks: 509, Failures: 0 27: Testing General Annotation Consistency Constraints (10400 - 10499). 27: 100%: Checks: 65, Failures: 0 27: Testing Unit Consistency Constraints (10500 - 10599). 27: 100%: Checks: 1172, Failures: 0 27: Testing Unit Consistency Constraints (20000 - 29999). 27: 100%: Checks: 362, Failures: 0 27: Testing Overdetermined Constraints (10600 - 10699). 27: 100%: Checks: 31, Failures: 0 27: Testing SBO Consistency Constraints (10700 - 10799). 27: 100%: Checks: 206, Failures: 0 27: Testing General Notes Consistency Constraints (10800 - 19999). 27: 100%: Checks: 92, Failures: 0 27: Testing Model Consistency Constraints (20000 - 29999). 27: 100%: Checks: 2300, Failures: 0 27: Testing L1 Compatibility Constraints (91000 - 91999). 27: 100%: Checks: 91, Failures: 0 27: Testing L2v1 Compatibility Constraints (92000 - 92999). 27: 100%: Checks: 38, Failures: 0 27: Testing L2v2 Compatibility Constraints (93000 - 93999). 27: 100%: Checks: 23, Failures: 0 27: Testing L2v3 Compatibility Constraints (94000 - 94999). 27: 100%: Checks: 22, Failures: 0 27: Testing L2v4 Compatibility Constraints (95000 - 95999). 27: 100%: Checks: 21, Failures: 0 27: Testing L3v1 Compatibility Constraints (96000 - 96999). 27: 100%: Checks: 31, Failures: 0 27: Testing L1 for New Compatibility Constraints (98000 - 98999). 27: 100%: Checks: 39, Failures: 0 27: Testing L2v1 for New Compatibility Constraints (98000 - 98999). 27: 100%: Checks: 39, Failures: 0 27: Testing L2v2 for New Compatibility Constraints (98000 - 98999). 27: 100%: Checks: 39, Failures: 0 27: Testing L2v3 for New Compatibility Constraints (98000 - 98999). 27: 100%: Checks: 39, Failures: 0 27: Testing L3v1 for New Compatibility Constraints (98000 - 98999). 27: 100%: Checks: 39, Failures: 0 27: Testing New Compatibility Constraints (98000 - 98999). 27: 100%: Checks: 39, Failures: 0 27: Testing Additional SBML Constraints (99100 - 99108). 27: 100%: Checks: 31, Failures: 0 27: Testing Additional SBML Constraints (99129 - 99199). 27: 100%: Checks: 56, Failures: 0 27: Testing Additional Math Constraints (99200 - 99299). 27: 100%: Checks: 140, Failures: 0 27: Testing Additional SBML Constraints (99300 - 99399). 27: 100%: Checks: 16, Failures: 0 27: Testing Additional Annotation Constraints (99400 - 99499). 27: 100%: Checks: 28, Failures: 0 27: Testing Additional Unit Constraints (99127 - 99128). 27: 100%: Checks: 36, Failures: 0 27: Testing Additional Unit Constraints (99500 - 99599). 27: 100%: Checks: 175, Failures: 0 27: Testing Additional SBO Constraints (99700 - 99799). 27: 100%: Checks: 30, Failures: 0 27: Testing Modeling Practice Constraints (80000 - 89999). 27: 100%: Checks: 56, Failures: 0 27/68 Test #27: test_sbml_validator_run ....................... Passed 4.91 sec test 28 Start 28: test_sbml_xml_run 28: Test command: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/xml/test/test_sbml_xml 28: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/sbml/xml/test 28: Test timeout computed to be: 3000 28: Running suite(s): XMLAttributes 28: CopyAndClone 28: XMLNamespaces 28: XMLTriple 28: XMLToken 28: XMLToken_newSetters 28: XMLNode 28: XMLNode_newSetters 28: XMLError 28: XMLErrorC 28: XMLErrorLog 28: XMLInputStream 28: XMLOutputStream 28: 28: XMLAttributesC 28: XMLExceptions 28: 100%: Checks: 129, Failures: 0, Errors: 0 28/68 Test #28: test_sbml_xml_run ............................. Passed 0.33 sec test 29 Start 29: test_python_binding 29: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/test.py" "-p" "/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python" "-b" "/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/test" 29: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 29: Test timeout computed to be: 3000 29: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python/test.py:55: DeprecationWarning: unittest.makeSuite() is deprecated and will be removed in Python 3.13. Please use unittest.TestLoader.loadTestsFromTestCase() instead. 29: suite.addTest(unittest.makeSuite(class_name)) 29: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/test/sbml/TestReadSBML.py:49: SyntaxWarning: invalid escape sequence '\s' 29: re_expat = re.compile('^ USE_EXPAT \s* = \s* 1', re.X) 29: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/test/sbml/TestReadSBML.py:50: SyntaxWarning: invalid escape sequence '\s' 29: re_libxml = re.compile('^ USE_LIBXML \s* = \s* 1', re.X) 29: /builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/test/sbml/TestReadSBML.py:51: SyntaxWarning: invalid escape sequence '\s' 29: re_xerces = re.compile('^ USE_XERCES \s* = \s* 1', re.X) 29: ........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 29: ................................................................................................................................................................................................................................................................................................................................................................................................................ 29: ---------------------------------------------------------------------- 29: Ran 1819 tests in 0.233s 29: 29: OK 29/68 Test #29: test_python_binding ........................... Passed 1.00 sec test 30 Start 30: test_python_printversion 30: Test command: /usr/bin/python3 "-c" "import libsbml; assert libsbml.getLibSBMLDottedVersion() == '5.19.0'" "-p" "/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python" "-b" "/builddir/build/BUILD/libSBML-5.19.0-Source/src/bindings/python/test" 30: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 30: Environment variables: 30: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 30: Test timeout computed to be: 3000 30/68 Test #30: test_python_printversion ...................... Passed 0.11 sec test 31 Start 31: test_python_addCVTerms 31: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/addCVTerms.py" "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "addCVTerms.out.xml" 31: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 31: Environment variables: 31: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 31: Test timeout computed to be: 3000 31/68 Test #31: test_python_addCVTerms ........................ Passed 0.11 sec test 32 Start 32: test_python_addingEvidenceCodes_1 32: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/addingEvidenceCodes_1.py" "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "addingEvidenceCodes_1.out.xml" 32: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 32: Environment variables: 32: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 32: Test timeout computed to be: 3000 32/68 Test #32: test_python_addingEvidenceCodes_1 ............. Passed 0.11 sec test 33 Start 33: test_python_addingEvidenceCodes_2 33: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/addingEvidenceCodes_2.py" "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "addingEvidenceCodes_2.out.xml" 33: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 33: Environment variables: 33: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 33: Test timeout computed to be: 3000 33/68 Test #33: test_python_addingEvidenceCodes_2 ............. Passed 0.11 sec test 34 Start 34: test_python_addModelHistory 34: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/addModelHistory.py" "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "addModelHistory.out.xml" 34: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 34: Environment variables: 34: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 34: Test timeout computed to be: 3000 34: Status for addCreator: succeeded 34: Set created date: succeeded 34: Set modified date: succeeded 34: Set model history: unknown 34/68 Test #34: test_python_addModelHistory ................... Passed 0.11 sec test 35 Start 35: test_python_append_to_note 35: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/append_to_note.py" "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekineticext.xml" "veq" "a new note" "append_to_note.out.xml" 35: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 35: Environment variables: 35: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 35: Test timeout computed to be: 3000 35: Body before change: 35: 35:

Some notes

35: 35: 35: Body after change: 35: 35:

Some notes

a new note 35/68 Test #35: test_python_append_to_note .................... Passed 0.11 sec test 36 Start 36: test_python_appendAnnotation 36: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/appendAnnotation.py" "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "appendAnnotation.out.xml" 36: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 36: Environment variables: 36: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 36: Test timeout computed to be: 3000 36/68 Test #36: test_python_appendAnnotation .................. Passed 0.11 sec test 37 Start 37: test_python_convertSBML 37: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/convertSBML.py" "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "convertSBML.out.xml" 37: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 37: Environment variables: 37: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 37: Test timeout computed to be: 3000 37: Attempting to convert Level 3 Version 1 model to Level 3 Version 2. 37: 37: Conversion completed. 37: 37/68 Test #37: test_python_convertSBML ....................... Passed 0.12 sec test 38 Start 38: test_python_createExampleSBML 38: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/createExampleSBML.py" "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "createExampleSBMLy.out.xml" 38: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 38: Environment variables: 38: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 38: Test timeout computed to be: 3000 38: line 1: (99505 [Warning]) In situations where a mathematical expression contains literal numbers or parameters whose units have not been declared, it is not possible to verify accurately the consistency of the units in the expression. 38: The units of the expression 'f(S1) * compartmentOne / t' cannot be fully checked. Unit consistency reported as either no errors or further unit errors related to this object may not be accurate. 38: 38: Wrote file 'enzymaticreaction.xml' 38: Wrote file 'units.xml' 38: 38: Notice: encountered 1 validation warning in model 'functionExample'. 38: 38: Wrote file 'functiondef.xml' 38/68 Test #38: test_python_createExampleSBML ................. Passed 0.13 sec test 39 Start 39: test_python_createSimpleModel 39: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/createSimpleModel.py" "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "createSimpleModel.out.xml" 39: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 39: Environment variables: 39: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 39: Test timeout computed to be: 3000 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: 39: k 39: s1 39: c1 39: 39: 39: 39: 39: 39: 39: 39: 39/68 Test #39: test_python_createSimpleModel ................. Passed 0.11 sec test 40 Start 40: test_python_echoSBML 40: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/echoSBML.py" "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "echoSBML.out.xml" 40: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 40: Environment variables: 40: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 40: Test timeout computed to be: 3000 40: [OK] Echoed /builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml to echoSBML.out.xml 40/68 Test #40: test_python_echoSBML .......................... Passed 0.11 sec test 41 Start 41: test_python_evaluateCustomMath 41: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/evaluateCustomMath.py" "2*3+4" "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 41: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 41: Environment variables: 41: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 41: Test timeout computed to be: 3000 41: 2*3+4 = 10.0 41/68 Test #41: test_python_evaluateCustomMath ................ Passed 0.11 sec test 42 Start 42: test_python_getAllElementsWithNotes 42: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/getAllElementsWithNotes.py" "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 42: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 42: Environment variables: 42: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 42: Test timeout computed to be: 3000 42: 42: filename: /builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml 42: read time (ms): 1.092041015625 42: searching ......: 42: search time (ms): 0.11474609375 42: elements with notes: 0 42/68 Test #42: test_python_getAllElementsWithNotes ........... Passed 0.11 sec test 43 Start 43: test_python_inlineInitialAssignments 43: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/inlineInitialAssignments.py" "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "inlineInitialAssignments.out.xml" 43: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 43: Environment variables: 43: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 43: Test timeout computed to be: 3000 43/68 Test #43: test_python_inlineInitialAssignments .......... Passed 0.11 sec test 44 Start 44: test_python_printAnnotation 44: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/printAnnotation.py" "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 44: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 44: Environment variables: 44: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 44: Test timeout computed to be: 3000 44: filename: /builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml 44: 44/68 Test #44: test_python_printAnnotation ................... Passed 0.11 sec test 45 Start 45: test_python_printMath 45: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/printMath.py" "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 45: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 45: Environment variables: 45: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 45: Test timeout computed to be: 3000 45: 45: Reaction 1, formula: comp * (kon * E * S - koff * ES) 45: 45: Reaction 2, formula: comp * kcat * ES 45: 45: 45: 45/68 Test #45: test_python_printMath ......................... Passed 0.12 sec test 46 Start 46: test_python_printRegisteredPackages 46: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/printRegisteredPackages.py" "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "printRegisteredPackages.out.xml" 46: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 46: Environment variables: 46: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 46: Test timeout computed to be: 3000 46: This version of LibSBML: 5.19.0 includes: 46: 46: comp 46: fbc 46: groups 46: layout 46: render 46: l3v2extendedmath 46: multi 46: qual 46: 46: 46/68 Test #46: test_python_printRegisteredPackages ........... Passed 0.11 sec test 47 Start 47: test_python_printSBML 47: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/printSBML.py" "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 47: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 47: Environment variables: 47: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 47: Test timeout computed to be: 3000 47: 47: File: /builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml (Level 3, version 1) 47: id: (empty) 47: functionDefinitions: 0 47: unitDefinitions: 2 47: compartmentTypes: 0 47: specieTypes: 0 47: compartments: 1 47: species: 4 47: parameters: 0 47: initialAssignments: 0 47: rules: 0 47: constraints: 0 47: reactions: 2 47: events: 0 47: 47: 47/68 Test #47: test_python_printSBML ......................... Passed 0.11 sec test 48 Start 48: test_python_printsupported 48: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/printsupported.py" 48: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 48: Environment variables: 48: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 48: Test timeout computed to be: 3000 48: Supported by LibSBML 5.19.0 48: 48: SBML Level: 1 Version: 1 48: SBML Level: 1 Version: 2 48: SBML Level: 2 Version: 1 48: SBML Level: 2 Version: 2 48: SBML Level: 2 Version: 3 48: SBML Level: 2 Version: 4 48: SBML Level: 2 Version: 5 48: SBML Level: 3 Version: 1 48: SBML Level: 3 Version: 2 48: 48/68 Test #48: test_python_printsupported .................... Passed 0.11 sec test 49 Start 49: test_python_printUnits 49: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/printUnits.py" "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 49: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 49: Environment variables: 49: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 49: Test timeout computed to be: 3000 49: Species 0: mole (exponent = 1, multiplier = 1, scale = 0), litre (exponent = -1, multiplier = 1, scale = 0) 49: Species 1: mole (exponent = 1, multiplier = 1, scale = 0), litre (exponent = -1, multiplier = 1, scale = 0) 49: Species 2: mole (exponent = 1, multiplier = 1, scale = 0), litre (exponent = -1, multiplier = 1, scale = 0) 49: Species 3: mole (exponent = 1, multiplier = 1, scale = 0), litre (exponent = -1, multiplier = 1, scale = 0) 49: Compartment 0: litre (exponent = 1, multiplier = 1, scale = 0) 49: Reaction 0: 49: Kinetic Law: second (exponent = -1, multiplier = 1, scale = 0), mole (exponent = 1, multiplier = 1, scale = 0) 49: undeclared units: no 49: Reaction 1: 49: Kinetic Law: second (exponent = -1, multiplier = 1, scale = 0), mole (exponent = 1, multiplier = 1, scale = 0) 49: undeclared units: no 49/68 Test #49: test_python_printUnits ........................ Passed 0.12 sec test 50 Start 50: test_python_promoteParameters 50: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/promoteParameters.py" "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "promoteParameters.out.xml" 50: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 50: Environment variables: 50: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 50: Test timeout computed to be: 3000 50: [OK] wrote promoteParameters.out.xml 50/68 Test #50: test_python_promoteParameters ................. Passed 0.11 sec test 51 Start 51: test_python_readSBML 51: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/readSBML.py" "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 51: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 51: Environment variables: 51: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 51: Test timeout computed to be: 3000 51: 51: filename: /builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml 51: file size: 3930 51: read time (ms): 0.0011903160000000107 51: validation error(s): 0 51: 51/68 Test #51: test_python_readSBML .......................... Passed 0.11 sec test 52 Start 52: test_python_replaceOneFD 52: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/replaceOneFD.py" "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/functiondef.xml" "f" "reaction_1" "replaceOneFD.out.xml" 52: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 52: Environment variables: 52: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 52: Test timeout computed to be: 3000 52/68 Test #52: test_python_replaceOneFD ...................... Passed 0.11 sec test 53 Start 53: test_python_setIdFromNames 53: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/setIdFromNames.py" "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "setIdFromNames.out.xml" 53: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 53: Environment variables: 53: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 53: Test timeout computed to be: 3000 53: 53: filename: /builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml 53: read time (ms): 1.126708984375 53: rename time (ms): 0.107666015625 53: write time (ms): 0.308837890625 53: 53/68 Test #53: test_python_setIdFromNames .................... Passed 0.11 sec test 54 Start 54: test_python_unsetAnnotation 54: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/unsetAnnotation.py" "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "unsetAnnotation.out.xml" 54: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 54: Environment variables: 54: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 54: Test timeout computed to be: 3000 54/68 Test #54: test_python_unsetAnnotation ................... Passed 0.11 sec test 55 Start 55: test_python_unsetNotes 55: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/unsetNotes.py" "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" "unsetNotes.out.xml" 55: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 55: Environment variables: 55: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 55: Test timeout computed to be: 3000 55/68 Test #55: test_python_unsetNotes ........................ Passed 0.11 sec test 56 Start 56: test_python_validateSBML 56: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/validateSBML.py" "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 56: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 56: Environment variables: 56: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 56: Test timeout computed to be: 3000 56: --------------------------------------------------------------------------- 56: filename : /builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml 56: file size (byte) : 3930 56: read time (ms) : 1.106024 56: c-check time (ms) : 1.835346 56: validation error(s) : 0 56: (consistency error(s)): 0 56: validation warning(s) : 0 56: (consistency warning(s)): 0 56: --------------------------------------------------------------------------- 56: Validated 1 files, 1 valid files, 0 invalid files 56/68 Test #56: test_python_validateSBML ...................... Passed 0.11 sec test 57 Start 57: test_python_stringInput 57: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/stringInput.py" "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml" 57: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 57: Environment variables: 57: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 57: Test timeout computed to be: 3000 57: filename: /builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/from-spec/level-3/enzymekinetics.xml 57: 57: 57: 57/68 Test #57: test_python_stringInput ....................... Passed 0.11 sec test 58 Start 58: test_python_stripPackage 58: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/stripPackage.py" "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/fbc/fbc_example1.xml" "fbc" "stripPackage.out.xml" 58: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 58: Environment variables: 58: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 58: Test timeout computed to be: 3000 58: [OK] stripped package 'fbc' from /builddir/build/BUILD/libSBML-5.19.0-Source/examples/sample-models/fbc/fbc_example1.xml to stripPackage.out.xml 58/68 Test #58: test_python_stripPackage ...................... Passed 0.11 sec test 59 Start 59: test_python_fbc_fbc_example1 59: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/fbc/fbc_example1.py" 59: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 59: Environment variables: 59: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 59: Test timeout computed to be: 3000 59/68 Test #59: test_python_fbc_fbc_example1 .................. Passed 0.11 sec test 60 Start 60: test_python_groups_groups_example1 60: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/groups/groups_example1.py" 60: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 60: Environment variables: 60: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 60: Test timeout computed to be: 3000 60/68 Test #60: test_python_groups_groups_example1 ............ Passed 0.11 sec test 61 Start 61: test_python_layout_example1_L3 61: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/layout/example1-L3.py" 61: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 61: Environment variables: 61: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 61: Test timeout computed to be: 3000 61/68 Test #61: test_python_layout_example1_L3 ................ Passed 0.11 sec test 62 Start 62: test_python_layout_example1 62: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/layout/example1.py" 62: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 62: Environment variables: 62: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 62: Test timeout computed to be: 3000 62/68 Test #62: test_python_layout_example1 ................... Passed 0.11 sec test 63 Start 63: test_python_multi_multi_example1 63: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/multi/multi_example1.py" 63: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 63: Environment variables: 63: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 63: Test timeout computed to be: 3000 63/68 Test #63: test_python_multi_multi_example1 .............. Passed 0.11 sec test 64 Start 64: test_python_multi_multi_example2 64: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/multi/multi_example2.py" 64: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 64: Environment variables: 64: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 64: Test timeout computed to be: 3000 64/68 Test #64: test_python_multi_multi_example2 .............. Passed 0.11 sec test 65 Start 65: test_python_multi_multi_example3 65: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/multi/multi_example3.py" 65: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 65: Environment variables: 65: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 65: Test timeout computed to be: 3000 65/68 Test #65: test_python_multi_multi_example3 .............. Passed 0.11 sec test 66 Start 66: test_python_multi_printMulti 66: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/multi/printMulti.py" 66: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 66: Environment variables: 66: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 66: Test timeout computed to be: 3000 66: usage: printMulti sbml-file 66/68 Test #66: test_python_multi_printMulti .................. Passed 0.11 sec test 67 Start 67: test_python_qual_qual_example1 67: Test command: /usr/bin/python3 "/builddir/build/BUILD/libSBML-5.19.0-Source/examples/python/qual/qual_example1.py" 67: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python 67: Environment variables: 67: PYTHONPATH=/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python:/builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/python: 67: Test timeout computed to be: 3000 67/68 Test #67: test_python_qual_qual_example1 ................ Passed 0.11 sec test 68 Start 68: test_r_binding 68: Test command: /usr/bin/R "--slave" "-e" ".libPaths('temp');library(libSBML);cat(getLibSBMLDottedVersion() == '5.19.0')" 68: Working Directory: /builddir/build/BUILD/libSBML-5.19.0-Source/build/src/bindings/r 68: Test timeout computed to be: 3000 68: 68: Attaching package: ‘libSBML’ 68: 68: The following object is masked from ‘package:base’: 68: 68: flush 68: 68: TRUE 68/68 Test #68: test_r_binding ................................ Passed 3.89 sec The following tests passed: test_comp_extensions_run test_comp_sbase_run test_comp_util_run test_comp_validator_run test_sbml_package_fbc_run test_fbc_validator_run test_extension_package_groups_run test_groups_validator_run test_l3v2extendedmath_validator_run test_extension_package_l3v2extendedmath_run test_sbml_package_layout_run test_layout_validator_run test_sbml_package_multi_run test_multi_validator_run test_extension_package_qual_run test_sbml_package_qual_run test_qual_validator_run test_sbml_package_render_run test_render_validator_run test_sbml_annotation_run test_sbml_conversion_run test_sbml_extension_run test_sbml_math_run test_sbml_sbml_run test_sbml_units_run test_sbml_util_run test_sbml_validator_run test_sbml_xml_run test_python_binding test_python_printversion test_python_addCVTerms test_python_addingEvidenceCodes_1 test_python_addingEvidenceCodes_2 test_python_addModelHistory test_python_append_to_note test_python_appendAnnotation test_python_convertSBML test_python_createExampleSBML test_python_createSimpleModel test_python_echoSBML test_python_evaluateCustomMath test_python_getAllElementsWithNotes test_python_inlineInitialAssignments test_python_printAnnotation test_python_printMath test_python_printRegisteredPackages test_python_printSBML test_python_printsupported test_python_printUnits test_python_promoteParameters test_python_readSBML test_python_replaceOneFD test_python_setIdFromNames test_python_unsetAnnotation test_python_unsetNotes test_python_validateSBML test_python_stringInput test_python_stripPackage test_python_fbc_fbc_example1 test_python_groups_groups_example1 test_python_layout_example1_L3 test_python_layout_example1 test_python_multi_multi_example1 test_python_multi_multi_example2 test_python_multi_multi_example3 test_python_multi_printMulti test_python_qual_qual_example1 test_r_binding 100% tests passed, 0 tests failed out of 68 Total Test time (real) = 31.17 sec + popd ~/build/BUILD/libSBML-5.19.0-Source + RPM_EC=0 ++ jobs -p + exit 0 Processing files: libsbml-5.19.0-28.fc40.aarch64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.aJLUJA + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.19.0-Source + DOCDIR=/builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/doc/libsbml + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/doc/libsbml + cp -pr /builddir/build/BUILD/libSBML-5.19.0-Source/README-extension.txt /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/doc/libsbml + cp -pr /builddir/build/BUILD/libSBML-5.19.0-Source/README.md /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/doc/libsbml + cp -pr /builddir/build/BUILD/libSBML-5.19.0-Source/NEWS.txt /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/doc/libsbml + cp -pr /builddir/build/BUILD/libSBML-5.19.0-Source/FUNDING.txt /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/doc/libsbml + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.PWF7pl + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.19.0-Source + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/licenses/libsbml + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/licenses/libsbml + cp -pr /builddir/build/BUILD/libSBML-5.19.0-Source/COPYING.txt /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/licenses/libsbml + cp -pr /builddir/build/BUILD/libSBML-5.19.0-Source/LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/licenses/libsbml + RPM_EC=0 ++ jobs -p + exit 0 Provides: libsbml = 5.19.0-28.fc40 libsbml(aarch-64) = 5.19.0-28.fc40 libsbml.so.5()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libminizip.so.3()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Obsoletes: java-libsbml < 0:5.19.0-18 libsbml-doc < 0:5.18.0-21 libsbml-sharp < 0:5.18.0-20 python2-libsbml < 0:5.18 Processing files: libsbml-devel-5.19.0-28.fc40.aarch64 Provides: libsbml-devel = 5.19.0-28.fc40 libsbml-devel(aarch-64) = 5.19.0-28.fc40 libsbml-static = 5.19.0-28.fc40 pkgconfig(libsbml) = 5.19.0 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config libsbml.so.5()(64bit) pkgconfig(libxml-2.0) >= 2.6.22 Processing files: python3-libsbml-5.19.0-28.fc40.aarch64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.kmUZJW + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.19.0-Source + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/licenses/libsbml + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/licenses/libsbml + cp -pr /builddir/build/BUILD/libSBML-5.19.0-Source/COPYING.txt /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/licenses/libsbml + cp -pr /builddir/build/BUILD/libSBML-5.19.0-Source/LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/licenses/libsbml + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-libsbml = 5.19.0-28.fc40 python3-libsbml = 5.19.0-28.fc40 python3-libsbml(aarch-64) = 5.19.0-28.fc40 python3.12-libsbml = 5.19.0-28.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libminizip.so.3()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) python(abi) = 3.12 rtld(GNU_HASH) Obsoletes: python-libsbml < 5.19.0-28.fc40 Processing files: perl-LibSBML-5.19.0-28.fc40.aarch64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.ah7QPV + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.19.0-Source + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/licenses/libsbml + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/licenses/libsbml + cp -pr /builddir/build/BUILD/libSBML-5.19.0-Source/COPYING.txt /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/licenses/libsbml + cp -pr /builddir/build/BUILD/libSBML-5.19.0-Source/LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/licenses/libsbml + RPM_EC=0 ++ jobs -p + exit 0 Provides: perl(LibSBML) perl(LibSBML::ASTBasePlugin) perl(LibSBML::ASTNode) perl(LibSBML::ASTNodeList) perl(LibSBML::ASTNodeValues_t) perl(LibSBML::AlgebraicRule) perl(LibSBML::AssignmentRule) perl(LibSBML::Association) perl(LibSBML::BindingSiteSpeciesType) perl(LibSBML::BoundingBox) perl(LibSBML::CVTerm) perl(LibSBML::CVTermList) perl(LibSBML::Callback) perl(LibSBML::CallbackRegistry) perl(LibSBML::CobraToFbcConverter) perl(LibSBML::ColorDefinition) perl(LibSBML::CompBase) perl(LibSBML::CompExtension) perl(LibSBML::CompFlatteningConverter) perl(LibSBML::CompModelPlugin) perl(LibSBML::CompPkgNamespaces) perl(LibSBML::CompSBMLDocumentPlugin) perl(LibSBML::CompSBasePlugin) perl(LibSBML::Compartment) perl(LibSBML::CompartmentGlyph) perl(LibSBML::CompartmentReference) perl(LibSBML::CompartmentType) perl(LibSBML::Constraint) perl(LibSBML::ConversionOption) perl(LibSBML::ConversionProperties) perl(LibSBML::CubicBezier) perl(LibSBML::Curve) perl(LibSBML::Date) perl(LibSBML::DateList) perl(LibSBML::DefaultTerm) perl(LibSBML::DefaultValues) perl(LibSBML::DefinitionURLRegistry) perl(LibSBML::Delay) perl(LibSBML::Deletion) perl(LibSBML::Dimensions) perl(LibSBML::ElementFilter) perl(LibSBML::Ellipse) perl(LibSBML::Event) perl(LibSBML::EventAssignment) perl(LibSBML::ExternalModelDefinition) perl(LibSBML::FbcAnd) perl(LibSBML::FbcAssociation) perl(LibSBML::FbcExtension) perl(LibSBML::FbcModelPlugin) perl(LibSBML::FbcOr) perl(LibSBML::FbcPkgNamespaces) perl(LibSBML::FbcReactionPlugin) perl(LibSBML::FbcSBMLDocumentPlugin) perl(LibSBML::FbcSpeciesPlugin) perl(LibSBML::FbcToCobraConverter) perl(LibSBML::FbcV1ToV2Converter) perl(LibSBML::FbcV2ToV1Converter) perl(LibSBML::FluxBound) perl(LibSBML::FluxObjective) perl(LibSBML::FunctionDefinition) perl(LibSBML::FunctionTerm) perl(LibSBML::GeneAssociation) perl(LibSBML::GeneProduct) perl(LibSBML::GeneProductAssociation) perl(LibSBML::GeneProductRef) perl(LibSBML::GeneralGlyph) perl(LibSBML::GlobalRenderInformation) perl(LibSBML::GlobalStyle) perl(LibSBML::GradientBase) perl(LibSBML::GradientStop) perl(LibSBML::GraphicalObject) perl(LibSBML::GraphicalPrimitive1D) perl(LibSBML::GraphicalPrimitive2D) perl(LibSBML::Group) perl(LibSBML::GroupsExtension) perl(LibSBML::GroupsModelPlugin) perl(LibSBML::GroupsPkgNamespaces) perl(LibSBML::ISBMLExtensionNamespaces) perl(LibSBML::IdList) perl(LibSBML::IdentifierTransformer) perl(LibSBML::Image) perl(LibSBML::InSpeciesTypeBond) perl(LibSBML::InitialAssignment) perl(LibSBML::Input) perl(LibSBML::IntraSpeciesReaction) perl(LibSBML::KineticLaw) perl(LibSBML::L3ParserSettings) perl(LibSBML::L3v2extendedmathASTPlugin) perl(LibSBML::L3v2extendedmathExtension) perl(LibSBML::L3v2extendedmathPkgNamespaces) perl(LibSBML::L3v2extendedmathSBMLDocumentPlugin) perl(LibSBML::Layout) perl(LibSBML::LayoutExtension) perl(LibSBML::LayoutModelPlugin) perl(LibSBML::LayoutPkgNamespaces) perl(LibSBML::LayoutSpeciesReferencePlugin) perl(LibSBML::LineEnding) perl(LibSBML::LineSegment) perl(LibSBML::LinearGradient) perl(LibSBML::ListOf) perl(LibSBML::ListOfColorDefinitions) perl(LibSBML::ListOfCompartmentGlyphs) perl(LibSBML::ListOfCompartmentReferences) perl(LibSBML::ListOfCompartmentTypes) perl(LibSBML::ListOfCompartments) perl(LibSBML::ListOfConstraints) perl(LibSBML::ListOfCurveElements) perl(LibSBML::ListOfDeletions) perl(LibSBML::ListOfDrawables) perl(LibSBML::ListOfEventAssignments) perl(LibSBML::ListOfEvents) perl(LibSBML::ListOfExternalModelDefinitions) perl(LibSBML::ListOfFbcAssociations) perl(LibSBML::ListOfFluxBounds) perl(LibSBML::ListOfFluxObjectives) perl(LibSBML::ListOfFunctionDefinitions) perl(LibSBML::ListOfFunctionTerms) perl(LibSBML::ListOfGeneAssociations) perl(LibSBML::ListOfGeneProducts) perl(LibSBML::ListOfGlobalRenderInformation) perl(LibSBML::ListOfGlobalStyles) perl(LibSBML::ListOfGradientDefinitions) perl(LibSBML::ListOfGradientStops) perl(LibSBML::ListOfGraphicalObjects) perl(LibSBML::ListOfGroups) perl(LibSBML::ListOfInSpeciesTypeBonds) perl(LibSBML::ListOfInitialAssignments) perl(LibSBML::ListOfInputs) perl(LibSBML::ListOfLayouts) perl(LibSBML::ListOfLineEndings) perl(LibSBML::ListOfLineSegments) perl(LibSBML::ListOfLocalParameters) perl(LibSBML::ListOfLocalRenderInformation) perl(LibSBML::ListOfLocalStyles) perl(LibSBML::ListOfMembers) perl(LibSBML::ListOfModelDefinitions) perl(LibSBML::ListOfMultiSpeciesTypes) perl(LibSBML::ListOfObjectives) perl(LibSBML::ListOfOutputs) perl(LibSBML::ListOfOutwardBindingSites) perl(LibSBML::ListOfParameters) perl(LibSBML::ListOfPorts) perl(LibSBML::ListOfPossibleSpeciesFeatureValues) perl(LibSBML::ListOfQualitativeSpecies) perl(LibSBML::ListOfReactionGlyphs) perl(LibSBML::ListOfReactions) perl(LibSBML::ListOfReferenceGlyphs) perl(LibSBML::ListOfReplacedElements) perl(LibSBML::ListOfRules) perl(LibSBML::ListOfSpecies) perl(LibSBML::ListOfSpeciesFeatureTypes) perl(LibSBML::ListOfSpeciesFeatureValues) perl(LibSBML::ListOfSpeciesFeatures) perl(LibSBML::ListOfSpeciesGlyphs) perl(LibSBML::ListOfSpeciesReferenceGlyphs) perl(LibSBML::ListOfSpeciesReferences) perl(LibSBML::ListOfSpeciesTypeComponentIndexes) perl(LibSBML::ListOfSpeciesTypeComponentMapInProducts) perl(LibSBML::ListOfSpeciesTypeInstances) perl(LibSBML::ListOfSpeciesTypes) perl(LibSBML::ListOfSubmodels) perl(LibSBML::ListOfTextGlyphs) perl(LibSBML::ListOfTransitions) perl(LibSBML::ListOfUnitDefinitions) perl(LibSBML::ListOfUnits) perl(LibSBML::LocalParameter) perl(LibSBML::LocalRenderInformation) perl(LibSBML::LocalStyle) perl(LibSBML::MathFilter) perl(LibSBML::Member) perl(LibSBML::Model) perl(LibSBML::ModelCreator) perl(LibSBML::ModelCreatorList) perl(LibSBML::ModelDefinition) perl(LibSBML::ModelHistory) perl(LibSBML::ModifierSpeciesReference) perl(LibSBML::MultiASTPlugin) perl(LibSBML::MultiCompartmentPlugin) perl(LibSBML::MultiExtension) perl(LibSBML::MultiListOfReactionsPlugin) perl(LibSBML::MultiModelPlugin) perl(LibSBML::MultiPkgNamespaces) perl(LibSBML::MultiSBMLDocumentPlugin) perl(LibSBML::MultiSimpleSpeciesReferencePlugin) perl(LibSBML::MultiSpeciesPlugin) perl(LibSBML::MultiSpeciesReferencePlugin) perl(LibSBML::MultiSpeciesType) perl(LibSBML::OFStream) perl(LibSBML::OStream) perl(LibSBML::OStringStream) perl(LibSBML::Objective) perl(LibSBML::Output) perl(LibSBML::OutwardBindingSite) perl(LibSBML::Parameter) perl(LibSBML::Point) perl(LibSBML::Polygon) perl(LibSBML::Port) perl(LibSBML::PossibleSpeciesFeatureValue) perl(LibSBML::Priority) perl(LibSBML::QualExtension) perl(LibSBML::QualModelPlugin) perl(LibSBML::QualPkgNamespaces) perl(LibSBML::QualitativeSpecies) perl(LibSBML::RDFAnnotationParser) perl(LibSBML::RadialGradient) perl(LibSBML::RateRule) perl(LibSBML::Reaction) perl(LibSBML::ReactionGlyph) perl(LibSBML::Rectangle) perl(LibSBML::ReferenceGlyph) perl(LibSBML::RelAbsVector) perl(LibSBML::RenderCubicBezier) perl(LibSBML::RenderCurve) perl(LibSBML::RenderExtension) perl(LibSBML::RenderGraphicalObjectPlugin) perl(LibSBML::RenderGroup) perl(LibSBML::RenderInformationBase) perl(LibSBML::RenderLayoutPlugin) perl(LibSBML::RenderListOfLayoutsPlugin) perl(LibSBML::RenderPkgNamespaces) perl(LibSBML::RenderPoint) perl(LibSBML::ReplacedBy) perl(LibSBML::ReplacedElement) perl(LibSBML::Replacing) perl(LibSBML::Rule) perl(LibSBML::SBMLConstructorException) perl(LibSBML::SBMLConverter) perl(LibSBML::SBMLConverterRegistry) perl(LibSBML::SBMLDocument) perl(LibSBML::SBMLDocumentPlugin) perl(LibSBML::SBMLError) perl(LibSBML::SBMLErrorLog) perl(LibSBML::SBMLExtension) perl(LibSBML::SBMLExtensionException) perl(LibSBML::SBMLExtensionRegistry) perl(LibSBML::SBMLExternalValidator) perl(LibSBML::SBMLFileResolver) perl(LibSBML::SBMLFunctionDefinitionConverter) perl(LibSBML::SBMLIdConverter) perl(LibSBML::SBMLInferUnitsConverter) perl(LibSBML::SBMLInitialAssignmentConverter) perl(LibSBML::SBMLLevel1Version1Converter) perl(LibSBML::SBMLLevelVersionConverter) perl(LibSBML::SBMLLocalParameterConverter) perl(LibSBML::SBMLNamespaces) perl(LibSBML::SBMLNamespacesList) perl(LibSBML::SBMLReactionConverter) perl(LibSBML::SBMLReader) perl(LibSBML::SBMLResolver) perl(LibSBML::SBMLResolverRegistry) perl(LibSBML::SBMLRuleConverter) perl(LibSBML::SBMLStripPackageConverter) perl(LibSBML::SBMLTransforms) perl(LibSBML::SBMLUnitsConverter) perl(LibSBML::SBMLUri) perl(LibSBML::SBMLValidator) perl(LibSBML::SBMLWriter) perl(LibSBML::SBO) perl(LibSBML::SBase) perl(LibSBML::SBaseExtensionPoint) perl(LibSBML::SBaseList) perl(LibSBML::SBasePlugin) perl(LibSBML::SBaseRef) perl(LibSBML::SimpleSpeciesReference) perl(LibSBML::Species) perl(LibSBML::SpeciesFeature) perl(LibSBML::SpeciesFeatureType) perl(LibSBML::SpeciesFeatureValue) perl(LibSBML::SpeciesGlyph) perl(LibSBML::SpeciesReference) perl(LibSBML::SpeciesReferenceGlyph) perl(LibSBML::SpeciesType) perl(LibSBML::SpeciesTypeComponentIndex) perl(LibSBML::SpeciesTypeComponentMapInProduct) perl(LibSBML::SpeciesTypeInstance) perl(LibSBML::StoichiometryMath) perl(LibSBML::StringSet) perl(LibSBML::Style) perl(LibSBML::SubListOfSpeciesFeatures) perl(LibSBML::Submodel) perl(LibSBML::SyntaxChecker) perl(LibSBML::Text) perl(LibSBML::TextGlyph) perl(LibSBML::Transformation) perl(LibSBML::Transformation2D) perl(LibSBML::Transition) perl(LibSBML::Trigger) perl(LibSBML::Unit) perl(LibSBML::UnitDefinition) perl(LibSBML::XMLAttributes) perl(LibSBML::XMLConstructorException) perl(LibSBML::XMLError) perl(LibSBML::XMLErrorLog) perl(LibSBML::XMLInputStream) perl(LibSBML::XMLNamespaces) perl(LibSBML::XMLNode) perl(LibSBML::XMLOutputStream) perl(LibSBML::XMLOwningOutputFileStream) perl(LibSBML::XMLOwningOutputStringStream) perl(LibSBML::XMLToken) perl(LibSBML::XMLTriple) perl(LibSBML::double_array) perl(LibSBML::int_array) perl(LibSBMLc) perl-LibSBML = 5.19.0-28.fc40 perl-LibSBML(aarch-64) = 5.19.0-28.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libminizip.so.3()(64bit) libperl.so.5.38()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) perl(:MODULE_COMPAT_5.38.0) perl(DynaLoader) perl(Exporter) perl(base) perl(overload) perl(vars) perl-libs rtld(GNU_HASH) Processing files: ruby-SBML-5.19.0-28.fc40.aarch64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.W2vTXT + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.19.0-Source + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/licenses/libsbml + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/licenses/libsbml + cp -pr /builddir/build/BUILD/libSBML-5.19.0-Source/COPYING.txt /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/licenses/libsbml + cp -pr /builddir/build/BUILD/libSBML-5.19.0-Source/LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/licenses/libsbml + RPM_EC=0 ++ jobs -p + exit 0 Provides: libSBML.so()(64bit) ruby(SBML) = 5.19.0 ruby-SBML = 5.19.0-28.fc40 ruby-SBML(aarch-64) = 5.19.0-28.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libminizip.so.3()(64bit) libruby.so.3.2()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.2)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: R-libSBML-5.19.0-28.fc40.aarch64 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.nsxGoI + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.19.0-Source + LICENSEDIR=/builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/licenses/libsbml + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/licenses/libsbml + cp -pr /builddir/build/BUILD/libSBML-5.19.0-Source/COPYING.txt /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/licenses/libsbml + cp -pr /builddir/build/BUILD/libSBML-5.19.0-Source/LICENSE.txt /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64/usr/share/licenses/libsbml + RPM_EC=0 ++ jobs -p + exit 0 Provides: R(libSBML) = 5.19.0 R-libSBML = 5.19.0-28.fc40 R-libSBML(aarch-64) = 5.19.0-28.fc40 libSBML.so()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: R(ABI) = 4.3 R(methods) R-core >= 1.8.0 ld-linux-aarch64.so.1()(64bit) ld-linux-aarch64.so.1(GLIBC_2.17)(64bit) libR.so()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.38)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libminizip.so.3()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.1)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: libsbml-debugsource-5.19.0-28.fc40.aarch64 Provides: libsbml-debugsource = 5.19.0-28.fc40 libsbml-debugsource(aarch-64) = 5.19.0-28.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: libsbml-debuginfo-5.19.0-28.fc40.aarch64 Provides: debuginfo(build-id) = f06977433fd4c38f9bfaed25bfe4ab3b7f80ef9a libsbml-debuginfo = 5.19.0-28.fc40 libsbml-debuginfo(aarch-64) = 5.19.0-28.fc40 libsbml.so.5.19.0-5.19.0-28.fc40.aarch64.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsbml-debugsource(aarch-64) = 5.19.0-28.fc40 Processing files: python3-libsbml-debuginfo-5.19.0-28.fc40.aarch64 Provides: debuginfo(build-id) = d786355b5b02f92863855cb2f7dde25ba78ba9a7 python-libsbml-debuginfo = 5.19.0-28.fc40 python3-libsbml-debuginfo = 5.19.0-28.fc40 python3-libsbml-debuginfo(aarch-64) = 5.19.0-28.fc40 python3.12-libsbml-debuginfo = 5.19.0-28.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsbml-debugsource(aarch-64) = 5.19.0-28.fc40 Processing files: perl-LibSBML-debuginfo-5.19.0-28.fc40.aarch64 Provides: debuginfo(build-id) = cd49bec3d64710bd4a02e09e9ddfe49f51b76f79 perl-LibSBML-debuginfo = 5.19.0-28.fc40 perl-LibSBML-debuginfo(aarch-64) = 5.19.0-28.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsbml-debugsource(aarch-64) = 5.19.0-28.fc40 Processing files: ruby-SBML-debuginfo-5.19.0-28.fc40.aarch64 Provides: debuginfo(build-id) = 5b8cbdefb160eb618b91a11d221ada4b15259069 libSBML.so-5.19.0-28.fc40.aarch64.debug()(64bit) ruby-SBML-debuginfo = 5.19.0-28.fc40 ruby-SBML-debuginfo(aarch-64) = 5.19.0-28.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsbml-debugsource(aarch-64) = 5.19.0-28.fc40 Processing files: R-libSBML-debuginfo-5.19.0-28.fc40.aarch64 Provides: R-libSBML-debuginfo = 5.19.0-28.fc40 R-libSBML-debuginfo(aarch-64) = 5.19.0-28.fc40 debuginfo(build-id) = 4c71b64892bd2c2eaf6bacf1f11f38244fc5572e libSBML.so-5.19.0-28.fc40.aarch64.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: libsbml-debugsource(aarch-64) = 5.19.0-28.fc40 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64 Wrote: /builddir/build/RPMS/R-libSBML-debuginfo-5.19.0-28.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/python3-libsbml-debuginfo-5.19.0-28.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/ruby-SBML-debuginfo-5.19.0-28.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/perl-LibSBML-debuginfo-5.19.0-28.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/libsbml-devel-5.19.0-28.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/libsbml-debugsource-5.19.0-28.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/python3-libsbml-5.19.0-28.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/libsbml-debuginfo-5.19.0-28.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/R-libSBML-5.19.0-28.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/ruby-SBML-5.19.0-28.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/libsbml-5.19.0-28.fc40.aarch64.rpm Wrote: /builddir/build/RPMS/perl-LibSBML-5.19.0-28.fc40.aarch64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.aZZuXB + umask 022 + cd /builddir/build/BUILD + cd libSBML-5.19.0-Source + /usr/bin/rm -rf /builddir/build/BUILDROOT/libsbml-5.19.0-28.fc40.aarch64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.ox0c9M + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/libSBML-5.19.0-Source-SPECPARTS + rm -rf libSBML-5.19.0-Source libSBML-5.19.0-Source.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild libsbml-5.19.0-28.fc40.src.rpm Finish: build phase for libsbml-5.19.0-28.fc40.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-aarch64-1695203019.034062/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-aarch64-1695203019.034062/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-aarch64-1695203019.034062/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/libsbml-5.19.0-28.fc40.src.rpm) Config(child) 50 minutes 8 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "python3-libsbml", "epoch": null, "version": "5.19.0", "release": "28.fc40", "arch": "aarch64" }, { "name": "ruby-SBML-debuginfo", "epoch": null, "version": "5.19.0", "release": "28.fc40", "arch": "aarch64" }, { "name": "perl-LibSBML", "epoch": null, "version": "5.19.0", "release": "28.fc40", "arch": "aarch64" }, { "name": "libsbml-devel", "epoch": null, "version": "5.19.0", "release": "28.fc40", "arch": "aarch64" }, { "name": "libsbml", "epoch": null, "version": "5.19.0", "release": "28.fc40", "arch": "src" }, { "name": "libsbml-debugsource", "epoch": null, "version": "5.19.0", "release": "28.fc40", "arch": "aarch64" }, { "name": "perl-LibSBML-debuginfo", "epoch": null, "version": "5.19.0", "release": "28.fc40", "arch": "aarch64" }, { "name": "libsbml", "epoch": null, "version": "5.19.0", "release": "28.fc40", "arch": "aarch64" }, { "name": "libsbml-debuginfo", "epoch": null, "version": "5.19.0", "release": "28.fc40", "arch": "aarch64" }, { "name": "python3-libsbml-debuginfo", "epoch": null, "version": "5.19.0", "release": "28.fc40", "arch": "aarch64" }, { "name": "R-libSBML", "epoch": null, "version": "5.19.0", "release": "28.fc40", "arch": "aarch64" }, { "name": "R-libSBML-debuginfo", "epoch": null, "version": "5.19.0", "release": "28.fc40", "arch": "aarch64" }, { "name": "ruby-SBML", "epoch": null, "version": "5.19.0", "release": "28.fc40", "arch": "aarch64" } ] } RPMResults finished