Warning: Permanently added '140.211.168.156' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6408207-fedora-rawhide-ppc64le --chroot fedora-rawhide-ppc64le


Version: 0.69
PID: 5919
Logging PID: 5920
Task:
{'appstream': False,
 'background': True,
 'build_id': 6408207,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-ppc64le',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '2586c48e65d92db308ab7ffa92c1d46524e9837f',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/mmseq',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'mmseq',
 'package_version': '1.0.11-16',
 'project_dirname': 'zlib-ng-compat-mpb',
 'project_name': 'zlib-ng-compat-mpb',
 'project_owner': 'tuliom',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/tuliom/zlib-ng-compat-mpb/fedora-rawhide-ppc64le/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None}],
 'sandbox': 'tuliom/zlib-ng-compat-mpb--tuliom',
 'source_json': {},
 'source_type': None,
 'submitter': 'tuliom',
 'tags': [],
 'task_id': '6408207-fedora-rawhide-ppc64le',
 'timeout': 115200,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/mmseq /var/lib/copr-rpmbuild/workspace/workdir-2suzkddz/mmseq --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/mmseq', '/var/lib/copr-rpmbuild/workspace/workdir-2suzkddz/mmseq', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-2suzkddz/mmseq'...

Running: git checkout 2586c48e65d92db308ab7ffa92c1d46524e9837f --

cmd: ['git', 'checkout', '2586c48e65d92db308ab7ffa92c1d46524e9837f', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-2suzkddz/mmseq
rc: 0
stdout: 
stderr: Note: switching to '2586c48e65d92db308ab7ffa92c1d46524e9837f'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 2586c48 automatic import of mmseq

Running: copr-distgit-client sources

/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-2suzkddz/mmseq
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading 1.0.11.zip
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o 1.0.11.zip --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/tuliom/zlib-ng-compat-mpb/mmseq/1.0.11.zip/md5/c727916d339d7a2111523800b621ce2b/1.0.11.zip
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 2781k  100 2781k    0     0  3643k      0 --:--:-- --:--:-- --:--:-- 3640k
INFO: Reading stdout from command: md5sum 1.0.11.zip

Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-2suzkddz/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-2suzkddz/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1695067711.503818 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.1.1 starting (python version = 3.11.3, NVR = mock-5.1.1-1.fc38)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-2suzkddz/mmseq/mmseq.spec)  Config(fedora-rawhide-ppc64le)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.1.1
INFO: Mock Version: 5.1.1
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1695067711.503818/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1695067711.503818/root
INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount
INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/beb0de4744e4962ffb82970f219a3113083def0169e600824024dd4ef0391d1c/merged
INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/beb0de4744e4962ffb82970f219a3113083def0169e600824024dd4ef0391d1c/merged) with podman image umount
INFO: Package manager dnf detected and used (fallback)
INFO: Bootstrap image not marked ready
Start(bootstrap): installing dnf tooling
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  19 MB/s | 5.1 MB     00:00    
fedora                                           11 MB/s |  67 MB     00:06    
Last metadata expiration check: 0:00:02 ago on Mon Sep 18 20:09:54 2023.
Package python3-dnf-4.16.2-4.fc40.noarch is already installed.
Dependencies resolved.
================================================================================
 Package                      Arch        Version              Repository  Size
================================================================================
Installing:
 python3-dnf-plugins-core     noarch      4.4.2-1.fc39         fedora     293 k
Installing dependencies:
 dbus-libs                    ppc64le     1:1.14.10-1.fc40     fedora     177 k
 python3-dateutil             noarch      1:2.8.2-10.fc39      fedora     355 k
 python3-dbus                 ppc64le     1.3.2-4.fc39         fedora     161 k
 python3-distro               noarch      1.8.0-6.fc39         fedora      49 k
 python3-six                  noarch      1.16.0-12.fc39       fedora      41 k
 python3-systemd              ppc64le     235-5.fc39           fedora     108 k

Transaction Summary
================================================================================
Install  7 Packages

Total download size: 1.2 M
Installed size: 4.8 M
Downloading Packages:
(1/7): python3-dbus-1.3.2-4.fc39.ppc64le.rpm    398 kB/s | 161 kB     00:00    
(2/7): dbus-libs-1.14.10-1.fc40.ppc64le.rpm     423 kB/s | 177 kB     00:00    
(3/7): python3-dateutil-2.8.2-10.fc39.noarch.rp 770 kB/s | 355 kB     00:00    
(4/7): python3-distro-1.8.0-6.fc39.noarch.rpm   325 kB/s |  49 kB     00:00    
(5/7): python3-six-1.16.0-12.fc39.noarch.rpm    422 kB/s |  41 kB     00:00    
(6/7): python3-dnf-plugins-core-4.4.2-1.fc39.no 1.3 MB/s | 293 kB     00:00    
(7/7): python3-systemd-235-5.fc39.ppc64le.rpm   916 kB/s | 108 kB     00:00    
--------------------------------------------------------------------------------
Total                                           1.1 MB/s | 1.2 MB     00:01     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : python3-systemd-235-5.fc39.ppc64le                     1/7 
  Installing       : python3-six-1.16.0-12.fc39.noarch                      2/7 
  Installing       : python3-dateutil-1:2.8.2-10.fc39.noarch                3/7 
  Installing       : python3-distro-1.8.0-6.fc39.noarch                     4/7 
  Installing       : dbus-libs-1:1.14.10-1.fc40.ppc64le                     5/7 
  Installing       : python3-dbus-1.3.2-4.fc39.ppc64le                      6/7 
  Installing       : python3-dnf-plugins-core-4.4.2-1.fc39.noarch           7/7 
  Running scriptlet: python3-dnf-plugins-core-4.4.2-1.fc39.noarch           7/7 
  Verifying        : dbus-libs-1:1.14.10-1.fc40.ppc64le                     1/7 
  Verifying        : python3-dateutil-1:2.8.2-10.fc39.noarch                2/7 
  Verifying        : python3-dbus-1.3.2-4.fc39.ppc64le                      3/7 
  Verifying        : python3-distro-1.8.0-6.fc39.noarch                     4/7 
  Verifying        : python3-dnf-plugins-core-4.4.2-1.fc39.noarch           5/7 
  Verifying        : python3-six-1.16.0-12.fc39.noarch                      6/7 
  Verifying        : python3-systemd-235-5.fc39.ppc64le                     7/7 

Installed:
  dbus-libs-1:1.14.10-1.fc40.ppc64le                                            
  python3-dateutil-1:2.8.2-10.fc39.noarch                                       
  python3-dbus-1.3.2-4.fc39.ppc64le                                             
  python3-distro-1.8.0-6.fc39.noarch                                            
  python3-dnf-plugins-core-4.4.2-1.fc39.noarch                                  
  python3-six-1.16.0-12.fc39.noarch                                             
  python3-systemd-235-5.fc39.ppc64le                                            

Complete!
Finish(bootstrap): installing dnf tooling
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-1695067711.503818/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf detected and used (direct choice)
Start: installing minimal buildroot with dnf
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                 3.2 MB/s | 5.1 MB     00:01    
fedora                                           11 MB/s |  67 MB     00:06    
Last metadata expiration check: 0:00:04 ago on Mon Sep 18 20:11:18 2023.
Dependencies resolved.
================================================================================
 Package                     Arch    Version                    Repo       Size
================================================================================
Installing group/module packages:
 bash                        ppc64le 5.2.15-5.fc39              fedora    1.9 M
 bzip2                       ppc64le 1.0.8-16.fc39              fedora     53 k
 coreutils                   ppc64le 9.4-1.fc40                 fedora    1.4 M
 cpio                        ppc64le 2.14-4.fc39                fedora    286 k
 diffutils                   ppc64le 3.10-3.fc39                fedora    408 k
 fedora-release-common       noarch  40-0.7                     fedora     18 k
 findutils                   ppc64le 1:4.9.0-6.fc40             fedora    540 k
 gawk                        ppc64le 5.2.2-2.fc39               fedora    1.1 M
 glibc-minimal-langpack      ppc64le 2.38.9000-8.fc40           copr_base  73 k
 grep                        ppc64le 3.11-5.fc40                fedora    308 k
 gzip                        ppc64le 1.12-6.fc39                fedora    170 k
 info                        ppc64le 7.0.3-3.fc39               fedora    200 k
 patch                       ppc64le 2.7.6-22.fc39              fedora    137 k
 redhat-rpm-config           noarch  270-1.fc40                 copr_base  74 k
 rpm-build                   ppc64le 4.18.99-1.fc40             fedora     80 k
 sed                         ppc64le 4.8-14.fc39                fedora    312 k
 shadow-utils                ppc64le 2:4.14.0-1.fc40            fedora    1.3 M
 tar                         ppc64le 2:1.35-2.fc40              fedora    884 k
 unzip                       ppc64le 6.0-62.fc39                fedora    190 k
 util-linux                  ppc64le 2.39.2-1.fc40              copr_base 1.2 M
 which                       ppc64le 2.21-40.fc39               fedora     43 k
 xz                          ppc64le 5.4.4-1.fc39               fedora    559 k
Installing dependencies:
 alternatives                ppc64le 1.25-1.fc39                fedora     41 k
 ansible-srpm-macros         noarch  1-11.fc39                  fedora     21 k
 audit-libs                  ppc64le 3.1.2-4.fc40               fedora    132 k
 authselect                  ppc64le 1.4.2-3.fc39               fedora    145 k
 authselect-libs             ppc64le 1.4.2-3.fc39               fedora    253 k
 basesystem                  noarch  11-18.fc39                 fedora    7.2 k
 binutils                    ppc64le 2.41-5.fc40                fedora    6.4 M
 binutils-gold               ppc64le 2.41-5.fc40                fedora    1.1 M
 bzip2-libs                  ppc64le 1.0.8-16.fc39              fedora     47 k
 ca-certificates             noarch  2023.2.60_v7.0.306-3.fc40  fedora    837 k
 coreutils-common            ppc64le 9.4-1.fc40                 fedora    2.1 M
 cracklib                    ppc64le 2.9.11-2.fc40              copr_base  86 k
 crypto-policies             noarch  20230731-1.git5ed06e0.fc39 fedora     99 k
 curl                        ppc64le 8.3.0-1.fc40               copr_base 357 k
 cyrus-sasl-lib              ppc64le 2.1.28-11.fc40             copr_base 878 k
 debugedit                   ppc64le 5.0-10.fc39                fedora     80 k
 dwz                         ppc64le 0.15-3.fc39                fedora    147 k
 ed                          ppc64le 1.19-4.fc39                fedora     81 k
 efi-srpm-macros             noarch  5-9.fc39                   fedora     22 k
 elfutils                    ppc64le 0.189-6.fc40               copr_base 563 k
 elfutils-debuginfod-client  ppc64le 0.189-6.fc40               copr_base  40 k
 elfutils-default-yama-scope noarch  0.189-6.fc40               copr_base  14 k
 elfutils-libelf             ppc64le 0.189-6.fc40               copr_base 204 k
 elfutils-libs               ppc64le 0.189-6.fc40               copr_base 294 k
 fedora-gpg-keys             noarch  40-0.1                     fedora    130 k
 fedora-release              noarch  40-0.7                     fedora    8.0 k
 fedora-release-identity-basic
                             noarch  40-0.7                     fedora    8.8 k
 fedora-repos                noarch  40-0.1                     fedora    9.4 k
 fedora-repos-rawhide        noarch  40-0.1                     fedora    9.0 k
 file                        ppc64le 5.45-1.fc40                copr_base  50 k
 file-libs                   ppc64le 5.45-1.fc40                copr_base 775 k
 filesystem                  ppc64le 3.18-6.fc39                fedora    1.1 M
 fonts-srpm-macros           noarch  1:2.0.5-12.fc39            fedora     26 k
 forge-srpm-macros           noarch  0.1.0-1.fc40               fedora     18 k
 fpc-srpm-macros             noarch  1.3-8.fc39                 fedora    7.4 k
 gdb-minimal                 ppc64le 13.2-8.fc40                fedora    4.2 M
 gdbm-libs                   ppc64le 1:1.23-4.fc39              fedora     62 k
 ghc-srpm-macros             noarch  1.6.1-2.fc39               fedora    7.8 k
 glibc                       ppc64le 2.38.9000-8.fc40           copr_base 2.2 M
 glibc-common                ppc64le 2.38.9000-8.fc40           copr_base 364 k
 glibc-gconv-extra           ppc64le 2.38.9000-8.fc40           copr_base 2.0 M
 gmp                         ppc64le 1:6.2.1-5.fc39             fedora    304 k
 gnat-srpm-macros            noarch  6-3.fc39                   fedora    8.8 k
 go-srpm-macros              noarch  3.2.0-7.fc40               fedora     27 k
 jansson                     ppc64le 2.13.1-7.fc39              fedora     49 k
 kernel-srpm-macros          noarch  1.0-20.fc39                fedora     10 k
 keyutils-libs               ppc64le 1.6.1-7.fc39               fedora     32 k
 krb5-libs                   ppc64le 1.21.2-1.fc40              fedora    850 k
 libacl                      ppc64le 2.3.1-9.fc40               fedora     26 k
 libarchive                  ppc64le 3.7.2-1.fc40               copr_base 477 k
 libattr                     ppc64le 2.5.1-9.fc40               fedora     19 k
 libblkid                    ppc64le 2.39.2-1.fc40              copr_base 134 k
 libbrotli                   ppc64le 1.1.0-1.fc40               fedora    380 k
 libcap                      ppc64le 2.48-7.fc39                fedora     73 k
 libcap-ng                   ppc64le 0.8.3-8.fc40               fedora     33 k
 libcom_err                  ppc64le 1.47.0-2.fc39              fedora     27 k
 libcurl                     ppc64le 8.3.0-1.fc40               copr_base 380 k
 libdb                       ppc64le 5.3.28-58.fc40             copr_base 831 k
 libeconf                    ppc64le 0.5.2-1.fc40               fedora     34 k
 libevent                    ppc64le 2.1.12-9.fc39              fedora    275 k
 libfdisk                    ppc64le 2.39.2-1.fc40              copr_base 179 k
 libffi                      ppc64le 3.4.4-4.fc39               fedora     38 k
 libgcc                      ppc64le 13.2.1-1.fc39              fedora    104 k
 libgomp                     ppc64le 13.2.1-1.fc39              fedora    332 k
 libidn2                     ppc64le 2.3.4-3.fc39               fedora    121 k
 libmount                    ppc64le 2.39.2-1.fc40              copr_base 177 k
 libnghttp2                  ppc64le 1.56.0-1.fc40              copr_base  85 k
 libnsl2                     ppc64le 2.0.0-6.fc39               fedora     32 k
 libpkgconf                  ppc64le 1.9.5-2.fc39               fedora     42 k
 libpsl                      ppc64le 0.21.2-4.fc39              fedora     65 k
 libpwquality                ppc64le 1.4.5-6.fc39               fedora    123 k
 librtas                     ppc64le 2.0.4-3.fc39               fedora     70 k
 libselinux                  ppc64le 3.5-5.fc39                 fedora    100 k
 libsemanage                 ppc64le 3.5-4.fc39                 fedora    131 k
 libsepol                    ppc64le 3.5-2.fc39                 fedora    356 k
 libsigsegv                  ppc64le 2.14-5.fc39                fedora     28 k
 libsmartcols                ppc64le 2.39.2-1.fc40              copr_base  74 k
 libssh                      ppc64le 0.10.5-2.fc39              fedora    238 k
 libssh-config               noarch  0.10.5-2.fc39              fedora    9.2 k
 libstdc++                   ppc64le 13.2.1-1.fc39              fedora    994 k
 libtasn1                    ppc64le 4.19.0-3.fc39              fedora     80 k
 libtirpc                    ppc64le 1.3.3-1.rc2.fc39           fedora    108 k
 libunistring                ppc64le 1.1-5.fc40                 fedora    578 k
 libutempter                 ppc64le 1.2.1-10.fc39              fedora     27 k
 libuuid                     ppc64le 2.39.2-1.fc40              copr_base  30 k
 libverto                    ppc64le 0.3.2-6.fc39               fedora     22 k
 libxcrypt                   ppc64le 4.4.36-2.fc39              fedora    132 k
 libxml2                     ppc64le 2.11.5-1.fc40              copr_base 778 k
 libzstd                     ppc64le 1.5.5-4.fc40               copr_base 336 k
 lua-libs                    ppc64le 5.4.6-3.fc39               fedora    149 k
 lua-srpm-macros             noarch  1-9.fc39                   fedora    8.6 k
 lz4-libs                    ppc64le 1.9.4-4.fc39               fedora     85 k
 mpfr                        ppc64le 4.2.0-3.fc39               fedora    353 k
 ncurses-base                noarch  6.4-7.20230520.fc40        fedora     88 k
 ncurses-libs                ppc64le 6.4-7.20230520.fc40        fedora    380 k
 ocaml-srpm-macros           noarch  8-2.fc39                   fedora     14 k
 openblas-srpm-macros        noarch  2-14.fc39                  fedora    7.5 k
 openldap                    ppc64le 2.6.6-1.fc39               fedora    287 k
 openssl-libs                ppc64le 1:3.1.1-4.fc40             copr_base 2.3 M
 p11-kit                     ppc64le 0.25.0-2.fc39              fedora    500 k
 p11-kit-trust               ppc64le 0.25.0-2.fc39              fedora    156 k
 package-notes-srpm-macros   noarch  0.5-9.fc39                 fedora     11 k
 pam                         ppc64le 1.5.3-2.fc39               fedora    592 k
 pam-libs                    ppc64le 1.5.3-2.fc39               fedora     64 k
 pcre2                       ppc64le 10.42-1.fc39.2             fedora    241 k
 pcre2-syntax                noarch  10.42-1.fc39.2             fedora    143 k
 perl-srpm-macros            noarch  1-51.fc39                  fedora    8.0 k
 pkgconf                     ppc64le 1.9.5-2.fc39               fedora     43 k
 pkgconf-m4                  noarch  1.9.5-2.fc39               fedora     14 k
 pkgconf-pkg-config          ppc64le 1.9.5-2.fc39               fedora    9.6 k
 popt                        ppc64le 1.19-3.fc39                fedora     71 k
 publicsuffix-list-dafsa     noarch  20230812-1.fc40            fedora     57 k
 pyproject-srpm-macros       noarch  1.9.0-2.fc39               fedora     14 k
 python-srpm-macros          noarch  3.12-4.fc40                fedora     25 k
 qt5-srpm-macros             noarch  5.15.10-2.fc39             fedora    8.3 k
 qt6-srpm-macros             noarch  6.5.2-2.fc39               fedora    9.2 k
 readline                    ppc64le 8.2-4.fc39                 fedora    229 k
 rpm                         ppc64le 4.18.99-1.fc40             fedora    537 k
 rpm-build-libs              ppc64le 4.18.99-1.fc40             fedora    103 k
 rpm-libs                    ppc64le 4.18.99-1.fc40             fedora    356 k
 rpm-sequoia                 ppc64le 1.5.0-1.fc40               fedora    1.7 M
 rust-srpm-macros            noarch  24-5.fc40                  fedora     12 k
 setup                       noarch  2.14.4-1.fc39              fedora    154 k
 sqlite-libs                 ppc64le 3.43.1-1.fc40              fedora    798 k
 systemd-libs                ppc64le 254.1-2.fc40               fedora    733 k
 tzdata                      noarch  2023c-3.fc40               fedora    718 k
 util-linux-core             ppc64le 2.39.2-1.fc40              copr_base 520 k
 xxhash-libs                 ppc64le 0.8.2-1.fc39               fedora     37 k
 xz-libs                     ppc64le 5.4.4-1.fc39               fedora    121 k
 zip                         ppc64le 3.0-38.fc39                fedora    274 k
 zlib-ng-compat              ppc64le 2.1.3-3.fc40               copr_base  83 k
 zstd                        ppc64le 1.5.5-4.fc40               copr_base 500 k
Installing Groups:
 Buildsystem building group                                                    

Transaction Summary
================================================================================
Install  154 Packages

Total download size: 57 M
Installed size: 327 M
Downloading Packages:
(1/154): cracklib-2.9.11-2.fc40.ppc64le.rpm     1.1 MB/s |  86 kB     00:00    
(2/154): curl-8.3.0-1.fc40.ppc64le.rpm          4.0 MB/s | 357 kB     00:00    
(3/154): elfutils-0.189-6.fc40.ppc64le.rpm       25 MB/s | 563 kB     00:00    
(4/154): cyrus-sasl-lib-2.1.28-11.fc40.ppc64le. 8.3 MB/s | 878 kB     00:00    
(5/154): elfutils-debuginfod-client-0.189-6.fc4 3.2 MB/s |  40 kB     00:00    
(6/154): elfutils-default-yama-scope-0.189-6.fc 1.6 MB/s |  14 kB     00:00    
(7/154): elfutils-libelf-0.189-6.fc40.ppc64le.r  24 MB/s | 204 kB     00:00    
(8/154): elfutils-libs-0.189-6.fc40.ppc64le.rpm  25 MB/s | 294 kB     00:00    
(9/154): file-5.45-1.fc40.ppc64le.rpm           4.4 MB/s |  50 kB     00:00    
(10/154): file-libs-5.45-1.fc40.ppc64le.rpm      26 MB/s | 775 kB     00:00    
(11/154): glibc-common-2.38.9000-8.fc40.ppc64le  12 MB/s | 364 kB     00:00    
(12/154): glibc-2.38.9000-8.fc40.ppc64le.rpm     46 MB/s | 2.2 MB     00:00    
(13/154): glibc-minimal-langpack-2.38.9000-8.fc 2.9 MB/s |  73 kB     00:00    
(14/154): glibc-gconv-extra-2.38.9000-8.fc40.pp  49 MB/s | 2.0 MB     00:00    
(15/154): libarchive-3.7.2-1.fc40.ppc64le.rpm    21 MB/s | 477 kB     00:00    
(16/154): libblkid-2.39.2-1.fc40.ppc64le.rpm    6.0 MB/s | 134 kB     00:00    
(17/154): libcurl-8.3.0-1.fc40.ppc64le.rpm       36 MB/s | 380 kB     00:00    
(18/154): libdb-5.3.28-58.fc40.ppc64le.rpm       50 MB/s | 831 kB     00:00    
(19/154): libfdisk-2.39.2-1.fc40.ppc64le.rpm    9.9 MB/s | 179 kB     00:00    
(20/154): libmount-2.39.2-1.fc40.ppc64le.rpm     11 MB/s | 177 kB     00:00    
(21/154): libnghttp2-1.56.0-1.fc40.ppc64le.rpm   12 MB/s |  85 kB     00:00    
(22/154): libsmartcols-2.39.2-1.fc40.ppc64le.rp 9.7 MB/s |  74 kB     00:00    
(23/154): libuuid-2.39.2-1.fc40.ppc64le.rpm     3.7 MB/s |  30 kB     00:00    
(24/154): libxml2-2.11.5-1.fc40.ppc64le.rpm      32 MB/s | 778 kB     00:00    
(25/154): libzstd-1.5.5-4.fc40.ppc64le.rpm       12 MB/s | 336 kB     00:00    
(26/154): openssl-libs-3.1.1-4.fc40.ppc64le.rpm  54 MB/s | 2.3 MB     00:00    
(27/154): redhat-rpm-config-270-1.fc40.noarch.r 5.8 MB/s |  74 kB     00:00    
(28/154): util-linux-core-2.39.2-1.fc40.ppc64le  31 MB/s | 520 kB     00:00    
(29/154): util-linux-2.39.2-1.fc40.ppc64le.rpm   44 MB/s | 1.2 MB     00:00    
(30/154): zlib-ng-compat-2.1.3-3.fc40.ppc64le.r 6.5 MB/s |  83 kB     00:00    
(31/154): zstd-1.5.5-4.fc40.ppc64le.rpm          31 MB/s | 500 kB     00:00    
(32/154): ansible-srpm-macros-1-11.fc39.noarch.  76 kB/s |  21 kB     00:00    
(33/154): alternatives-1.25-1.fc39.ppc64le.rpm  132 kB/s |  41 kB     00:00    
(34/154): audit-libs-3.1.2-4.fc40.ppc64le.rpm   323 kB/s | 132 kB     00:00    
(35/154): authselect-1.4.2-3.fc39.ppc64le.rpm   561 kB/s | 145 kB     00:00    
(36/154): authselect-libs-1.4.2-3.fc39.ppc64le. 921 kB/s | 253 kB     00:00    
(37/154): basesystem-11-18.fc39.noarch.rpm       32 kB/s | 7.2 kB     00:00    
(38/154): bash-5.2.15-5.fc39.ppc64le.rpm        5.5 MB/s | 1.9 MB     00:00    
(39/154): binutils-gold-2.41-5.fc40.ppc64le.rpm 3.5 MB/s | 1.1 MB     00:00    
(40/154): bzip2-1.0.8-16.fc39.ppc64le.rpm       675 kB/s |  53 kB     00:00    
(41/154): bzip2-libs-1.0.8-16.fc39.ppc64le.rpm  576 kB/s |  47 kB     00:00    
(42/154): binutils-2.41-5.fc40.ppc64le.rpm       13 MB/s | 6.4 MB     00:00    
(43/154): ca-certificates-2023.2.60_v7.0.306-3. 5.9 MB/s | 837 kB     00:00    
(44/154): cpio-2.14-4.fc39.ppc64le.rpm          3.0 MB/s | 286 kB     00:00    
(45/154): coreutils-common-9.4-1.fc40.ppc64le.r  18 MB/s | 2.1 MB     00:00    
(46/154): coreutils-9.4-1.fc40.ppc64le.rpm      7.8 MB/s | 1.4 MB     00:00    
(47/154): debugedit-5.0-10.fc39.ppc64le.rpm     1.2 MB/s |  80 kB     00:00    
(48/154): crypto-policies-20230731-1.git5ed06e0 1.1 MB/s |  99 kB     00:00    
(49/154): diffutils-3.10-3.fc39.ppc64le.rpm     4.3 MB/s | 408 kB     00:00    
(50/154): ed-1.19-4.fc39.ppc64le.rpm            1.2 MB/s |  81 kB     00:00    
(51/154): dwz-0.15-3.fc39.ppc64le.rpm           1.9 MB/s | 147 kB     00:00    
(52/154): efi-srpm-macros-5-9.fc39.noarch.rpm   335 kB/s |  22 kB     00:00    
(53/154): fedora-gpg-keys-40-0.1.noarch.rpm     1.8 MB/s | 130 kB     00:00    
(54/154): fedora-release-40-0.7.noarch.rpm      121 kB/s | 8.0 kB     00:00    
(55/154): fedora-release-common-40-0.7.noarch.r 214 kB/s |  18 kB     00:00    
(56/154): fedora-release-identity-basic-40-0.7. 133 kB/s | 8.8 kB     00:00    
(57/154): fedora-repos-40-0.1.noarch.rpm        142 kB/s | 9.4 kB     00:00    
(58/154): fedora-repos-rawhide-40-0.1.noarch.rp  65 kB/s | 9.0 kB     00:00    
(59/154): findutils-4.9.0-6.fc40.ppc64le.rpm    3.9 MB/s | 540 kB     00:00    
(60/154): filesystem-3.18-6.fc39.ppc64le.rpm    6.1 MB/s | 1.1 MB     00:00    
(61/154): fonts-srpm-macros-2.0.5-12.fc39.noarc 399 kB/s |  26 kB     00:00    
(62/154): forge-srpm-macros-0.1.0-1.fc40.noarch 275 kB/s |  18 kB     00:00    
(63/154): fpc-srpm-macros-1.3-8.fc39.noarch.rpm  99 kB/s | 7.4 kB     00:00    
(64/154): gawk-5.2.2-2.fc39.ppc64le.rpm         9.7 MB/s | 1.1 MB     00:00    
(65/154): gdbm-libs-1.23-4.fc39.ppc64le.rpm     924 kB/s |  62 kB     00:00    
(66/154): ghc-srpm-macros-1.6.1-2.fc39.noarch.r 117 kB/s | 7.8 kB     00:00    
(67/154): gdb-minimal-13.2-8.fc40.ppc64le.rpm    19 MB/s | 4.2 MB     00:00    
(68/154): gmp-6.2.1-5.fc39.ppc64le.rpm          2.9 MB/s | 304 kB     00:00    
(69/154): gnat-srpm-macros-6-3.fc39.noarch.rpm  114 kB/s | 8.8 kB     00:00    
(70/154): go-srpm-macros-3.2.0-7.fc40.noarch.rp 411 kB/s |  27 kB     00:00    
(71/154): grep-3.11-5.fc40.ppc64le.rpm          4.0 MB/s | 308 kB     00:00    
(72/154): gzip-1.12-6.fc39.ppc64le.rpm          2.0 MB/s | 170 kB     00:00    
(73/154): info-7.0.3-3.fc39.ppc64le.rpm         2.8 MB/s | 200 kB     00:00    
(74/154): jansson-2.13.1-7.fc39.ppc64le.rpm     734 kB/s |  49 kB     00:00    
(75/154): kernel-srpm-macros-1.0-20.fc39.noarch 158 kB/s |  10 kB     00:00    
(76/154): keyutils-libs-1.6.1-7.fc39.ppc64le.rp 388 kB/s |  32 kB     00:00    
(77/154): krb5-libs-1.21.2-1.fc40.ppc64le.rpm   9.2 MB/s | 850 kB     00:00    
(78/154): libattr-2.5.1-9.fc40.ppc64le.rpm      280 kB/s |  19 kB     00:00    
(79/154): libacl-2.3.1-9.fc40.ppc64le.rpm       224 kB/s |  26 kB     00:00    
(80/154): libbrotli-1.1.0-1.fc40.ppc64le.rpm    3.8 MB/s | 380 kB     00:00    
(81/154): libcap-2.48-7.fc39.ppc64le.rpm        1.1 MB/s |  73 kB     00:00    
(82/154): libcap-ng-0.8.3-8.fc40.ppc64le.rpm    354 kB/s |  33 kB     00:00    
(83/154): libcom_err-1.47.0-2.fc39.ppc64le.rpm  358 kB/s |  27 kB     00:00    
(84/154): libeconf-0.5.2-1.fc40.ppc64le.rpm     512 kB/s |  34 kB     00:00    
(85/154): libevent-2.1.12-9.fc39.ppc64le.rpm    3.1 MB/s | 275 kB     00:00    
(86/154): libffi-3.4.4-4.fc39.ppc64le.rpm       571 kB/s |  38 kB     00:00    
(87/154): libgcc-13.2.1-1.fc39.ppc64le.rpm      1.5 MB/s | 104 kB     00:00    
(88/154): libidn2-2.3.4-3.fc39.ppc64le.rpm      1.7 MB/s | 121 kB     00:00    
(89/154): libnsl2-2.0.0-6.fc39.ppc64le.rpm      481 kB/s |  32 kB     00:00    
(90/154): libgomp-13.2.1-1.fc39.ppc64le.rpm     3.4 MB/s | 332 kB     00:00    
(91/154): libpkgconf-1.9.5-2.fc39.ppc64le.rpm   570 kB/s |  42 kB     00:00    
(92/154): libpwquality-1.4.5-6.fc39.ppc64le.rpm 1.7 MB/s | 123 kB     00:00    
(93/154): librtas-2.0.4-3.fc39.ppc64le.rpm      1.0 MB/s |  70 kB     00:00    
(94/154): libselinux-3.5-5.fc39.ppc64le.rpm     1.4 MB/s | 100 kB     00:00    
(95/154): libpsl-0.21.2-4.fc39.ppc64le.rpm      416 kB/s |  65 kB     00:00    
(96/154): libsemanage-3.5-4.fc39.ppc64le.rpm    1.8 MB/s | 131 kB     00:00    
(97/154): libsepol-3.5-2.fc39.ppc64le.rpm       4.7 MB/s | 356 kB     00:00    
(98/154): libsigsegv-2.14-5.fc39.ppc64le.rpm    414 kB/s |  28 kB     00:00    
(99/154): libssh-0.10.5-2.fc39.ppc64le.rpm      2.9 MB/s | 238 kB     00:00    
(100/154): libssh-config-0.10.5-2.fc39.noarch.r 139 kB/s | 9.2 kB     00:00    
(101/154): libstdc++-13.2.1-1.fc39.ppc64le.rpm   12 MB/s | 994 kB     00:00    
(102/154): libtasn1-4.19.0-3.fc39.ppc64le.rpm   1.1 MB/s |  80 kB     00:00    
(103/154): libtirpc-1.3.3-1.rc2.fc39.ppc64le.rp 1.5 MB/s | 108 kB     00:00    
(104/154): libunistring-1.1-5.fc40.ppc64le.rpm  6.2 MB/s | 578 kB     00:00    
(105/154): libverto-0.3.2-6.fc39.ppc64le.rpm    289 kB/s |  22 kB     00:00    
(106/154): libutempter-1.2.1-10.fc39.ppc64le.rp 309 kB/s |  27 kB     00:00    
(107/154): libxcrypt-4.4.36-2.fc39.ppc64le.rpm  1.7 MB/s | 132 kB     00:00    
(108/154): lua-libs-5.4.6-3.fc39.ppc64le.rpm    2.1 MB/s | 149 kB     00:00    
(109/154): lua-srpm-macros-1-9.fc39.noarch.rpm  131 kB/s | 8.6 kB     00:00    
(110/154): lz4-libs-1.9.4-4.fc39.ppc64le.rpm    1.0 MB/s |  85 kB     00:00    
(111/154): mpfr-4.2.0-3.fc39.ppc64le.rpm        4.7 MB/s | 353 kB     00:00    
(112/154): ncurses-base-6.4-7.20230520.fc40.noa 1.1 MB/s |  88 kB     00:00    
(113/154): ncurses-libs-6.4-7.20230520.fc40.ppc 5.2 MB/s | 380 kB     00:00    
(114/154): ocaml-srpm-macros-8-2.fc39.noarch.rp 202 kB/s |  14 kB     00:00    
(115/154): openblas-srpm-macros-2-14.fc39.noarc  67 kB/s | 7.5 kB     00:00    
(116/154): p11-kit-0.25.0-2.fc39.ppc64le.rpm    6.2 MB/s | 500 kB     00:00    
(117/154): openldap-2.6.6-1.fc39.ppc64le.rpm    2.9 MB/s | 287 kB     00:00    
(118/154): p11-kit-trust-0.25.0-2.fc39.ppc64le. 1.9 MB/s | 156 kB     00:00    
(119/154): package-notes-srpm-macros-0.5-9.fc39 168 kB/s |  11 kB     00:00    
(120/154): pam-1.5.3-2.fc39.ppc64le.rpm         5.8 MB/s | 592 kB     00:00    
(121/154): pam-libs-1.5.3-2.fc39.ppc64le.rpm    957 kB/s |  64 kB     00:00    
(122/154): patch-2.7.6-22.fc39.ppc64le.rpm      1.5 MB/s | 137 kB     00:00    
(123/154): pcre2-10.42-1.fc39.2.ppc64le.rpm     3.1 MB/s | 241 kB     00:00    
(124/154): pcre2-syntax-10.42-1.fc39.2.noarch.r 2.0 MB/s | 143 kB     00:00    
(125/154): perl-srpm-macros-1-51.fc39.noarch.rp  97 kB/s | 8.0 kB     00:00    
(126/154): pkgconf-m4-1.9.5-2.fc39.noarch.rpm   170 kB/s |  14 kB     00:00    
(127/154): pkgconf-1.9.5-2.fc39.ppc64le.rpm     423 kB/s |  43 kB     00:00    
(128/154): pkgconf-pkg-config-1.9.5-2.fc39.ppc6 102 kB/s | 9.6 kB     00:00    
(129/154): publicsuffix-list-dafsa-20230812-1.f 858 kB/s |  57 kB     00:00    
(130/154): popt-1.19-3.fc39.ppc64le.rpm         818 kB/s |  71 kB     00:00    
(131/154): pyproject-srpm-macros-1.9.0-2.fc39.n 211 kB/s |  14 kB     00:00    
(132/154): python-srpm-macros-3.12-4.fc40.noarc 375 kB/s |  25 kB     00:00    
(133/154): qt5-srpm-macros-5.15.10-2.fc39.noarc 126 kB/s | 8.3 kB     00:00    
(134/154): readline-8.2-4.fc39.ppc64le.rpm      3.1 MB/s | 229 kB     00:00    
(135/154): qt6-srpm-macros-6.5.2-2.fc39.noarch. 102 kB/s | 9.2 kB     00:00    
(136/154): rpm-4.18.99-1.fc40.ppc64le.rpm       5.5 MB/s | 537 kB     00:00    
(137/154): rpm-build-4.18.99-1.fc40.ppc64le.rpm 1.2 MB/s |  80 kB     00:00    
(138/154): rpm-build-libs-4.18.99-1.fc40.ppc64l 1.2 MB/s | 103 kB     00:00    
(139/154): rpm-libs-4.18.99-1.fc40.ppc64le.rpm  4.6 MB/s | 356 kB     00:00    
(140/154): rpm-sequoia-1.5.0-1.fc40.ppc64le.rpm  15 MB/s | 1.7 MB     00:00    
(141/154): sed-4.8-14.fc39.ppc64le.rpm          3.7 MB/s | 312 kB     00:00    
(142/154): setup-2.14.4-1.fc39.noarch.rpm       2.0 MB/s | 154 kB     00:00    
(143/154): rust-srpm-macros-24-5.fc40.noarch.rp  70 kB/s |  12 kB     00:00    
(144/154): shadow-utils-4.14.0-1.fc40.ppc64le.r  10 MB/s | 1.3 MB     00:00    
(145/154): systemd-libs-254.1-2.fc40.ppc64le.rp 9.3 MB/s | 733 kB     00:00    
(146/154): sqlite-libs-3.43.1-1.fc40.ppc64le.rp 8.6 MB/s | 798 kB     00:00    
(147/154): tar-1.35-2.fc40.ppc64le.rpm          8.9 MB/s | 884 kB     00:00    
(148/154): unzip-6.0-62.fc39.ppc64le.rpm        2.3 MB/s | 190 kB     00:00    
(149/154): tzdata-2023c-3.fc40.noarch.rpm       7.3 MB/s | 718 kB     00:00    
(150/154): which-2.21-40.fc39.ppc64le.rpm       555 kB/s |  43 kB     00:00    
(151/154): xxhash-libs-0.8.2-1.fc39.ppc64le.rpm 450 kB/s |  37 kB     00:00    
(152/154): xz-5.4.4-1.fc39.ppc64le.rpm          6.1 MB/s | 559 kB     00:00    
(153/154): xz-libs-5.4.4-1.fc39.ppc64le.rpm     1.7 MB/s | 121 kB     00:00    
(154/154): zip-3.0-38.fc39.ppc64le.rpm          3.7 MB/s | 274 kB     00:00    
--------------------------------------------------------------------------------
Total                                            12 MB/s |  57 MB     00:04     
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0xA15B79CC:
 Userid     : "Fedora (40) <fedora-40-primary@fedoraproject.org>"
 Fingerprint: 115D F9AE F857 853E E844 5D0A 0727 707E A15B 79CC
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary
Key imported successfully
fedora                                          1.6 MB/s | 1.6 kB     00:00    
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary (0xA15B79CC) is already installed
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0x18B8E74C:
 Userid     : "Fedora (39) <fedora-39-primary@fedoraproject.org>"
 Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.18-6.fc39.ppc64le                         1/1 
  Preparing        :                                                        1/1 
  Installing       : libgcc-13.2.1-1.fc39.ppc64le                         1/154 
  Running scriptlet: libgcc-13.2.1-1.fc39.ppc64le                         1/154 
  Installing       : crypto-policies-20230731-1.git5ed06e0.fc39.noarc     2/154 
  Running scriptlet: crypto-policies-20230731-1.git5ed06e0.fc39.noarc     2/154 
  Installing       : tzdata-2023c-3.fc40.noarch                           3/154 
  Installing       : fedora-release-identity-basic-40-0.7.noarch          4/154 
  Installing       : fedora-repos-rawhide-40-0.1.noarch                   5/154 
  Installing       : fedora-gpg-keys-40-0.1.noarch                        6/154 
  Installing       : fedora-repos-40-0.1.noarch                           7/154 
  Installing       : fedora-release-common-40-0.7.noarch                  8/154 
  Installing       : fedora-release-40-0.7.noarch                         9/154 
  Installing       : setup-2.14.4-1.fc39.noarch                          10/154 
warning: /etc/hosts created as /etc/hosts.rpmnew

  Running scriptlet: setup-2.14.4-1.fc39.noarch                          10/154 
  Installing       : filesystem-3.18-6.fc39.ppc64le                      11/154 
  Installing       : basesystem-11-18.fc39.noarch                        12/154 
  Installing       : rust-srpm-macros-24-5.fc40.noarch                   13/154 
  Installing       : qt6-srpm-macros-6.5.2-2.fc39.noarch                 14/154 
  Installing       : qt5-srpm-macros-5.15.10-2.fc39.noarch               15/154 
  Installing       : pyproject-srpm-macros-1.9.0-2.fc39.noarch           16/154 
  Installing       : publicsuffix-list-dafsa-20230812-1.fc40.noarch      17/154 
  Installing       : pkgconf-m4-1.9.5-2.fc39.noarch                      18/154 
  Installing       : perl-srpm-macros-1-51.fc39.noarch                   19/154 
  Installing       : pcre2-syntax-10.42-1.fc39.2.noarch                  20/154 
  Installing       : package-notes-srpm-macros-0.5-9.fc39.noarch         21/154 
  Installing       : openblas-srpm-macros-2-14.fc39.noarch               22/154 
  Installing       : ocaml-srpm-macros-8-2.fc39.noarch                   23/154 
  Installing       : ncurses-base-6.4-7.20230520.fc40.noarch             24/154 
  Installing       : glibc-gconv-extra-2.38.9000-8.fc40.ppc64le          25/154 
  Running scriptlet: glibc-gconv-extra-2.38.9000-8.fc40.ppc64le          25/154 
  Installing       : glibc-minimal-langpack-2.38.9000-8.fc40.ppc64le     26/154 
  Installing       : glibc-common-2.38.9000-8.fc40.ppc64le               27/154 
  Running scriptlet: glibc-2.38.9000-8.fc40.ppc64le                      28/154 
  Installing       : glibc-2.38.9000-8.fc40.ppc64le                      28/154 
  Running scriptlet: glibc-2.38.9000-8.fc40.ppc64le                      28/154 
  Installing       : ncurses-libs-6.4-7.20230520.fc40.ppc64le            29/154 
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  Verifying        : pyproject-srpm-macros-1.9.0-2.fc39.noarch          131/154 
  Verifying        : python-srpm-macros-3.12-4.fc40.noarch              132/154 
  Verifying        : qt5-srpm-macros-5.15.10-2.fc39.noarch              133/154 
  Verifying        : qt6-srpm-macros-6.5.2-2.fc39.noarch                134/154 
  Verifying        : readline-8.2-4.fc39.ppc64le                        135/154 
  Verifying        : rpm-4.18.99-1.fc40.ppc64le                         136/154 
  Verifying        : rpm-build-4.18.99-1.fc40.ppc64le                   137/154 
  Verifying        : rpm-build-libs-4.18.99-1.fc40.ppc64le              138/154 
  Verifying        : rpm-libs-4.18.99-1.fc40.ppc64le                    139/154 
  Verifying        : rpm-sequoia-1.5.0-1.fc40.ppc64le                   140/154 
  Verifying        : rust-srpm-macros-24-5.fc40.noarch                  141/154 
  Verifying        : sed-4.8-14.fc39.ppc64le                            142/154 
  Verifying        : setup-2.14.4-1.fc39.noarch                         143/154 
  Verifying        : shadow-utils-2:4.14.0-1.fc40.ppc64le               144/154 
  Verifying        : sqlite-libs-3.43.1-1.fc40.ppc64le                  145/154 
  Verifying        : systemd-libs-254.1-2.fc40.ppc64le                  146/154 
  Verifying        : tar-2:1.35-2.fc40.ppc64le                          147/154 
  Verifying        : tzdata-2023c-3.fc40.noarch                         148/154 
  Verifying        : unzip-6.0-62.fc39.ppc64le                          149/154 
  Verifying        : which-2.21-40.fc39.ppc64le                         150/154 
  Verifying        : xxhash-libs-0.8.2-1.fc39.ppc64le                   151/154 
  Verifying        : xz-5.4.4-1.fc39.ppc64le                            152/154 
  Verifying        : xz-libs-5.4.4-1.fc39.ppc64le                       153/154 
  Verifying        : zip-3.0-38.fc39.ppc64le                            154/154 

Installed:
  alternatives-1.25-1.fc39.ppc64le                                              
  ansible-srpm-macros-1-11.fc39.noarch                                          
  audit-libs-3.1.2-4.fc40.ppc64le                                               
  authselect-1.4.2-3.fc39.ppc64le                                               
  authselect-libs-1.4.2-3.fc39.ppc64le                                          
  basesystem-11-18.fc39.noarch                                                  
  bash-5.2.15-5.fc39.ppc64le                                                    
  binutils-2.41-5.fc40.ppc64le                                                  
  binutils-gold-2.41-5.fc40.ppc64le                                             
  bzip2-1.0.8-16.fc39.ppc64le                                                   
  bzip2-libs-1.0.8-16.fc39.ppc64le                                              
  ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch                              
  coreutils-9.4-1.fc40.ppc64le                                                  
  coreutils-common-9.4-1.fc40.ppc64le                                           
  cpio-2.14-4.fc39.ppc64le                                                      
  cracklib-2.9.11-2.fc40.ppc64le                                                
  crypto-policies-20230731-1.git5ed06e0.fc39.noarch                             
  curl-8.3.0-1.fc40.ppc64le                                                     
  cyrus-sasl-lib-2.1.28-11.fc40.ppc64le                                         
  debugedit-5.0-10.fc39.ppc64le                                                 
  diffutils-3.10-3.fc39.ppc64le                                                 
  dwz-0.15-3.fc39.ppc64le                                                       
  ed-1.19-4.fc39.ppc64le                                                        
  efi-srpm-macros-5-9.fc39.noarch                                               
  elfutils-0.189-6.fc40.ppc64le                                                 
  elfutils-debuginfod-client-0.189-6.fc40.ppc64le                               
  elfutils-default-yama-scope-0.189-6.fc40.noarch                               
  elfutils-libelf-0.189-6.fc40.ppc64le                                          
  elfutils-libs-0.189-6.fc40.ppc64le                                            
  fedora-gpg-keys-40-0.1.noarch                                                 
  fedora-release-40-0.7.noarch                                                  
  fedora-release-common-40-0.7.noarch                                           
  fedora-release-identity-basic-40-0.7.noarch                                   
  fedora-repos-40-0.1.noarch                                                    
  fedora-repos-rawhide-40-0.1.noarch                                            
  file-5.45-1.fc40.ppc64le                                                      
  file-libs-5.45-1.fc40.ppc64le                                                 
  filesystem-3.18-6.fc39.ppc64le                                                
  findutils-1:4.9.0-6.fc40.ppc64le                                              
  fonts-srpm-macros-1:2.0.5-12.fc39.noarch                                      
  forge-srpm-macros-0.1.0-1.fc40.noarch                                         
  fpc-srpm-macros-1.3-8.fc39.noarch                                             
  gawk-5.2.2-2.fc39.ppc64le                                                     
  gdb-minimal-13.2-8.fc40.ppc64le                                               
  gdbm-libs-1:1.23-4.fc39.ppc64le                                               
  ghc-srpm-macros-1.6.1-2.fc39.noarch                                           
  glibc-2.38.9000-8.fc40.ppc64le                                                
  glibc-common-2.38.9000-8.fc40.ppc64le                                         
  glibc-gconv-extra-2.38.9000-8.fc40.ppc64le                                    
  glibc-minimal-langpack-2.38.9000-8.fc40.ppc64le                               
  gmp-1:6.2.1-5.fc39.ppc64le                                                    
  gnat-srpm-macros-6-3.fc39.noarch                                              
  go-srpm-macros-3.2.0-7.fc40.noarch                                            
  grep-3.11-5.fc40.ppc64le                                                      
  gzip-1.12-6.fc39.ppc64le                                                      
  info-7.0.3-3.fc39.ppc64le                                                     
  jansson-2.13.1-7.fc39.ppc64le                                                 
  kernel-srpm-macros-1.0-20.fc39.noarch                                         
  keyutils-libs-1.6.1-7.fc39.ppc64le                                            
  krb5-libs-1.21.2-1.fc40.ppc64le                                               
  libacl-2.3.1-9.fc40.ppc64le                                                   
  libarchive-3.7.2-1.fc40.ppc64le                                               
  libattr-2.5.1-9.fc40.ppc64le                                                  
  libblkid-2.39.2-1.fc40.ppc64le                                                
  libbrotli-1.1.0-1.fc40.ppc64le                                                
  libcap-2.48-7.fc39.ppc64le                                                    
  libcap-ng-0.8.3-8.fc40.ppc64le                                                
  libcom_err-1.47.0-2.fc39.ppc64le                                              
  libcurl-8.3.0-1.fc40.ppc64le                                                  
  libdb-5.3.28-58.fc40.ppc64le                                                  
  libeconf-0.5.2-1.fc40.ppc64le                                                 
  libevent-2.1.12-9.fc39.ppc64le                                                
  libfdisk-2.39.2-1.fc40.ppc64le                                                
  libffi-3.4.4-4.fc39.ppc64le                                                   
  libgcc-13.2.1-1.fc39.ppc64le                                                  
  libgomp-13.2.1-1.fc39.ppc64le                                                 
  libidn2-2.3.4-3.fc39.ppc64le                                                  
  libmount-2.39.2-1.fc40.ppc64le                                                
  libnghttp2-1.56.0-1.fc40.ppc64le                                              
  libnsl2-2.0.0-6.fc39.ppc64le                                                  
  libpkgconf-1.9.5-2.fc39.ppc64le                                               
  libpsl-0.21.2-4.fc39.ppc64le                                                  
  libpwquality-1.4.5-6.fc39.ppc64le                                             
  librtas-2.0.4-3.fc39.ppc64le                                                  
  libselinux-3.5-5.fc39.ppc64le                                                 
  libsemanage-3.5-4.fc39.ppc64le                                                
  libsepol-3.5-2.fc39.ppc64le                                                   
  libsigsegv-2.14-5.fc39.ppc64le                                                
  libsmartcols-2.39.2-1.fc40.ppc64le                                            
  libssh-0.10.5-2.fc39.ppc64le                                                  
  libssh-config-0.10.5-2.fc39.noarch                                            
  libstdc++-13.2.1-1.fc39.ppc64le                                               
  libtasn1-4.19.0-3.fc39.ppc64le                                                
  libtirpc-1.3.3-1.rc2.fc39.ppc64le                                             
  libunistring-1.1-5.fc40.ppc64le                                               
  libutempter-1.2.1-10.fc39.ppc64le                                             
  libuuid-2.39.2-1.fc40.ppc64le                                                 
  libverto-0.3.2-6.fc39.ppc64le                                                 
  libxcrypt-4.4.36-2.fc39.ppc64le                                               
  libxml2-2.11.5-1.fc40.ppc64le                                                 
  libzstd-1.5.5-4.fc40.ppc64le                                                  
  lua-libs-5.4.6-3.fc39.ppc64le                                                 
  lua-srpm-macros-1-9.fc39.noarch                                               
  lz4-libs-1.9.4-4.fc39.ppc64le                                                 
  mpfr-4.2.0-3.fc39.ppc64le                                                     
  ncurses-base-6.4-7.20230520.fc40.noarch                                       
  ncurses-libs-6.4-7.20230520.fc40.ppc64le                                      
  ocaml-srpm-macros-8-2.fc39.noarch                                             
  openblas-srpm-macros-2-14.fc39.noarch                                         
  openldap-2.6.6-1.fc39.ppc64le                                                 
  openssl-libs-1:3.1.1-4.fc40.ppc64le                                           
  p11-kit-0.25.0-2.fc39.ppc64le                                                 
  p11-kit-trust-0.25.0-2.fc39.ppc64le                                           
  package-notes-srpm-macros-0.5-9.fc39.noarch                                   
  pam-1.5.3-2.fc39.ppc64le                                                      
  pam-libs-1.5.3-2.fc39.ppc64le                                                 
  patch-2.7.6-22.fc39.ppc64le                                                   
  pcre2-10.42-1.fc39.2.ppc64le                                                  
  pcre2-syntax-10.42-1.fc39.2.noarch                                            
  perl-srpm-macros-1-51.fc39.noarch                                             
  pkgconf-1.9.5-2.fc39.ppc64le                                                  
  pkgconf-m4-1.9.5-2.fc39.noarch                                                
  pkgconf-pkg-config-1.9.5-2.fc39.ppc64le                                       
  popt-1.19-3.fc39.ppc64le                                                      
  publicsuffix-list-dafsa-20230812-1.fc40.noarch                                
  pyproject-srpm-macros-1.9.0-2.fc39.noarch                                     
  python-srpm-macros-3.12-4.fc40.noarch                                         
  qt5-srpm-macros-5.15.10-2.fc39.noarch                                         
  qt6-srpm-macros-6.5.2-2.fc39.noarch                                           
  readline-8.2-4.fc39.ppc64le                                                   
  redhat-rpm-config-270-1.fc40.noarch                                           
  rpm-4.18.99-1.fc40.ppc64le                                                    
  rpm-build-4.18.99-1.fc40.ppc64le                                              
  rpm-build-libs-4.18.99-1.fc40.ppc64le                                         
  rpm-libs-4.18.99-1.fc40.ppc64le                                               
  rpm-sequoia-1.5.0-1.fc40.ppc64le                                              
  rust-srpm-macros-24-5.fc40.noarch                                             
  sed-4.8-14.fc39.ppc64le                                                       
  setup-2.14.4-1.fc39.noarch                                                    
  shadow-utils-2:4.14.0-1.fc40.ppc64le                                          
  sqlite-libs-3.43.1-1.fc40.ppc64le                                             
  systemd-libs-254.1-2.fc40.ppc64le                                             
  tar-2:1.35-2.fc40.ppc64le                                                     
  tzdata-2023c-3.fc40.noarch                                                    
  unzip-6.0-62.fc39.ppc64le                                                     
  util-linux-2.39.2-1.fc40.ppc64le                                              
  util-linux-core-2.39.2-1.fc40.ppc64le                                         
  which-2.21-40.fc39.ppc64le                                                    
  xxhash-libs-0.8.2-1.fc39.ppc64le                                              
  xz-5.4.4-1.fc39.ppc64le                                                       
  xz-libs-5.4.4-1.fc39.ppc64le                                                  
  zip-3.0-38.fc39.ppc64le                                                       
  zlib-ng-compat-2.1.3-3.fc40.ppc64le                                           
  zstd-1.5.5-4.fc40.ppc64le                                                     

Complete!
Finish: installing minimal buildroot with dnf
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: alternatives-1.25-1.fc39.ppc64le
ansible-srpm-macros-1-11.fc39.noarch
audit-libs-3.1.2-4.fc40.ppc64le
authselect-1.4.2-3.fc39.ppc64le
authselect-libs-1.4.2-3.fc39.ppc64le
basesystem-11-18.fc39.noarch
bash-5.2.15-5.fc39.ppc64le
binutils-2.41-5.fc40.ppc64le
binutils-gold-2.41-5.fc40.ppc64le
bzip2-1.0.8-16.fc39.ppc64le
bzip2-libs-1.0.8-16.fc39.ppc64le
ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch
coreutils-9.4-1.fc40.ppc64le
coreutils-common-9.4-1.fc40.ppc64le
cpio-2.14-4.fc39.ppc64le
cracklib-2.9.11-2.fc40.ppc64le
crypto-policies-20230731-1.git5ed06e0.fc39.noarch
curl-8.3.0-1.fc40.ppc64le
cyrus-sasl-lib-2.1.28-11.fc40.ppc64le
debugedit-5.0-10.fc39.ppc64le
diffutils-3.10-3.fc39.ppc64le
dwz-0.15-3.fc39.ppc64le
ed-1.19-4.fc39.ppc64le
efi-srpm-macros-5-9.fc39.noarch
elfutils-0.189-6.fc40.ppc64le
elfutils-debuginfod-client-0.189-6.fc40.ppc64le
elfutils-default-yama-scope-0.189-6.fc40.noarch
elfutils-libelf-0.189-6.fc40.ppc64le
elfutils-libs-0.189-6.fc40.ppc64le
fedora-gpg-keys-40-0.1.noarch
fedora-release-40-0.7.noarch
fedora-release-common-40-0.7.noarch
fedora-release-identity-basic-40-0.7.noarch
fedora-repos-40-0.1.noarch
fedora-repos-rawhide-40-0.1.noarch
file-5.45-1.fc40.ppc64le
file-libs-5.45-1.fc40.ppc64le
filesystem-3.18-6.fc39.ppc64le
findutils-4.9.0-6.fc40.ppc64le
fonts-srpm-macros-2.0.5-12.fc39.noarch
forge-srpm-macros-0.1.0-1.fc40.noarch
fpc-srpm-macros-1.3-8.fc39.noarch
gawk-5.2.2-2.fc39.ppc64le
gdb-minimal-13.2-8.fc40.ppc64le
gdbm-libs-1.23-4.fc39.ppc64le
ghc-srpm-macros-1.6.1-2.fc39.noarch
glibc-2.38.9000-8.fc40.ppc64le
glibc-common-2.38.9000-8.fc40.ppc64le
glibc-gconv-extra-2.38.9000-8.fc40.ppc64le
glibc-minimal-langpack-2.38.9000-8.fc40.ppc64le
gmp-6.2.1-5.fc39.ppc64le
gnat-srpm-macros-6-3.fc39.noarch
go-srpm-macros-3.2.0-7.fc40.noarch
gpg-pubkey-18b8e74c-62f2920f
gpg-pubkey-a15b79cc-63d04c2c
grep-3.11-5.fc40.ppc64le
gzip-1.12-6.fc39.ppc64le
info-7.0.3-3.fc39.ppc64le
jansson-2.13.1-7.fc39.ppc64le
kernel-srpm-macros-1.0-20.fc39.noarch
keyutils-libs-1.6.1-7.fc39.ppc64le
krb5-libs-1.21.2-1.fc40.ppc64le
libacl-2.3.1-9.fc40.ppc64le
libarchive-3.7.2-1.fc40.ppc64le
libattr-2.5.1-9.fc40.ppc64le
libblkid-2.39.2-1.fc40.ppc64le
libbrotli-1.1.0-1.fc40.ppc64le
libcap-2.48-7.fc39.ppc64le
libcap-ng-0.8.3-8.fc40.ppc64le
libcom_err-1.47.0-2.fc39.ppc64le
libcurl-8.3.0-1.fc40.ppc64le
libdb-5.3.28-58.fc40.ppc64le
libeconf-0.5.2-1.fc40.ppc64le
libevent-2.1.12-9.fc39.ppc64le
libfdisk-2.39.2-1.fc40.ppc64le
libffi-3.4.4-4.fc39.ppc64le
libgcc-13.2.1-1.fc39.ppc64le
libgomp-13.2.1-1.fc39.ppc64le
libidn2-2.3.4-3.fc39.ppc64le
libmount-2.39.2-1.fc40.ppc64le
libnghttp2-1.56.0-1.fc40.ppc64le
libnsl2-2.0.0-6.fc39.ppc64le
libpkgconf-1.9.5-2.fc39.ppc64le
libpsl-0.21.2-4.fc39.ppc64le
libpwquality-1.4.5-6.fc39.ppc64le
librtas-2.0.4-3.fc39.ppc64le
libselinux-3.5-5.fc39.ppc64le
libsemanage-3.5-4.fc39.ppc64le
libsepol-3.5-2.fc39.ppc64le
libsigsegv-2.14-5.fc39.ppc64le
libsmartcols-2.39.2-1.fc40.ppc64le
libssh-0.10.5-2.fc39.ppc64le
libssh-config-0.10.5-2.fc39.noarch
libstdc++-13.2.1-1.fc39.ppc64le
libtasn1-4.19.0-3.fc39.ppc64le
libtirpc-1.3.3-1.rc2.fc39.ppc64le
libunistring-1.1-5.fc40.ppc64le
libutempter-1.2.1-10.fc39.ppc64le
libuuid-2.39.2-1.fc40.ppc64le
libverto-0.3.2-6.fc39.ppc64le
libxcrypt-4.4.36-2.fc39.ppc64le
libxml2-2.11.5-1.fc40.ppc64le
libzstd-1.5.5-4.fc40.ppc64le
lua-libs-5.4.6-3.fc39.ppc64le
lua-srpm-macros-1-9.fc39.noarch
lz4-libs-1.9.4-4.fc39.ppc64le
mpfr-4.2.0-3.fc39.ppc64le
ncurses-base-6.4-7.20230520.fc40.noarch
ncurses-libs-6.4-7.20230520.fc40.ppc64le
ocaml-srpm-macros-8-2.fc39.noarch
openblas-srpm-macros-2-14.fc39.noarch
openldap-2.6.6-1.fc39.ppc64le
openssl-libs-3.1.1-4.fc40.ppc64le
p11-kit-0.25.0-2.fc39.ppc64le
p11-kit-trust-0.25.0-2.fc39.ppc64le
package-notes-srpm-macros-0.5-9.fc39.noarch
pam-1.5.3-2.fc39.ppc64le
pam-libs-1.5.3-2.fc39.ppc64le
patch-2.7.6-22.fc39.ppc64le
pcre2-10.42-1.fc39.2.ppc64le
pcre2-syntax-10.42-1.fc39.2.noarch
perl-srpm-macros-1-51.fc39.noarch
pkgconf-1.9.5-2.fc39.ppc64le
pkgconf-m4-1.9.5-2.fc39.noarch
pkgconf-pkg-config-1.9.5-2.fc39.ppc64le
popt-1.19-3.fc39.ppc64le
publicsuffix-list-dafsa-20230812-1.fc40.noarch
pyproject-srpm-macros-1.9.0-2.fc39.noarch
python-srpm-macros-3.12-4.fc40.noarch
qt5-srpm-macros-5.15.10-2.fc39.noarch
qt6-srpm-macros-6.5.2-2.fc39.noarch
readline-8.2-4.fc39.ppc64le
redhat-rpm-config-270-1.fc40.noarch
rpm-4.18.99-1.fc40.ppc64le
rpm-build-4.18.99-1.fc40.ppc64le
rpm-build-libs-4.18.99-1.fc40.ppc64le
rpm-libs-4.18.99-1.fc40.ppc64le
rpm-sequoia-1.5.0-1.fc40.ppc64le
rust-srpm-macros-24-5.fc40.noarch
sed-4.8-14.fc39.ppc64le
setup-2.14.4-1.fc39.noarch
shadow-utils-4.14.0-1.fc40.ppc64le
sqlite-libs-3.43.1-1.fc40.ppc64le
systemd-libs-254.1-2.fc40.ppc64le
tar-1.35-2.fc40.ppc64le
tzdata-2023c-3.fc40.noarch
unzip-6.0-62.fc39.ppc64le
util-linux-2.39.2-1.fc40.ppc64le
util-linux-core-2.39.2-1.fc40.ppc64le
which-2.21-40.fc39.ppc64le
xxhash-libs-0.8.2-1.fc39.ppc64le
xz-5.4.4-1.fc39.ppc64le
xz-libs-5.4.4-1.fc39.ppc64le
zip-3.0-38.fc39.ppc64le
zlib-ng-compat-2.1.3-3.fc40.ppc64le
zstd-1.5.5-4.fc40.ppc64le
Start: buildsrpm
Start: rpmbuild -bs
warning: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1689811200
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-16.fc40.src.rpm

RPM build warnings:
    %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Finish: rpmbuild -bs
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-ppc64le-1695067711.503818/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-ppc64le-1695067711.503818/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-ppc64le-1695067711.503818/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-2suzkddz/mmseq/mmseq.spec) Config(child) 4 minutes 42 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-16.fc40.src.rpm)  Config(fedora-rawhide-ppc64le)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1695067711.503818/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1695067711.503818/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-1695067711.503818/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Finish: chroot init
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.18.99-1.fc40.ppc64le
  rpm-sequoia-1.5.0-1.fc40.ppc64le
  python3-dnf-4.16.2-4.fc40.noarch
  python3-dnf-plugins-core-4.4.2-1.fc39.noarch
  yum-4.16.2-4.fc40.noarch
Start: build phase for mmseq-1.0.11-16.fc40.src.rpm
Start: build setup for mmseq-1.0.11-16.fc40.src.rpm
warning: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1689811200
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-16.fc40.src.rpm

RPM build warnings:
    %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                  12 kB/s | 1.5 kB     00:00    
Copr repository                                 4.8 MB/s | 5.2 MB     00:01    
fedora                                           92 kB/s | 6.1 kB     00:00    
Last metadata expiration check: 0:00:01 ago on Mon Sep 18 20:13:45 2023.
Dependencies resolved.
================================================================================
 Package                     Arch    Version                    Repo       Size
================================================================================
Installing:
 armadillo-devel             ppc64le 10.8.2-5.fc39              fedora    2.2 M
 boost-devel                 ppc64le 1.81.0-6.fc40              copr_base  12 M
 flexiblas-devel             ppc64le 3.3.1-5.fc39               fedora    117 k
 gcc-c++                     ppc64le 13.2.1-1.fc39              fedora     12 M
 gsl-devel                   ppc64le 2.7.1-5.fc39               fedora    653 k
 htslib-devel                ppc64le 1.15.1-3.fc40              copr_base 100 k
 make                        ppc64le 1:4.4.1-2.fc39             fedora    604 k
 perl-generators             noarch  1.16-3.fc39                fedora     16 k
 zlib-ng-compat-devel        ppc64le 2.1.3-3.fc40               copr_base  34 k
Installing dependencies:
 SuperLU                     ppc64le 6.0.0-1.fc39               fedora    205 k
 SuperLU-devel               ppc64le 6.0.0-1.fc39               fedora     27 k
 annobin-docs                noarch  12.26-1.fc40               fedora     94 k
 annobin-plugin-gcc          ppc64le 12.26-1.fc40               fedora    961 k
 armadillo                   ppc64le 10.8.2-5.fc39              fedora     39 k
 arpack                      ppc64le 3.8.0-7.fc39               fedora    185 k
 arpack-devel                ppc64le 3.8.0-7.fc39               fedora     14 k
 autoconf                    noarch  2.71-7.fc40                fedora    733 k
 automake                    noarch  1.16.5-14.fc40             fedora    697 k
 boost                       ppc64le 1.81.0-6.fc40              copr_base  15 k
 boost-atomic                ppc64le 1.81.0-6.fc40              copr_base  20 k
 boost-chrono                ppc64le 1.81.0-6.fc40              copr_base  27 k
 boost-container             ppc64le 1.81.0-6.fc40              copr_base  43 k
 boost-context               ppc64le 1.81.0-6.fc40              copr_base  18 k
 boost-contract              ppc64le 1.81.0-6.fc40              copr_base  47 k
 boost-coroutine             ppc64le 1.81.0-6.fc40              copr_base  22 k
 boost-date-time             ppc64le 1.81.0-6.fc40              copr_base  17 k
 boost-fiber                 ppc64le 1.81.0-6.fc40              copr_base  45 k
 boost-filesystem            ppc64le 1.81.0-6.fc40              copr_base  70 k
 boost-graph                 ppc64le 1.81.0-6.fc40              copr_base 159 k
 boost-iostreams             ppc64le 1.81.0-6.fc40              copr_base  42 k
 boost-json                  ppc64le 1.81.0-6.fc40              copr_base 116 k
 boost-locale                ppc64le 1.81.0-6.fc40              copr_base 245 k
 boost-log                   ppc64le 1.81.0-6.fc40              copr_base 522 k
 boost-math                  ppc64le 1.81.0-6.fc40              copr_base 308 k
 boost-nowide                ppc64le 1.81.0-6.fc40              copr_base  22 k
 boost-numpy3                ppc64le 1.81.0-6.fc40              copr_base  31 k
 boost-program-options       ppc64le 1.81.0-6.fc40              copr_base 117 k
 boost-python3               ppc64le 1.81.0-6.fc40              copr_base 118 k
 boost-random                ppc64le 1.81.0-6.fc40              copr_base  26 k
 boost-regex                 ppc64le 1.81.0-6.fc40              copr_base 123 k
 boost-serialization         ppc64le 1.81.0-6.fc40              copr_base 139 k
 boost-stacktrace            ppc64le 1.81.0-6.fc40              copr_base  32 k
 boost-system                ppc64le 1.81.0-6.fc40              copr_base  17 k
 boost-test                  ppc64le 1.81.0-6.fc40              copr_base 251 k
 boost-thread                ppc64le 1.81.0-6.fc40              copr_base  61 k
 boost-timer                 ppc64le 1.81.0-6.fc40              copr_base  44 k
 boost-type_erasure          ppc64le 1.81.0-6.fc40              copr_base  34 k
 boost-wave                  ppc64le 1.81.0-6.fc40              copr_base 239 k
 cmake-filesystem            ppc64le 3.27.4-8.fc40              fedora     19 k
 cpp                         ppc64le 13.2.1-1.fc39              fedora    9.8 M
 emacs-filesystem            noarch  1:29.1-1.fc39              fedora    8.4 k
 expat                       ppc64le 2.5.0-3.fc39               fedora    116 k
 flexiblas                   ppc64le 3.3.1-5.fc39               fedora     33 k
 flexiblas-netlib            ppc64le 3.3.1-5.fc39               fedora    2.8 M
 flexiblas-netlib64          ppc64le 3.3.1-5.fc39               fedora    2.7 M
 flexiblas-openblas-openmp   ppc64le 3.3.1-5.fc39               fedora     17 k
 flexiblas-openblas-openmp64 ppc64le 3.3.1-5.fc39               fedora     17 k
 gc                          ppc64le 8.2.2-4.fc39               fedora    122 k
 gcc                         ppc64le 13.2.1-1.fc39              fedora     31 M
 gcc-gfortran                ppc64le 13.2.1-1.fc39              fedora     11 M
 gcc-plugin-annobin          ppc64le 13.2.1-1.fc39              fedora     49 k
 glibc-devel                 ppc64le 2.38.9000-8.fc40           copr_base 515 k
 groff-base                  ppc64le 1.23.0-2.fc39              fedora    1.2 M
 gsl                         ppc64le 2.7.1-5.fc39               fedora    1.2 M
 guile22                     ppc64le 2.2.7-9.fc39               fedora    6.6 M
 hdf5                        ppc64le 1.12.1-12.fc39             fedora    2.3 M
 hdf5-devel                  ppc64le 1.12.1-12.fc39             fedora    1.3 M
 htslib                      ppc64le 1.15.1-3.fc40              copr_base 560 k
 kernel-headers              ppc64le 6.6.0-0.rc1.git0.1.fc40    fedora    1.5 M
 libaec                      ppc64le 1.0.6-5.fc39               fedora     45 k
 libaec-devel                ppc64le 1.0.6-5.fc39               fedora     12 k
 libasan                     ppc64le 13.2.1-1.fc39              fedora    493 k
 libatomic                   ppc64le 13.2.1-1.fc39              fedora     35 k
 libb2                       ppc64le 0.98.1-9.fc39              fedora     25 k
 libgfortran                 ppc64le 13.2.1-1.fc39              fedora    608 k
 libicu                      ppc64le 73.2-2.fc39                fedora     11 M
 libicu-devel                ppc64le 73.2-2.fc39                fedora    925 k
 libmpc                      ppc64le 1.3.1-3.fc39               fedora     95 k
 libquadmath                 ppc64le 13.2.1-1.fc39              fedora    210 k
 libquadmath-devel           ppc64le 13.2.1-1.fc39              fedora     36 k
 libstdc++-devel             ppc64le 13.2.1-1.fc39              fedora    2.6 M
 libtool-ltdl                ppc64le 2.4.7-8.fc40               fedora     40 k
 libubsan                    ppc64le 13.2.1-1.fc39              fedora    250 k
 libxcrypt-devel             ppc64le 4.4.36-2.fc39              fedora     30 k
 m4                          ppc64le 1.4.19-7.fc40              fedora    319 k
 metis                       ppc64le 5.1.0.3-2.fc39             fedora    599 k
 mpdecimal                   ppc64le 2.5.1-7.fc39               fedora    104 k
 ncurses                     ppc64le 6.4-7.20230520.fc40        fedora    424 k
 openblas                    ppc64le 0.3.21-6.fc39              fedora     35 k
 openblas-openmp             ppc64le 0.3.21-6.fc39              fedora    4.5 M
 openblas-openmp64           ppc64le 0.3.21-6.fc39              fedora    4.4 M
 perl-AutoLoader             noarch  5.74-500.fc39              fedora     21 k
 perl-B                      ppc64le 1.88-500.fc39              fedora    181 k
 perl-Carp                   noarch  1.54-500.fc39              fedora     29 k
 perl-Class-Struct           noarch  0.68-500.fc39              fedora     22 k
 perl-Data-Dumper            ppc64le 2.188-501.fc39             fedora     57 k
 perl-Digest                 noarch  1.20-500.fc39              fedora     25 k
 perl-Digest-MD5             ppc64le 2.58-500.fc39              fedora     36 k
 perl-DynaLoader             ppc64le 1.54-500.fc39              fedora     26 k
 perl-Encode                 ppc64le 4:3.19-500.fc39            fedora    1.7 M
 perl-Errno                  ppc64le 1.37-500.fc39              fedora     15 k
 perl-Exporter               noarch  5.77-500.fc39              fedora     31 k
 perl-Fcntl                  ppc64le 1.15-500.fc39              fedora     21 k
 perl-Fedora-VSP             noarch  0.001-32.fc39              fedora     23 k
 perl-File-Basename          noarch  2.86-500.fc39              fedora     17 k
 perl-File-Compare           noarch  1.100.700-500.fc39         fedora     13 k
 perl-File-Copy              noarch  2.41-500.fc39              fedora     20 k
 perl-File-Find              noarch  1.43-500.fc39              fedora     25 k
 perl-File-Path              noarch  2.18-500.fc39              fedora     35 k
 perl-File-Temp              noarch  1:0.231.100-500.fc39       fedora     58 k
 perl-File-stat              noarch  1.13-500.fc39              fedora     17 k
 perl-FileHandle             noarch  2.05-500.fc39              fedora     16 k
 perl-Getopt-Long            noarch  1:2.54-500.fc39            fedora     60 k
 perl-Getopt-Std             noarch  1.13-500.fc39              fedora     16 k
 perl-HTTP-Tiny              noarch  0.088-3.fc39               fedora     56 k
 perl-IO                     ppc64le 1.52-500.fc39              fedora     83 k
 perl-IO-Socket-IP           noarch  0.42-1.fc39                fedora     42 k
 perl-IO-Socket-SSL          noarch  2.083-3.fc39               fedora    225 k
 perl-IPC-Open3              noarch  1.22-500.fc39              fedora     22 k
 perl-MIME-Base64            ppc64le 3.16-500.fc39              fedora     30 k
 perl-Mozilla-CA             noarch  20230821-1.fc40            fedora     13 k
 perl-Net-SSLeay             ppc64le 1.92-10.fc39               fedora    367 k
 perl-POSIX                  ppc64le 2.13-500.fc39              fedora    117 k
 perl-PathTools              ppc64le 3.89-500.fc39              fedora     88 k
 perl-Pod-Escapes            noarch  1:1.07-501.fc40            fedora     19 k
 perl-Pod-Perldoc            noarch  3.28.01-501.fc39           fedora     86 k
 perl-Pod-Simple             noarch  1:3.45-4.fc39              fedora    218 k
 perl-Pod-Usage              noarch  4:2.03-500.fc39            fedora     39 k
 perl-Scalar-List-Utils      ppc64le 5:1.63-500.fc39            fedora     75 k
 perl-SelectSaver            noarch  1.02-500.fc39              fedora     12 k
 perl-Socket                 ppc64le 4:2.037-3.fc39             fedora     56 k
 perl-Storable               ppc64le 1:3.32-500.fc39            fedora    103 k
 perl-Symbol                 noarch  1.09-500.fc39              fedora     14 k
 perl-Term-ANSIColor         noarch  5.01-501.fc39              fedora     47 k
 perl-Term-Cap               noarch  1.18-500.fc39              fedora     22 k
 perl-Text-ParseWords        noarch  3.31-500.fc39              fedora     16 k
 perl-Text-Tabs+Wrap         noarch  2023.0511-3.fc39           fedora     22 k
 perl-Thread-Queue           noarch  3.14-501.fc40              fedora     21 k
 perl-Time-Local             noarch  2:1.350-3.fc39             fedora     34 k
 perl-URI                    noarch  5.21-1.fc40                fedora    125 k
 perl-base                   noarch  2.27-500.fc39              fedora     16 k
 perl-constant               noarch  1.33-501.fc39              fedora     22 k
 perl-if                     noarch  0.61.000-500.fc39          fedora     14 k
 perl-interpreter            ppc64le 4:5.38.0-500.fc39          fedora     72 k
 perl-libnet                 noarch  3.15-501.fc39              fedora    129 k
 perl-libs                   ppc64le 4:5.38.0-500.fc39          fedora    2.4 M
 perl-locale                 noarch  1.10-500.fc39              fedora     14 k
 perl-macros                 noarch  4:5.38.0-500.fc39          fedora     12 k
 perl-mro                    ppc64le 1.28-500.fc39              fedora     29 k
 perl-overload               noarch  1.37-500.fc39              fedora     46 k
 perl-overloading            noarch  0.02-500.fc39              fedora     13 k
 perl-parent                 noarch  1:0.241-500.fc39           fedora     14 k
 perl-podlators              noarch  1:5.01-500.fc39            fedora    125 k
 perl-threads                ppc64le 1:2.36-500.fc39            fedora     58 k
 perl-threads-shared         ppc64le 1.68-500.fc39              fedora     46 k
 perl-vars                   noarch  1.05-500.fc39              fedora     13 k
 python-pip-wheel            noarch  23.2.1-1.fc39              fedora    1.5 M
 python3                     ppc64le 3.12.0~rc2-1.fc40          fedora     26 k
 python3-libs                ppc64le 3.12.0~rc2-1.fc40          fedora    9.3 M
 python3-numpy               ppc64le 1:1.24.4-2.fc39            fedora    7.6 M

Transaction Summary
================================================================================
Install  160 Packages

Total download size: 158 M
Installed size: 718 M
Downloading Packages:
(1/160): boost-1.81.0-6.fc40.ppc64le.rpm        243 kB/s |  15 kB     00:00    
(2/160): boost-chrono-1.81.0-6.fc40.ppc64le.rpm 403 kB/s |  27 kB     00:00    
(3/160): boost-atomic-1.81.0-6.fc40.ppc64le.rpm 298 kB/s |  20 kB     00:00    
(4/160): boost-container-1.81.0-6.fc40.ppc64le. 5.9 MB/s |  43 kB     00:00    
(5/160): boost-context-1.81.0-6.fc40.ppc64le.rp 2.9 MB/s |  18 kB     00:00    
(6/160): boost-coroutine-1.81.0-6.fc40.ppc64le. 3.4 MB/s |  22 kB     00:00    
(7/160): boost-contract-1.81.0-6.fc40.ppc64le.r 4.6 MB/s |  47 kB     00:00    
(8/160): boost-date-time-1.81.0-6.fc40.ppc64le. 2.7 MB/s |  17 kB     00:00    
(9/160): boost-fiber-1.81.0-6.fc40.ppc64le.rpm  2.8 MB/s |  45 kB     00:00    
(10/160): boost-filesystem-1.81.0-6.fc40.ppc64l 4.2 MB/s |  70 kB     00:00    
(11/160): boost-graph-1.81.0-6.fc40.ppc64le.rpm  16 MB/s | 159 kB     00:00    
(12/160): boost-iostreams-1.81.0-6.fc40.ppc64le 4.2 MB/s |  42 kB     00:00    
(13/160): boost-json-1.81.0-6.fc40.ppc64le.rpm  9.0 MB/s | 116 kB     00:00    
(14/160): boost-locale-1.81.0-6.fc40.ppc64le.rp  17 MB/s | 245 kB     00:00    
(15/160): boost-log-1.81.0-6.fc40.ppc64le.rpm    33 MB/s | 522 kB     00:00    
(16/160): boost-math-1.81.0-6.fc40.ppc64le.rpm   17 MB/s | 308 kB     00:00    
(17/160): boost-devel-1.81.0-6.fc40.ppc64le.rpm  63 MB/s |  12 MB     00:00    
(18/160): boost-nowide-1.81.0-6.fc40.ppc64le.rp 275 kB/s |  22 kB     00:00    
(19/160): boost-numpy3-1.81.0-6.fc40.ppc64le.rp 376 kB/s |  31 kB     00:00    
(20/160): boost-program-options-1.81.0-6.fc40.p  14 MB/s | 117 kB     00:00    
(21/160): boost-python3-1.81.0-6.fc40.ppc64le.r  13 MB/s | 118 kB     00:00    
(22/160): boost-random-1.81.0-6.fc40.ppc64le.rp 2.7 MB/s |  26 kB     00:00    
(23/160): boost-regex-1.81.0-6.fc40.ppc64le.rpm  14 MB/s | 123 kB     00:00    
(24/160): boost-serialization-1.81.0-6.fc40.ppc  15 MB/s | 139 kB     00:00    
(25/160): boost-stacktrace-1.81.0-6.fc40.ppc64l 3.2 MB/s |  32 kB     00:00    
(26/160): boost-system-1.81.0-6.fc40.ppc64le.rp 3.1 MB/s |  17 kB     00:00    
(27/160): boost-thread-1.81.0-6.fc40.ppc64le.rp 8.5 MB/s |  61 kB     00:00    
(28/160): boost-test-1.81.0-6.fc40.ppc64le.rpm   24 MB/s | 251 kB     00:00    
(29/160): boost-timer-1.81.0-6.fc40.ppc64le.rpm 5.5 MB/s |  44 kB     00:00    
(30/160): boost-type_erasure-1.81.0-6.fc40.ppc6 5.5 MB/s |  34 kB     00:00    
(31/160): boost-wave-1.81.0-6.fc40.ppc64le.rpm   22 MB/s | 239 kB     00:00    
(32/160): glibc-devel-2.38.9000-8.fc40.ppc64le.  38 MB/s | 515 kB     00:00    
(33/160): zlib-ng-compat-devel-2.1.3-3.fc40.ppc 6.4 MB/s |  34 kB     00:00    
(34/160): htslib-devel-1.15.1-3.fc40.ppc64le.rp 223 kB/s | 100 kB     00:00    
(35/160): htslib-1.15.1-3.fc40.ppc64le.rpm      918 kB/s | 560 kB     00:00    
(36/160): SuperLU-6.0.0-1.fc39.ppc64le.rpm      333 kB/s | 205 kB     00:00    
(37/160): SuperLU-devel-6.0.0-1.fc39.ppc64le.rp 146 kB/s |  27 kB     00:00    
(38/160): armadillo-10.8.2-5.fc39.ppc64le.rpm   207 kB/s |  39 kB     00:00    
(39/160): annobin-docs-12.26-1.fc40.noarch.rpm  180 kB/s |  94 kB     00:00    
(40/160): annobin-plugin-gcc-12.26-1.fc40.ppc64 1.2 MB/s | 961 kB     00:00    
(41/160): arpack-3.8.0-7.fc39.ppc64le.rpm       537 kB/s | 185 kB     00:00    
(42/160): armadillo-devel-10.8.2-5.fc39.ppc64le 3.0 MB/s | 2.2 MB     00:00    
(43/160): arpack-devel-3.8.0-7.fc39.ppc64le.rpm  38 kB/s |  14 kB     00:00    
(44/160): autoconf-2.71-7.fc40.noarch.rpm       2.0 MB/s | 733 kB     00:00    
(45/160): cmake-filesystem-3.27.4-8.fc40.ppc64l 182 kB/s |  19 kB     00:00    
(46/160): emacs-filesystem-29.1-1.fc39.noarch.r  81 kB/s | 8.4 kB     00:00    
(47/160): automake-1.16.5-14.fc40.noarch.rpm    987 kB/s | 697 kB     00:00    
(48/160): expat-2.5.0-3.fc39.ppc64le.rpm        339 kB/s | 116 kB     00:00    
(49/160): flexiblas-3.3.1-5.fc39.ppc64le.rpm    317 kB/s |  33 kB     00:00    
(50/160): flexiblas-devel-3.3.1-5.fc39.ppc64le. 317 kB/s | 117 kB     00:00    
(51/160): flexiblas-netlib-3.3.1-5.fc39.ppc64le 6.1 MB/s | 2.8 MB     00:00    
(52/160): cpp-13.2.1-1.fc39.ppc64le.rpm         8.8 MB/s | 9.8 MB     00:01    
(53/160): flexiblas-openblas-openmp-3.3.1-5.fc3 122 kB/s |  17 kB     00:00    
(54/160): flexiblas-openblas-openmp64-3.3.1-5.f 166 kB/s |  17 kB     00:00    
(55/160): gc-8.2.2-4.fc39.ppc64le.rpm           214 kB/s | 122 kB     00:00    
(56/160): flexiblas-netlib64-3.3.1-5.fc39.ppc64 2.9 MB/s | 2.7 MB     00:00    
(57/160): gcc-gfortran-13.2.1-1.fc39.ppc64le.rp  13 MB/s |  11 MB     00:00    
(58/160): gcc-13.2.1-1.fc39.ppc64le.rpm          16 MB/s |  31 MB     00:01    
(59/160): gcc-c++-13.2.1-1.fc39.ppc64le.rpm     7.8 MB/s |  12 MB     00:01    
(60/160): gcc-plugin-annobin-13.2.1-1.fc39.ppc6  89 kB/s |  49 kB     00:00    
(61/160): groff-base-1.23.0-2.fc39.ppc64le.rpm  2.2 MB/s | 1.2 MB     00:00    
(62/160): gsl-devel-2.7.1-5.fc39.ppc64le.rpm    1.2 MB/s | 653 kB     00:00    
(63/160): gsl-2.7.1-5.fc39.ppc64le.rpm          1.9 MB/s | 1.2 MB     00:00    
(64/160): hdf5-1.12.1-12.fc39.ppc64le.rpm        10 MB/s | 2.3 MB     00:00    
(65/160): hdf5-devel-1.12.1-12.fc39.ppc64le.rpm 2.5 MB/s | 1.3 MB     00:00    
(66/160): libaec-1.0.6-5.fc39.ppc64le.rpm       447 kB/s |  45 kB     00:00    
(67/160): guile22-2.2.7-9.fc39.ppc64le.rpm      7.5 MB/s | 6.6 MB     00:00    
(68/160): kernel-headers-6.6.0-0.rc1.git0.1.fc4 2.3 MB/s | 1.5 MB     00:00    
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Total                                           8.6 MB/s | 158 MB     00:18     
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Installed:
  SuperLU-6.0.0-1.fc39.ppc64le                                                  
  SuperLU-devel-6.0.0-1.fc39.ppc64le                                            
  annobin-docs-12.26-1.fc40.noarch                                              
  annobin-plugin-gcc-12.26-1.fc40.ppc64le                                       
  armadillo-10.8.2-5.fc39.ppc64le                                               
  armadillo-devel-10.8.2-5.fc39.ppc64le                                         
  arpack-3.8.0-7.fc39.ppc64le                                                   
  arpack-devel-3.8.0-7.fc39.ppc64le                                             
  autoconf-2.71-7.fc40.noarch                                                   
  automake-1.16.5-14.fc40.noarch                                                
  boost-1.81.0-6.fc40.ppc64le                                                   
  boost-atomic-1.81.0-6.fc40.ppc64le                                            
  boost-chrono-1.81.0-6.fc40.ppc64le                                            
  boost-container-1.81.0-6.fc40.ppc64le                                         
  boost-context-1.81.0-6.fc40.ppc64le                                           
  boost-contract-1.81.0-6.fc40.ppc64le                                          
  boost-coroutine-1.81.0-6.fc40.ppc64le                                         
  boost-date-time-1.81.0-6.fc40.ppc64le                                         
  boost-devel-1.81.0-6.fc40.ppc64le                                             
  boost-fiber-1.81.0-6.fc40.ppc64le                                             
  boost-filesystem-1.81.0-6.fc40.ppc64le                                        
  boost-graph-1.81.0-6.fc40.ppc64le                                             
  boost-iostreams-1.81.0-6.fc40.ppc64le                                         
  boost-json-1.81.0-6.fc40.ppc64le                                              
  boost-locale-1.81.0-6.fc40.ppc64le                                            
  boost-log-1.81.0-6.fc40.ppc64le                                               
  boost-math-1.81.0-6.fc40.ppc64le                                              
  boost-nowide-1.81.0-6.fc40.ppc64le                                            
  boost-numpy3-1.81.0-6.fc40.ppc64le                                            
  boost-program-options-1.81.0-6.fc40.ppc64le                                   
  boost-python3-1.81.0-6.fc40.ppc64le                                           
  boost-random-1.81.0-6.fc40.ppc64le                                            
  boost-regex-1.81.0-6.fc40.ppc64le                                             
  boost-serialization-1.81.0-6.fc40.ppc64le                                     
  boost-stacktrace-1.81.0-6.fc40.ppc64le                                        
  boost-system-1.81.0-6.fc40.ppc64le                                            
  boost-test-1.81.0-6.fc40.ppc64le                                              
  boost-thread-1.81.0-6.fc40.ppc64le                                            
  boost-timer-1.81.0-6.fc40.ppc64le                                             
  boost-type_erasure-1.81.0-6.fc40.ppc64le                                      
  boost-wave-1.81.0-6.fc40.ppc64le                                              
  cmake-filesystem-3.27.4-8.fc40.ppc64le                                        
  cpp-13.2.1-1.fc39.ppc64le                                                     
  emacs-filesystem-1:29.1-1.fc39.noarch                                         
  expat-2.5.0-3.fc39.ppc64le                                                    
  flexiblas-3.3.1-5.fc39.ppc64le                                                
  flexiblas-devel-3.3.1-5.fc39.ppc64le                                          
  flexiblas-netlib-3.3.1-5.fc39.ppc64le                                         
  flexiblas-netlib64-3.3.1-5.fc39.ppc64le                                       
  flexiblas-openblas-openmp-3.3.1-5.fc39.ppc64le                                
  flexiblas-openblas-openmp64-3.3.1-5.fc39.ppc64le                              
  gc-8.2.2-4.fc39.ppc64le                                                       
  gcc-13.2.1-1.fc39.ppc64le                                                     
  gcc-c++-13.2.1-1.fc39.ppc64le                                                 
  gcc-gfortran-13.2.1-1.fc39.ppc64le                                            
  gcc-plugin-annobin-13.2.1-1.fc39.ppc64le                                      
  glibc-devel-2.38.9000-8.fc40.ppc64le                                          
  groff-base-1.23.0-2.fc39.ppc64le                                              
  gsl-2.7.1-5.fc39.ppc64le                                                      
  gsl-devel-2.7.1-5.fc39.ppc64le                                                
  guile22-2.2.7-9.fc39.ppc64le                                                  
  hdf5-1.12.1-12.fc39.ppc64le                                                   
  hdf5-devel-1.12.1-12.fc39.ppc64le                                             
  htslib-1.15.1-3.fc40.ppc64le                                                  
  htslib-devel-1.15.1-3.fc40.ppc64le                                            
  kernel-headers-6.6.0-0.rc1.git0.1.fc40.ppc64le                                
  libaec-1.0.6-5.fc39.ppc64le                                                   
  libaec-devel-1.0.6-5.fc39.ppc64le                                             
  libasan-13.2.1-1.fc39.ppc64le                                                 
  libatomic-13.2.1-1.fc39.ppc64le                                               
  libb2-0.98.1-9.fc39.ppc64le                                                   
  libgfortran-13.2.1-1.fc39.ppc64le                                             
  libicu-73.2-2.fc39.ppc64le                                                    
  libicu-devel-73.2-2.fc39.ppc64le                                              
  libmpc-1.3.1-3.fc39.ppc64le                                                   
  libquadmath-13.2.1-1.fc39.ppc64le                                             
  libquadmath-devel-13.2.1-1.fc39.ppc64le                                       
  libstdc++-devel-13.2.1-1.fc39.ppc64le                                         
  libtool-ltdl-2.4.7-8.fc40.ppc64le                                             
  libubsan-13.2.1-1.fc39.ppc64le                                                
  libxcrypt-devel-4.4.36-2.fc39.ppc64le                                         
  m4-1.4.19-7.fc40.ppc64le                                                      
  make-1:4.4.1-2.fc39.ppc64le                                                   
  metis-5.1.0.3-2.fc39.ppc64le                                                  
  mpdecimal-2.5.1-7.fc39.ppc64le                                                
  ncurses-6.4-7.20230520.fc40.ppc64le                                           
  openblas-0.3.21-6.fc39.ppc64le                                                
  openblas-openmp-0.3.21-6.fc39.ppc64le                                         
  openblas-openmp64-0.3.21-6.fc39.ppc64le                                       
  perl-AutoLoader-5.74-500.fc39.noarch                                          
  perl-B-1.88-500.fc39.ppc64le                                                  
  perl-Carp-1.54-500.fc39.noarch                                                
  perl-Class-Struct-0.68-500.fc39.noarch                                        
  perl-Data-Dumper-2.188-501.fc39.ppc64le                                       
  perl-Digest-1.20-500.fc39.noarch                                              
  perl-Digest-MD5-2.58-500.fc39.ppc64le                                         
  perl-DynaLoader-1.54-500.fc39.ppc64le                                         
  perl-Encode-4:3.19-500.fc39.ppc64le                                           
  perl-Errno-1.37-500.fc39.ppc64le                                              
  perl-Exporter-5.77-500.fc39.noarch                                            
  perl-Fcntl-1.15-500.fc39.ppc64le                                              
  perl-Fedora-VSP-0.001-32.fc39.noarch                                          
  perl-File-Basename-2.86-500.fc39.noarch                                       
  perl-File-Compare-1.100.700-500.fc39.noarch                                   
  perl-File-Copy-2.41-500.fc39.noarch                                           
  perl-File-Find-1.43-500.fc39.noarch                                           
  perl-File-Path-2.18-500.fc39.noarch                                           
  perl-File-Temp-1:0.231.100-500.fc39.noarch                                    
  perl-File-stat-1.13-500.fc39.noarch                                           
  perl-FileHandle-2.05-500.fc39.noarch                                          
  perl-Getopt-Long-1:2.54-500.fc39.noarch                                       
  perl-Getopt-Std-1.13-500.fc39.noarch                                          
  perl-HTTP-Tiny-0.088-3.fc39.noarch                                            
  perl-IO-1.52-500.fc39.ppc64le                                                 
  perl-IO-Socket-IP-0.42-1.fc39.noarch                                          
  perl-IO-Socket-SSL-2.083-3.fc39.noarch                                        
  perl-IPC-Open3-1.22-500.fc39.noarch                                           
  perl-MIME-Base64-3.16-500.fc39.ppc64le                                        
  perl-Mozilla-CA-20230821-1.fc40.noarch                                        
  perl-Net-SSLeay-1.92-10.fc39.ppc64le                                          
  perl-POSIX-2.13-500.fc39.ppc64le                                              
  perl-PathTools-3.89-500.fc39.ppc64le                                          
  perl-Pod-Escapes-1:1.07-501.fc40.noarch                                       
  perl-Pod-Perldoc-3.28.01-501.fc39.noarch                                      
  perl-Pod-Simple-1:3.45-4.fc39.noarch                                          
  perl-Pod-Usage-4:2.03-500.fc39.noarch                                         
  perl-Scalar-List-Utils-5:1.63-500.fc39.ppc64le                                
  perl-SelectSaver-1.02-500.fc39.noarch                                         
  perl-Socket-4:2.037-3.fc39.ppc64le                                            
  perl-Storable-1:3.32-500.fc39.ppc64le                                         
  perl-Symbol-1.09-500.fc39.noarch                                              
  perl-Term-ANSIColor-5.01-501.fc39.noarch                                      
  perl-Term-Cap-1.18-500.fc39.noarch                                            
  perl-Text-ParseWords-3.31-500.fc39.noarch                                     
  perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch                                   
  perl-Thread-Queue-3.14-501.fc40.noarch                                        
  perl-Time-Local-2:1.350-3.fc39.noarch                                         
  perl-URI-5.21-1.fc40.noarch                                                   
  perl-base-2.27-500.fc39.noarch                                                
  perl-constant-1.33-501.fc39.noarch                                            
  perl-generators-1.16-3.fc39.noarch                                            
  perl-if-0.61.000-500.fc39.noarch                                              
  perl-interpreter-4:5.38.0-500.fc39.ppc64le                                    
  perl-libnet-3.15-501.fc39.noarch                                              
  perl-libs-4:5.38.0-500.fc39.ppc64le                                           
  perl-locale-1.10-500.fc39.noarch                                              
  perl-macros-4:5.38.0-500.fc39.noarch                                          
  perl-mro-1.28-500.fc39.ppc64le                                                
  perl-overload-1.37-500.fc39.noarch                                            
  perl-overloading-0.02-500.fc39.noarch                                         
  perl-parent-1:0.241-500.fc39.noarch                                           
  perl-podlators-1:5.01-500.fc39.noarch                                         
  perl-threads-1:2.36-500.fc39.ppc64le                                          
  perl-threads-shared-1.68-500.fc39.ppc64le                                     
  perl-vars-1.05-500.fc39.noarch                                                
  python-pip-wheel-23.2.1-1.fc39.noarch                                         
  python3-3.12.0~rc2-1.fc40.ppc64le                                             
  python3-libs-3.12.0~rc2-1.fc40.ppc64le                                        
  python3-numpy-1:1.24.4-2.fc39.ppc64le                                         
  zlib-ng-compat-devel-2.1.3-3.fc40.ppc64le                                     

Complete!
Finish: build setup for mmseq-1.0.11-16.fc40.src.rpm
Start: rpmbuild mmseq-1.0.11-16.fc40.src.rpm
warning: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Building target platforms: ppc64le
Building for target ppc64le
setting SOURCE_DATE_EPOCH=1689811200
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.U2v0om
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf mmseq-1.0.11
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/1.0.11.zip
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd mmseq-1.0.11
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #2 (mmseq-zlib.patch):
+ echo 'Patch #2 (mmseq-zlib.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .mmseq-zlib.patch --fuzz=0
patching file src/Makefile
+ rm -f bin/offsetGTF-linux bin/postdiff-linux
+ sed -e s/-lblas/-lflexiblas/g -e s/-llapack/-lflexiblas/g -i src/Makefile
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.4Lfcml
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ cd src
+ make -j2 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection'
g++ -O3 -c sokal.cc
g++ -fopenmp -O3 -c uh.cpp 
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 hitsio.cpp hitsio.hpp -c hitsio.cpp
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection    -c -o fasta.o fasta.c
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -O3 offsetGTF.cpp -o ../bin/offsetGTF
offsetGTF.cpp: In function ‘int main(int, char**)’:
offsetGTF.cpp:115:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  115 |       while(gff_ind < gff_positions[chrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:117:57: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  117 |               pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:114:11: warning: unused variable ‘curoff’ [-Wunused-variable]
  114 |       int curoff=offset;
      |           ^~~~~~
offsetGTF.cpp:150:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  150 |       while(gff_ind < gff_positions[prevchrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:163:53: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  163 |           pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:177:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  177 |     while(gff_ind < gff_positions[chrom].size() && gff_positions[chrom][gff_ind] <= pos) {
      |           ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:235:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  235 |     for(int i=5; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
offsetGTF.cpp:237:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  237 |       if(i < tokens.size()-1) {
      |          ~~^~~~~~~~~~~~~~~~~
offsetGTF.cpp:108:7: warning: unused variable ‘gff_pos’ [-Wunused-variable]
  108 |   int gff_pos= -1;
      |       ^~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -O3 t2g_hits.cpp -o ../bin/t2g_hits
t2g_hits.cpp: In function ‘int main(int, char**)’:
t2g_hits.cpp:90:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   90 |         for(int i=2; i < tokens.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -DARMA_64BIT_WORD -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 uh.o sokal.o mmcollapse.cpp -o ../bin/mmcollapse -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmcollapse.cpp: In function ‘void get_unidentifiable_transcripts(std::string, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, bool>&)’:
mmcollapse.cpp:158:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  158 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:213:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  213 |     for(int i=0; i < tokens2.size(); i++) isIdent[tokens2[i]]=1;
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  259 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘void collapse(arma::cube&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<int, std::allocator<int> >)’:
mmcollapse.cpp:400:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  400 |   for(int s=0; s < R.n_slices; s++) {
      |                ~~^~~~~~~~~~~~
mmcollapse.cpp:401:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  401 |     for(int t=0; t < candidates.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:402:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  402 |       for(int j=1; j < indexes.size(); j++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:414:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  414 |     for(int j=1; j < indexes.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:417:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  417 |       for(int i=0; i < R.n_cols; i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:426:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  426 |   for(int i=0; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:431:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  431 |   for(int i=1; i < tset.size(); i++) {
      |                ~~^~~~~~~~~~~~~
mmcollapse.cpp:437:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  437 |   for(int i=1; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘std::map<int, int> join_traces(arma::mat&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >)’:
mmcollapse.cpp:445:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  445 |   for(int t=0; t < allnames.size(); t++) tmap[allnames[t]]=t;
      |                ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:452:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  452 |   for(int c=0; c < candidates.size(); c++) {
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:456:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  456 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:464:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  464 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:469:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  469 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:476:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  476 |   for(int i=0; i < toshed.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘void mean_corrs(const arma::cube&, const arma::umat&, arma::mat&, arma::mat&, std::vector<int, std::allocator<int> >, std::vector<int, std::allocator<int> >, double)’:
mmcollapse.cpp:486:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  486 |     for(int v= 0; v < R.n_rows; v++) {
      |                   ~~^~~~~~~~~~
mmcollapse.cpp:492:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare]
  492 |       for(int i=0; i < u.size(); i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp: In function ‘void get_corrs(arma::cube&, arma::mat&, const std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&)’:
mmcollapse.cpp:519:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  519 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:543:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  543 |         for(int t=0; t < tokens.size(); t++) {
      |                      ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘int main(int, char**)’:
mmcollapse.cpp:632:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  632 |   for(int i=1; i < basenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:691:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  691 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:707:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  707 |   for(int i=0; i < candidates.size(); i++) ts.push_back(i);
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:732:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  732 |     for(int i=0 ;i < maxcorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:738:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  738 |     for(int i=0 ;i < mincorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:802:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  802 |         for(int i=0 ;i < maxcorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:808:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  808 |         for(int i=0 ;i < mincorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:827:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  827 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:852:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  852 |       for(int t=0; t < tokens.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:882:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  882 |       for(int t=0; t < tokens2.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:934:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  934 |     for(int t=0; t < M.n_cols; t++) {
      |                  ~~^~~~~~~~~~
mmcollapse.cpp:963:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  963 |     for(int i=1; i < tokens2.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:976:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  976 |       if(MM.size1() < i+1 ) factor1=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:977:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  977 |       if(MM.size2() < j+1 ) factor2=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:1010:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1010 |     for(int t=0; t < ids.size(); t++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1083:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1083 |     for(int i=0; i < ids.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1092:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1092 |     for(int v = 0; v < M.n_cols; v++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:840:9: warning: unused variable ‘isident’ [-Wunused-variable]
  840 |     int isident=0;
      |         ^~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O2 bms.cpp bms.hpp -c bms.cpp
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 sokal.o uh.o hitsio.o mmseq.cpp -o ../bin/mmseq -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmseq.cpp: In function ‘std::vector<double> meanvar(std::vector<double>, double, double)’:
mmseq.cpp:130:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  130 |   for(int i=0;i < v.size(); i++) {
      |               ~~^~~~~~~~~~
mmseq.cpp: In function ‘int main(int, char**)’:
mmseq.cpp:244:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  244 |       for(int i=0; i < tokens.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~
mmseq.cpp:423:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  423 |       if(M.size1() < m ) factor1=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:424:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  424 |       if(M.size2() < n ) factor2=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:594:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  594 |   for(unsigned t=0; t < n; t++)  {
      |                     ~~^~~
mmseq.cpp:736:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  736 |     for(unsigned t=0; t < n; t++)
      |                       ~~^~~
mmseq.cpp:765:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  765 |       for(unsigned t=0; t < n; t++)
      |                         ~~^~~
mmseq.cpp:774:11: warning: unused variable ‘threadid’ [-Wunused-variable]
  774 |       int threadid=OMP_GET_THREAD_NUM;
      |           ^~~~~~~~
mmseq.cpp:829:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  829 |   for(unsigned t=0; t < n; t++)
      |                     ~~^~~
mmseq.cpp:912:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  912 |       for(unsigned t=0; t < n; t++) {
      |                         ~~^~~
mmseq.cpp:940:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  940 |   for(int i=0; i < identical_transcripts.size() * trace_length; i++) mu_trace_identical[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:961:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  961 |   for(int i=0; i < gene2transcripts.size() * trace_length; i++) mu_trace_gene[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1098:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1098 |   for(unsigned t=0; t < n; t++) gofs << indexSid[t] << " ";
      |                     ~~^~~
mmseq.cpp:1112:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1112 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1136:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1136 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1144:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1144 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1149:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1149 |   for(int i=0;i < identical_transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1156:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1156 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1161:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1161 |   for(int i=0;i < gene2transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1168:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1168 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1179:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1179 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1189:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1189 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1208:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1208 |     for(int t=0; t < identical_transcripts.size() ; t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1212:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1212 |     for(int t=0; t < gene2transcripts.size(); t++){
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1226:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1226 |   for(int i=0; i < identical_transcripts.size() ; i++) meanmu_identical[i] /= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1227:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1227 |   for(int i=0; i < gene2transcripts.size(); i++) meanmu_gene[i]/= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1330:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1330 |   for(int t=0; t < identical_transcripts.size(); t++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1349:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1349 |   for(int g=0; g < gene2transcripts.size(); g++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1473:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1473 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1475:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1475 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1482:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1482 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1484:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1484 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1506 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1508:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1508 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1514:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1514 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1516:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1516 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1536:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1536 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1538:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1538 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1544:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1544 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1546:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1546 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1560:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1560 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1562:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1562 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1582:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1582 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1584:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1584 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1599:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1599 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1601:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1601 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1619:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1619 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1621:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1621 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1644:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1644 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1646:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1646 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1656:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1656 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1658:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1658 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:308:8: warning: unused variable ‘buf16384’ [-Wunused-variable]
  308 |   char buf16384[16384];
      |        ^~~~~~~~
mmseq.cpp:391:8: warning: variable ‘doublehit’ set but not used [-Wunused-but-set-variable]
  391 |   bool doublehit;
      |        ^~~~~~~~~
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 fasta.o hitsio.o bam2hits.cpp -o ../bin/bam2hits -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
bam2hits.cpp: In function ‘void outputMergeHeaders(std::vector<FastaRecord>&, char, const char*, bool, HitsfileWriter&)’:
bam2hits.cpp:109:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  109 |   for(int i=0; i < sortedfastas.size()-1; i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:119:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  119 |       for(int j=0; j < curSet.size()-1; j++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  137 |   for(int j=0; j < curSet.size()-1; j++) {
      |                ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp: In function ‘std::vector<Alignment> repetitiveTranscriptFilter(std::vector<Alignment>&, int)’:
bam2hits.cpp:218:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Alignment>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  218 |   for(int j=0; j < alns.size(); j++) {
      |                ~~^~~~~~~~~~~~~
bam2hits.cpp:219:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  219 |     if(i < torem.size() && j==torem[i]) {
      |        ~~^~~~~~~~~~~~~~
bam2hits.cpp: In function ‘int main(int, char**)’:
bam2hits.cpp:518:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  518 |         if(_B != tg[0].size()-2) {
      |            ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:520:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  520 |           if(_A == tg[0].size()-2) {
      |              ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:522:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  522 |             if(_A != tg[1].size()-2) {
      |                ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:558:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  558 |       for(int i=1; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:609:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  609 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:645:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  645 |     for(int i=0;i < fastas.size(); i++) transcriptCounts[i] /= (double)fastas[i].seq().size();
      |                 ~~^~~~~~~~~~~~~~~
bam2hits.cpp:659:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  659 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:662:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  662 |         for(int j =0; j < fastas[i].seq().size(); j++) {
      |                       ~~^~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:663:44: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  663 |           int tag = (j <= MSEQ_BEFORE || j >= fastas[i].seq().size()-MSEQ_AFTER) ? -2 : 0;
      |                                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:791:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  791 |       for(int j=MSEQ_BEFORE + 1; j <= fastas[i].seq().length()-MSEQ_AFTER; j++) {
      |                                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:920:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  920 |     for(int j=1; j < frequencies.size()-WINDOWFORISIZEMODE + 1; j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:948:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  948 |     for(int i=0; i < testIsizes.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
bam2hits.cpp:959:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  959 |     for(int i=0; i < heights.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:997:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  997 |       for(int fl=1; fl <= (it->seq()).size(); fl++) {
      |                     ~~~^~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:1091:56: warning: comparing the result of pointer addition ‘(bam_aux_get(((const bam1_t*)line), ((const char*)"NM")) + ((sizetype)ait.__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >::operator->()->Alignment::NM()))’ and NULL [-Waddress]
 1091 |             ait->NM(ait->NM() + bam_aux_get(line,"NM") == NULL ? 0 : bam_aux2i(bam_aux_get(line,"NM")));
      |                                                        ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -O3 fasta.o extract_transcripts.cpp -o ../bin/extract_transcripts
extract_transcripts.cpp: In function ‘int main(int, char**)’:
extract_transcripts.cpp:122:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  122 |       for(int i=0; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
extract_transcripts.cpp:169:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  169 |     for(int i=0; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:195:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  195 |       for(int i=0; i < it->starts()->size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~
extract_transcripts.cpp:203:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  203 |       while(faline < stitch.size()) {
      |             ~~~~~~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:108:7: warning: unused variable ‘line’ [-Wunused-variable]
  108 |   int line=0;
      |       ^~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O3 hitsio.o hitstools.cpp -o ../bin/hitstools -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
hitstools.cpp: In function ‘void convert(char*, std::string)’:
hitstools.cpp:51:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   51 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp: In function ‘int main(int, char**)’:
hitstools.cpp:96:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   96 |                 for(int i = 0; i < transcriptName.size(); i++) {
      |                                ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp:136:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  136 |     for(int i = 0; i < transcriptName.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fopenmp -O2 bms.o mmdiff.cpp -o ../bin/mmdiff -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmdiff.cpp: In function ‘void parse_mmseq(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, int, int, double, bool)’:
mmdiff.cpp:100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  100 |   for(int i=0; i < filenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:111:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  111 |     for(int j=0; j < tokens.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp:138:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  138 |       if(k + 1 > features.size()) {
      |          ~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:147:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  147 |       if(k+1 > y.n_rows) {
      |          ~~~~^~~~~~~~~~
mmdiff.cpp:152:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  152 |       if(!useprops && tokens[lmg_ind]=="NA" || useprops && tokens[mp_ind]=="NA") {
      |          ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:173:62: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  173 |   if(range_start >=0 && range_end > range_start && range_end < y.n_rows) {
      |                                                    ~~~~~~~~~~^~~~~~~~~~
mmdiff.cpp:94:46: warning: variable ‘mcse_ind’ set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                              ^~~~~~~~
mmdiff.cpp:94:59: warning: variable ‘iact_ind’ set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                                           ^~~~~~~~
mmdiff.cpp: In function ‘void apply_normalisation(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, arma::Mat<double>&, arma::Mat<double>&, double)’:
mmdiff.cpp:212:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  212 |   for(int i=0; i < uh.n_rows; i++) {
      |                ~~^~~~~~~~~~~
mmdiff.cpp:214:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  214 |     for(int j=0; j < uh.n_cols; j++) {
      |                  ~~^~~~~~~~~~~
mmdiff.cpp:230:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  230 |   for(int i=0; i < use.size(); i++) {
      |                ~~^~~~~~~~~~~~
mmdiff.cpp:232:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  232 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp:239:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  239 |   for(int sample=0; sample < y.n_cols; sample++) {
      |                     ~~~~~~~^~~~~~~~~~
mmdiff.cpp:241:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  241 |     for(int i=0; i < use.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmdiff.cpp:246:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  246 |     for(int i=0; i < y.n_rows; i++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void apply_permutation(arma::Mat<double>&, arma::Mat<double>&)’:
mmdiff.cpp:257:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  257 |   for(int j=0; j< y.n_cols; j++) randinds.push_back(j);
      |                ~^~~~~~~~~~
mmdiff.cpp:258:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  258 |   for(int i=0; i < y.n_rows; i++) {
      |                ~~^~~~~~~~~~
mmdiff.cpp:260:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  260 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void parse_matrices(std::string, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<int>&, int)’:
mmdiff.cpp:310:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  310 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp: In function ‘int main(int, char**)’:
mmdiff.cpp:420:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  420 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:431:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  431 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:439:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  439 |       while(ss < arguments.size()) {
      |             ~~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:451:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  451 |       if(ss != arguments.size()) {
      |          ~~~^~~~~~~~~~~~~~~~~~~
mmdiff.cpp:578:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  578 |   for(int i=0; i < arguments.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:640:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  640 |     for(int i=0; i < simple_de.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:759:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  759 |     if(inburnin && iter == OUTLEN/10 || !inburnin && iter==tuneiters) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:764:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  764 |     for(int feature=0; feature < features.size(); feature++) {
      |                        ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:837:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  837 |     if(inburnin && iter % subsample_burnin ==0 || !inburnin && iter >= tuneiters && (iter - tuneiters) % subsample_iter == 0) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:886:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  886 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
mmdiff.cpp:898:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  898 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:902:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string<char>::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare]
  902 |       found2 = found2==string::npos ? -1 : found2;
      |                ~~~~~~^~~~~~~~~~~~~~
mmdiff.cpp:907:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  907 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:909:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  909 |     if(f < samplenames.size()-1) cout << "\t";
      |        ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:914:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  914 |   for(int feature=0; feature < features.size(); feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:926:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  926 |         for(int l=0; l < M.n_cols; l++) {
      |                      ~~^~~~~~~~~~
mmdiff.cpp:936:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  936 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:939:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  939 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:941:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  941 |       if(f < samplenames.size()-1) cout << "\t";
      |          ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:951:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  951 |       for(int feature=0; feature < features.size(); feature++) {
      |                          ~~~~~~~~^~~~~~~~~~~~~~~~~
/usr/bin/ld: /tmp/ccrbqDsd.ltrans1.ltrans.o: in function `main':
/builddir/build/BUILD/mmseq-1.0.11/src/bam2hits.cpp:653:(.text.startup+0x2a70): warning: the use of `tmpnam' is dangerous, better use `mkstemp'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.uLagy0
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.ppc64le '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.ppc64le
++ dirname /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.ppc64le
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.ppc64le
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ rm -rf /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.ppc64le
+ mkdir -p /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.ppc64le/usr/bin
+ install -p -m 0755 bin/bam2hits /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.ppc64le/usr/bin
+ install -p -m 0755 bin/extract_transcripts /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.ppc64le/usr/bin
+ install -p -m 0755 bin/hitstools /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.ppc64le/usr/bin
+ install -p -m 0755 bin/mmcollapse /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.ppc64le/usr/bin
+ install -p -m 0755 bin/mmdiff /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.ppc64le/usr/bin
+ install -p -m 0755 bin/mmseq /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.ppc64le/usr/bin
+ install -p -m 0755 bin/offsetGTF /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.ppc64le/usr/bin
+ install -p -m 0755 bin/t2g_hits /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.ppc64le/usr/bin
+ install -p -m 0755 bin/fastagrep.sh bin/mouse_strain_transcriptome.sh bin/usage.sh /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.ppc64le/usr/bin
find-debuginfo: starting
+ install -p -m 0755 bin/filterGTF.rb bin/haploref.rb bin/testregexp.rb /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.ppc64le/usr/bin
+ install -p -m 0755 bin/ensembl_gtf_to_gff.pl /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.ppc64le/usr/bin
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.0.11-16.fc40 --unique-debug-suffix -1.0.11-16.fc40.ppc64le --unique-debug-src-base mmseq-1.0.11-16.fc40.ppc64le --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/mmseq-1.0.11
Extracting debug info from 8 files
DWARF-compressing 8 files
sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/mmseq-1.0.11-16.fc40.ppc64le
542 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/ensembl_gtf_to_gff.pl from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/testregexp.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/haploref.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/filterGTF.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/usage.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/mouse_strain_transcriptome.sh from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/bin/fastagrep.sh from /bin/bash to #!/usr/bin/bash
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.Qx14C2
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
++ bin/mmseq --version
++ true
+ test mmseq-1.0.11 = mmseq-1.0.11
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: mmseq-1.0.11-16.fc40.ppc64le
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.m8gDLp
+ umask 022
+ cd /builddir/build/BUILD
+ cd mmseq-1.0.11
+ DOCDIR=/builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.ppc64le/usr/share/doc/mmseq
+ export LC_ALL=
+ LC_ALL=
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.ppc64le/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11/README.md /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.ppc64le/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11/COPYING /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.ppc64le/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11/doc /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.ppc64le/usr/share/doc/mmseq
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: mmseq = 1.0.11-16.fc40 mmseq(ppc-64) = 1.0.11-16.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/bash /usr/bin/perl /usr/bin/ruby /usr/bin/sh libboost_iostreams.so.1.81.0()(64bit) libboost_regex.so.1.81.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgsl.so.27()(64bit) libgslcblas.so.0()(64bit) libhts.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) perl(strict) rtld(GNU_HASH)
Processing files: mmseq-debugsource-1.0.11-16.fc40.ppc64le
Provides: mmseq-debugsource = 1.0.11-16.fc40 mmseq-debugsource(ppc-64) = 1.0.11-16.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: mmseq-debuginfo-1.0.11-16.fc40.ppc64le
Provides: debuginfo(build-id) = 16493c2cc8e773df97cb791d4a3d1342d6333a8d debuginfo(build-id) = 19465e025d960e8e58c30d6b2889de873962367b debuginfo(build-id) = 2d304290b31a34299f8f74ba05514e496e8fec58 debuginfo(build-id) = 318d976e0781e24ec91e814754bf8c6bd22beea2 debuginfo(build-id) = 464ccb5eb2b671e69b3e3f3e00b693b1e6215a11 debuginfo(build-id) = 968364cadb22f15f4b1f7e7bb351021bcd7a49a8 debuginfo(build-id) = d2e40be386a7bb915ab682bdbb35ab10ffb5ed5c debuginfo(build-id) = fdeae3ef832fdd5012efc4fc64274afd3773acbe mmseq-debuginfo = 1.0.11-16.fc40 mmseq-debuginfo(ppc-64) = 1.0.11-16.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: mmseq-debugsource(ppc-64) = 1.0.11-16.fc40
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.ppc64le
Wrote: /builddir/build/RPMS/mmseq-1.0.11-16.fc40.ppc64le.rpm
Wrote: /builddir/build/RPMS/mmseq-debugsource-1.0.11-16.fc40.ppc64le.rpm
Wrote: /builddir/build/RPMS/mmseq-debuginfo-1.0.11-16.fc40.ppc64le.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.q2NGzZ
+ umask 022
+ cd /builddir/build/BUILD
+ cd mmseq-1.0.11
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/mmseq-1.0.11-16.fc40.ppc64le
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.xHPKDE
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-SPECPARTS
+ rm -rf mmseq-1.0.11 mmseq-1.0.11.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0

RPM build warnings:
    %patchN is deprecated (1 usages found), use %patch N (or %patch -P N)
Finish: rpmbuild mmseq-1.0.11-16.fc40.src.rpm
Finish: build phase for mmseq-1.0.11-16.fc40.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-ppc64le-1695067711.503818/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-ppc64le-1695067711.503818/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-ppc64le-1695067711.503818/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-16.fc40.src.rpm) Config(child) 7 minutes 45 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "mmseq",
            "epoch": null,
            "version": "1.0.11",
            "release": "16.fc40",
            "arch": "src"
        },
        {
            "name": "mmseq-debuginfo",
            "epoch": null,
            "version": "1.0.11",
            "release": "16.fc40",
            "arch": "ppc64le"
        },
        {
            "name": "mmseq",
            "epoch": null,
            "version": "1.0.11",
            "release": "16.fc40",
            "arch": "ppc64le"
        },
        {
            "name": "mmseq-debugsource",
            "epoch": null,
            "version": "1.0.11",
            "release": "16.fc40",
            "arch": "ppc64le"
        }
    ]
}
RPMResults finished