Warning: Permanently added '165.192.143.137' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6407623-fedora-rawhide-s390x --chroot fedora-rawhide-s390x Version: 0.69 PID: 7728 Logging PID: 7729 Task: {'appstream': False, 'background': True, 'build_id': 6407623, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-s390x', 'enable_net': False, 'fedora_review': False, 'git_hash': '66ecc6b6ec787d3cef8feb18e4ab2410d31c665e', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/bfast', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'bfast', 'package_version': '0.7.0a-32', 'project_dirname': 'zlib-ng-compat-mpb', 'project_name': 'zlib-ng-compat-mpb', 'project_owner': 'tuliom', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/tuliom/zlib-ng-compat-mpb/fedora-rawhide-s390x/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'tuliom/zlib-ng-compat-mpb--tuliom', 'source_json': {}, 'source_type': None, 'submitter': 'tuliom', 'tags': [], 'task_id': '6407623-fedora-rawhide-s390x', 'timeout': 115200, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/bfast /var/lib/copr-rpmbuild/workspace/workdir-1l2qlyi8/bfast --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/bfast', '/var/lib/copr-rpmbuild/workspace/workdir-1l2qlyi8/bfast', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-1l2qlyi8/bfast'... Running: git checkout 66ecc6b6ec787d3cef8feb18e4ab2410d31c665e -- cmd: ['git', 'checkout', '66ecc6b6ec787d3cef8feb18e4ab2410d31c665e', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-1l2qlyi8/bfast rc: 0 stdout: stderr: Note: switching to '66ecc6b6ec787d3cef8feb18e4ab2410d31c665e'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 66ecc6b automatic import of bfast Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-1l2qlyi8/bfast rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading bfast-0.7.0a.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o bfast-0.7.0a.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/tuliom/zlib-ng-compat-mpb/bfast/bfast-0.7.0a.tar.gz/md5/9b0574dce903ab83e39e371b0a3bbbc6/bfast-0.7.0a.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 2399k 100 2399k 0 0 1436k 0 0:00:01 0:00:01 --:--:-- 1437k INFO: Reading stdout from command: md5sum bfast-0.7.0a.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-1l2qlyi8/bfast/bfast.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-1l2qlyi8/bfast --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1694931491.040946 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.1 starting (python version = 3.11.3, NVR = mock-5.1-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-1l2qlyi8/bfast/bfast.spec) Config(fedora-rawhide-s390x) Start: clean chroot Finish: clean chroot Mock Version: 5.1 INFO: Mock Version: 5.1 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1694931491.040946/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-s390x-bootstrap-1694931491.040946/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/cac244725a518b9acbc039b76a2ec354aa0d05d0840a8156679ea4a6e66b6bb9/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/cac244725a518b9acbc039b76a2ec354aa0d05d0840a8156679ea4a6e66b6bb9/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 997 kB/s | 246 kB 00:00 fedora 5.5 MB/s | 63 MB 00:11 Package python3-dnf-4.16.2-4.fc40.noarch is already installed. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: python3-dnf-plugins-core noarch 4.4.2-1.fc39 fedora 293 k Installing dependencies: dbus-libs s390x 1:1.14.10-1.fc40 fedora 159 k python3-dateutil noarch 1:2.8.2-10.fc39 fedora 355 k python3-dbus s390x 1.3.2-4.fc39 fedora 157 k python3-distro noarch 1.8.0-6.fc39 fedora 49 k python3-six noarch 1.16.0-12.fc39 fedora 41 k python3-systemd s390x 235-5.fc39 fedora 106 k Transaction Summary ================================================================================ Install 7 Packages Total download size: 1.1 M Installed size: 3.5 M Downloading Packages: (1/7): python3-dbus-1.3.2-4.fc39.s390x.rpm 215 kB/s | 157 kB 00:00 (2/7): python3-distro-1.8.0-6.fc39.noarch.rpm 333 kB/s | 49 kB 00:00 (3/7): dbus-libs-1.14.10-1.fc40.s390x.rpm 177 kB/s | 159 kB 00:00 (4/7): python3-six-1.16.0-12.fc39.noarch.rpm 274 kB/s | 41 kB 00:00 (5/7): python3-dateutil-2.8.2-10.fc39.noarch.rp 334 kB/s | 355 kB 00:01 (6/7): python3-dnf-plugins-core-4.4.2-1.fc39.no 1.0 MB/s | 293 kB 00:00 (7/7): python3-systemd-235-5.fc39.s390x.rpm 709 kB/s | 106 kB 00:00 -------------------------------------------------------------------------------- Total 740 kB/s | 1.1 MB 00:01 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python3-systemd-235-5.fc39.s390x 1/7 Installing : python3-six-1.16.0-12.fc39.noarch 2/7 Installing : python3-dateutil-1:2.8.2-10.fc39.noarch 3/7 Installing : python3-distro-1.8.0-6.fc39.noarch 4/7 Installing : dbus-libs-1:1.14.10-1.fc40.s390x 5/7 Installing : python3-dbus-1.3.2-4.fc39.s390x 6/7 Installing : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 7/7 Running scriptlet: python3-dnf-plugins-core-4.4.2-1.fc39.noarch 7/7 Verifying : dbus-libs-1:1.14.10-1.fc40.s390x 1/7 Verifying : python3-dateutil-1:2.8.2-10.fc39.noarch 2/7 Verifying : python3-dbus-1.3.2-4.fc39.s390x 3/7 Verifying : python3-distro-1.8.0-6.fc39.noarch 4/7 Verifying : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 5/7 Verifying : python3-six-1.16.0-12.fc39.noarch 6/7 Verifying : python3-systemd-235-5.fc39.s390x 7/7 Installed: dbus-libs-1:1.14.10-1.fc40.s390x python3-dateutil-1:2.8.2-10.fc39.noarch python3-dbus-1.3.2-4.fc39.s390x python3-distro-1.8.0-6.fc39.noarch python3-dnf-plugins-core-4.4.2-1.fc39.noarch python3-six-1.16.0-12.fc39.noarch python3-systemd-235-5.fc39.s390x Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1694931491.040946/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 7.8 kB/s | 1.5 kB 00:00 Copr repository 45 kB/s | 248 kB 00:05 fedora 7.1 kB/s | 5.5 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash s390x 5.2.15-5.fc39 fedora 1.8 M bzip2 s390x 1.0.8-16.fc39 fedora 53 k coreutils s390x 9.4-1.fc40 fedora 1.2 M cpio s390x 2.14-4.fc39 fedora 283 k diffutils s390x 3.10-3.fc39 fedora 407 k fedora-release-common noarch 40-0.7 fedora 18 k findutils s390x 1:4.9.0-6.fc40 fedora 497 k gawk s390x 5.2.2-2.fc39 fedora 1.1 M glibc-minimal-langpack s390x 2.38.9000-8.fc40 fedora 73 k grep s390x 3.11-5.fc40 fedora 305 k gzip s390x 1.12-6.fc39 fedora 173 k info s390x 7.0.3-3.fc39 fedora 192 k patch s390x 2.7.6-22.fc39 fedora 134 k redhat-rpm-config noarch 270-1.fc40 copr_base 74 k rpm-build s390x 4.18.99-1.fc40 fedora 78 k sed s390x 4.8-14.fc39 fedora 309 k shadow-utils s390x 2:4.14.0-1.fc40 fedora 1.3 M tar s390x 2:1.35-2.fc40 fedora 874 k unzip s390x 6.0-62.fc39 fedora 194 k util-linux s390x 2.39.2-1.fc40 fedora 1.1 M which s390x 2.21-40.fc39 fedora 43 k xz s390x 5.4.4-1.fc39 fedora 557 k Installing dependencies: alternatives s390x 1.25-1.fc39 fedora 39 k ansible-srpm-macros noarch 1-11.fc39 fedora 21 k audit-libs s390x 3.1.2-4.fc40 fedora 121 k authselect s390x 1.4.2-3.fc39 fedora 144 k authselect-libs s390x 1.4.2-3.fc39 fedora 247 k basesystem noarch 11-18.fc39 fedora 7.2 k binutils s390x 2.41-5.fc40 fedora 5.9 M binutils-gold s390x 2.41-5.fc40 fedora 993 k bzip2-libs s390x 1.0.8-16.fc39 fedora 46 k ca-certificates noarch 2023.2.60_v7.0.306-3.fc40 fedora 837 k coreutils-common s390x 9.4-1.fc40 fedora 2.1 M cracklib s390x 2.9.11-2.fc39 fedora 94 k crypto-policies noarch 20230731-1.git5ed06e0.fc39 fedora 99 k curl s390x 8.3.0-1.fc40 fedora 353 k cyrus-sasl-lib s390x 2.1.28-11.fc39 fedora 819 k debugedit s390x 5.0-10.fc39 fedora 81 k dwz s390x 0.15-3.fc39 fedora 144 k ed s390x 1.19-4.fc39 fedora 80 k efi-srpm-macros noarch 5-9.fc39 fedora 22 k elfutils s390x 0.189-6.fc40 fedora 560 k elfutils-debuginfod-client s390x 0.189-6.fc40 fedora 38 k elfutils-default-yama-scope noarch 0.189-6.fc40 fedora 13 k elfutils-libelf s390x 0.189-6.fc40 fedora 200 k elfutils-libs s390x 0.189-6.fc40 fedora 275 k fedora-gpg-keys noarch 40-0.1 fedora 130 k fedora-release noarch 40-0.7 fedora 8.0 k fedora-release-identity-basic noarch 40-0.7 fedora 8.8 k fedora-repos noarch 40-0.1 fedora 9.4 k fedora-repos-rawhide noarch 40-0.1 fedora 9.0 k file s390x 5.45-1.fc40 fedora 49 k file-libs s390x 5.45-1.fc40 fedora 769 k filesystem s390x 3.18-6.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 26 k forge-srpm-macros noarch 0.1.0-1.fc40 fedora 18 k fpc-srpm-macros noarch 1.3-8.fc39 fedora 7.4 k gdb-minimal s390x 13.2-8.fc40 fedora 4.0 M gdbm-libs s390x 1:1.23-4.fc39 fedora 58 k ghc-srpm-macros noarch 1.6.1-2.fc39 fedora 7.8 k glibc s390x 2.38.9000-8.fc40 fedora 1.8 M glibc-common s390x 2.38.9000-8.fc40 fedora 373 k glibc-gconv-extra s390x 2.38.9000-8.fc40 fedora 1.7 M gmp s390x 1:6.2.1-5.fc39 fedora 325 k gnat-srpm-macros noarch 6-3.fc39 fedora 8.8 k go-srpm-macros noarch 3.2.0-7.fc40 fedora 27 k jansson s390x 2.13.1-7.fc39 fedora 44 k kernel-srpm-macros noarch 1.0-20.fc39 fedora 10 k keyutils-libs s390x 1.6.1-7.fc39 fedora 31 k krb5-libs s390x 1.21.2-1.fc40 fedora 780 k libacl s390x 2.3.1-9.fc40 fedora 24 k libarchive s390x 3.7.2-1.fc40 fedora 440 k libattr s390x 2.5.1-9.fc40 fedora 18 k libblkid s390x 2.39.2-1.fc40 fedora 120 k libbrotli s390x 1.1.0-1.fc40 fedora 379 k libcap s390x 2.48-7.fc39 fedora 69 k libcap-ng s390x 0.8.3-8.fc40 fedora 32 k libcom_err s390x 1.47.0-2.fc39 fedora 26 k libcurl s390x 8.3.0-1.fc40 fedora 361 k libdb s390x 5.3.28-58.fc40 fedora 774 k libeconf s390x 0.5.2-1.fc40 fedora 32 k libevent s390x 2.1.12-9.fc39 fedora 260 k libfdisk s390x 2.39.2-1.fc40 fedora 165 k libffi s390x 3.4.4-4.fc39 fedora 36 k libgcc s390x 13.2.1-1.fc40 copr_base 82 k libgomp s390x 13.2.1-1.fc40 copr_base 323 k libidn2 s390x 2.3.4-3.fc39 fedora 118 k libmount s390x 2.39.2-1.fc40 fedora 158 k libnghttp2 s390x 1.56.0-1.fc40 fedora 78 k libnsl2 s390x 2.0.0-6.fc39 fedora 30 k libpkgconf s390x 1.9.5-2.fc39 fedora 38 k libpsl s390x 0.21.2-4.fc39 fedora 63 k libpwquality s390x 1.4.5-6.fc39 fedora 121 k libselinux s390x 3.5-5.fc39 fedora 91 k libsemanage s390x 3.5-4.fc39 fedora 122 k libsepol s390x 3.5-2.fc39 fedora 330 k libsigsegv s390x 2.14-5.fc39 fedora 27 k libsmartcols s390x 2.39.2-1.fc40 fedora 70 k libssh s390x 0.10.5-2.fc39 fedora 209 k libssh-config noarch 0.10.5-2.fc39 fedora 9.2 k libstdc++ s390x 13.2.1-1.fc40 copr_base 949 k libtasn1 s390x 4.19.0-3.fc39 fedora 77 k libtirpc s390x 1.3.3-1.rc2.fc39 fedora 95 k libunistring s390x 1.1-5.fc40 fedora 556 k libutempter s390x 1.2.1-10.fc39 fedora 26 k libuuid s390x 2.39.2-1.fc40 fedora 28 k libverto s390x 0.3.2-6.fc39 fedora 21 k libxcrypt s390x 4.4.36-2.fc39 fedora 124 k libxml2 s390x 2.11.5-1.fc40 fedora 711 k libzstd s390x 1.5.5-4.fc39 fedora 342 k lua-libs s390x 5.4.6-3.fc39 fedora 142 k lua-srpm-macros noarch 1-9.fc39 fedora 8.6 k lz4-libs s390x 1.9.4-4.fc39 fedora 81 k mpfr s390x 4.2.0-3.fc39 fedora 298 k ncurses-base noarch 6.4-7.20230520.fc40 fedora 88 k ncurses-libs s390x 6.4-7.20230520.fc40 fedora 361 k ocaml-srpm-macros noarch 8-2.fc39 fedora 14 k openblas-srpm-macros noarch 2-14.fc39 fedora 7.5 k openldap s390x 2.6.6-1.fc39 fedora 262 k openssl-libs s390x 1:3.1.1-4.fc40 fedora 1.9 M p11-kit s390x 0.25.0-2.fc39 fedora 507 k p11-kit-trust s390x 0.25.0-2.fc39 fedora 141 k package-notes-srpm-macros noarch 0.5-9.fc39 fedora 11 k pam s390x 1.5.3-2.fc39 fedora 558 k pam-libs s390x 1.5.3-2.fc39 fedora 59 k pcre2 s390x 10.42-1.fc39.2 fedora 250 k pcre2-syntax noarch 10.42-1.fc39.2 fedora 143 k perl-srpm-macros noarch 1-51.fc39 fedora 8.0 k pkgconf s390x 1.9.5-2.fc39 fedora 43 k pkgconf-m4 noarch 1.9.5-2.fc39 fedora 14 k pkgconf-pkg-config s390x 1.9.5-2.fc39 fedora 9.6 k popt s390x 1.19-3.fc39 fedora 69 k publicsuffix-list-dafsa noarch 20230812-1.fc40 fedora 57 k pyproject-srpm-macros noarch 1.9.0-2.fc39 fedora 14 k python-srpm-macros noarch 3.12-4.fc40 fedora 25 k qt5-srpm-macros noarch 5.15.10-2.fc39 fedora 8.3 k qt6-srpm-macros noarch 6.5.2-2.fc39 fedora 9.2 k readline s390x 8.2-4.fc39 fedora 229 k rpm s390x 4.18.99-1.fc40 fedora 538 k rpm-build-libs s390x 4.18.99-1.fc40 fedora 97 k rpm-libs s390x 4.18.99-1.fc40 fedora 323 k rpm-sequoia s390x 1.5.0-1.fc40 fedora 1.0 M rust-srpm-macros noarch 24-5.fc40 fedora 12 k setup noarch 2.14.4-1.fc39 fedora 154 k sqlite-libs s390x 3.43.1-1.fc40 fedora 737 k systemd-libs s390x 254.1-2.fc40 fedora 696 k tzdata noarch 2023c-3.fc40 fedora 718 k util-linux-core s390x 2.39.2-1.fc40 fedora 496 k xxhash-libs s390x 0.8.2-1.fc39 fedora 37 k xz-libs s390x 5.4.4-1.fc39 fedora 114 k zip s390x 3.0-38.fc39 fedora 283 k zlib-ng-compat s390x 2.1.3-3.fc40 copr_base 71 k zstd s390x 1.5.5-4.fc39 fedora 506 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 153 Packages Total size: 53 M Installed size: 181 M Downloading Packages: [SKIPPED] libgcc-13.2.1-1.fc40.s390x.rpm: Already downloaded [SKIPPED] libgomp-13.2.1-1.fc40.s390x.rpm: Already downloaded [SKIPPED] libstdc++-13.2.1-1.fc40.s390x.rpm: Already downloaded [SKIPPED] redhat-rpm-config-270-1.fc40.noarch.rpm: Already downloaded [SKIPPED] zlib-ng-compat-2.1.3-3.fc40.s390x.rpm: Already downloaded [SKIPPED] alternatives-1.25-1.fc39.s390x.rpm: Already downloaded [SKIPPED] ansible-srpm-macros-1-11.fc39.noarch.rpm: Already downloaded [SKIPPED] audit-libs-3.1.2-4.fc40.s390x.rpm: Already downloaded [SKIPPED] authselect-1.4.2-3.fc39.s390x.rpm: Already downloaded [SKIPPED] authselect-libs-1.4.2-3.fc39.s390x.rpm: Already downloaded [SKIPPED] basesystem-11-18.fc39.noarch.rpm: Already downloaded [SKIPPED] bash-5.2.15-5.fc39.s390x.rpm: Already downloaded [SKIPPED] binutils-2.41-5.fc40.s390x.rpm: Already downloaded [SKIPPED] binutils-gold-2.41-5.fc40.s390x.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-16.fc39.s390x.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-16.fc39.s390x.rpm: Already downloaded [SKIPPED] ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch.rpm: Already downloaded [SKIPPED] coreutils-9.4-1.fc40.s390x.rpm: Already downloaded [SKIPPED] coreutils-common-9.4-1.fc40.s390x.rpm: Already downloaded [SKIPPED] cpio-2.14-4.fc39.s390x.rpm: Already downloaded [SKIPPED] cracklib-2.9.11-2.fc39.s390x.rpm: Already downloaded [SKIPPED] crypto-policies-20230731-1.git5ed06e0.fc39.noarch.rpm: Already downloaded [SKIPPED] curl-8.3.0-1.fc40.s390x.rpm: Already downloaded [SKIPPED] cyrus-sasl-lib-2.1.28-11.fc39.s390x.rpm: Already downloaded [SKIPPED] debugedit-5.0-10.fc39.s390x.rpm: Already downloaded [SKIPPED] diffutils-3.10-3.fc39.s390x.rpm: Already downloaded [SKIPPED] dwz-0.15-3.fc39.s390x.rpm: Already downloaded [SKIPPED] ed-1.19-4.fc39.s390x.rpm: Already downloaded [SKIPPED] efi-srpm-macros-5-9.fc39.noarch.rpm: Already downloaded [SKIPPED] elfutils-0.189-6.fc40.s390x.rpm: Already downloaded [SKIPPED] elfutils-debuginfod-client-0.189-6.fc40.s390x.rpm: Already downloaded [SKIPPED] elfutils-default-yama-scope-0.189-6.fc40.noarch.rpm: Already downloaded [SKIPPED] elfutils-libelf-0.189-6.fc40.s390x.rpm: Already downloaded [SKIPPED] elfutils-libs-0.189-6.fc40.s390x.rpm: Already downloaded [SKIPPED] fedora-gpg-keys-40-0.1.noarch.rpm: Already downloaded [SKIPPED] fedora-release-40-0.7.noarch.rpm: Already downloaded [SKIPPED] fedora-release-common-40-0.7.noarch.rpm: Already downloaded [SKIPPED] fedora-release-identity-basic-40-0.7.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-40-0.1.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-rawhide-40-0.1.noarch.rpm: Already downloaded [SKIPPED] file-5.45-1.fc40.s390x.rpm: Already downloaded [SKIPPED] file-libs-5.45-1.fc40.s390x.rpm: Already downloaded [SKIPPED] filesystem-3.18-6.fc39.s390x.rpm: Already downloaded [SKIPPED] findutils-4.9.0-6.fc40.s390x.rpm: Already downloaded [SKIPPED] fonts-srpm-macros-2.0.5-12.fc39.noarch.rpm: Already downloaded [SKIPPED] forge-srpm-macros-0.1.0-1.fc40.noarch.rpm: Already downloaded [SKIPPED] fpc-srpm-macros-1.3-8.fc39.noarch.rpm: Already downloaded [SKIPPED] gawk-5.2.2-2.fc39.s390x.rpm: Already downloaded [SKIPPED] gdb-minimal-13.2-8.fc40.s390x.rpm: Already downloaded [SKIPPED] 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00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary (0xA15B79CC) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. 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authselect-libs-1.4.2-3.fc39.s390x 118/153 Installing : gzip-1.12-6.fc39.s390x 119/153 Installing : cracklib-2.9.11-2.fc39.s390x 120/153 Installing : libpwquality-1.4.5-6.fc39.s390x 121/153 Installing : authselect-1.4.2-3.fc39.s390x 122/153 Installing : libnsl2-2.0.0-6.fc39.s390x 123/153 Installing : pam-1.5.3-2.fc39.s390x 124/153 Installing : libssh-0.10.5-2.fc39.s390x 125/153 Installing : libarchive-3.7.2-1.fc40.s390x 126/153 Installing : libevent-2.1.12-9.fc39.s390x 127/153 Installing : openldap-2.6.6-1.fc39.s390x 128/153 Installing : libcurl-8.3.0-1.fc40.s390x 129/153 Installing : elfutils-libs-0.189-6.fc40.s390x 130/153 Installing : elfutils-debuginfod-client-0.189-6.fc40.s390x 131/153 Installing : binutils-gold-2.41-5.fc40.s390x 132/153 Running scriptlet: binutils-gold-2.41-5.fc40.s390x 132/153 Installing : binutils-2.41-5.fc40.s390x 133/153 Running scriptlet: binutils-2.41-5.fc40.s390x 133/153 Installing : elfutils-0.189-6.fc40.s390x 134/153 Installing : gdb-minimal-13.2-8.fc40.s390x 135/153 Installing : debugedit-5.0-10.fc39.s390x 136/153 Installing : curl-8.3.0-1.fc40.s390x 137/153 Installing : rpm-sequoia-1.5.0-1.fc40.s390x 138/153 Installing : rpm-libs-4.18.99-1.fc40.s390x 139/153 Running scriptlet: rpm-4.18.99-1.fc40.s390x 140/153 Installing : rpm-4.18.99-1.fc40.s390x 140/153 Installing : efi-srpm-macros-5-9.fc39.noarch 141/153 Installing : lua-srpm-macros-1-9.fc39.noarch 142/153 Installing : rpm-build-libs-4.18.99-1.fc40.s390x 143/153 Installing : ansible-srpm-macros-1-11.fc39.noarch 144/153 Installing : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 145/153 Installing : forge-srpm-macros-0.1.0-1.fc40.noarch 146/153 Installing : go-srpm-macros-3.2.0-7.fc40.noarch 147/153 Installing : python-srpm-macros-3.12-4.fc40.noarch 148/153 Installing : redhat-rpm-config-270-1.fc40.noarch 149/153 Installing : rpm-build-4.18.99-1.fc40.s390x 150/153 Installing : util-linux-2.39.2-1.fc40.s390x 151/153 Installing : which-2.21-40.fc39.s390x 152/153 Installing : info-7.0.3-3.fc39.s390x 153/153 Running scriptlet: filesystem-3.18-6.fc39.s390x 153/153 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 153/153 Running scriptlet: authselect-libs-1.4.2-3.fc39.s390x 153/153 Running scriptlet: rpm-4.18.99-1.fc40.s390x 153/153 Running scriptlet: info-7.0.3-3.fc39.s390x 153/153 Verifying : libgcc-13.2.1-1.fc40.s390x 1/153 Verifying : libgomp-13.2.1-1.fc40.s390x 2/153 Verifying : libstdc++-13.2.1-1.fc40.s390x 3/153 Verifying : redhat-rpm-config-270-1.fc40.noarch 4/153 Verifying : zlib-ng-compat-2.1.3-3.fc40.s390x 5/153 Verifying : alternatives-1.25-1.fc39.s390x 6/153 Verifying : ansible-srpm-macros-1-11.fc39.noarch 7/153 Verifying : audit-libs-3.1.2-4.fc40.s390x 8/153 Verifying : authselect-1.4.2-3.fc39.s390x 9/153 Verifying : authselect-libs-1.4.2-3.fc39.s390x 10/153 Verifying : basesystem-11-18.fc39.noarch 11/153 Verifying : bash-5.2.15-5.fc39.s390x 12/153 Verifying : binutils-2.41-5.fc40.s390x 13/153 Verifying : binutils-gold-2.41-5.fc40.s390x 14/153 Verifying : bzip2-1.0.8-16.fc39.s390x 15/153 Verifying : bzip2-libs-1.0.8-16.fc39.s390x 16/153 Verifying : ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 17/153 Verifying : coreutils-9.4-1.fc40.s390x 18/153 Verifying : coreutils-common-9.4-1.fc40.s390x 19/153 Verifying : cpio-2.14-4.fc39.s390x 20/153 Verifying : cracklib-2.9.11-2.fc39.s390x 21/153 Verifying : crypto-policies-20230731-1.git5ed06e0.fc39.noarc 22/153 Verifying : curl-8.3.0-1.fc40.s390x 23/153 Verifying : cyrus-sasl-lib-2.1.28-11.fc39.s390x 24/153 Verifying : debugedit-5.0-10.fc39.s390x 25/153 Verifying : diffutils-3.10-3.fc39.s390x 26/153 Verifying : dwz-0.15-3.fc39.s390x 27/153 Verifying : ed-1.19-4.fc39.s390x 28/153 Verifying : efi-srpm-macros-5-9.fc39.noarch 29/153 Verifying : elfutils-0.189-6.fc40.s390x 30/153 Verifying : elfutils-debuginfod-client-0.189-6.fc40.s390x 31/153 Verifying : elfutils-default-yama-scope-0.189-6.fc40.noarch 32/153 Verifying : elfutils-libelf-0.189-6.fc40.s390x 33/153 Verifying : elfutils-libs-0.189-6.fc40.s390x 34/153 Verifying : fedora-gpg-keys-40-0.1.noarch 35/153 Verifying : fedora-release-40-0.7.noarch 36/153 Verifying : fedora-release-common-40-0.7.noarch 37/153 Verifying : fedora-release-identity-basic-40-0.7.noarch 38/153 Verifying : fedora-repos-40-0.1.noarch 39/153 Verifying : fedora-repos-rawhide-40-0.1.noarch 40/153 Verifying : file-5.45-1.fc40.s390x 41/153 Verifying : file-libs-5.45-1.fc40.s390x 42/153 Verifying : filesystem-3.18-6.fc39.s390x 43/153 Verifying : findutils-1:4.9.0-6.fc40.s390x 44/153 Verifying : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 45/153 Verifying : forge-srpm-macros-0.1.0-1.fc40.noarch 46/153 Verifying : fpc-srpm-macros-1.3-8.fc39.noarch 47/153 Verifying : gawk-5.2.2-2.fc39.s390x 48/153 Verifying : gdb-minimal-13.2-8.fc40.s390x 49/153 Verifying : gdbm-libs-1:1.23-4.fc39.s390x 50/153 Verifying : ghc-srpm-macros-1.6.1-2.fc39.noarch 51/153 Verifying : glibc-2.38.9000-8.fc40.s390x 52/153 Verifying : glibc-common-2.38.9000-8.fc40.s390x 53/153 Verifying : glibc-gconv-extra-2.38.9000-8.fc40.s390x 54/153 Verifying : glibc-minimal-langpack-2.38.9000-8.fc40.s390x 55/153 Verifying : gmp-1:6.2.1-5.fc39.s390x 56/153 Verifying : gnat-srpm-macros-6-3.fc39.noarch 57/153 Verifying : go-srpm-macros-3.2.0-7.fc40.noarch 58/153 Verifying : grep-3.11-5.fc40.s390x 59/153 Verifying : gzip-1.12-6.fc39.s390x 60/153 Verifying : info-7.0.3-3.fc39.s390x 61/153 Verifying : jansson-2.13.1-7.fc39.s390x 62/153 Verifying : kernel-srpm-macros-1.0-20.fc39.noarch 63/153 Verifying : keyutils-libs-1.6.1-7.fc39.s390x 64/153 Verifying : krb5-libs-1.21.2-1.fc40.s390x 65/153 Verifying : libacl-2.3.1-9.fc40.s390x 66/153 Verifying : libarchive-3.7.2-1.fc40.s390x 67/153 Verifying : libattr-2.5.1-9.fc40.s390x 68/153 Verifying : libblkid-2.39.2-1.fc40.s390x 69/153 Verifying : libbrotli-1.1.0-1.fc40.s390x 70/153 Verifying : libcap-2.48-7.fc39.s390x 71/153 Verifying : libcap-ng-0.8.3-8.fc40.s390x 72/153 Verifying : libcom_err-1.47.0-2.fc39.s390x 73/153 Verifying : libcurl-8.3.0-1.fc40.s390x 74/153 Verifying : libdb-5.3.28-58.fc40.s390x 75/153 Verifying : libeconf-0.5.2-1.fc40.s390x 76/153 Verifying : libevent-2.1.12-9.fc39.s390x 77/153 Verifying : libfdisk-2.39.2-1.fc40.s390x 78/153 Verifying : libffi-3.4.4-4.fc39.s390x 79/153 Verifying : libidn2-2.3.4-3.fc39.s390x 80/153 Verifying : libmount-2.39.2-1.fc40.s390x 81/153 Verifying : libnghttp2-1.56.0-1.fc40.s390x 82/153 Verifying : libnsl2-2.0.0-6.fc39.s390x 83/153 Verifying : libpkgconf-1.9.5-2.fc39.s390x 84/153 Verifying : libpsl-0.21.2-4.fc39.s390x 85/153 Verifying : libpwquality-1.4.5-6.fc39.s390x 86/153 Verifying : libselinux-3.5-5.fc39.s390x 87/153 Verifying : libsemanage-3.5-4.fc39.s390x 88/153 Verifying : libsepol-3.5-2.fc39.s390x 89/153 Verifying : libsigsegv-2.14-5.fc39.s390x 90/153 Verifying : libsmartcols-2.39.2-1.fc40.s390x 91/153 Verifying : libssh-0.10.5-2.fc39.s390x 92/153 Verifying : libssh-config-0.10.5-2.fc39.noarch 93/153 Verifying : libtasn1-4.19.0-3.fc39.s390x 94/153 Verifying : libtirpc-1.3.3-1.rc2.fc39.s390x 95/153 Verifying : libunistring-1.1-5.fc40.s390x 96/153 Verifying : libutempter-1.2.1-10.fc39.s390x 97/153 Verifying : libuuid-2.39.2-1.fc40.s390x 98/153 Verifying : libverto-0.3.2-6.fc39.s390x 99/153 Verifying : libxcrypt-4.4.36-2.fc39.s390x 100/153 Verifying : libxml2-2.11.5-1.fc40.s390x 101/153 Verifying : libzstd-1.5.5-4.fc39.s390x 102/153 Verifying : lua-libs-5.4.6-3.fc39.s390x 103/153 Verifying : lua-srpm-macros-1-9.fc39.noarch 104/153 Verifying : lz4-libs-1.9.4-4.fc39.s390x 105/153 Verifying : mpfr-4.2.0-3.fc39.s390x 106/153 Verifying : ncurses-base-6.4-7.20230520.fc40.noarch 107/153 Verifying : ncurses-libs-6.4-7.20230520.fc40.s390x 108/153 Verifying : ocaml-srpm-macros-8-2.fc39.noarch 109/153 Verifying : openblas-srpm-macros-2-14.fc39.noarch 110/153 Verifying : openldap-2.6.6-1.fc39.s390x 111/153 Verifying : openssl-libs-1:3.1.1-4.fc40.s390x 112/153 Verifying : p11-kit-0.25.0-2.fc39.s390x 113/153 Verifying : p11-kit-trust-0.25.0-2.fc39.s390x 114/153 Verifying : package-notes-srpm-macros-0.5-9.fc39.noarch 115/153 Verifying : pam-1.5.3-2.fc39.s390x 116/153 Verifying : pam-libs-1.5.3-2.fc39.s390x 117/153 Verifying : patch-2.7.6-22.fc39.s390x 118/153 Verifying : pcre2-10.42-1.fc39.2.s390x 119/153 Verifying : pcre2-syntax-10.42-1.fc39.2.noarch 120/153 Verifying : perl-srpm-macros-1-51.fc39.noarch 121/153 Verifying : pkgconf-1.9.5-2.fc39.s390x 122/153 Verifying : pkgconf-m4-1.9.5-2.fc39.noarch 123/153 Verifying : pkgconf-pkg-config-1.9.5-2.fc39.s390x 124/153 Verifying : popt-1.19-3.fc39.s390x 125/153 Verifying : publicsuffix-list-dafsa-20230812-1.fc40.noarch 126/153 Verifying : pyproject-srpm-macros-1.9.0-2.fc39.noarch 127/153 Verifying : python-srpm-macros-3.12-4.fc40.noarch 128/153 Verifying : qt5-srpm-macros-5.15.10-2.fc39.noarch 129/153 Verifying : qt6-srpm-macros-6.5.2-2.fc39.noarch 130/153 Verifying : readline-8.2-4.fc39.s390x 131/153 Verifying : rpm-4.18.99-1.fc40.s390x 132/153 Verifying : rpm-build-4.18.99-1.fc40.s390x 133/153 Verifying : rpm-build-libs-4.18.99-1.fc40.s390x 134/153 Verifying : rpm-libs-4.18.99-1.fc40.s390x 135/153 Verifying : rpm-sequoia-1.5.0-1.fc40.s390x 136/153 Verifying : rust-srpm-macros-24-5.fc40.noarch 137/153 Verifying : sed-4.8-14.fc39.s390x 138/153 Verifying : setup-2.14.4-1.fc39.noarch 139/153 Verifying : shadow-utils-2:4.14.0-1.fc40.s390x 140/153 Verifying : sqlite-libs-3.43.1-1.fc40.s390x 141/153 Verifying : systemd-libs-254.1-2.fc40.s390x 142/153 Verifying : tar-2:1.35-2.fc40.s390x 143/153 Verifying : tzdata-2023c-3.fc40.noarch 144/153 Verifying : unzip-6.0-62.fc39.s390x 145/153 Verifying : util-linux-2.39.2-1.fc40.s390x 146/153 Verifying : util-linux-core-2.39.2-1.fc40.s390x 147/153 Verifying : which-2.21-40.fc39.s390x 148/153 Verifying : xxhash-libs-0.8.2-1.fc39.s390x 149/153 Verifying : xz-5.4.4-1.fc39.s390x 150/153 Verifying : xz-libs-5.4.4-1.fc39.s390x 151/153 Verifying : zip-3.0-38.fc39.s390x 152/153 Verifying : zstd-1.5.5-4.fc39.s390x 153/153 Installed: alternatives-1.25-1.fc39.s390x ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-4.fc40.s390x authselect-1.4.2-3.fc39.s390x authselect-libs-1.4.2-3.fc39.s390x basesystem-11-18.fc39.noarch bash-5.2.15-5.fc39.s390x binutils-2.41-5.fc40.s390x binutils-gold-2.41-5.fc40.s390x bzip2-1.0.8-16.fc39.s390x bzip2-libs-1.0.8-16.fc39.s390x ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch coreutils-9.4-1.fc40.s390x coreutils-common-9.4-1.fc40.s390x cpio-2.14-4.fc39.s390x cracklib-2.9.11-2.fc39.s390x crypto-policies-20230731-1.git5ed06e0.fc39.noarch curl-8.3.0-1.fc40.s390x cyrus-sasl-lib-2.1.28-11.fc39.s390x debugedit-5.0-10.fc39.s390x diffutils-3.10-3.fc39.s390x dwz-0.15-3.fc39.s390x ed-1.19-4.fc39.s390x efi-srpm-macros-5-9.fc39.noarch elfutils-0.189-6.fc40.s390x elfutils-debuginfod-client-0.189-6.fc40.s390x elfutils-default-yama-scope-0.189-6.fc40.noarch elfutils-libelf-0.189-6.fc40.s390x elfutils-libs-0.189-6.fc40.s390x fedora-gpg-keys-40-0.1.noarch fedora-release-40-0.7.noarch fedora-release-common-40-0.7.noarch fedora-release-identity-basic-40-0.7.noarch fedora-repos-40-0.1.noarch fedora-repos-rawhide-40-0.1.noarch file-5.45-1.fc40.s390x file-libs-5.45-1.fc40.s390x filesystem-3.18-6.fc39.s390x findutils-1:4.9.0-6.fc40.s390x fonts-srpm-macros-1:2.0.5-12.fc39.noarch forge-srpm-macros-0.1.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.s390x gdb-minimal-13.2-8.fc40.s390x gdbm-libs-1:1.23-4.fc39.s390x ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38.9000-8.fc40.s390x glibc-common-2.38.9000-8.fc40.s390x glibc-gconv-extra-2.38.9000-8.fc40.s390x glibc-minimal-langpack-2.38.9000-8.fc40.s390x gmp-1:6.2.1-5.fc39.s390x gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.2.0-7.fc40.noarch grep-3.11-5.fc40.s390x gzip-1.12-6.fc39.s390x info-7.0.3-3.fc39.s390x jansson-2.13.1-7.fc39.s390x kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.s390x krb5-libs-1.21.2-1.fc40.s390x libacl-2.3.1-9.fc40.s390x libarchive-3.7.2-1.fc40.s390x libattr-2.5.1-9.fc40.s390x libblkid-2.39.2-1.fc40.s390x libbrotli-1.1.0-1.fc40.s390x libcap-2.48-7.fc39.s390x libcap-ng-0.8.3-8.fc40.s390x libcom_err-1.47.0-2.fc39.s390x libcurl-8.3.0-1.fc40.s390x libdb-5.3.28-58.fc40.s390x libeconf-0.5.2-1.fc40.s390x libevent-2.1.12-9.fc39.s390x libfdisk-2.39.2-1.fc40.s390x libffi-3.4.4-4.fc39.s390x libgcc-13.2.1-1.fc40.s390x libgomp-13.2.1-1.fc40.s390x libidn2-2.3.4-3.fc39.s390x libmount-2.39.2-1.fc40.s390x libnghttp2-1.56.0-1.fc40.s390x libnsl2-2.0.0-6.fc39.s390x libpkgconf-1.9.5-2.fc39.s390x libpsl-0.21.2-4.fc39.s390x libpwquality-1.4.5-6.fc39.s390x libselinux-3.5-5.fc39.s390x libsemanage-3.5-4.fc39.s390x libsepol-3.5-2.fc39.s390x libsigsegv-2.14-5.fc39.s390x libsmartcols-2.39.2-1.fc40.s390x libssh-0.10.5-2.fc39.s390x libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-1.fc40.s390x libtasn1-4.19.0-3.fc39.s390x libtirpc-1.3.3-1.rc2.fc39.s390x libunistring-1.1-5.fc40.s390x libutempter-1.2.1-10.fc39.s390x libuuid-2.39.2-1.fc40.s390x libverto-0.3.2-6.fc39.s390x libxcrypt-4.4.36-2.fc39.s390x libxml2-2.11.5-1.fc40.s390x libzstd-1.5.5-4.fc39.s390x lua-libs-5.4.6-3.fc39.s390x lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.s390x mpfr-4.2.0-3.fc39.s390x ncurses-base-6.4-7.20230520.fc40.noarch ncurses-libs-6.4-7.20230520.fc40.s390x ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.s390x openssl-libs-1:3.1.1-4.fc40.s390x p11-kit-0.25.0-2.fc39.s390x p11-kit-trust-0.25.0-2.fc39.s390x package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-2.fc39.s390x pam-libs-1.5.3-2.fc39.s390x patch-2.7.6-22.fc39.s390x pcre2-10.42-1.fc39.2.s390x pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.s390x pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.s390x popt-1.19-3.fc39.s390x publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.9.0-2.fc39.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.10-2.fc39.noarch qt6-srpm-macros-6.5.2-2.fc39.noarch readline-8.2-4.fc39.s390x redhat-rpm-config-270-1.fc40.noarch rpm-4.18.99-1.fc40.s390x rpm-build-4.18.99-1.fc40.s390x rpm-build-libs-4.18.99-1.fc40.s390x rpm-libs-4.18.99-1.fc40.s390x rpm-sequoia-1.5.0-1.fc40.s390x rust-srpm-macros-24-5.fc40.noarch sed-4.8-14.fc39.s390x setup-2.14.4-1.fc39.noarch shadow-utils-2:4.14.0-1.fc40.s390x sqlite-libs-3.43.1-1.fc40.s390x systemd-libs-254.1-2.fc40.s390x tar-2:1.35-2.fc40.s390x tzdata-2023c-3.fc40.noarch unzip-6.0-62.fc39.s390x util-linux-2.39.2-1.fc40.s390x util-linux-core-2.39.2-1.fc40.s390x which-2.21-40.fc39.s390x xxhash-libs-0.8.2-1.fc39.s390x xz-5.4.4-1.fc39.s390x xz-libs-5.4.4-1.fc39.s390x zip-3.0-38.fc39.s390x zlib-ng-compat-2.1.3-3.fc40.s390x zstd-1.5.5-4.fc39.s390x Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.25-1.fc39.s390x ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-4.fc40.s390x authselect-1.4.2-3.fc39.s390x authselect-libs-1.4.2-3.fc39.s390x basesystem-11-18.fc39.noarch bash-5.2.15-5.fc39.s390x binutils-2.41-5.fc40.s390x binutils-gold-2.41-5.fc40.s390x bzip2-1.0.8-16.fc39.s390x bzip2-libs-1.0.8-16.fc39.s390x ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch coreutils-9.4-1.fc40.s390x coreutils-common-9.4-1.fc40.s390x cpio-2.14-4.fc39.s390x cracklib-2.9.11-2.fc39.s390x crypto-policies-20230731-1.git5ed06e0.fc39.noarch curl-8.3.0-1.fc40.s390x cyrus-sasl-lib-2.1.28-11.fc39.s390x debugedit-5.0-10.fc39.s390x diffutils-3.10-3.fc39.s390x dwz-0.15-3.fc39.s390x ed-1.19-4.fc39.s390x efi-srpm-macros-5-9.fc39.noarch elfutils-0.189-6.fc40.s390x elfutils-debuginfod-client-0.189-6.fc40.s390x elfutils-default-yama-scope-0.189-6.fc40.noarch elfutils-libelf-0.189-6.fc40.s390x elfutils-libs-0.189-6.fc40.s390x fedora-gpg-keys-40-0.1.noarch fedora-release-40-0.7.noarch fedora-release-common-40-0.7.noarch fedora-release-identity-basic-40-0.7.noarch fedora-repos-40-0.1.noarch fedora-repos-rawhide-40-0.1.noarch file-5.45-1.fc40.s390x file-libs-5.45-1.fc40.s390x filesystem-3.18-6.fc39.s390x findutils-4.9.0-6.fc40.s390x fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.1.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.s390x gdb-minimal-13.2-8.fc40.s390x gdbm-libs-1.23-4.fc39.s390x ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38.9000-8.fc40.s390x glibc-common-2.38.9000-8.fc40.s390x glibc-gconv-extra-2.38.9000-8.fc40.s390x glibc-minimal-langpack-2.38.9000-8.fc40.s390x gmp-6.2.1-5.fc39.s390x gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.2.0-7.fc40.noarch gpg-pubkey-18b8e74c-62f2920f gpg-pubkey-a15b79cc-63d04c2c grep-3.11-5.fc40.s390x gzip-1.12-6.fc39.s390x info-7.0.3-3.fc39.s390x jansson-2.13.1-7.fc39.s390x kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.s390x krb5-libs-1.21.2-1.fc40.s390x libacl-2.3.1-9.fc40.s390x libarchive-3.7.2-1.fc40.s390x libattr-2.5.1-9.fc40.s390x libblkid-2.39.2-1.fc40.s390x libbrotli-1.1.0-1.fc40.s390x libcap-2.48-7.fc39.s390x libcap-ng-0.8.3-8.fc40.s390x libcom_err-1.47.0-2.fc39.s390x libcurl-8.3.0-1.fc40.s390x libdb-5.3.28-58.fc40.s390x libeconf-0.5.2-1.fc40.s390x libevent-2.1.12-9.fc39.s390x libfdisk-2.39.2-1.fc40.s390x libffi-3.4.4-4.fc39.s390x libgcc-13.2.1-1.fc40.s390x libgomp-13.2.1-1.fc40.s390x libidn2-2.3.4-3.fc39.s390x libmount-2.39.2-1.fc40.s390x libnghttp2-1.56.0-1.fc40.s390x libnsl2-2.0.0-6.fc39.s390x libpkgconf-1.9.5-2.fc39.s390x libpsl-0.21.2-4.fc39.s390x libpwquality-1.4.5-6.fc39.s390x libselinux-3.5-5.fc39.s390x libsemanage-3.5-4.fc39.s390x libsepol-3.5-2.fc39.s390x libsigsegv-2.14-5.fc39.s390x libsmartcols-2.39.2-1.fc40.s390x libssh-0.10.5-2.fc39.s390x libssh-config-0.10.5-2.fc39.noarch libstdc++-13.2.1-1.fc40.s390x libtasn1-4.19.0-3.fc39.s390x libtirpc-1.3.3-1.rc2.fc39.s390x libunistring-1.1-5.fc40.s390x libutempter-1.2.1-10.fc39.s390x libuuid-2.39.2-1.fc40.s390x libverto-0.3.2-6.fc39.s390x libxcrypt-4.4.36-2.fc39.s390x libxml2-2.11.5-1.fc40.s390x libzstd-1.5.5-4.fc39.s390x lua-libs-5.4.6-3.fc39.s390x lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.s390x mpfr-4.2.0-3.fc39.s390x ncurses-base-6.4-7.20230520.fc40.noarch ncurses-libs-6.4-7.20230520.fc40.s390x ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.s390x openssl-libs-3.1.1-4.fc40.s390x p11-kit-0.25.0-2.fc39.s390x p11-kit-trust-0.25.0-2.fc39.s390x package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-2.fc39.s390x pam-libs-1.5.3-2.fc39.s390x patch-2.7.6-22.fc39.s390x pcre2-10.42-1.fc39.2.s390x pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.s390x pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.s390x popt-1.19-3.fc39.s390x publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.9.0-2.fc39.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.10-2.fc39.noarch qt6-srpm-macros-6.5.2-2.fc39.noarch readline-8.2-4.fc39.s390x redhat-rpm-config-270-1.fc40.noarch rpm-4.18.99-1.fc40.s390x rpm-build-4.18.99-1.fc40.s390x rpm-build-libs-4.18.99-1.fc40.s390x rpm-libs-4.18.99-1.fc40.s390x rpm-sequoia-1.5.0-1.fc40.s390x rust-srpm-macros-24-5.fc40.noarch sed-4.8-14.fc39.s390x setup-2.14.4-1.fc39.noarch shadow-utils-4.14.0-1.fc40.s390x sqlite-libs-3.43.1-1.fc40.s390x systemd-libs-254.1-2.fc40.s390x tar-1.35-2.fc40.s390x tzdata-2023c-3.fc40.noarch unzip-6.0-62.fc39.s390x util-linux-2.39.2-1.fc40.s390x util-linux-core-2.39.2-1.fc40.s390x which-2.21-40.fc39.s390x xxhash-libs-0.8.2-1.fc39.s390x xz-5.4.4-1.fc39.s390x xz-libs-5.4.4-1.fc39.s390x zip-3.0-38.fc39.s390x zlib-ng-compat-2.1.3-3.fc40.s390x zstd-1.5.5-4.fc39.s390x Start: buildsrpm Start: rpmbuild -bs warning: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N) Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1689724800 Wrote: /builddir/build/SRPMS/bfast-0.7.0a-32.fc40.src.rpm RPM build warnings: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N) Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-s390x-1694931491.040946/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-s390x-1694931491.040946/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-s390x-1694931491.040946/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-1l2qlyi8/bfast/bfast.spec) Config(child) 1 minutes 16 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/bfast-0.7.0a-32.fc40.src.rpm) Config(fedora-rawhide-s390x) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1694931491.040946/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1694931491.040946/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1694931491.040946/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Finish: chroot init INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.18.99-1.fc40.s390x rpm-sequoia-1.5.0-1.fc40.s390x python3-dnf-4.16.2-4.fc40.noarch python3-dnf-plugins-core-4.4.2-1.fc39.noarch yum-4.16.2-4.fc40.noarch Start: build phase for bfast-0.7.0a-32.fc40.src.rpm Start: build setup for bfast-0.7.0a-32.fc40.src.rpm warning: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N) Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1689724800 Wrote: /builddir/build/SRPMS/bfast-0.7.0a-32.fc40.src.rpm RPM build warnings: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N) No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 266 B/s | 1.5 kB 00:05 fedora 14 kB/s | 5.5 kB 00:00 Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: autoconf noarch 2.71-7.fc40 fedora 733 k automake noarch 1.16.5-14.fc40 fedora 697 k bzip2-devel s390x 1.0.8-16.fc39 fedora 214 k gcc s390x 13.2.1-1.fc40 copr_base 28 M make s390x 1:4.4.1-2.fc39 fedora 605 k perl-generators noarch 1.16-3.fc39 fedora 16 k zlib-ng-compat-devel s390x 2.1.3-3.fc40 copr_base 34 k Installing dependencies: annobin-docs noarch 12.26-1.fc40 fedora 94 k annobin-plugin-gcc s390x 12.26-1.fc40 fedora 958 k cpp s390x 13.2.1-1.fc40 copr_base 8.8 M emacs-filesystem noarch 1:29.1-1.fc39 fedora 8.4 k gc s390x 8.2.2-4.fc39 fedora 114 k gcc-plugin-annobin s390x 13.2.1-1.fc40 copr_base 46 k glibc-devel s390x 2.38.9000-8.fc40 fedora 96 k glibc-headers-s390 noarch 2.38.9000-8.fc40 fedora 563 k groff-base s390x 1.23.0-2.fc39 fedora 1.2 M guile22 s390x 2.2.7-9.fc39 fedora 6.5 M kernel-headers s390x 6.6.0-0.rc1.git0.1.fc40 fedora 1.5 M libasan s390x 13.2.1-1.fc40 copr_base 507 k libatomic s390x 13.2.1-1.fc40 copr_base 34 k libmpc s390x 1.3.1-3.fc39 fedora 73 k libtool-ltdl s390x 2.4.7-8.fc40 fedora 37 k libubsan s390x 13.2.1-1.fc40 copr_base 219 k libxcrypt-devel s390x 4.4.36-2.fc39 fedora 30 k m4 s390x 1.4.19-7.fc40 fedora 313 k ncurses s390x 6.4-7.20230520.fc40 fedora 424 k perl-AutoLoader noarch 5.74-500.fc39 fedora 21 k perl-B s390x 1.88-500.fc39 fedora 178 k perl-Carp noarch 1.54-500.fc39 fedora 29 k perl-Class-Struct noarch 0.68-500.fc39 fedora 22 k perl-Data-Dumper s390x 2.188-501.fc39 fedora 57 k perl-Digest noarch 1.20-500.fc39 fedora 25 k perl-Digest-MD5 s390x 2.58-500.fc39 fedora 35 k perl-DynaLoader s390x 1.54-500.fc39 fedora 26 k perl-Encode s390x 4:3.19-500.fc39 fedora 1.7 M perl-Errno s390x 1.37-500.fc39 fedora 15 k perl-Exporter noarch 5.77-500.fc39 fedora 31 k perl-Fcntl s390x 1.15-500.fc39 fedora 21 k perl-Fedora-VSP noarch 0.001-32.fc39 fedora 23 k perl-File-Basename noarch 2.86-500.fc39 fedora 17 k perl-File-Compare noarch 1.100.700-500.fc39 fedora 13 k perl-File-Copy noarch 2.41-500.fc39 fedora 20 k perl-File-Find noarch 1.43-500.fc39 fedora 25 k perl-File-Path noarch 2.18-500.fc39 fedora 35 k perl-File-Temp noarch 1:0.231.100-500.fc39 fedora 58 k perl-File-stat noarch 1.13-500.fc39 fedora 17 k perl-FileHandle noarch 2.05-500.fc39 fedora 16 k perl-Getopt-Long noarch 1:2.54-500.fc39 fedora 60 k perl-Getopt-Std noarch 1.13-500.fc39 fedora 16 k perl-HTTP-Tiny noarch 0.088-3.fc39 fedora 56 k perl-IO s390x 1.52-500.fc39 fedora 82 k perl-IO-Socket-IP noarch 0.42-1.fc39 fedora 42 k perl-IO-Socket-SSL noarch 2.083-3.fc39 fedora 225 k perl-IPC-Open3 noarch 1.22-500.fc39 fedora 22 k perl-MIME-Base64 s390x 3.16-500.fc39 fedora 30 k perl-Mozilla-CA noarch 20230821-1.fc40 fedora 13 k perl-Net-SSLeay s390x 1.92-10.fc39 fedora 363 k perl-POSIX s390x 2.13-500.fc39 fedora 98 k perl-PathTools s390x 3.89-500.fc39 fedora 87 k perl-Pod-Escapes noarch 1:1.07-501.fc40 fedora 19 k perl-Pod-Perldoc noarch 3.28.01-501.fc39 fedora 86 k perl-Pod-Simple noarch 1:3.45-4.fc39 fedora 218 k perl-Pod-Usage noarch 4:2.03-500.fc39 fedora 39 k perl-Scalar-List-Utils s390x 5:1.63-500.fc39 fedora 74 k perl-SelectSaver noarch 1.02-500.fc39 fedora 12 k perl-Socket s390x 4:2.037-3.fc39 fedora 55 k perl-Storable s390x 1:3.32-500.fc39 fedora 100 k perl-Symbol noarch 1.09-500.fc39 fedora 14 k perl-Term-ANSIColor noarch 5.01-501.fc39 fedora 47 k perl-Term-Cap noarch 1.18-500.fc39 fedora 22 k perl-Text-ParseWords noarch 3.31-500.fc39 fedora 16 k perl-Text-Tabs+Wrap noarch 2023.0511-3.fc39 fedora 22 k perl-Thread-Queue noarch 3.14-501.fc40 fedora 21 k perl-Time-Local noarch 2:1.350-3.fc39 fedora 34 k perl-URI noarch 5.21-1.fc40 fedora 125 k perl-base noarch 2.27-500.fc39 fedora 16 k perl-constant noarch 1.33-501.fc39 fedora 22 k perl-if noarch 0.61.000-500.fc39 fedora 14 k perl-interpreter s390x 4:5.38.0-500.fc39 fedora 72 k perl-libnet noarch 3.15-501.fc39 fedora 129 k perl-libs s390x 4:5.38.0-500.fc39 fedora 2.5 M perl-locale noarch 1.10-500.fc39 fedora 14 k perl-macros noarch 4:5.38.0-500.fc39 fedora 12 k perl-mro s390x 1.28-500.fc39 fedora 29 k perl-overload noarch 1.37-500.fc39 fedora 46 k perl-overloading noarch 0.02-500.fc39 fedora 13 k perl-parent noarch 1:0.241-500.fc39 fedora 14 k perl-podlators noarch 1:5.01-500.fc39 fedora 125 k perl-threads s390x 1:2.36-500.fc39 fedora 58 k perl-threads-shared s390x 1.68-500.fc39 fedora 45 k perl-vars noarch 1.05-500.fc39 fedora 13 k Transaction Summary ================================================================================ Install 91 Packages Total size: 60 M Total download size: 11 M Installed size: 188 M Downloading Packages: [SKIPPED] cpp-13.2.1-1.fc40.s390x.rpm: Already downloaded [SKIPPED] gcc-13.2.1-1.fc40.s390x.rpm: Already downloaded [SKIPPED] gcc-plugin-annobin-13.2.1-1.fc40.s390x.rpm: Already downloaded [SKIPPED] libasan-13.2.1-1.fc40.s390x.rpm: Already downloaded [SKIPPED] libatomic-13.2.1-1.fc40.s390x.rpm: Already downloaded [SKIPPED] libubsan-13.2.1-1.fc40.s390x.rpm: Already downloaded [SKIPPED] zlib-ng-compat-devel-2.1.3-3.fc40.s390x.rpm: Already downloaded [SKIPPED] annobin-docs-12.26-1.fc40.noarch.rpm: Already downloaded [SKIPPED] annobin-plugin-gcc-12.26-1.fc40.s390x.rpm: Already downloaded [SKIPPED] gc-8.2.2-4.fc39.s390x.rpm: Already downloaded [SKIPPED] glibc-devel-2.38.9000-8.fc40.s390x.rpm: Already downloaded [SKIPPED] glibc-headers-s390-2.38.9000-8.fc40.noarch.rpm: Already downloaded [SKIPPED] guile22-2.2.7-9.fc39.s390x.rpm: Already downloaded [SKIPPED] kernel-headers-6.6.0-0.rc1.git0.1.fc40.s390x.rpm: Already downloaded [SKIPPED] libmpc-1.3.1-3.fc39.s390x.rpm: Already downloaded [SKIPPED] libtool-ltdl-2.4.7-8.fc40.s390x.rpm: Already downloaded [SKIPPED] libxcrypt-devel-4.4.36-2.fc39.s390x.rpm: Already downloaded [SKIPPED] make-4.4.1-2.fc39.s390x.rpm: Already downloaded (19/91): bzip2-devel-1.0.8-16.fc39.s390x.rpm 184 kB/s | 214 kB 00:01 (20/91): emacs-filesystem-29.1-1.fc39.noarch.rp 40 kB/s | 8.4 kB 00:00 (21/91): automake-1.16.5-14.fc40.noarch.rpm 468 kB/s | 697 kB 00:01 (22/91): autoconf-2.71-7.fc40.noarch.rpm 485 kB/s | 733 kB 00:01 (23/91): ncurses-6.4-7.20230520.fc40.s390x.rpm 1.6 MB/s | 424 kB 00:00 (24/91): m4-1.4.19-7.fc40.s390x.rpm 898 kB/s | 313 kB 00:00 (25/91): perl-AutoLoader-5.74-500.fc39.noarch.r 114 kB/s | 21 kB 00:00 (26/91): perl-B-1.88-500.fc39.s390x.rpm 826 kB/s | 178 kB 00:00 (27/91): groff-base-1.23.0-2.fc39.s390x.rpm 1.6 MB/s | 1.2 MB 00:00 (28/91): perl-Carp-1.54-500.fc39.noarch.rpm 153 kB/s | 29 kB 00:00 (29/91): perl-Class-Struct-0.68-500.fc39.noarch 119 kB/s | 22 kB 00:00 (30/91): perl-Data-Dumper-2.188-501.fc39.s390x. 303 kB/s | 57 kB 00:00 (31/91): perl-Digest-1.20-500.fc39.noarch.rpm 132 kB/s | 25 kB 00:00 (32/91): perl-Digest-MD5-2.58-500.fc39.s390x.rp 187 kB/s | 35 kB 00:00 (33/91): perl-DynaLoader-1.54-500.fc39.s390x.rp 139 kB/s | 26 kB 00:00 (34/91): perl-Errno-1.37-500.fc39.s390x.rpm 81 kB/s | 15 kB 00:00 (35/91): perl-Exporter-5.77-500.fc39.noarch.rpm 164 kB/s | 31 kB 00:00 (36/91): perl-Fcntl-1.15-500.fc39.s390x.rpm 111 kB/s | 21 kB 00:00 (37/91): perl-Encode-3.19-500.fc39.s390x.rpm 3.4 MB/s | 1.7 MB 00:00 (38/91): perl-Fedora-VSP-0.001-32.fc39.noarch.r 116 kB/s | 23 kB 00:00 (39/91): perl-File-Basename-2.86-500.fc39.noarc 85 kB/s | 17 kB 00:00 (40/91): perl-File-Compare-1.100.700-500.fc39.n 72 kB/s | 13 kB 00:00 (41/91): perl-File-Copy-2.41-500.fc39.noarch.rp 108 kB/s | 20 kB 00:00 (42/91): perl-File-Find-1.43-500.fc39.noarch.rp 125 kB/s | 25 kB 00:00 (43/91): perl-File-Path-2.18-500.fc39.noarch.rp 167 kB/s | 35 kB 00:00 (44/91): perl-File-Temp-0.231.100-500.fc39.noar 310 kB/s | 58 kB 00:00 (45/91): perl-File-stat-1.13-500.fc39.noarch.rp 93 kB/s | 17 kB 00:00 (46/91): perl-FileHandle-2.05-500.fc39.noarch.r 84 kB/s | 16 kB 00:00 (47/91): perl-Getopt-Long-2.54-500.fc39.noarch. 315 kB/s | 60 kB 00:00 (48/91): perl-Getopt-Std-1.13-500.fc39.noarch.r 85 kB/s | 16 kB 00:00 (49/91): perl-HTTP-Tiny-0.088-3.fc39.noarch.rpm 299 kB/s | 56 kB 00:00 (50/91): perl-IO-1.52-500.fc39.s390x.rpm 429 kB/s | 82 kB 00:00 (51/91): perl-IO-Socket-IP-0.42-1.fc39.noarch.r 220 kB/s | 42 kB 00:00 (52/91): perl-IO-Socket-SSL-2.083-3.fc39.noarch 1.1 MB/s | 225 kB 00:00 (53/91): perl-IPC-Open3-1.22-500.fc39.noarch.rp 118 kB/s | 22 kB 00:00 (54/91): perl-MIME-Base64-3.16-500.fc39.s390x.r 159 kB/s | 30 kB 00:00 (55/91): perl-Mozilla-CA-20230821-1.fc40.noarch 73 kB/s | 13 kB 00:00 (56/91): perl-Net-SSLeay-1.92-10.fc39.s390x.rpm 1.6 MB/s | 363 kB 00:00 (57/91): perl-POSIX-2.13-500.fc39.s390x.rpm 450 kB/s | 98 kB 00:00 (58/91): perl-PathTools-3.89-500.fc39.s390x.rpm 422 kB/s | 87 kB 00:00 (59/91): perl-Pod-Escapes-1.07-501.fc40.noarch. 95 kB/s | 19 kB 00:00 (60/91): perl-Pod-Perldoc-3.28.01-501.fc39.noar 416 kB/s | 86 kB 00:00 (61/91): perl-Pod-Simple-3.45-4.fc39.noarch.rpm 1.0 MB/s | 218 kB 00:00 (62/91): perl-Pod-Usage-2.03-500.fc39.noarch.rp 187 kB/s | 39 kB 00:00 (63/91): perl-Scalar-List-Utils-1.63-500.fc39.s 337 kB/s | 74 kB 00:00 (64/91): perl-SelectSaver-1.02-500.fc39.noarch. 59 kB/s | 12 kB 00:00 (65/91): perl-Socket-2.037-3.fc39.s390x.rpm 292 kB/s | 55 kB 00:00 (66/91): perl-Symbol-1.09-500.fc39.noarch.rpm 77 kB/s | 14 kB 00:00 (67/91): perl-Storable-3.32-500.fc39.s390x.rpm 497 kB/s | 100 kB 00:00 (68/91): perl-Term-ANSIColor-5.01-501.fc39.noar 251 kB/s | 47 kB 00:00 (69/91): perl-Term-Cap-1.18-500.fc39.noarch.rpm 118 kB/s | 22 kB 00:00 (70/91): perl-Text-ParseWords-3.31-500.fc39.noa 86 kB/s | 16 kB 00:00 (71/91): perl-Text-Tabs+Wrap-2023.0511-3.fc39.n 120 kB/s | 22 kB 00:00 (72/91): perl-Thread-Queue-3.14-501.fc40.noarch 105 kB/s | 21 kB 00:00 (73/91): perl-Time-Local-1.350-3.fc39.noarch.rp 182 kB/s | 34 kB 00:00 (74/91): perl-URI-5.21-1.fc40.noarch.rpm 640 kB/s | 125 kB 00:00 (75/91): perl-base-2.27-500.fc39.noarch.rpm 88 kB/s | 16 kB 00:00 (76/91): perl-constant-1.33-501.fc39.noarch.rpm 120 kB/s | 22 kB 00:00 (77/91): perl-generators-1.16-3.fc39.noarch.rpm 81 kB/s | 16 kB 00:00 (78/91): perl-if-0.61.000-500.fc39.noarch.rpm 76 kB/s | 14 kB 00:00 (79/91): perl-interpreter-5.38.0-500.fc39.s390x 368 kB/s | 72 kB 00:00 (80/91): perl-libnet-3.15-501.fc39.noarch.rpm 656 kB/s | 129 kB 00:00 (81/91): perl-locale-1.10-500.fc39.noarch.rpm 74 kB/s | 14 kB 00:00 (82/91): perl-macros-5.38.0-500.fc39.noarch.rpm 62 kB/s | 12 kB 00:00 (83/91): perl-libs-5.38.0-500.fc39.s390x.rpm 7.2 MB/s | 2.5 MB 00:00 (84/91): perl-mro-1.28-500.fc39.s390x.rpm 155 kB/s | 29 kB 00:00 (85/91): perl-overload-1.37-500.fc39.noarch.rpm 243 kB/s | 46 kB 00:00 (86/91): perl-overloading-0.02-500.fc39.noarch. 70 kB/s | 13 kB 00:00 (87/91): perl-parent-0.241-500.fc39.noarch.rpm 78 kB/s | 14 kB 00:00 (88/91): perl-podlators-5.01-500.fc39.noarch.rp 638 kB/s | 125 kB 00:00 (89/91): perl-threads-2.36-500.fc39.s390x.rpm 289 kB/s | 58 kB 00:00 (90/91): perl-threads-shared-1.68-500.fc39.s390 219 kB/s | 45 kB 00:00 (91/91): perl-vars-1.05-500.fc39.noarch.rpm 71 kB/s | 13 kB 00:00 -------------------------------------------------------------------------------- Total 1.6 MB/s | 11 MB 00:06 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : libmpc-1.3.1-3.fc39.s390x 1/91 Installing : cpp-13.2.1-1.fc40.s390x 2/91 Installing : ncurses-6.4-7.20230520.fc40.s390x 3/91 Installing : m4-1.4.19-7.fc40.s390x 4/91 Installing : libtool-ltdl-2.4.7-8.fc40.s390x 5/91 Installing : kernel-headers-6.6.0-0.rc1.git0.1.fc40.s390x 6/91 Running scriptlet: groff-base-1.23.0-2.fc39.s390x 7/91 Installing : groff-base-1.23.0-2.fc39.s390x 7/91 Running scriptlet: groff-base-1.23.0-2.fc39.s390x 7/91 Installing : perl-Digest-1.20-500.fc39.noarch 8/91 Installing : perl-Digest-MD5-2.58-500.fc39.s390x 9/91 Installing : perl-B-1.88-500.fc39.s390x 10/91 Installing : perl-FileHandle-2.05-500.fc39.noarch 11/91 Installing : perl-Data-Dumper-2.188-501.fc39.s390x 12/91 Installing : perl-libnet-3.15-501.fc39.noarch 13/91 Installing : perl-AutoLoader-5.74-500.fc39.noarch 14/91 Installing : perl-base-2.27-500.fc39.noarch 15/91 Installing : perl-URI-5.21-1.fc40.noarch 16/91 Installing : perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch 17/91 Installing : perl-Mozilla-CA-20230821-1.fc40.noarch 18/91 Installing : perl-if-0.61.000-500.fc39.noarch 19/91 Installing : perl-locale-1.10-500.fc39.noarch 20/91 Installing : perl-IO-Socket-IP-0.42-1.fc39.noarch 21/91 Installing : perl-Time-Local-2:1.350-3.fc39.noarch 22/91 Installing : perl-File-Path-2.18-500.fc39.noarch 23/91 Installing : perl-IO-Socket-SSL-2.083-3.fc39.noarch 24/91 Installing : perl-Net-SSLeay-1.92-10.fc39.s390x 25/91 Installing : perl-Pod-Escapes-1:1.07-501.fc40.noarch 26/91 Installing : perl-Class-Struct-0.68-500.fc39.noarch 27/91 Installing : perl-Term-ANSIColor-5.01-501.fc39.noarch 28/91 Installing : perl-POSIX-2.13-500.fc39.s390x 29/91 Installing : perl-IPC-Open3-1.22-500.fc39.noarch 30/91 Installing : perl-File-Temp-1:0.231.100-500.fc39.noarch 31/91 Installing : perl-HTTP-Tiny-0.088-3.fc39.noarch 32/91 Installing : perl-Term-Cap-1.18-500.fc39.noarch 33/91 Installing : perl-Pod-Simple-1:3.45-4.fc39.noarch 34/91 Installing : perl-Socket-4:2.037-3.fc39.s390x 35/91 Installing : perl-SelectSaver-1.02-500.fc39.noarch 36/91 Installing : perl-Symbol-1.09-500.fc39.noarch 37/91 Installing : perl-File-stat-1.13-500.fc39.noarch 38/91 Installing : perl-podlators-1:5.01-500.fc39.noarch 39/91 Installing : perl-Pod-Perldoc-3.28.01-501.fc39.noarch 40/91 Installing : perl-Fcntl-1.15-500.fc39.s390x 41/91 Installing : perl-Text-ParseWords-3.31-500.fc39.noarch 42/91 Installing : perl-mro-1.28-500.fc39.s390x 43/91 Installing : perl-IO-1.52-500.fc39.s390x 44/91 Installing : perl-overloading-0.02-500.fc39.noarch 45/91 Installing : perl-Pod-Usage-4:2.03-500.fc39.noarch 46/91 Installing : perl-Errno-1.37-500.fc39.s390x 47/91 Installing : perl-File-Basename-2.86-500.fc39.noarch 48/91 Installing : perl-Getopt-Std-1.13-500.fc39.noarch 49/91 Installing : perl-MIME-Base64-3.16-500.fc39.s390x 50/91 Installing : perl-Scalar-List-Utils-5:1.63-500.fc39.s390x 51/91 Installing : perl-constant-1.33-501.fc39.noarch 52/91 Installing : perl-Storable-1:3.32-500.fc39.s390x 53/91 Installing : perl-overload-1.37-500.fc39.noarch 54/91 Installing : perl-parent-1:0.241-500.fc39.noarch 55/91 Installing : perl-vars-1.05-500.fc39.noarch 56/91 Installing : perl-Getopt-Long-1:2.54-500.fc39.noarch 57/91 Installing : perl-Carp-1.54-500.fc39.noarch 58/91 Installing : perl-Exporter-5.77-500.fc39.noarch 59/91 Installing : perl-PathTools-3.89-500.fc39.s390x 60/91 Installing : perl-DynaLoader-1.54-500.fc39.s390x 61/91 Installing : perl-Encode-4:3.19-500.fc39.s390x 62/91 Installing : perl-libs-4:5.38.0-500.fc39.s390x 63/91 Installing : perl-interpreter-4:5.38.0-500.fc39.s390x 64/91 Installing : perl-threads-1:2.36-500.fc39.s390x 65/91 Installing : perl-threads-shared-1.68-500.fc39.s390x 66/91 Installing : perl-Thread-Queue-3.14-501.fc40.noarch 67/91 Installing : perl-macros-4:5.38.0-500.fc39.noarch 68/91 Installing : perl-Fedora-VSP-0.001-32.fc39.noarch 69/91 Installing : perl-File-Compare-1.100.700-500.fc39.noarch 70/91 Installing : perl-File-Copy-2.41-500.fc39.noarch 71/91 Installing : perl-File-Find-1.43-500.fc39.noarch 72/91 Installing : glibc-headers-s390-2.38.9000-8.fc40.noarch 73/91 Installing : libxcrypt-devel-4.4.36-2.fc39.s390x 74/91 Installing : glibc-devel-2.38.9000-8.fc40.s390x 75/91 Installing : gc-8.2.2-4.fc39.s390x 76/91 Installing : guile22-2.2.7-9.fc39.s390x 77/91 Installing : make-1:4.4.1-2.fc39.s390x 78/91 Installing : emacs-filesystem-1:29.1-1.fc39.noarch 79/91 Installing : autoconf-2.71-7.fc40.noarch 80/91 Installing : annobin-docs-12.26-1.fc40.noarch 81/91 Installing : libubsan-13.2.1-1.fc40.s390x 82/91 Installing : libatomic-13.2.1-1.fc40.s390x 83/91 Installing : libasan-13.2.1-1.fc40.s390x 84/91 Installing : gcc-13.2.1-1.fc40.s390x 85/91 Running scriptlet: gcc-13.2.1-1.fc40.s390x 85/91 Installing : gcc-plugin-annobin-13.2.1-1.fc40.s390x 86/91 Running scriptlet: gcc-plugin-annobin-13.2.1-1.fc40.s390x 86/91 Installing : annobin-plugin-gcc-12.26-1.fc40.s390x 87/91 Running 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gc-8.2.2-4.fc39.s390x 14/91 Verifying : glibc-devel-2.38.9000-8.fc40.s390x 15/91 Verifying : glibc-headers-s390-2.38.9000-8.fc40.noarch 16/91 Verifying : groff-base-1.23.0-2.fc39.s390x 17/91 Verifying : guile22-2.2.7-9.fc39.s390x 18/91 Verifying : kernel-headers-6.6.0-0.rc1.git0.1.fc40.s390x 19/91 Verifying : libmpc-1.3.1-3.fc39.s390x 20/91 Verifying : libtool-ltdl-2.4.7-8.fc40.s390x 21/91 Verifying : libxcrypt-devel-4.4.36-2.fc39.s390x 22/91 Verifying : m4-1.4.19-7.fc40.s390x 23/91 Verifying : make-1:4.4.1-2.fc39.s390x 24/91 Verifying : ncurses-6.4-7.20230520.fc40.s390x 25/91 Verifying : perl-AutoLoader-5.74-500.fc39.noarch 26/91 Verifying : perl-B-1.88-500.fc39.s390x 27/91 Verifying : perl-Carp-1.54-500.fc39.noarch 28/91 Verifying : perl-Class-Struct-0.68-500.fc39.noarch 29/91 Verifying : perl-Data-Dumper-2.188-501.fc39.s390x 30/91 Verifying : perl-Digest-1.20-500.fc39.noarch 31/91 Verifying : perl-Digest-MD5-2.58-500.fc39.s390x 32/91 Verifying : perl-DynaLoader-1.54-500.fc39.s390x 33/91 Verifying : perl-Encode-4:3.19-500.fc39.s390x 34/91 Verifying : perl-Errno-1.37-500.fc39.s390x 35/91 Verifying : perl-Exporter-5.77-500.fc39.noarch 36/91 Verifying : perl-Fcntl-1.15-500.fc39.s390x 37/91 Verifying : perl-Fedora-VSP-0.001-32.fc39.noarch 38/91 Verifying : perl-File-Basename-2.86-500.fc39.noarch 39/91 Verifying : perl-File-Compare-1.100.700-500.fc39.noarch 40/91 Verifying : perl-File-Copy-2.41-500.fc39.noarch 41/91 Verifying : perl-File-Find-1.43-500.fc39.noarch 42/91 Verifying : perl-File-Path-2.18-500.fc39.noarch 43/91 Verifying : perl-File-Temp-1:0.231.100-500.fc39.noarch 44/91 Verifying : perl-File-stat-1.13-500.fc39.noarch 45/91 Verifying : perl-FileHandle-2.05-500.fc39.noarch 46/91 Verifying : perl-Getopt-Long-1:2.54-500.fc39.noarch 47/91 Verifying : perl-Getopt-Std-1.13-500.fc39.noarch 48/91 Verifying : perl-HTTP-Tiny-0.088-3.fc39.noarch 49/91 Verifying : perl-IO-1.52-500.fc39.s390x 50/91 Verifying : perl-IO-Socket-IP-0.42-1.fc39.noarch 51/91 Verifying : 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perl-Text-ParseWords-3.31-500.fc39.noarch 70/91 Verifying : perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch 71/91 Verifying : perl-Thread-Queue-3.14-501.fc40.noarch 72/91 Verifying : perl-Time-Local-2:1.350-3.fc39.noarch 73/91 Verifying : perl-URI-5.21-1.fc40.noarch 74/91 Verifying : perl-base-2.27-500.fc39.noarch 75/91 Verifying : perl-constant-1.33-501.fc39.noarch 76/91 Verifying : perl-generators-1.16-3.fc39.noarch 77/91 Verifying : perl-if-0.61.000-500.fc39.noarch 78/91 Verifying : perl-interpreter-4:5.38.0-500.fc39.s390x 79/91 Verifying : perl-libnet-3.15-501.fc39.noarch 80/91 Verifying : perl-libs-4:5.38.0-500.fc39.s390x 81/91 Verifying : perl-locale-1.10-500.fc39.noarch 82/91 Verifying : perl-macros-4:5.38.0-500.fc39.noarch 83/91 Verifying : perl-mro-1.28-500.fc39.s390x 84/91 Verifying : perl-overload-1.37-500.fc39.noarch 85/91 Verifying : perl-overloading-0.02-500.fc39.noarch 86/91 Verifying : perl-parent-1:0.241-500.fc39.noarch 87/91 Verifying : perl-podlators-1:5.01-500.fc39.noarch 88/91 Verifying : perl-threads-1:2.36-500.fc39.s390x 89/91 Verifying : perl-threads-shared-1.68-500.fc39.s390x 90/91 Verifying : perl-vars-1.05-500.fc39.noarch 91/91 Installed: annobin-docs-12.26-1.fc40.noarch annobin-plugin-gcc-12.26-1.fc40.s390x autoconf-2.71-7.fc40.noarch automake-1.16.5-14.fc40.noarch bzip2-devel-1.0.8-16.fc39.s390x cpp-13.2.1-1.fc40.s390x emacs-filesystem-1:29.1-1.fc39.noarch gc-8.2.2-4.fc39.s390x gcc-13.2.1-1.fc40.s390x gcc-plugin-annobin-13.2.1-1.fc40.s390x glibc-devel-2.38.9000-8.fc40.s390x glibc-headers-s390-2.38.9000-8.fc40.noarch groff-base-1.23.0-2.fc39.s390x guile22-2.2.7-9.fc39.s390x kernel-headers-6.6.0-0.rc1.git0.1.fc40.s390x libasan-13.2.1-1.fc40.s390x libatomic-13.2.1-1.fc40.s390x libmpc-1.3.1-3.fc39.s390x libtool-ltdl-2.4.7-8.fc40.s390x libubsan-13.2.1-1.fc40.s390x libxcrypt-devel-4.4.36-2.fc39.s390x m4-1.4.19-7.fc40.s390x make-1:4.4.1-2.fc39.s390x ncurses-6.4-7.20230520.fc40.s390x perl-AutoLoader-5.74-500.fc39.noarch perl-B-1.88-500.fc39.s390x perl-Carp-1.54-500.fc39.noarch perl-Class-Struct-0.68-500.fc39.noarch perl-Data-Dumper-2.188-501.fc39.s390x perl-Digest-1.20-500.fc39.noarch perl-Digest-MD5-2.58-500.fc39.s390x perl-DynaLoader-1.54-500.fc39.s390x perl-Encode-4:3.19-500.fc39.s390x perl-Errno-1.37-500.fc39.s390x perl-Exporter-5.77-500.fc39.noarch perl-Fcntl-1.15-500.fc39.s390x perl-Fedora-VSP-0.001-32.fc39.noarch perl-File-Basename-2.86-500.fc39.noarch perl-File-Compare-1.100.700-500.fc39.noarch perl-File-Copy-2.41-500.fc39.noarch perl-File-Find-1.43-500.fc39.noarch perl-File-Path-2.18-500.fc39.noarch perl-File-Temp-1:0.231.100-500.fc39.noarch perl-File-stat-1.13-500.fc39.noarch perl-FileHandle-2.05-500.fc39.noarch perl-Getopt-Long-1:2.54-500.fc39.noarch perl-Getopt-Std-1.13-500.fc39.noarch perl-HTTP-Tiny-0.088-3.fc39.noarch perl-IO-1.52-500.fc39.s390x perl-IO-Socket-IP-0.42-1.fc39.noarch perl-IO-Socket-SSL-2.083-3.fc39.noarch perl-IPC-Open3-1.22-500.fc39.noarch perl-MIME-Base64-3.16-500.fc39.s390x perl-Mozilla-CA-20230821-1.fc40.noarch perl-Net-SSLeay-1.92-10.fc39.s390x perl-POSIX-2.13-500.fc39.s390x perl-PathTools-3.89-500.fc39.s390x perl-Pod-Escapes-1:1.07-501.fc40.noarch perl-Pod-Perldoc-3.28.01-501.fc39.noarch perl-Pod-Simple-1:3.45-4.fc39.noarch perl-Pod-Usage-4:2.03-500.fc39.noarch perl-Scalar-List-Utils-5:1.63-500.fc39.s390x perl-SelectSaver-1.02-500.fc39.noarch perl-Socket-4:2.037-3.fc39.s390x perl-Storable-1:3.32-500.fc39.s390x perl-Symbol-1.09-500.fc39.noarch perl-Term-ANSIColor-5.01-501.fc39.noarch perl-Term-Cap-1.18-500.fc39.noarch perl-Text-ParseWords-3.31-500.fc39.noarch perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch perl-Thread-Queue-3.14-501.fc40.noarch perl-Time-Local-2:1.350-3.fc39.noarch perl-URI-5.21-1.fc40.noarch perl-base-2.27-500.fc39.noarch perl-constant-1.33-501.fc39.noarch perl-generators-1.16-3.fc39.noarch perl-if-0.61.000-500.fc39.noarch perl-interpreter-4:5.38.0-500.fc39.s390x perl-libnet-3.15-501.fc39.noarch perl-libs-4:5.38.0-500.fc39.s390x perl-locale-1.10-500.fc39.noarch perl-macros-4:5.38.0-500.fc39.noarch perl-mro-1.28-500.fc39.s390x perl-overload-1.37-500.fc39.noarch perl-overloading-0.02-500.fc39.noarch perl-parent-1:0.241-500.fc39.noarch perl-podlators-1:5.01-500.fc39.noarch perl-threads-1:2.36-500.fc39.s390x perl-threads-shared-1.68-500.fc39.s390x perl-vars-1.05-500.fc39.noarch zlib-ng-compat-devel-2.1.3-3.fc40.s390x Complete! Finish: build setup for bfast-0.7.0a-32.fc40.src.rpm Start: rpmbuild bfast-0.7.0a-32.fc40.src.rpm warning: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N) Building target platforms: s390x Building for target s390x setting SOURCE_DATE_EPOCH=1689724800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.zTSmQB + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf bfast-0.7.0a + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/bfast-0.7.0a.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd bfast-0.7.0a + rm -rf /builddir/build/BUILD/bfast-0.7.0a-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/bfast-0.7.0a-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . Patch #0 (bfast-pthread-new.patch): + echo 'Patch #0 (bfast-pthread-new.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 --fuzz=0 patching file bfast/Makefile.am patching file bfast/Makefile.in patching file butil/Makefile.am patching file butil/Makefile.in patching file scripts/Makefile.am patching file scripts/Makefile.in patching file tests/Makefile.in + sed -i -e 's,^\(CFLAGS="${default_CFLAGS} ${extended_CFLAGS}"\),# \1,' configure.ac + autoreconf -fi configure.ac:23: warning: The macro `AC_GNU_SOURCE' is obsolete. configure.ac:23: You should run autoupdate. ./lib/autoconf/specific.m4:312: AC_GNU_SOURCE is expanded from... configure.ac:23: the top level configure.ac:87: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:87: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:87: the top level parallel-tests: installing 'config/test-driver' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.L8nXH4 + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd bfast-0.7.0a + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']' ++ find . -type f -name configure -print + for file in $(find . -type f -name configure -print) + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure + diff -u ./configure.backup ./configure --- ./configure.backup 2023-09-17 06:19:51.488113811 +0000 +++ ./configure 2023-09-17 06:19:52.178113811 +0000 @@ -1692,7 +1692,7 @@ #ifdef __cplusplus extern "C" #endif -char $2 (); +__attribute__ ((used)) char $2 (); /* The GNU C library defines this for functions which it implements to always fail with ENOSYS. Some functions are actually named something starting with __ and the normal name is an alias. */ + /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure + diff -u ./configure.backup ./configure + mv ./configure.backup ./configure + '[' 1 = 1 ']' +++ dirname ./configure ++ find . -name config.guess -o -name config.sub + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./config/config.sub + '[' -f /usr/lib/rpm/redhat/config.sub ']' + /usr/bin/rm -f ./config/config.sub ++ basename ./config/config.sub + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config/config.sub '/usr/lib/rpm/redhat/config.sub' -> './config/config.sub' + for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub) ++ basename ./config/config.guess + '[' -f /usr/lib/rpm/redhat/config.guess ']' + /usr/bin/rm -f ./config/config.guess ++ basename ./config/config.guess + /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config/config.guess '/usr/lib/rpm/redhat/config.guess' -> './config/config.guess' + '[' 1 = 1 ']' + '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']' ++ find . -name ltmain.sh ++ grep -q runstatedir=DIR ./configure ++ echo --runstatedir=/run + ./configure --build=s390x-redhat-linux --host=s390x-redhat-linux --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline' checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... s390x-redhat-linux-gnu checking for s390x-redhat-linux-gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for wchar.h... yes checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking whether _XOPEN_SOURCE should be defined... no ./configure: line 4851: git: command not found checking for bzlib.h... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for an ANSI C-conforming const... yes checking host system type... s390x-redhat-linux-gnu checking for GNU libc compatible malloc... yes checking for GNU libc compatible realloc... yes checking for pow in -lm... yes checking for gzread in -lz... yes checking for floor... yes checking for pow... yes checking for sqrt... yes checking for strchr... yes checking for strdup... yes checking for strpbrk... yes checking for strstr... yes checking for strtok_r... yes checking for _LARGEFILE_SOURCE value needed for large files... no checking for int8_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint32_t... yes checking for uint64_t... yes checking size of short int... 2 checking size of int... 4 checking size of long int... 8 checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for limits.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for float.h... yes checking for zlib.h... yes checking for fcntl.h... yes checking for inline... inline checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating bfast/Makefile config.status: creating butil/Makefile config.status: creating scripts/Makefile config.status: creating tests/Makefile config.status: creating config.h config.status: executing depfiles commands + /usr/bin/make -O -j2 V=1 VERBOSE=1 /usr/bin/make all-recursive Making all in bfast make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o AlignedEnd.o AlignedEnd.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o AlignedEntry.o AlignedEntry.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o AlignedRead.o AlignedRead.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o BError.o BError.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o AlignedReadConvert.o AlignedReadConvert.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o RGBinary.o RGBinary.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' RGBinary.c: In function ‘RGBinaryReadBinaryHeader’: RGBinary.c:260:17: warning: variable ‘numCharsPerByte’ set but not used [-Wunused-but-set-variable] 260 | int32_t numCharsPerByte; | ^~~~~~~~~~~~~~~ RGBinary.c: In function ‘RGBinaryWriteBinaryHeader’: RGBinary.c:387:17: warning: variable ‘numCharsPerByte’ set but not used [-Wunused-but-set-variable] 387 | int32_t numCharsPerByte; | ^~~~~~~~~~~~~~~ RGBinary.c: In function ‘RGBinaryWriteBinary’: RGBinary.c:421:17: warning: variable ‘numCharsPerByte’ set but not used [-Wunused-but-set-variable] 421 | int32_t numCharsPerByte; | ^~~~~~~~~~~~~~~ RGBinary.c: In function ‘RGBinaryGetFourBit’: RGBinary.c:820:14: warning: variable ‘curChar’ set but not used [-Wunused-but-set-variable] 820 | char curChar; | ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o BLib.o BLib.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o RGIndexAccuracy.o RGIndexAccuracy.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o RGIndexExons.o RGIndexExons.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o RGIndexLayout.o RGIndexLayout.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o RGIndex.o RGIndex.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' RGIndex.c: In function ‘RGIndexCreateHelper’: RGIndex.c:463:31: warning: variable ‘keyEndPos’ set but not used [-Wunused-but-set-variable] 463 | uint32_t keyStartPos, keyEndPos; | ^~~~~~~~~ RGIndex.c: In function ‘RGIndexCompareContigPos’: RGIndex.c:2428:25: warning: variable ‘length’ set but not used [-Wunused-but-set-variable] 2428 | int32_t length; | ^~~~~~ make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o RGMatch.o RGMatch.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' RGMatch.c: In function ‘RGMatchRead’: RGMatch.c:23:25: warning: passing argument 1 of ‘feof’ from incompatible pointer type [-Wincompatible-pointer-types] 23 | if(feof(fp) != 0) { | ^~ | | | gzFile {aka struct gzFile_s *} In file included from RGMatch.c:2: /usr/include/stdio.h:846:24: note: expected ‘FILE *’ but argument is of type ‘gzFile’ {aka ‘struct gzFile_s *’} 846 | extern int feof (FILE *__stream) __THROW __wur; | ~~~~~~^~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o RGMatches.o RGMatches.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o RGRanges.o RGRanges.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o ScoringMatrix.o ScoringMatrix.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o RGReads.o RGReads.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o Align.o Align.c Align.c: In function ‘AlignExact’: Align.c:499:22: warning: variable ‘colorErrorAligned’ set but not used [-Wunused-but-set-variable] 499 | char colorErrorAligned[SEQUENCE_LENGTH]="\0"; | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o AlignNTSpace.o AlignNTSpace.c AlignNTSpace.c: In function ‘AlignNTSpaceRecoverAlignmentFromMatrix’: AlignNTSpace.c:225:14: warning: variable ‘curReadBase’ set but not used [-Wunused-but-set-variable] 225 | char curReadBase; | ^~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o AlignMatrix.o AlignMatrix.c AlignMatrix.c: In function ‘AlignMatrixReallocate’: AlignMatrix.c:12:30: warning: variable ‘prevNCol’ set but not used [-Wunused-but-set-variable] 12 | int32_t i, prevNRow, prevNCol; | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o AlignColorSpace.o AlignColorSpace.c AlignColorSpace.c: In function ‘AlignColorSpaceGappedConstrained’: AlignColorSpace.c:379:68: warning: operation on ‘(*(matrix->cells + ((sizetype)i + 1) * 8) + ((sizetype)j + 1) * 180)->s.score[k]’ may be undefined [-Wsequence-point] 379 | matrix->cells[i+1][j+1].s.score[k] = LOWERBOUNDSCORE(matrix->cells[i+1][j+1].s.score[k]); AlignColorSpace.c:384:38: warning: variable ‘max’ set but not used [-Wunused-but-set-variable] 384 | char max = GAP; | ^~~ AlignColorSpace.c: In function ‘AlignColorSpaceFillInCell’: AlignColorSpace.c:848:30: warning: variable ‘max’ set but not used [-Wunused-but-set-variable] 848 | char max = GAP; | ^~~ AlignColorSpace.c:899:22: warning: variable ‘max’ set but not used [-Wunused-but-set-variable] 899 | char max = GAP; | ^~~ AlignColorSpace.c:986:30: warning: variable ‘max’ set but not used [-Wunused-but-set-variable] 986 | char max = GAP; | ^~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o MatchesReadInputFiles.o MatchesReadInputFiles.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o RunLocalAlign.o RunLocalAlign.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o RunMatch.o RunMatch.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o RunAlign.o RunAlign.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o BfastFasta2BRG.o BfastFasta2BRG.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o RunPostProcess.o RunPostProcess.c RunPostProcess.c: In function ‘FilterAlignedRead’: RunPostProcess.c:685:23: warning: variable ‘bestIndex’ set but not used [-Wunused-but-set-variable] 685 | int32_t best, bestIndex, numBest; | ^~~~~~~~~ RunPostProcess.c: In function ‘GetPEDBins’: RunPostProcess.c:850:17: warning: variable ‘alignQueueLength’ set but not used [-Wunused-but-set-variable] 850 | int32_t alignQueueLength; | ^~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o BfastIndex.o BfastIndex.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o BfastLocalAlign.o BfastLocalAlign.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o BfastMatch.o BfastMatch.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o BfastBAFConvert.o BfastBAFConvert.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o BfastPostProcess.o BfastPostProcess.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o BfastHeader.o BfastHeader.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o BfastBRG2Fasta.o BfastBRG2Fasta.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o BfastBMFConvert.o BfastBMFConvert.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o aflib.o aflib.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o BfastAlign.o BfastAlign.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o Main.o Main.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o bfast AlignedEnd.o AlignedEntry.o AlignedRead.o AlignedReadConvert.o BError.o BLib.o RGBinary.o RGIndex.o RGIndexAccuracy.o RGIndexExons.o RGIndexLayout.o RGMatch.o RGMatches.o RGRanges.o RGReads.o ScoringMatrix.o Align.o AlignNTSpace.o AlignColorSpace.o AlignMatrix.o MatchesReadInputFiles.o RunMatch.o RunLocalAlign.o RunPostProcess.o RunAlign.o BfastFasta2BRG.o BfastIndex.o BfastMatch.o BfastLocalAlign.o BfastPostProcess.o BfastBAFConvert.o BfastHeader.o BfastBMFConvert.o BfastBRG2Fasta.o BfastAlign.o aflib.o Main.o -lpthread -lm -lbz2 -lz make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' Making all in butil make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o balignmentscoredistribution.o balignmentscoredistribution.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o ../bfast/RGIndexExons.o ../bfast/RGIndexExons.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o SimRead.o SimRead.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o ../bfast/RGMatches.o ../bfast/RGMatches.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o ../bfast/RGIndexAccuracy.o ../bfast/RGIndexAccuracy.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o ../bfast/RunLocalAlign.o ../bfast/RunLocalAlign.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o ../bfast/ScoringMatrix.o ../bfast/ScoringMatrix.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o ../bfast/Align.o ../bfast/Align.c ../bfast/Align.c: In function ‘AlignExact’: ../bfast/Align.c:499:22: warning: variable ‘colorErrorAligned’ set but not used [-Wunused-but-set-variable] 499 | char colorErrorAligned[SEQUENCE_LENGTH]="\0"; | ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o ../bfast/AlignColorSpace.o ../bfast/AlignColorSpace.c ../bfast/AlignColorSpace.c: In function ‘AlignColorSpaceGappedConstrained’: ../bfast/AlignColorSpace.c:379:68: warning: operation on ‘(*(matrix->cells + ((sizetype)i + 1) * 8) + ((sizetype)j + 1) * 180)->s.score[k]’ may be undefined [-Wsequence-point] 379 | matrix->cells[i+1][j+1].s.score[k] = LOWERBOUNDSCORE(matrix->cells[i+1][j+1].s.score[k]); ../bfast/AlignColorSpace.c:384:38: warning: variable ‘max’ set but not used [-Wunused-but-set-variable] 384 | char max = GAP; | ^~~ ../bfast/AlignColorSpace.c: In function ‘AlignColorSpaceFillInCell’: ../bfast/AlignColorSpace.c:848:30: warning: variable ‘max’ set but not used [-Wunused-but-set-variable] 848 | char max = GAP; | ^~~ ../bfast/AlignColorSpace.c:899:22: warning: variable ‘max’ set but not used [-Wunused-but-set-variable] 899 | char max = GAP; | ^~~ ../bfast/AlignColorSpace.c:986:30: warning: variable ‘max’ set but not used [-Wunused-but-set-variable] 986 | char max = GAP; | ^~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o ../bfast/AlignMatrix.o ../bfast/AlignMatrix.c ../bfast/AlignMatrix.c: In function ‘AlignMatrixReallocate’: ../bfast/AlignMatrix.c:12:30: warning: variable ‘prevNCol’ set but not used [-Wunused-but-set-variable] 12 | int32_t i, prevNRow, prevNCol; | ^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o ../bfast/AlignNTSpace.o ../bfast/AlignNTSpace.c ../bfast/AlignNTSpace.c: In function ‘AlignNTSpaceRecoverAlignmentFromMatrix’: ../bfast/AlignNTSpace.c:225:14: warning: variable ‘curReadBase’ set but not used [-Wunused-but-set-variable] 225 | char curReadBase; | ^~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o balignsim.o balignsim.c balignsim.c: In function ‘Run’: balignsim.c:174:16: warning: variable ‘mismatchScore’ set but not used [-Wunused-but-set-variable] 174 | double mismatchScore; | ^~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o bgeneratereads.o bgeneratereads.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o bevalsim.o bevalsim.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o bindexdist.o bindexdist.c bindexdist.c: In function ‘PrintDistribution’: bindexdist.c:128:17: warning: variable ‘numDifferent’ set but not used [-Wunused-but-set-variable] 128 | int64_t numDifferent = 0; | ^~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o ../bfast/RGReads.o ../bfast/RGReads.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o bindexhist.o bindexhist.c bindexhist.c: In function ‘PrintHistogramThread’: bindexhist.c:372:13: warning: variable ‘skip’ set but not used [-Wunused-but-set-variable] 372 | int skip; | ^~~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o ../bfast/MatchesReadInputFiles.o ../bfast/MatchesReadInputFiles.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o bmfmerge.o bmfmerge.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o ../bfast/aflib.o ../bfast/aflib.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o brepeat.o brepeat.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o btestindexes.o btestindexes.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o ../bfast/BError.o ../bfast/BError.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o ../bfast/BLib.o ../bfast/BLib.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o ../bfast/RGIndex.o ../bfast/RGIndex.c ../bfast/RGIndex.c: In function ‘RGIndexCreateHelper’: ../bfast/RGIndex.c:463:31: warning: variable ‘keyEndPos’ set but not used [-Wunused-but-set-variable] 463 | uint32_t keyStartPos, keyEndPos; | ^~~~~~~~~ ../bfast/RGIndex.c: In function ‘RGIndexCompareContigPos’: ../bfast/RGIndex.c:2428:25: warning: variable ‘length’ set but not used [-Wunused-but-set-variable] 2428 | int32_t length; | ^~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o ../bfast/RGBinary.o ../bfast/RGBinary.c ../bfast/RGBinary.c: In function ‘RGBinaryReadBinaryHeader’: ../bfast/RGBinary.c:260:17: warning: variable ‘numCharsPerByte’ set but not used [-Wunused-but-set-variable] 260 | int32_t numCharsPerByte; | ^~~~~~~~~~~~~~~ ../bfast/RGBinary.c: In function ‘RGBinaryWriteBinaryHeader’: ../bfast/RGBinary.c:387:17: warning: variable ‘numCharsPerByte’ set but not used [-Wunused-but-set-variable] 387 | int32_t numCharsPerByte; | ^~~~~~~~~~~~~~~ ../bfast/RGBinary.c: In function ‘RGBinaryWriteBinary’: ../bfast/RGBinary.c:421:17: warning: variable ‘numCharsPerByte’ set but not used [-Wunused-but-set-variable] 421 | int32_t numCharsPerByte; | ^~~~~~~~~~~~~~~ ../bfast/RGBinary.c: In function ‘RGBinaryGetFourBit’: ../bfast/RGBinary.c:820:14: warning: variable ‘curChar’ set but not used [-Wunused-but-set-variable] 820 | char curChar; | ^~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o ../bfast/RGRanges.o ../bfast/RGRanges.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o ../bfast/AlignedRead.o ../bfast/AlignedRead.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o ../bfast/RGMatch.o ../bfast/RGMatch.c ../bfast/RGMatch.c: In function ‘RGMatchRead’: ../bfast/RGMatch.c:23:25: warning: passing argument 1 of ‘feof’ from incompatible pointer type [-Wincompatible-pointer-types] 23 | if(feof(fp) != 0) { | ^~ | | | gzFile {aka struct gzFile_s *} In file included from ../bfast/RGMatch.c:2: /usr/include/stdio.h:846:24: note: expected ‘FILE *’ but argument is of type ‘gzFile’ {aka ‘struct gzFile_s *’} 846 | extern int feof (FILE *__stream) __THROW __wur; | ~~~~~~^~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o ../bfast/AlignedEnd.o ../bfast/AlignedEnd.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o ../bfast/AlignedReadConvert.o ../bfast/AlignedReadConvert.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o ../bfast/AlignedEntry.o ../bfast/AlignedEntry.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o bgeneratereads ../bfast/BError.o ../bfast/RGIndexExons.o ../bfast/RGIndex.o ../bfast/BLib.o ../bfast/RGBinary.o ../bfast/RGMatch.o ../bfast/RGRanges.o SimRead.o bgeneratereads.o -lpthread -lm -lbz2 -lz make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o bindexdist ../bfast/BError.o ../bfast/RGIndexExons.o ../bfast/RGIndex.o ../bfast/BLib.o ../bfast/RGBinary.o ../bfast/RGMatch.o ../bfast/RGRanges.o ../bfast/RGReads.o bindexdist.o -lpthread -lm -lbz2 -lz make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o bindexhist ../bfast/BError.o ../bfast/RGIndexExons.o ../bfast/RGIndex.o ../bfast/BLib.o ../bfast/RGBinary.o ../bfast/RGMatch.o ../bfast/RGRanges.o ../bfast/RGReads.o bindexhist.o -lpthread -lm -lbz2 -lz make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o brepeat ../bfast/BError.o ../bfast/RGIndexExons.o ../bfast/RGIndex.o ../bfast/BLib.o ../bfast/RGBinary.o ../bfast/RGMatch.o ../bfast/RGRanges.o brepeat.o -lpthread -lm -lbz2 -lz make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o bmfmerge ../bfast/BError.o ../bfast/RGIndexExons.o ../bfast/RGIndex.o ../bfast/BLib.o ../bfast/RGBinary.o ../bfast/RGRanges.o ../bfast/RGReads.o ../bfast/RGMatch.o ../bfast/RGMatches.o ../bfast/MatchesReadInputFiles.o ../bfast/aflib.o bmfmerge.o -lpthread -lm -lbz2 -lz make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o btestindexes ../bfast/RGMatch.o ../bfast/RGRanges.o ../bfast/RGBinary.o ../bfast/RGIndex.o ../bfast/RGIndexAccuracy.o ../bfast/BError.o ../bfast/BLib.o btestindexes.o -lpthread -lm -lbz2 -lz make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o balignmentscoredistribution ../bfast/BError.o ../bfast/RGIndex.o ../bfast/BLib.o ../bfast/RGBinary.o ../bfast/RGRanges.o ../bfast/RGMatch.o ../bfast/AlignedRead.o ../bfast/AlignedReadConvert.o ../bfast/AlignedEnd.o ../bfast/AlignedEntry.o balignmentscoredistribution.o -lpthread -lm -lbz2 -lz make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o bevalsim ../bfast/BError.o ../bfast/RGIndexExons.o ../bfast/RGIndex.o ../bfast/BLib.o ../bfast/RGBinary.o ../bfast/RGRanges.o ../bfast/RGMatches.o ../bfast/RGMatch.o ../bfast/AlignedRead.o ../bfast/AlignedEnd.o ../bfast/AlignedEntry.o bevalsim.o -lpthread -lm -lbz2 -lz make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o balignsim SimRead.o ../bfast/BError.o ../bfast/RGIndexExons.o ../bfast/RGIndex.o ../bfast/BLib.o ../bfast/RGBinary.o ../bfast/RGMatch.o ../bfast/RGMatches.o ../bfast/RGRanges.o ../bfast/AlignedRead.o ../bfast/AlignedEnd.o ../bfast/RGIndexAccuracy.o ../bfast/AlignedEntry.o ../bfast/RunLocalAlign.o ../bfast/ScoringMatrix.o ../bfast/Align.o ../bfast/AlignColorSpace.o ../bfast/AlignNTSpace.o ../bfast/AlignMatrix.o balignsim.o -lpthread -lm -lbz2 -lz make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' Making all in scripts make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/scripts' gcc -DHAVE_CONFIG_H -I. -I.. -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -c -o solid2fastq.o solid2fastq.c make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/scripts' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/scripts' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o solid2fastq ../bfast/BError.o ../bfast/RGIndex.o ../bfast/BLib.o ../bfast/RGBinary.o ../bfast/RGRanges.o ../bfast/RGMatch.o ../bfast/aflib.o solid2fastq.o -lpthread -lm -lbz2 -lz make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/scripts' Making all in tests make[2]: Nothing to be done for 'all'. make[2]: Nothing to be done for 'all-am'. + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.YoYvXP + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.s390x '!=' / ']' + rm -rf /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.s390x ++ dirname /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.s390x + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.s390x + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd bfast-0.7.0a + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.s390x 'INSTALL=/usr/bin/install -p' Making install in bfast make[1]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -fgnu89-inline -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -o bfast AlignedEnd.o AlignedEntry.o AlignedRead.o AlignedReadConvert.o BError.o BLib.o RGBinary.o RGIndex.o RGIndexAccuracy.o RGIndexExons.o RGIndexLayout.o RGMatch.o RGMatches.o RGRanges.o RGReads.o ScoringMatrix.o Align.o AlignNTSpace.o AlignColorSpace.o AlignMatrix.o MatchesReadInputFiles.o RunMatch.o RunLocalAlign.o RunPostProcess.o RunAlign.o BfastFasta2BRG.o BfastIndex.o BfastMatch.o BfastLocalAlign.o BfastPostProcess.o BfastBAFConvert.o BfastHeader.o BfastBMFConvert.o BfastBRG2Fasta.o BfastAlign.o aflib.o Main.o -lpthread -lm -lbz2 -lz make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.s390x/usr/bin' /usr/bin/install -p bfast '/builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.s390x/usr/bin' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' make[1]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/bfast' Making install in butil make[1]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/butil' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.s390x/usr/bin' /usr/bin/install -p balignmentscoredistribution balignsim bevalsim bgeneratereads bindexdist bindexhist bmfmerge brepeat btestindexes '/builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.s390x/usr/bin' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' make[1]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/butil' Making install in scripts make[1]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/scripts' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/scripts' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.s390x/usr/bin' /usr/bin/install -p solid2fastq '/builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.s390x/usr/bin' /usr/bin/mkdir -p '/builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.s390x/usr/bin' /usr/bin/install -p bfast.resubmit.pl bfast.submit.pl ill2fastq.pl '/builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.s390x/usr/bin' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/scripts' make[1]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/scripts' Making install in tests make[1]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/tests' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a/tests' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/tests' make[1]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a/tests' make[1]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a' make[2]: Entering directory '/builddir/build/BUILD/bfast-0.7.0a' make[2]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.s390x/usr/share/doc/bfast' /usr/bin/install -p -m 644 LICENSE manual/bfast-book.pdf '/builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.s390x/usr/share/doc/bfast' make[2]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a' make[1]: Leaving directory '/builddir/build/BUILD/bfast-0.7.0a' + rm /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.s390x//usr/share/doc/bfast/LICENSE + rm /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.s390x//usr/share/doc/bfast/bfast-book.pdf + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 0.7.0a-32.fc40 --unique-debug-suffix -0.7.0a-32.fc40.s390x --unique-debug-src-base bfast-0.7.0a-32.fc40.s390x --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/bfast-0.7.0a find-debuginfo: starting Extracting debug info from 11 files DWARF-compressing 11 files sepdebugcrcfix: Updated 11 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/bfast-0.7.0a-32.fc40.s390x 1563 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: bfast-0.7.0a-32.fc40.s390x Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.XH7CFV + umask 022 + cd /builddir/build/BUILD + cd bfast-0.7.0a + DOCDIR=/builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.s390x/usr/share/doc/bfast + export LC_ALL= + LC_ALL= + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.s390x/usr/share/doc/bfast + cp -pr /builddir/build/BUILD/bfast-0.7.0a/AUTHORS /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.s390x/usr/share/doc/bfast + cp -pr /builddir/build/BUILD/bfast-0.7.0a/ChangeLog /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.s390x/usr/share/doc/bfast + cp -pr /builddir/build/BUILD/bfast-0.7.0a/NEWS /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.s390x/usr/share/doc/bfast + cp -pr /builddir/build/BUILD/bfast-0.7.0a/README /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.s390x/usr/share/doc/bfast + cp -pr /builddir/build/BUILD/bfast-0.7.0a/manual/bfast-book.pdf /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.s390x/usr/share/doc/bfast + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.A8ohF2 + umask 022 + cd /builddir/build/BUILD + cd bfast-0.7.0a + LICENSEDIR=/builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.s390x/usr/share/licenses/bfast + export LC_ALL= + LC_ALL= + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.s390x/usr/share/licenses/bfast + cp -pr /builddir/build/BUILD/bfast-0.7.0a/LICENSE /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.s390x/usr/share/licenses/bfast + RPM_EC=0 ++ jobs -p + exit 0 Provides: bfast = 0.7.0a-32.fc40 bfast(s390-64) = 0.7.0a-32.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/perl libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.2)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2)(64bit) libm.so.6(GLIBC_2.29)(64bit) libz.so.1()(64bit) perl(Cwd) perl(Data::Dumper) perl(File::Path) perl(Getopt::Long) perl(Getopt::Std) perl(Pod::Usage) perl(XML::Simple) perl(constant) perl(strict) perl(warnings) rtld(GNU_HASH) Processing files: bfast-debugsource-0.7.0a-32.fc40.s390x Provides: bfast-debugsource = 0.7.0a-32.fc40 bfast-debugsource(s390-64) = 0.7.0a-32.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: bfast-debuginfo-0.7.0a-32.fc40.s390x Provides: bfast-debuginfo = 0.7.0a-32.fc40 bfast-debuginfo(s390-64) = 0.7.0a-32.fc40 debuginfo(build-id) = 012767c0f8c297fe46706f1d49f15cf9e978f156 debuginfo(build-id) = 1770f614d4e0a7f0b27fb49d65ed3c7720b6542a debuginfo(build-id) = 25a71ab7ccfcf93e87143837efaa88aea9e7cea3 debuginfo(build-id) = 4673b7fd004ac0406b4c7b83f08714ba239456f4 debuginfo(build-id) = 57d8d798e53f386643ad628018e9c2c9b512ccc3 debuginfo(build-id) = 685fe297709f1b461465e1e0156ee8089fc7dc6d debuginfo(build-id) = 80861141945f8a3efeeb6875534afb2bd8476edc debuginfo(build-id) = 828ba0d41fa7b53b90e816737f84ab0ebd275c1a debuginfo(build-id) = 8684ce4c33f86a204f9af9af4961f7e54abcb45f debuginfo(build-id) = 93106590eb31c98640e4cbe717082fd818da9da2 debuginfo(build-id) = e1e7f0cebb1415ac170c22fe953046c384b0fa4f Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: bfast-debugsource(s390-64) = 0.7.0a-32.fc40 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.s390x Wrote: /builddir/build/RPMS/bfast-0.7.0a-32.fc40.s390x.rpm Wrote: /builddir/build/RPMS/bfast-debuginfo-0.7.0a-32.fc40.s390x.rpm Wrote: /builddir/build/RPMS/bfast-debugsource-0.7.0a-32.fc40.s390x.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.oLAF73 + umask 022 + cd /builddir/build/BUILD + cd bfast-0.7.0a + /usr/bin/rm -rf /builddir/build/BUILDROOT/bfast-0.7.0a-32.fc40.s390x + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.WlwY2u + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/bfast-0.7.0a-SPECPARTS + rm -rf bfast-0.7.0a bfast-0.7.0a.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: %patchN is deprecated (1 usages found), use %patch N (or %patch -P N) Finish: rpmbuild bfast-0.7.0a-32.fc40.src.rpm Finish: build phase for bfast-0.7.0a-32.fc40.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-s390x-1694931491.040946/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-s390x-1694931491.040946/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-s390x-1694931491.040946/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/bfast-0.7.0a-32.fc40.src.rpm) Config(child) 0 minutes 53 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "bfast", "epoch": null, "version": "0.7.0a", "release": "32.fc40", "arch": "s390x" }, { "name": "bfast-debugsource", "epoch": null, "version": "0.7.0a", "release": "32.fc40", "arch": "s390x" }, { "name": "bfast", "epoch": null, "version": "0.7.0a", "release": "32.fc40", "arch": "src" }, { "name": "bfast-debuginfo", "epoch": null, "version": "0.7.0a", "release": "32.fc40", "arch": "s390x" } ] } RPMResults finished