Warning: Permanently added '128.168.135.235' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6408261-fedora-rawhide-s390x --chroot fedora-rawhide-s390x


Version: 0.69
PID: 5781
Logging PID: 5782
Task:
{'appstream': False,
 'background': True,
 'build_id': 6408261,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-s390x',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '9a1c29996af7c4c77ddea2c5f9443e30fa48ef01',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/samtools',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'samtools',
 'package_version': '1.15.1-3',
 'project_dirname': 'zlib-ng-compat-mpb',
 'project_name': 'zlib-ng-compat-mpb',
 'project_owner': 'tuliom',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/tuliom/zlib-ng-compat-mpb/fedora-rawhide-s390x/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None}],
 'sandbox': 'tuliom/zlib-ng-compat-mpb--tuliom',
 'source_json': {},
 'source_type': None,
 'submitter': 'tuliom',
 'tags': [],
 'task_id': '6408261-fedora-rawhide-s390x',
 'timeout': 115200,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/samtools /var/lib/copr-rpmbuild/workspace/workdir-5j481x1i/samtools --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/samtools', '/var/lib/copr-rpmbuild/workspace/workdir-5j481x1i/samtools', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-5j481x1i/samtools'...

Running: git checkout 9a1c29996af7c4c77ddea2c5f9443e30fa48ef01 --

cmd: ['git', 'checkout', '9a1c29996af7c4c77ddea2c5f9443e30fa48ef01', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-5j481x1i/samtools
rc: 0
stdout: 
stderr: Note: switching to '9a1c29996af7c4c77ddea2c5f9443e30fa48ef01'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 9a1c299 automatic import of samtools

Running: copr-distgit-client sources
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated

cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-5j481x1i/samtools
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading samtools-1.15.1.tar.bz2
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o samtools-1.15.1.tar.bz2 --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/tuliom/zlib-ng-compat-mpb/samtools/samtools-1.15.1.tar.bz2/md5/b71d1aa1de9749773b1a04bf54281ca0/samtools-1.15.1.tar.bz2
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 7648k  100 7648k    0     0  1064k      0  0:00:07  0:00:07 --:--:-- 1923k
INFO: Reading stdout from command: md5sum samtools-1.15.1.tar.bz2

Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-5j481x1i/samtools/samtools.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-5j481x1i/samtools --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1695090297.690834 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.1.1 starting (python version = 3.11.3, NVR = mock-5.1.1-1.fc38)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-5j481x1i/samtools/samtools.spec)  Config(fedora-rawhide-s390x)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.1.1
INFO: Mock Version: 5.1.1
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1695090297.690834/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-s390x-bootstrap-1695090297.690834/root
INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount
INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/e9b44bbd1d17ea82ed1e0b70d4b6605c8df9a8e45d59034bf307f8619d27a60f/merged
INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/e9b44bbd1d17ea82ed1e0b70d4b6605c8df9a8e45d59034bf307f8619d27a60f/merged) with podman image umount
INFO: Package manager dnf detected and used (fallback)
INFO: Bootstrap image not marked ready
Start(bootstrap): installing dnf tooling
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                 822 kB/s | 5.7 MB     00:07    
fedora                                          4.1 MB/s |  63 MB     00:15    
Last metadata expiration check: 0:00:01 ago on Tue Sep 19 02:25:41 2023.
Package python3-dnf-4.16.2-4.fc40.noarch is already installed.
Dependencies resolved.
================================================================================
 Package                      Arch       Version               Repository  Size
================================================================================
Installing:
 python3-dnf-plugins-core     noarch     4.4.2-1.fc39          fedora     293 k
Installing dependencies:
 dbus-libs                    s390x      1:1.14.10-1.fc40      fedora     159 k
 python3-dateutil             noarch     1:2.8.2-10.fc39       fedora     355 k
 python3-dbus                 s390x      1.3.2-4.fc39          fedora     157 k
 python3-distro               noarch     1.8.0-6.fc39          fedora      49 k
 python3-six                  noarch     1.16.0-12.fc39        fedora      41 k
 python3-systemd              s390x      235-5.fc39            fedora     106 k

Transaction Summary
================================================================================
Install  7 Packages

Total download size: 1.1 M
Installed size: 3.5 M
Downloading Packages:
(1/7): python3-dbus-1.3.2-4.fc39.s390x.rpm       31 kB/s | 157 kB     00:05    
(2/7): dbus-libs-1.14.10-1.fc40.s390x.rpm        32 kB/s | 159 kB     00:05    
(3/7): python3-dateutil-2.8.2-10.fc39.noarch.rp  71 kB/s | 355 kB     00:05    
(4/7): python3-six-1.16.0-12.fc39.noarch.rpm    225 kB/s |  41 kB     00:00    
(5/7): python3-distro-1.8.0-6.fc39.noarch.rpm   260 kB/s |  49 kB     00:00    
(6/7): python3-dnf-plugins-core-4.4.2-1.fc39.no 1.1 MB/s | 293 kB     00:00    
(7/7): python3-systemd-235-5.fc39.s390x.rpm     460 kB/s | 106 kB     00:00    
--------------------------------------------------------------------------------
Total                                           201 kB/s | 1.1 MB     00:05     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : python3-systemd-235-5.fc39.s390x                       1/7 
  Installing       : python3-six-1.16.0-12.fc39.noarch                      2/7 
  Installing       : python3-dateutil-1:2.8.2-10.fc39.noarch                3/7 
  Installing       : python3-distro-1.8.0-6.fc39.noarch                     4/7 
  Installing       : dbus-libs-1:1.14.10-1.fc40.s390x                       5/7 
  Installing       : python3-dbus-1.3.2-4.fc39.s390x                        6/7 
  Installing       : python3-dnf-plugins-core-4.4.2-1.fc39.noarch           7/7 
  Running scriptlet: python3-dnf-plugins-core-4.4.2-1.fc39.noarch           7/7 
  Verifying        : dbus-libs-1:1.14.10-1.fc40.s390x                       1/7 
  Verifying        : python3-dateutil-1:2.8.2-10.fc39.noarch                2/7 
  Verifying        : python3-dbus-1.3.2-4.fc39.s390x                        3/7 
  Verifying        : python3-distro-1.8.0-6.fc39.noarch                     4/7 
  Verifying        : python3-dnf-plugins-core-4.4.2-1.fc39.noarch           5/7 
  Verifying        : python3-six-1.16.0-12.fc39.noarch                      6/7 
  Verifying        : python3-systemd-235-5.fc39.s390x                       7/7 

Installed:
  dbus-libs-1:1.14.10-1.fc40.s390x                                              
  python3-dateutil-1:2.8.2-10.fc39.noarch                                       
  python3-dbus-1.3.2-4.fc39.s390x                                               
  python3-distro-1.8.0-6.fc39.noarch                                            
  python3-dnf-plugins-core-4.4.2-1.fc39.noarch                                  
  python3-six-1.16.0-12.fc39.noarch                                             
  python3-systemd-235-5.fc39.s390x                                              

Complete!
Finish(bootstrap): installing dnf tooling
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1695090297.690834/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf detected and used (direct choice)
Start: installing minimal buildroot with dnf
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                 544 kB/s | 5.7 MB     00:10    
fedora                                          3.0 MB/s |  63 MB     00:20    
Last metadata expiration check: 0:00:01 ago on Tue Sep 19 02:26:53 2023.
Dependencies resolved.
================================================================================
 Package                      Arch   Version                    Repo       Size
================================================================================
Installing group/module packages:
 bash                         s390x  5.2.15-5.fc39              fedora    1.8 M
 bzip2                        s390x  1.0.8-16.fc39              fedora     53 k
 coreutils                    s390x  9.4-1.fc40                 fedora    1.2 M
 cpio                         s390x  2.14-4.fc39                fedora    283 k
 diffutils                    s390x  3.10-3.fc39                fedora    407 k
 fedora-release-common        noarch 40-0.7                     fedora     18 k
 findutils                    s390x  1:4.9.0-6.fc40             fedora    497 k
 gawk                         s390x  5.2.2-2.fc39               fedora    1.1 M
 glibc-minimal-langpack       s390x  2.38.9000-8.fc40           copr_base  73 k
 grep                         s390x  3.11-5.fc40                fedora    305 k
 gzip                         s390x  1.12-6.fc39                fedora    173 k
 info                         s390x  7.0.3-3.fc39               fedora    192 k
 patch                        s390x  2.7.6-22.fc39              fedora    134 k
 redhat-rpm-config            noarch 270-1.fc40                 copr_base  74 k
 rpm-build                    s390x  4.18.99-1.fc40             copr_base  71 k
 sed                          s390x  4.8-14.fc39                fedora    309 k
 shadow-utils                 s390x  2:4.14.0-1.fc40            fedora    1.3 M
 tar                          s390x  2:1.35-2.fc40              fedora    874 k
 unzip                        s390x  6.0-62.fc39                fedora    194 k
 util-linux                   s390x  2.39.2-1.fc40              copr_base 1.1 M
 which                        s390x  2.21-40.fc39               fedora     43 k
 xz                           s390x  5.4.4-1.fc39               fedora    557 k
Installing dependencies:
 alternatives                 s390x  1.25-1.fc39                fedora     39 k
 ansible-srpm-macros          noarch 1-11.fc39                  fedora     21 k
 audit-libs                   s390x  3.1.2-4.fc40               fedora    121 k
 authselect                   s390x  1.4.2-3.fc39               fedora    144 k
 authselect-libs              s390x  1.4.2-3.fc39               fedora    247 k
 basesystem                   noarch 11-18.fc39                 fedora    7.2 k
 binutils                     s390x  2.41-5.fc40                copr_base 5.9 M
 binutils-gold                s390x  2.41-5.fc40                copr_base 993 k
 bzip2-libs                   s390x  1.0.8-16.fc39              fedora     46 k
 ca-certificates              noarch 2023.2.60_v7.0.306-3.fc40  fedora    837 k
 coreutils-common             s390x  9.4-1.fc40                 fedora    2.1 M
 cracklib                     s390x  2.9.11-2.fc40              copr_base  84 k
 crypto-policies              noarch 20230731-1.git5ed06e0.fc39 fedora     99 k
 curl                         s390x  8.3.0-1.fc40               copr_base 354 k
 cyrus-sasl-lib               s390x  2.1.28-11.fc40             copr_base 820 k
 debugedit                    s390x  5.0-10.fc39                fedora     81 k
 dwz                          s390x  0.15-3.fc39                fedora    144 k
 ed                           s390x  1.19-4.fc39                fedora     80 k
 efi-srpm-macros              noarch 5-9.fc39                   fedora     22 k
 elfutils                     s390x  0.189-6.fc40               copr_base 555 k
 elfutils-debuginfod-client   s390x  0.189-6.fc40               copr_base  39 k
 elfutils-default-yama-scope  noarch 0.189-6.fc40               copr_base  14 k
 elfutils-libelf              s390x  0.189-6.fc40               copr_base 201 k
 elfutils-libs                s390x  0.189-6.fc40               copr_base 275 k
 fedora-gpg-keys              noarch 40-0.1                     fedora    130 k
 fedora-release               noarch 40-0.7                     fedora    8.0 k
 fedora-release-identity-basic
                              noarch 40-0.7                     fedora    8.8 k
 fedora-repos                 noarch 40-0.1                     fedora    9.4 k
 fedora-repos-rawhide         noarch 40-0.1                     fedora    9.0 k
 file                         s390x  5.45-1.fc40                copr_base  50 k
 file-libs                    s390x  5.45-1.fc40                copr_base 770 k
 filesystem                   s390x  3.18-6.fc39                fedora    1.1 M
 fonts-srpm-macros            noarch 1:2.0.5-12.fc39            fedora     26 k
 forge-srpm-macros            noarch 0.1.0-1.fc40               fedora     18 k
 fpc-srpm-macros              noarch 1.3-8.fc39                 fedora    7.4 k
 gdb-minimal                  s390x  13.2-8.fc40                fedora    4.0 M
 gdbm-libs                    s390x  1:1.23-4.fc39              fedora     58 k
 ghc-srpm-macros              noarch 1.6.1-2.fc39               fedora    7.8 k
 glibc                        s390x  2.38.9000-8.fc40           copr_base 1.8 M
 glibc-common                 s390x  2.38.9000-8.fc40           copr_base 368 k
 glibc-gconv-extra            s390x  2.38.9000-8.fc40           copr_base 1.6 M
 gmp                          s390x  1:6.2.1-5.fc39             fedora    325 k
 gnat-srpm-macros             noarch 6-3.fc39                   fedora    8.8 k
 go-srpm-macros               noarch 3.2.0-7.fc40               fedora     27 k
 jansson                      s390x  2.13.1-7.fc39              fedora     44 k
 kernel-srpm-macros           noarch 1.0-20.fc39                fedora     10 k
 keyutils-libs                s390x  1.6.1-7.fc39               fedora     31 k
 krb5-libs                    s390x  1.21.2-1.fc40              fedora    780 k
 libacl                       s390x  2.3.1-9.fc40               fedora     24 k
 libarchive                   s390x  3.7.2-1.fc40               copr_base 441 k
 libattr                      s390x  2.5.1-9.fc40               fedora     18 k
 libblkid                     s390x  2.39.2-1.fc40              copr_base 121 k
 libbrotli                    s390x  1.1.0-1.fc40               fedora    379 k
 libcap                       s390x  2.48-7.fc39                fedora     69 k
 libcap-ng                    s390x  0.8.3-8.fc40               fedora     32 k
 libcom_err                   s390x  1.47.0-2.fc39              fedora     26 k
 libcurl                      s390x  8.3.0-1.fc40               copr_base 362 k
 libdb                        s390x  5.3.28-58.fc40             copr_base 775 k
 libeconf                     s390x  0.5.2-1.fc40               fedora     32 k
 libevent                     s390x  2.1.12-9.fc39              fedora    260 k
 libfdisk                     s390x  2.39.2-1.fc40              copr_base 166 k
 libffi                       s390x  3.4.4-4.fc39               fedora     36 k
 libgcc                       s390x  13.2.1-1.fc40              copr_base  82 k
 libgomp                      s390x  13.2.1-1.fc40              copr_base 323 k
 libidn2                      s390x  2.3.4-3.fc39               fedora    118 k
 libmount                     s390x  2.39.2-1.fc40              copr_base 159 k
 libnghttp2                   s390x  1.56.0-1.fc40              copr_base  78 k
 libnsl2                      s390x  2.0.0-6.fc39               fedora     30 k
 libpkgconf                   s390x  1.9.5-2.fc39               fedora     38 k
 libpsl                       s390x  0.21.2-4.fc39              fedora     63 k
 libpwquality                 s390x  1.4.5-6.fc39               fedora    121 k
 libselinux                   s390x  3.5-5.fc39                 fedora     91 k
 libsemanage                  s390x  3.5-4.fc39                 fedora    122 k
 libsepol                     s390x  3.5-2.fc39                 fedora    330 k
 libsigsegv                   s390x  2.14-5.fc39                fedora     27 k
 libsmartcols                 s390x  2.39.2-1.fc40              copr_base  70 k
 libssh                       s390x  0.10.5-2.fc40              copr_base 209 k
 libssh-config                noarch 0.10.5-2.fc40              copr_base 9.6 k
 libstdc++                    s390x  13.2.1-1.fc40              copr_base 949 k
 libtasn1                     s390x  4.19.0-3.fc39              fedora     77 k
 libtirpc                     s390x  1.3.3-1.rc2.fc39           fedora     95 k
 libunistring                 s390x  1.1-5.fc40                 fedora    556 k
 libutempter                  s390x  1.2.1-10.fc39              fedora     26 k
 libuuid                      s390x  2.39.2-1.fc40              copr_base  29 k
 libverto                     s390x  0.3.2-6.fc39               fedora     21 k
 libxcrypt                    s390x  4.4.36-2.fc39              fedora    124 k
 libxml2                      s390x  2.11.5-1.fc40              copr_base 711 k
 libzstd                      s390x  1.5.5-4.fc40               copr_base 343 k
 lua-libs                     s390x  5.4.6-3.fc39               fedora    142 k
 lua-srpm-macros              noarch 1-9.fc39                   fedora    8.6 k
 lz4-libs                     s390x  1.9.4-4.fc39               fedora     81 k
 mpfr                         s390x  4.2.0-3.fc39               fedora    298 k
 ncurses-base                 noarch 6.4-7.20230520.fc40        fedora     88 k
 ncurses-libs                 s390x  6.4-7.20230520.fc40        fedora    361 k
 ocaml-srpm-macros            noarch 8-2.fc39                   fedora     14 k
 openblas-srpm-macros         noarch 2-14.fc39                  fedora    7.5 k
 openldap                     s390x  2.6.6-1.fc39               fedora    262 k
 openssl-libs                 s390x  1:3.1.1-4.fc40             copr_base 1.9 M
 p11-kit                      s390x  0.25.0-2.fc39              fedora    507 k
 p11-kit-trust                s390x  0.25.0-2.fc39              fedora    141 k
 package-notes-srpm-macros    noarch 0.5-9.fc39                 fedora     11 k
 pam                          s390x  1.5.3-2.fc39               fedora    558 k
 pam-libs                     s390x  1.5.3-2.fc39               fedora     59 k
 pcre2                        s390x  10.42-1.fc39.2             fedora    250 k
 pcre2-syntax                 noarch 10.42-1.fc39.2             fedora    143 k
 perl-srpm-macros             noarch 1-51.fc39                  fedora    8.0 k
 pkgconf                      s390x  1.9.5-2.fc39               fedora     43 k
 pkgconf-m4                   noarch 1.9.5-2.fc39               fedora     14 k
 pkgconf-pkg-config           s390x  1.9.5-2.fc39               fedora    9.6 k
 popt                         s390x  1.19-3.fc39                fedora     69 k
 publicsuffix-list-dafsa      noarch 20230812-1.fc40            fedora     57 k
 pyproject-srpm-macros        noarch 1.9.0-2.fc39               fedora     14 k
 python-srpm-macros           noarch 3.12-4.fc40                fedora     25 k
 qt5-srpm-macros              noarch 5.15.10-2.fc39             fedora    8.3 k
 qt6-srpm-macros              noarch 6.5.2-2.fc39               fedora    9.2 k
 readline                     s390x  8.2-4.fc39                 fedora    229 k
 rpm                          s390x  4.18.99-1.fc40             copr_base 510 k
 rpm-build-libs               s390x  4.18.99-1.fc40             copr_base  98 k
 rpm-libs                     s390x  4.18.99-1.fc40             copr_base 323 k
 rpm-sequoia                  s390x  1.5.0-1.fc40               fedora    1.0 M
 rust-srpm-macros             noarch 24-5.fc40                  fedora     12 k
 setup                        noarch 2.14.4-1.fc39              fedora    154 k
 sqlite-libs                  s390x  3.43.1-1.fc40              fedora    737 k
 systemd-libs                 s390x  254.1-2.fc40               fedora    696 k
 tzdata                       noarch 2023c-3.fc40               fedora    718 k
 util-linux-core              s390x  2.39.2-1.fc40              copr_base 483 k
 xxhash-libs                  s390x  0.8.2-1.fc39               fedora     37 k
 xz-libs                      s390x  5.4.4-1.fc39               fedora    114 k
 zip                          s390x  3.0-38.fc39                fedora    283 k
 zlib-ng-compat               s390x  2.1.3-3.fc40               copr_base  71 k
 zstd                         s390x  1.5.5-4.fc40               copr_base 506 k
Installing Groups:
 Buildsystem building group                                                    

Transaction Summary
================================================================================
Install  153 Packages

Total download size: 53 M
Installed size: 181 M
Downloading Packages:
(1/153): cracklib-2.9.11-2.fc40.s390x.rpm       2.7 MB/s |  84 kB     00:00    
(2/153): binutils-gold-2.41-5.fc40.s390x.rpm     13 MB/s | 993 kB     00:00    
(3/153): curl-8.3.0-1.fc40.s390x.rpm            7.6 MB/s | 354 kB     00:00    
(4/153): elfutils-0.189-6.fc40.s390x.rpm         35 MB/s | 555 kB     00:00    
(5/153): cyrus-sasl-lib-2.1.28-11.fc40.s390x.rp  45 MB/s | 820 kB     00:00    
(6/153): elfutils-debuginfod-client-0.189-6.fc4 6.3 MB/s |  39 kB     00:00    
(7/153): elfutils-default-yama-scope-0.189-6.fc 2.4 MB/s |  14 kB     00:00    
(8/153): elfutils-libs-0.189-6.fc40.s390x.rpm    26 MB/s | 275 kB     00:00    
(9/153): elfutils-libelf-0.189-6.fc40.s390x.rpm  12 MB/s | 201 kB     00:00    
(10/153): file-5.45-1.fc40.s390x.rpm            6.5 MB/s |  50 kB     00:00    
(11/153): file-libs-5.45-1.fc40.s390x.rpm        33 MB/s | 770 kB     00:00    
(12/153): glibc-common-2.38.9000-8.fc40.s390x.r  27 MB/s | 368 kB     00:00    
(13/153): glibc-2.38.9000-8.fc40.s390x.rpm       30 MB/s | 1.8 MB     00:00    
(14/153): glibc-minimal-langpack-2.38.9000-8.fc  11 MB/s |  73 kB     00:00    
(15/153): glibc-gconv-extra-2.38.9000-8.fc40.s3  47 MB/s | 1.6 MB     00:00    
(16/153): libblkid-2.39.2-1.fc40.s390x.rpm       14 MB/s | 121 kB     00:00    
(17/153): libarchive-3.7.2-1.fc40.s390x.rpm      29 MB/s | 441 kB     00:00    
(18/153): libcurl-8.3.0-1.fc40.s390x.rpm         17 MB/s | 362 kB     00:00    
(19/153): libdb-5.3.28-58.fc40.s390x.rpm         31 MB/s | 775 kB     00:00    
(20/153): libfdisk-2.39.2-1.fc40.s390x.rpm       18 MB/s | 166 kB     00:00    
(21/153): libgcc-13.2.1-1.fc40.s390x.rpm         15 MB/s |  82 kB     00:00    
(22/153): binutils-2.41-5.fc40.s390x.rpm         25 MB/s | 5.9 MB     00:00    
(23/153): libgomp-13.2.1-1.fc40.s390x.rpm        27 MB/s | 323 kB     00:00    
(24/153): libmount-2.39.2-1.fc40.s390x.rpm       15 MB/s | 159 kB     00:00    
(25/153): libnghttp2-1.56.0-1.fc40.s390x.rpm     13 MB/s |  78 kB     00:00    
(26/153): libssh-config-0.10.5-2.fc40.noarch.rp 2.6 MB/s | 9.6 kB     00:00    
(27/153): libssh-0.10.5-2.fc40.s390x.rpm         26 MB/s | 209 kB     00:00    
(28/153): libsmartcols-2.39.2-1.fc40.s390x.rpm  4.6 MB/s |  70 kB     00:00    
(29/153): libuuid-2.39.2-1.fc40.s390x.rpm       6.5 MB/s |  29 kB     00:00    
(30/153): libxml2-2.11.5-1.fc40.s390x.rpm        28 MB/s | 711 kB     00:00    
(31/153): libstdc++-13.2.1-1.fc40.s390x.rpm      25 MB/s | 949 kB     00:00    
(32/153): libzstd-1.5.5-4.fc40.s390x.rpm         10 MB/s | 343 kB     00:00    
(33/153): redhat-rpm-config-270-1.fc40.noarch.r 9.2 MB/s |  74 kB     00:00    
(34/153): rpm-4.18.99-1.fc40.s390x.rpm           39 MB/s | 510 kB     00:00    
(35/153): rpm-build-4.18.99-1.fc40.s390x.rpm    8.3 MB/s |  71 kB     00:00    
(36/153): rpm-build-libs-4.18.99-1.fc40.s390x.r 9.9 MB/s |  98 kB     00:00    
(37/153): rpm-libs-4.18.99-1.fc40.s390x.rpm      14 MB/s | 323 kB     00:00    
(38/153): openssl-libs-3.1.1-4.fc40.s390x.rpm    34 MB/s | 1.9 MB     00:00    
(39/153): zlib-ng-compat-2.1.3-3.fc40.s390x.rpm  11 MB/s |  71 kB     00:00    
(40/153): util-linux-core-2.39.2-1.fc40.s390x.r  19 MB/s | 483 kB     00:00    
(41/153): util-linux-2.39.2-1.fc40.s390x.rpm     26 MB/s | 1.1 MB     00:00    
(42/153): zstd-1.5.5-4.fc40.s390x.rpm            34 MB/s | 506 kB     00:00    
(43/153): ansible-srpm-macros-1-11.fc39.noarch.  43 kB/s |  21 kB     00:00    
(44/153): alternatives-1.25-1.fc39.s390x.rpm    7.8 kB/s |  39 kB     00:05    
(45/153): audit-libs-3.1.2-4.fc40.s390x.rpm      24 kB/s | 121 kB     00:05    
(46/153): basesystem-11-18.fc39.noarch.rpm       45 kB/s | 7.2 kB     00:00    
(47/153): authselect-1.4.2-3.fc39.s390x.rpm      30 kB/s | 144 kB     00:04    
(48/153): bzip2-1.0.8-16.fc39.s390x.rpm         154 kB/s |  53 kB     00:00    
(49/153): authselect-libs-1.4.2-3.fc39.s390x.rp 392 kB/s | 247 kB     00:00    
(50/153): bzip2-libs-1.0.8-16.fc39.s390x.rpm    143 kB/s |  46 kB     00:00    
(51/153): bash-5.2.15-5.fc39.s390x.rpm          2.1 MB/s | 1.8 MB     00:00    
(52/153): ca-certificates-2023.2.60_v7.0.306-3. 1.7 MB/s | 837 kB     00:00    
(53/153): cpio-2.14-4.fc39.s390x.rpm            1.5 MB/s | 283 kB     00:00    
(54/153): coreutils-common-9.4-1.fc40.s390x.rpm 6.7 MB/s | 2.1 MB     00:00    
(55/153): crypto-policies-20230731-1.git5ed06e0 601 kB/s |  99 kB     00:00    
(56/153): debugedit-5.0-10.fc39.s390x.rpm       519 kB/s |  81 kB     00:00    
(57/153): diffutils-3.10-3.fc39.s390x.rpm       2.0 MB/s | 407 kB     00:00    
(58/153): dwz-0.15-3.fc39.s390x.rpm             918 kB/s | 144 kB     00:00    
(59/153): efi-srpm-macros-5-9.fc39.noarch.rpm   145 kB/s |  22 kB     00:00    
(60/153): ed-1.19-4.fc39.s390x.rpm              495 kB/s |  80 kB     00:00    
(61/153): fedora-gpg-keys-40-0.1.noarch.rpm     831 kB/s | 130 kB     00:00    
(62/153): fedora-release-40-0.7.noarch.rpm       52 kB/s | 8.0 kB     00:00    
(63/153): fedora-release-common-40-0.7.noarch.r 119 kB/s |  18 kB     00:00    
(64/153): fedora-release-identity-basic-40-0.7.  57 kB/s | 8.8 kB     00:00    
(65/153): fedora-repos-40-0.1.noarch.rpm         61 kB/s | 9.4 kB     00:00    
(66/153): fedora-repos-rawhide-40-0.1.noarch.rp  58 kB/s | 9.0 kB     00:00    
(67/153): filesystem-3.18-6.fc39.s390x.rpm      5.9 MB/s | 1.1 MB     00:00    
(68/153): findutils-4.9.0-6.fc40.s390x.rpm      2.3 MB/s | 497 kB     00:00    
(69/153): fonts-srpm-macros-2.0.5-12.fc39.noarc 172 kB/s |  26 kB     00:00    
(70/153): forge-srpm-macros-0.1.0-1.fc40.noarch 118 kB/s |  18 kB     00:00    
(71/153): fpc-srpm-macros-1.3-8.fc39.noarch.rpm  48 kB/s | 7.4 kB     00:00    
(72/153): gawk-5.2.2-2.fc39.s390x.rpm           3.9 MB/s | 1.1 MB     00:00    
(73/153): coreutils-9.4-1.fc40.s390x.rpm        580 kB/s | 1.2 MB     00:02    
(74/153): gdbm-libs-1.23-4.fc39.s390x.rpm       367 kB/s |  58 kB     00:00    
(75/153): gdb-minimal-13.2-8.fc40.s390x.rpm      12 MB/s | 4.0 MB     00:00    
(76/153): ghc-srpm-macros-1.6.1-2.fc39.noarch.r  49 kB/s | 7.8 kB     00:00    
(77/153): gmp-6.2.1-5.fc39.s390x.rpm            1.7 MB/s | 325 kB     00:00    
(78/153): gnat-srpm-macros-6-3.fc39.noarch.rpm   58 kB/s | 8.8 kB     00:00    
(79/153): go-srpm-macros-3.2.0-7.fc40.noarch.rp 157 kB/s |  27 kB     00:00    
(80/153): gzip-1.12-6.fc39.s390x.rpm            1.1 MB/s | 173 kB     00:00    
(81/153): grep-3.11-5.fc40.s390x.rpm            1.7 MB/s | 305 kB     00:00    
(82/153): jansson-2.13.1-7.fc39.s390x.rpm       286 kB/s |  44 kB     00:00    
(83/153): kernel-srpm-macros-1.0-20.fc39.noarch  68 kB/s |  10 kB     00:00    
(84/153): info-7.0.3-3.fc39.s390x.rpm           616 kB/s | 192 kB     00:00    
(85/153): keyutils-libs-1.6.1-7.fc39.s390x.rpm  202 kB/s |  31 kB     00:00    
(86/153): libacl-2.3.1-9.fc40.s390x.rpm         140 kB/s |  24 kB     00:00    
(87/153): krb5-libs-1.21.2-1.fc40.s390x.rpm     3.4 MB/s | 780 kB     00:00    
(88/153): libattr-2.5.1-9.fc40.s390x.rpm        118 kB/s |  18 kB     00:00    
(89/153): libcap-2.48-7.fc39.s390x.rpm          434 kB/s |  69 kB     00:00    
(90/153): libcap-ng-0.8.3-8.fc40.s390x.rpm      211 kB/s |  32 kB     00:00    
(91/153): libcom_err-1.47.0-2.fc39.s390x.rpm    167 kB/s |  26 kB     00:00    
(92/153): libeconf-0.5.2-1.fc40.s390x.rpm       208 kB/s |  32 kB     00:00    
(93/153): libbrotli-1.1.0-1.fc40.s390x.rpm      864 kB/s | 379 kB     00:00    
(94/153): libevent-2.1.12-9.fc39.s390x.rpm      1.4 MB/s | 260 kB     00:00    
(95/153): libffi-3.4.4-4.fc39.s390x.rpm         232 kB/s |  36 kB     00:00    
(96/153): libnsl2-2.0.0-6.fc39.s390x.rpm        190 kB/s |  30 kB     00:00    
(97/153): libidn2-2.3.4-3.fc39.s390x.rpm        499 kB/s | 118 kB     00:00    
(98/153): libpkgconf-1.9.5-2.fc39.s390x.rpm     248 kB/s |  38 kB     00:00    
(99/153): libpsl-0.21.2-4.fc39.s390x.rpm        398 kB/s |  63 kB     00:00    
(100/153): libselinux-3.5-5.fc39.s390x.rpm      592 kB/s |  91 kB     00:00    
(101/153): libpwquality-1.4.5-6.fc39.s390x.rpm  507 kB/s | 121 kB     00:00    
(102/153): libsemanage-3.5-4.fc39.s390x.rpm     746 kB/s | 122 kB     00:00    
(103/153): libsepol-3.5-2.fc39.s390x.rpm        2.0 MB/s | 330 kB     00:00    
(104/153): libsigsegv-2.14-5.fc39.s390x.rpm     156 kB/s |  27 kB     00:00    
(105/153): libtasn1-4.19.0-3.fc39.s390x.rpm     484 kB/s |  77 kB     00:00    
(106/153): libtirpc-1.3.3-1.rc2.fc39.s390x.rpm  620 kB/s |  95 kB     00:00    
(107/153): libutempter-1.2.1-10.fc39.s390x.rpm  167 kB/s |  26 kB     00:00    
(108/153): libverto-0.3.2-6.fc39.s390x.rpm      136 kB/s |  21 kB     00:00    
(109/153): libxcrypt-4.4.36-2.fc39.s390x.rpm    757 kB/s | 124 kB     00:00    
(110/153): lua-libs-5.4.6-3.fc39.s390x.rpm      913 kB/s | 142 kB     00:00    
(111/153): libunistring-1.1-5.fc40.s390x.rpm    1.1 MB/s | 556 kB     00:00    
(112/153): lua-srpm-macros-1-9.fc39.noarch.rpm   56 kB/s | 8.6 kB     00:00    
(113/153): lz4-libs-1.9.4-4.fc39.s390x.rpm      525 kB/s |  81 kB     00:00    
(114/153): ncurses-base-6.4-7.20230520.fc40.noa 519 kB/s |  88 kB     00:00    
(115/153): ncurses-libs-6.4-7.20230520.fc40.s39 2.2 MB/s | 361 kB     00:00    
(116/153): mpfr-4.2.0-3.fc39.s390x.rpm          929 kB/s | 298 kB     00:00    
(117/153): openblas-srpm-macros-2-14.fc39.noarc  49 kB/s | 7.5 kB     00:00    
(118/153): ocaml-srpm-macros-8-2.fc39.noarch.rp  87 kB/s |  14 kB     00:00    
(119/153): p11-kit-0.25.0-2.fc39.s390x.rpm      3.1 MB/s | 507 kB     00:00    
(120/153): p11-kit-trust-0.25.0-2.fc39.s390x.rp 853 kB/s | 141 kB     00:00    
(121/153): openldap-2.6.6-1.fc39.s390x.rpm      867 kB/s | 262 kB     00:00    
(122/153): package-notes-srpm-macros-0.5-9.fc39  73 kB/s |  11 kB     00:00    
(123/153): pam-1.5.3-2.fc39.s390x.rpm           2.7 MB/s | 558 kB     00:00    
(124/153): pam-libs-1.5.3-2.fc39.s390x.rpm      318 kB/s |  59 kB     00:00    
(125/153): patch-2.7.6-22.fc39.s390x.rpm        862 kB/s | 134 kB     00:00    
(126/153): pcre2-10.42-1.fc39.2.s390x.rpm       1.4 MB/s | 250 kB     00:00    
(127/153): perl-srpm-macros-1-51.fc39.noarch.rp  52 kB/s | 8.0 kB     00:00    
(128/153): pcre2-syntax-10.42-1.fc39.2.noarch.r 612 kB/s | 143 kB     00:00    
(129/153): pkgconf-1.9.5-2.fc39.s390x.rpm       272 kB/s |  43 kB     00:00    
(130/153): pkgconf-m4-1.9.5-2.fc39.noarch.rpm    90 kB/s |  14 kB     00:00    
(131/153): pkgconf-pkg-config-1.9.5-2.fc39.s390  61 kB/s | 9.6 kB     00:00    
(132/153): popt-1.19-3.fc39.s390x.rpm           435 kB/s |  69 kB     00:00    
(133/153): publicsuffix-list-dafsa-20230812-1.f 373 kB/s |  57 kB     00:00    
(134/153): pyproject-srpm-macros-1.9.0-2.fc39.n  87 kB/s |  14 kB     00:00    
(135/153): python-srpm-macros-3.12-4.fc40.noarc 160 kB/s |  25 kB     00:00    
(136/153): qt5-srpm-macros-5.15.10-2.fc39.noarc  54 kB/s | 8.3 kB     00:00    
(137/153): qt6-srpm-macros-6.5.2-2.fc39.noarch.  58 kB/s | 9.2 kB     00:00    
(138/153): readline-8.2-4.fc39.s390x.rpm        1.3 MB/s | 229 kB     00:00    
(139/153): rpm-sequoia-1.5.0-1.fc40.s390x.rpm   5.8 MB/s | 1.0 MB     00:00    
(140/153): rust-srpm-macros-24-5.fc40.noarch.rp  75 kB/s |  12 kB     00:00    
(141/153): sed-4.8-14.fc39.s390x.rpm            1.7 MB/s | 309 kB     00:00    
(142/153): setup-2.14.4-1.fc39.noarch.rpm       994 kB/s | 154 kB     00:00    
(143/153): systemd-libs-254.1-2.fc40.s390x.rpm  4.1 MB/s | 696 kB     00:00    
(144/153): sqlite-libs-3.43.1-1.fc40.s390x.rpm  3.3 MB/s | 737 kB     00:00    
(145/153): tar-1.35-2.fc40.s390x.rpm            5.1 MB/s | 874 kB     00:00    
(146/153): tzdata-2023c-3.fc40.noarch.rpm       3.3 MB/s | 718 kB     00:00    
(147/153): unzip-6.0-62.fc39.s390x.rpm          1.2 MB/s | 194 kB     00:00    
(148/153): which-2.21-40.fc39.s390x.rpm         276 kB/s |  43 kB     00:00    
(149/153): shadow-utils-4.14.0-1.fc40.s390x.rpm 1.7 MB/s | 1.3 MB     00:00    
(150/153): xxhash-libs-0.8.2-1.fc39.s390x.rpm   239 kB/s |  37 kB     00:00    
(151/153): xz-5.4.4-1.fc39.s390x.rpm            2.7 MB/s | 557 kB     00:00    
(152/153): zip-3.0-38.fc39.s390x.rpm            1.8 MB/s | 283 kB     00:00    
(153/153): xz-libs-5.4.4-1.fc39.s390x.rpm       585 kB/s | 114 kB     00:00    
--------------------------------------------------------------------------------
Total                                           3.8 MB/s |  53 MB     00:13     
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0xA15B79CC:
 Userid     : "Fedora (40) <fedora-40-primary@fedoraproject.org>"
 Fingerprint: 115D F9AE F857 853E E844 5D0A 0727 707E A15B 79CC
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary
Key imported successfully
fedora                                          1.6 MB/s | 1.6 kB     00:00    
GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary (0xA15B79CC) is already installed
fedora                                          1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0x18B8E74C:
 Userid     : "Fedora (39) <fedora-39-primary@fedoraproject.org>"
 Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C
 From       : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.18-6.fc39.s390x                           1/1 
  Preparing        :                                                        1/1 
  Installing       : libgcc-13.2.1-1.fc40.s390x                           1/153 
  Running scriptlet: libgcc-13.2.1-1.fc40.s390x                           1/153 
  Installing       : crypto-policies-20230731-1.git5ed06e0.fc39.noarc     2/153 
  Running scriptlet: crypto-policies-20230731-1.git5ed06e0.fc39.noarc     2/153 
  Installing       : tzdata-2023c-3.fc40.noarch                           3/153 
  Installing       : fedora-release-identity-basic-40-0.7.noarch          4/153 
  Installing       : fedora-repos-rawhide-40-0.1.noarch                   5/153 
  Installing       : fedora-gpg-keys-40-0.1.noarch                        6/153 
  Installing       : fedora-repos-40-0.1.noarch                           7/153 
  Installing       : fedora-release-common-40-0.7.noarch                  8/153 
  Installing       : fedora-release-40-0.7.noarch                         9/153 
  Installing       : setup-2.14.4-1.fc39.noarch                          10/153 
warning: /etc/hosts created as /etc/hosts.rpmnew

  Running scriptlet: setup-2.14.4-1.fc39.noarch                          10/153 
  Installing       : filesystem-3.18-6.fc39.s390x                        11/153 
  Installing       : basesystem-11-18.fc39.noarch                        12/153 
  Installing       : rust-srpm-macros-24-5.fc40.noarch                   13/153 
  Installing       : qt6-srpm-macros-6.5.2-2.fc39.noarch                 14/153 
  Installing       : qt5-srpm-macros-5.15.10-2.fc39.noarch               15/153 
  Installing       : pyproject-srpm-macros-1.9.0-2.fc39.noarch           16/153 
  Installing       : publicsuffix-list-dafsa-20230812-1.fc40.noarch      17/153 
  Installing       : pkgconf-m4-1.9.5-2.fc39.noarch                      18/153 
  Installing       : perl-srpm-macros-1-51.fc39.noarch                   19/153 
  Installing       : pcre2-syntax-10.42-1.fc39.2.noarch                  20/153 
  Installing       : package-notes-srpm-macros-0.5-9.fc39.noarch         21/153 
  Installing       : openblas-srpm-macros-2-14.fc39.noarch               22/153 
  Installing       : ocaml-srpm-macros-8-2.fc39.noarch                   23/153 
  Installing       : ncurses-base-6.4-7.20230520.fc40.noarch             24/153 
  Installing       : glibc-gconv-extra-2.38.9000-8.fc40.s390x            25/153 
  Running scriptlet: glibc-gconv-extra-2.38.9000-8.fc40.s390x            25/153 
  Installing       : glibc-minimal-langpack-2.38.9000-8.fc40.s390x       26/153 
  Installing       : glibc-common-2.38.9000-8.fc40.s390x                 27/153 
  Running scriptlet: glibc-2.38.9000-8.fc40.s390x                        28/153 
  Installing       : glibc-2.38.9000-8.fc40.s390x                        28/153 
  Running scriptlet: glibc-2.38.9000-8.fc40.s390x                        28/153 
  Installing       : ncurses-libs-6.4-7.20230520.fc40.s390x              29/153 
  Installing       : bash-5.2.15-5.fc39.s390x                            30/153 
  Running scriptlet: bash-5.2.15-5.fc39.s390x                            30/153 
  Installing       : zlib-ng-compat-2.1.3-3.fc40.s390x                   31/153 
  Installing       : xz-libs-5.4.4-1.fc39.s390x                          32/153 
  Installing       : bzip2-libs-1.0.8-16.fc39.s390x                      33/153 
  Installing       : libstdc++-13.2.1-1.fc40.s390x                       34/153 
  Installing       : libuuid-2.39.2-1.fc40.s390x                         35/153 
  Installing       : libzstd-1.5.5-4.fc40.s390x                          36/153 
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  Verifying        : tar-2:1.35-2.fc40.s390x                            146/153 
  Verifying        : tzdata-2023c-3.fc40.noarch                         147/153 
  Verifying        : unzip-6.0-62.fc39.s390x                            148/153 
  Verifying        : which-2.21-40.fc39.s390x                           149/153 
  Verifying        : xxhash-libs-0.8.2-1.fc39.s390x                     150/153 
  Verifying        : xz-5.4.4-1.fc39.s390x                              151/153 
  Verifying        : xz-libs-5.4.4-1.fc39.s390x                         152/153 
  Verifying        : zip-3.0-38.fc39.s390x                              153/153 

Installed:
  alternatives-1.25-1.fc39.s390x                                                
  ansible-srpm-macros-1-11.fc39.noarch                                          
  audit-libs-3.1.2-4.fc40.s390x                                                 
  authselect-1.4.2-3.fc39.s390x                                                 
  authselect-libs-1.4.2-3.fc39.s390x                                            
  basesystem-11-18.fc39.noarch                                                  
  bash-5.2.15-5.fc39.s390x                                                      
  binutils-2.41-5.fc40.s390x                                                    
  binutils-gold-2.41-5.fc40.s390x                                               
  bzip2-1.0.8-16.fc39.s390x                                                     
  bzip2-libs-1.0.8-16.fc39.s390x                                                
  ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch                              
  coreutils-9.4-1.fc40.s390x                                                    
  coreutils-common-9.4-1.fc40.s390x                                             
  cpio-2.14-4.fc39.s390x                                                        
  cracklib-2.9.11-2.fc40.s390x                                                  
  crypto-policies-20230731-1.git5ed06e0.fc39.noarch                             
  curl-8.3.0-1.fc40.s390x                                                       
  cyrus-sasl-lib-2.1.28-11.fc40.s390x                                           
  debugedit-5.0-10.fc39.s390x                                                   
  diffutils-3.10-3.fc39.s390x                                                   
  dwz-0.15-3.fc39.s390x                                                         
  ed-1.19-4.fc39.s390x                                                          
  efi-srpm-macros-5-9.fc39.noarch                                               
  elfutils-0.189-6.fc40.s390x                                                   
  elfutils-debuginfod-client-0.189-6.fc40.s390x                                 
  elfutils-default-yama-scope-0.189-6.fc40.noarch                               
  elfutils-libelf-0.189-6.fc40.s390x                                            
  elfutils-libs-0.189-6.fc40.s390x                                              
  fedora-gpg-keys-40-0.1.noarch                                                 
  fedora-release-40-0.7.noarch                                                  
  fedora-release-common-40-0.7.noarch                                           
  fedora-release-identity-basic-40-0.7.noarch                                   
  fedora-repos-40-0.1.noarch                                                    
  fedora-repos-rawhide-40-0.1.noarch                                            
  file-5.45-1.fc40.s390x                                                        
  file-libs-5.45-1.fc40.s390x                                                   
  filesystem-3.18-6.fc39.s390x                                                  
  findutils-1:4.9.0-6.fc40.s390x                                                
  fonts-srpm-macros-1:2.0.5-12.fc39.noarch                                      
  forge-srpm-macros-0.1.0-1.fc40.noarch                                         
  fpc-srpm-macros-1.3-8.fc39.noarch                                             
  gawk-5.2.2-2.fc39.s390x                                                       
  gdb-minimal-13.2-8.fc40.s390x                                                 
  gdbm-libs-1:1.23-4.fc39.s390x                                                 
  ghc-srpm-macros-1.6.1-2.fc39.noarch                                           
  glibc-2.38.9000-8.fc40.s390x                                                  
  glibc-common-2.38.9000-8.fc40.s390x                                           
  glibc-gconv-extra-2.38.9000-8.fc40.s390x                                      
  glibc-minimal-langpack-2.38.9000-8.fc40.s390x                                 
  gmp-1:6.2.1-5.fc39.s390x                                                      
  gnat-srpm-macros-6-3.fc39.noarch                                              
  go-srpm-macros-3.2.0-7.fc40.noarch                                            
  grep-3.11-5.fc40.s390x                                                        
  gzip-1.12-6.fc39.s390x                                                        
  info-7.0.3-3.fc39.s390x                                                       
  jansson-2.13.1-7.fc39.s390x                                                   
  kernel-srpm-macros-1.0-20.fc39.noarch                                         
  keyutils-libs-1.6.1-7.fc39.s390x                                              
  krb5-libs-1.21.2-1.fc40.s390x                                                 
  libacl-2.3.1-9.fc40.s390x                                                     
  libarchive-3.7.2-1.fc40.s390x                                                 
  libattr-2.5.1-9.fc40.s390x                                                    
  libblkid-2.39.2-1.fc40.s390x                                                  
  libbrotli-1.1.0-1.fc40.s390x                                                  
  libcap-2.48-7.fc39.s390x                                                      
  libcap-ng-0.8.3-8.fc40.s390x                                                  
  libcom_err-1.47.0-2.fc39.s390x                                                
  libcurl-8.3.0-1.fc40.s390x                                                    
  libdb-5.3.28-58.fc40.s390x                                                    
  libeconf-0.5.2-1.fc40.s390x                                                   
  libevent-2.1.12-9.fc39.s390x                                                  
  libfdisk-2.39.2-1.fc40.s390x                                                  
  libffi-3.4.4-4.fc39.s390x                                                     
  libgcc-13.2.1-1.fc40.s390x                                                    
  libgomp-13.2.1-1.fc40.s390x                                                   
  libidn2-2.3.4-3.fc39.s390x                                                    
  libmount-2.39.2-1.fc40.s390x                                                  
  libnghttp2-1.56.0-1.fc40.s390x                                                
  libnsl2-2.0.0-6.fc39.s390x                                                    
  libpkgconf-1.9.5-2.fc39.s390x                                                 
  libpsl-0.21.2-4.fc39.s390x                                                    
  libpwquality-1.4.5-6.fc39.s390x                                               
  libselinux-3.5-5.fc39.s390x                                                   
  libsemanage-3.5-4.fc39.s390x                                                  
  libsepol-3.5-2.fc39.s390x                                                     
  libsigsegv-2.14-5.fc39.s390x                                                  
  libsmartcols-2.39.2-1.fc40.s390x                                              
  libssh-0.10.5-2.fc40.s390x                                                    
  libssh-config-0.10.5-2.fc40.noarch                                            
  libstdc++-13.2.1-1.fc40.s390x                                                 
  libtasn1-4.19.0-3.fc39.s390x                                                  
  libtirpc-1.3.3-1.rc2.fc39.s390x                                               
  libunistring-1.1-5.fc40.s390x                                                 
  libutempter-1.2.1-10.fc39.s390x                                               
  libuuid-2.39.2-1.fc40.s390x                                                   
  libverto-0.3.2-6.fc39.s390x                                                   
  libxcrypt-4.4.36-2.fc39.s390x                                                 
  libxml2-2.11.5-1.fc40.s390x                                                   
  libzstd-1.5.5-4.fc40.s390x                                                    
  lua-libs-5.4.6-3.fc39.s390x                                                   
  lua-srpm-macros-1-9.fc39.noarch                                               
  lz4-libs-1.9.4-4.fc39.s390x                                                   
  mpfr-4.2.0-3.fc39.s390x                                                       
  ncurses-base-6.4-7.20230520.fc40.noarch                                       
  ncurses-libs-6.4-7.20230520.fc40.s390x                                        
  ocaml-srpm-macros-8-2.fc39.noarch                                             
  openblas-srpm-macros-2-14.fc39.noarch                                         
  openldap-2.6.6-1.fc39.s390x                                                   
  openssl-libs-1:3.1.1-4.fc40.s390x                                             
  p11-kit-0.25.0-2.fc39.s390x                                                   
  p11-kit-trust-0.25.0-2.fc39.s390x                                             
  package-notes-srpm-macros-0.5-9.fc39.noarch                                   
  pam-1.5.3-2.fc39.s390x                                                        
  pam-libs-1.5.3-2.fc39.s390x                                                   
  patch-2.7.6-22.fc39.s390x                                                     
  pcre2-10.42-1.fc39.2.s390x                                                    
  pcre2-syntax-10.42-1.fc39.2.noarch                                            
  perl-srpm-macros-1-51.fc39.noarch                                             
  pkgconf-1.9.5-2.fc39.s390x                                                    
  pkgconf-m4-1.9.5-2.fc39.noarch                                                
  pkgconf-pkg-config-1.9.5-2.fc39.s390x                                         
  popt-1.19-3.fc39.s390x                                                        
  publicsuffix-list-dafsa-20230812-1.fc40.noarch                                
  pyproject-srpm-macros-1.9.0-2.fc39.noarch                                     
  python-srpm-macros-3.12-4.fc40.noarch                                         
  qt5-srpm-macros-5.15.10-2.fc39.noarch                                         
  qt6-srpm-macros-6.5.2-2.fc39.noarch                                           
  readline-8.2-4.fc39.s390x                                                     
  redhat-rpm-config-270-1.fc40.noarch                                           
  rpm-4.18.99-1.fc40.s390x                                                      
  rpm-build-4.18.99-1.fc40.s390x                                                
  rpm-build-libs-4.18.99-1.fc40.s390x                                           
  rpm-libs-4.18.99-1.fc40.s390x                                                 
  rpm-sequoia-1.5.0-1.fc40.s390x                                                
  rust-srpm-macros-24-5.fc40.noarch                                             
  sed-4.8-14.fc39.s390x                                                         
  setup-2.14.4-1.fc39.noarch                                                    
  shadow-utils-2:4.14.0-1.fc40.s390x                                            
  sqlite-libs-3.43.1-1.fc40.s390x                                               
  systemd-libs-254.1-2.fc40.s390x                                               
  tar-2:1.35-2.fc40.s390x                                                       
  tzdata-2023c-3.fc40.noarch                                                    
  unzip-6.0-62.fc39.s390x                                                       
  util-linux-2.39.2-1.fc40.s390x                                                
  util-linux-core-2.39.2-1.fc40.s390x                                           
  which-2.21-40.fc39.s390x                                                      
  xxhash-libs-0.8.2-1.fc39.s390x                                                
  xz-5.4.4-1.fc39.s390x                                                         
  xz-libs-5.4.4-1.fc39.s390x                                                    
  zip-3.0-38.fc39.s390x                                                         
  zlib-ng-compat-2.1.3-3.fc40.s390x                                             
  zstd-1.5.5-4.fc40.s390x                                                       

Complete!
Finish: installing minimal buildroot with dnf
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: alternatives-1.25-1.fc39.s390x
ansible-srpm-macros-1-11.fc39.noarch
audit-libs-3.1.2-4.fc40.s390x
authselect-1.4.2-3.fc39.s390x
authselect-libs-1.4.2-3.fc39.s390x
basesystem-11-18.fc39.noarch
bash-5.2.15-5.fc39.s390x
binutils-2.41-5.fc40.s390x
binutils-gold-2.41-5.fc40.s390x
bzip2-1.0.8-16.fc39.s390x
bzip2-libs-1.0.8-16.fc39.s390x
ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch
coreutils-9.4-1.fc40.s390x
coreutils-common-9.4-1.fc40.s390x
cpio-2.14-4.fc39.s390x
cracklib-2.9.11-2.fc40.s390x
crypto-policies-20230731-1.git5ed06e0.fc39.noarch
curl-8.3.0-1.fc40.s390x
cyrus-sasl-lib-2.1.28-11.fc40.s390x
debugedit-5.0-10.fc39.s390x
diffutils-3.10-3.fc39.s390x
dwz-0.15-3.fc39.s390x
ed-1.19-4.fc39.s390x
efi-srpm-macros-5-9.fc39.noarch
elfutils-0.189-6.fc40.s390x
elfutils-debuginfod-client-0.189-6.fc40.s390x
elfutils-default-yama-scope-0.189-6.fc40.noarch
elfutils-libelf-0.189-6.fc40.s390x
elfutils-libs-0.189-6.fc40.s390x
fedora-gpg-keys-40-0.1.noarch
fedora-release-40-0.7.noarch
fedora-release-common-40-0.7.noarch
fedora-release-identity-basic-40-0.7.noarch
fedora-repos-40-0.1.noarch
fedora-repos-rawhide-40-0.1.noarch
file-5.45-1.fc40.s390x
file-libs-5.45-1.fc40.s390x
filesystem-3.18-6.fc39.s390x
findutils-4.9.0-6.fc40.s390x
fonts-srpm-macros-2.0.5-12.fc39.noarch
forge-srpm-macros-0.1.0-1.fc40.noarch
fpc-srpm-macros-1.3-8.fc39.noarch
gawk-5.2.2-2.fc39.s390x
gdb-minimal-13.2-8.fc40.s390x
gdbm-libs-1.23-4.fc39.s390x
ghc-srpm-macros-1.6.1-2.fc39.noarch
glibc-2.38.9000-8.fc40.s390x
glibc-common-2.38.9000-8.fc40.s390x
glibc-gconv-extra-2.38.9000-8.fc40.s390x
glibc-minimal-langpack-2.38.9000-8.fc40.s390x
gmp-6.2.1-5.fc39.s390x
gnat-srpm-macros-6-3.fc39.noarch
go-srpm-macros-3.2.0-7.fc40.noarch
gpg-pubkey-18b8e74c-62f2920f
gpg-pubkey-a15b79cc-63d04c2c
grep-3.11-5.fc40.s390x
gzip-1.12-6.fc39.s390x
info-7.0.3-3.fc39.s390x
jansson-2.13.1-7.fc39.s390x
kernel-srpm-macros-1.0-20.fc39.noarch
keyutils-libs-1.6.1-7.fc39.s390x
krb5-libs-1.21.2-1.fc40.s390x
libacl-2.3.1-9.fc40.s390x
libarchive-3.7.2-1.fc40.s390x
libattr-2.5.1-9.fc40.s390x
libblkid-2.39.2-1.fc40.s390x
libbrotli-1.1.0-1.fc40.s390x
libcap-2.48-7.fc39.s390x
libcap-ng-0.8.3-8.fc40.s390x
libcom_err-1.47.0-2.fc39.s390x
libcurl-8.3.0-1.fc40.s390x
libdb-5.3.28-58.fc40.s390x
libeconf-0.5.2-1.fc40.s390x
libevent-2.1.12-9.fc39.s390x
libfdisk-2.39.2-1.fc40.s390x
libffi-3.4.4-4.fc39.s390x
libgcc-13.2.1-1.fc40.s390x
libgomp-13.2.1-1.fc40.s390x
libidn2-2.3.4-3.fc39.s390x
libmount-2.39.2-1.fc40.s390x
libnghttp2-1.56.0-1.fc40.s390x
libnsl2-2.0.0-6.fc39.s390x
libpkgconf-1.9.5-2.fc39.s390x
libpsl-0.21.2-4.fc39.s390x
libpwquality-1.4.5-6.fc39.s390x
libselinux-3.5-5.fc39.s390x
libsemanage-3.5-4.fc39.s390x
libsepol-3.5-2.fc39.s390x
libsigsegv-2.14-5.fc39.s390x
libsmartcols-2.39.2-1.fc40.s390x
libssh-0.10.5-2.fc40.s390x
libssh-config-0.10.5-2.fc40.noarch
libstdc++-13.2.1-1.fc40.s390x
libtasn1-4.19.0-3.fc39.s390x
libtirpc-1.3.3-1.rc2.fc39.s390x
libunistring-1.1-5.fc40.s390x
libutempter-1.2.1-10.fc39.s390x
libuuid-2.39.2-1.fc40.s390x
libverto-0.3.2-6.fc39.s390x
libxcrypt-4.4.36-2.fc39.s390x
libxml2-2.11.5-1.fc40.s390x
libzstd-1.5.5-4.fc40.s390x
lua-libs-5.4.6-3.fc39.s390x
lua-srpm-macros-1-9.fc39.noarch
lz4-libs-1.9.4-4.fc39.s390x
mpfr-4.2.0-3.fc39.s390x
ncurses-base-6.4-7.20230520.fc40.noarch
ncurses-libs-6.4-7.20230520.fc40.s390x
ocaml-srpm-macros-8-2.fc39.noarch
openblas-srpm-macros-2-14.fc39.noarch
openldap-2.6.6-1.fc39.s390x
openssl-libs-3.1.1-4.fc40.s390x
p11-kit-0.25.0-2.fc39.s390x
p11-kit-trust-0.25.0-2.fc39.s390x
package-notes-srpm-macros-0.5-9.fc39.noarch
pam-1.5.3-2.fc39.s390x
pam-libs-1.5.3-2.fc39.s390x
patch-2.7.6-22.fc39.s390x
pcre2-10.42-1.fc39.2.s390x
pcre2-syntax-10.42-1.fc39.2.noarch
perl-srpm-macros-1-51.fc39.noarch
pkgconf-1.9.5-2.fc39.s390x
pkgconf-m4-1.9.5-2.fc39.noarch
pkgconf-pkg-config-1.9.5-2.fc39.s390x
popt-1.19-3.fc39.s390x
publicsuffix-list-dafsa-20230812-1.fc40.noarch
pyproject-srpm-macros-1.9.0-2.fc39.noarch
python-srpm-macros-3.12-4.fc40.noarch
qt5-srpm-macros-5.15.10-2.fc39.noarch
qt6-srpm-macros-6.5.2-2.fc39.noarch
readline-8.2-4.fc39.s390x
redhat-rpm-config-270-1.fc40.noarch
rpm-4.18.99-1.fc40.s390x
rpm-build-4.18.99-1.fc40.s390x
rpm-build-libs-4.18.99-1.fc40.s390x
rpm-libs-4.18.99-1.fc40.s390x
rpm-sequoia-1.5.0-1.fc40.s390x
rust-srpm-macros-24-5.fc40.noarch
sed-4.8-14.fc39.s390x
setup-2.14.4-1.fc39.noarch
shadow-utils-4.14.0-1.fc40.s390x
sqlite-libs-3.43.1-1.fc40.s390x
systemd-libs-254.1-2.fc40.s390x
tar-1.35-2.fc40.s390x
tzdata-2023c-3.fc40.noarch
unzip-6.0-62.fc39.s390x
util-linux-2.39.2-1.fc40.s390x
util-linux-core-2.39.2-1.fc40.s390x
which-2.21-40.fc39.s390x
xxhash-libs-0.8.2-1.fc39.s390x
xz-5.4.4-1.fc39.s390x
xz-libs-5.4.4-1.fc39.s390x
zip-3.0-38.fc39.s390x
zlib-ng-compat-2.1.3-3.fc40.s390x
zstd-1.5.5-4.fc40.s390x
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1689984000
Wrote: /builddir/build/SRPMS/samtools-1.15.1-3.fc40.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-s390x-1695090297.690834/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-s390x-1695090297.690834/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-s390x-1695090297.690834/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-5j481x1i/samtools/samtools.spec) Config(child) 2 minutes 49 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/samtools-1.15.1-3.fc40.src.rpm)  Config(fedora-rawhide-s390x)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1695090297.690834/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1695090297.690834/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1695090297.690834/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Finish: chroot init
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.18.99-1.fc40.s390x
  rpm-sequoia-1.5.0-1.fc40.s390x
  python3-dnf-4.16.2-4.fc40.noarch
  python3-dnf-plugins-core-4.4.2-1.fc39.noarch
  yum-4.16.2-4.fc40.noarch
Start: build phase for samtools-1.15.1-3.fc40.src.rpm
Start: build setup for samtools-1.15.1-3.fc40.src.rpm
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1689984000
Wrote: /builddir/build/SRPMS/samtools-1.15.1-3.fc40.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Copr repository                                 2.2 kB/s | 1.5 kB     00:00    
fedora                                          8.7 kB/s | 6.1 kB     00:00    
Dependencies resolved.
================================================================================
 Package                  Arch     Version                    Repository   Size
================================================================================
Installing:
 gcc                      s390x    13.2.1-1.fc40              copr_base    28 M
 htslib-devel             s390x    1.15.1-3.fc40              copr_base   100 k
 htslib-tools             s390x    1.15.1-3.fc40              copr_base   585 k
 make                     s390x    1:4.4.1-2.fc39             fedora      605 k
 ncurses-devel            s390x    6.4-7.20230520.fc40        fedora      546 k
 perl-FindBin             noarch   1.53-500.fc39              fedora       14 k
 perl-Getopt-Long         noarch   1:2.54-500.fc39            fedora       60 k
 perl-interpreter         s390x    4:5.38.0-500.fc39          fedora       72 k
 perl-lib                 s390x    0.65-500.fc39              fedora       15 k
 zlib-ng-compat-devel     s390x    2.1.3-3.fc40               copr_base    34 k
Installing dependencies:
 annobin-docs             noarch   12.26-1.fc40               fedora       94 k
 annobin-plugin-gcc       s390x    12.26-1.fc40               fedora      958 k
 cpp                      s390x    13.2.1-1.fc40              copr_base   8.8 M
 gc                       s390x    8.2.2-4.fc39               fedora      114 k
 gcc-plugin-annobin       s390x    13.2.1-1.fc40              copr_base    46 k
 glibc-devel              s390x    2.38.9000-8.fc40           copr_base    96 k
 glibc-headers-s390       noarch   2.38.9000-8.fc40           copr_base   489 k
 groff-base               s390x    1.23.0-2.fc39              fedora      1.2 M
 guile22                  s390x    2.2.7-9.fc39               fedora      6.5 M
 htslib                   s390x    1.15.1-3.fc40              copr_base   532 k
 kernel-headers           s390x    6.6.0-0.rc1.git0.1.fc40    fedora      1.5 M
 libasan                  s390x    13.2.1-1.fc40              copr_base   507 k
 libatomic                s390x    13.2.1-1.fc40              copr_base    34 k
 libmpc                   s390x    1.3.1-3.fc39               fedora       73 k
 libtool-ltdl             s390x    2.4.7-8.fc40               fedora       37 k
 libubsan                 s390x    13.2.1-1.fc40              copr_base   219 k
 libxcrypt-devel          s390x    4.4.36-2.fc39              fedora       30 k
 ncurses                  s390x    6.4-7.20230520.fc40        fedora      424 k
 ncurses-c++-libs         s390x    6.4-7.20230520.fc40        fedora       38 k
 perl-AutoLoader          noarch   5.74-500.fc39              fedora       21 k
 perl-B                   s390x    1.88-500.fc39              fedora      178 k
 perl-Carp                noarch   1.54-500.fc39              fedora       29 k
 perl-Class-Struct        noarch   0.68-500.fc39              fedora       22 k
 perl-Data-Dumper         s390x    2.188-501.fc39             fedora       57 k
 perl-Digest              noarch   1.20-500.fc39              fedora       25 k
 perl-Digest-MD5          s390x    2.58-500.fc39              fedora       35 k
 perl-DynaLoader          s390x    1.54-500.fc39              fedora       26 k
 perl-Encode              s390x    4:3.19-500.fc39            fedora      1.7 M
 perl-Errno               s390x    1.37-500.fc39              fedora       15 k
 perl-Exporter            noarch   5.77-500.fc39              fedora       31 k
 perl-Fcntl               s390x    1.15-500.fc39              fedora       21 k
 perl-File-Basename       noarch   2.86-500.fc39              fedora       17 k
 perl-File-Path           noarch   2.18-500.fc39              fedora       35 k
 perl-File-Temp           noarch   1:0.231.100-500.fc39       fedora       58 k
 perl-File-stat           noarch   1.13-500.fc39              fedora       17 k
 perl-FileHandle          noarch   2.05-500.fc39              fedora       16 k
 perl-Getopt-Std          noarch   1.13-500.fc39              fedora       16 k
 perl-HTTP-Tiny           noarch   0.088-3.fc39               fedora       56 k
 perl-IO                  s390x    1.52-500.fc39              fedora       82 k
 perl-IO-Socket-IP        noarch   0.42-1.fc39                fedora       42 k
 perl-IO-Socket-SSL       noarch   2.083-3.fc39               fedora      225 k
 perl-IPC-Open3           noarch   1.22-500.fc39              fedora       22 k
 perl-MIME-Base64         s390x    3.16-500.fc39              fedora       30 k
 perl-Mozilla-CA          noarch   20230821-1.fc40            fedora       13 k
 perl-Net-SSLeay          s390x    1.92-10.fc39               fedora      363 k
 perl-POSIX               s390x    2.13-500.fc39              fedora       98 k
 perl-PathTools           s390x    3.89-500.fc39              fedora       87 k
 perl-Pod-Escapes         noarch   1:1.07-501.fc40            fedora       19 k
 perl-Pod-Perldoc         noarch   3.28.01-501.fc39           fedora       86 k
 perl-Pod-Simple          noarch   1:3.45-4.fc39              fedora      218 k
 perl-Pod-Usage           noarch   4:2.03-500.fc39            fedora       39 k
 perl-Scalar-List-Utils   s390x    5:1.63-500.fc39            fedora       74 k
 perl-SelectSaver         noarch   1.02-500.fc39              fedora       12 k
 perl-Socket              s390x    4:2.037-3.fc39             fedora       55 k
 perl-Storable            s390x    1:3.32-500.fc39            fedora      100 k
 perl-Symbol              noarch   1.09-500.fc39              fedora       14 k
 perl-Term-ANSIColor      noarch   5.01-501.fc39              fedora       47 k
 perl-Term-Cap            noarch   1.18-500.fc39              fedora       22 k
 perl-Text-ParseWords     noarch   3.31-500.fc39              fedora       16 k
 perl-Text-Tabs+Wrap      noarch   2023.0511-3.fc39           fedora       22 k
 perl-Time-Local          noarch   2:1.350-3.fc39             fedora       34 k
 perl-URI                 noarch   5.21-1.fc40                fedora      125 k
 perl-base                noarch   2.27-500.fc39              fedora       16 k
 perl-constant            noarch   1.33-501.fc39              fedora       22 k
 perl-if                  noarch   0.61.000-500.fc39          fedora       14 k
 perl-libnet              noarch   3.15-501.fc39              fedora      129 k
 perl-libs                s390x    4:5.38.0-500.fc39          fedora      2.5 M
 perl-locale              noarch   1.10-500.fc39              fedora       14 k
 perl-mro                 s390x    1.28-500.fc39              fedora       29 k
 perl-overload            noarch   1.37-500.fc39              fedora       46 k
 perl-overloading         noarch   0.02-500.fc39              fedora       13 k
 perl-parent              noarch   1:0.241-500.fc39           fedora       14 k
 perl-podlators           noarch   1:5.01-500.fc39            fedora      125 k
 perl-vars                noarch   1.05-500.fc39              fedora       13 k

Transaction Summary
================================================================================
Install  84 Packages

Total download size: 59 M
Installed size: 188 M
Downloading Packages:
(1/84): gcc-plugin-annobin-13.2.1-1.fc40.s390x. 9.2 kB/s |  46 kB     00:05    
(2/84): glibc-devel-2.38.9000-8.fc40.s390x.rpm   13 MB/s |  96 kB     00:00    
(3/84): glibc-headers-s390-2.38.9000-8.fc40.noa 8.3 MB/s | 489 kB     00:00    
(4/84): htslib-1.15.1-3.fc40.s390x.rpm           24 MB/s | 532 kB     00:00    
(5/84): htslib-devel-1.15.1-3.fc40.s390x.rpm    8.1 MB/s | 100 kB     00:00    
(6/84): cpp-13.2.1-1.fc40.s390x.rpm             1.7 MB/s | 8.8 MB     00:05    
(7/84): libasan-13.2.1-1.fc40.s390x.rpm          41 MB/s | 507 kB     00:00    
(8/84): libatomic-13.2.1-1.fc40.s390x.rpm       5.7 MB/s |  34 kB     00:00    
(9/84): libubsan-13.2.1-1.fc40.s390x.rpm         16 MB/s | 219 kB     00:00    
(10/84): zlib-ng-compat-devel-2.1.3-3.fc40.s390 5.9 MB/s |  34 kB     00:00    
(11/84): gcc-13.2.1-1.fc40.s390x.rpm            5.0 MB/s |  28 MB     00:05    
(12/84): annobin-docs-12.26-1.fc40.noarch.rpm   118 kB/s |  94 kB     00:00    
(13/84): gc-8.2.2-4.fc39.s390x.rpm              338 kB/s | 114 kB     00:00    
(14/84): htslib-tools-1.15.1-3.fc40.s390x.rpm   399 kB/s | 585 kB     00:01    
(15/84): annobin-plugin-gcc-12.26-1.fc40.s390x. 729 kB/s | 958 kB     00:01    
(16/84): groff-base-1.23.0-2.fc39.s390x.rpm     1.7 MB/s | 1.2 MB     00:00    
(17/84): libmpc-1.3.1-3.fc39.s390x.rpm          396 kB/s |  73 kB     00:00    
(18/84): kernel-headers-6.6.0-0.rc1.git0.1.fc40 3.9 MB/s | 1.5 MB     00:00    
(19/84): libtool-ltdl-2.4.7-8.fc40.s390x.rpm    202 kB/s |  37 kB     00:00    
(20/84): libxcrypt-devel-4.4.36-2.fc39.s390x.rp 180 kB/s |  30 kB     00:00    
(21/84): make-4.4.1-2.fc39.s390x.rpm            2.5 MB/s | 605 kB     00:00    
(22/84): ncurses-6.4-7.20230520.fc40.s390x.rpm  1.8 MB/s | 424 kB     00:00    
(23/84): ncurses-c++-libs-6.4-7.20230520.fc40.s 213 kB/s |  38 kB     00:00    
(24/84): ncurses-devel-6.4-7.20230520.fc40.s390 2.6 MB/s | 546 kB     00:00    
(25/84): perl-AutoLoader-5.74-500.fc39.noarch.r 137 kB/s |  21 kB     00:00    
(26/84): perl-B-1.88-500.fc39.s390x.rpm         812 kB/s | 178 kB     00:00    
(27/84): perl-Carp-1.54-500.fc39.noarch.rpm     160 kB/s |  29 kB     00:00    
(28/84): guile22-2.2.7-9.fc39.s390x.rpm         3.5 MB/s | 6.5 MB     00:01    
(29/84): perl-Class-Struct-0.68-500.fc39.noarch  75 kB/s |  22 kB     00:00    
(30/84): perl-Data-Dumper-2.188-501.fc39.s390x. 242 kB/s |  57 kB     00:00    
(31/84): perl-Digest-1.20-500.fc39.noarch.rpm   143 kB/s |  25 kB     00:00    
(32/84): perl-Digest-MD5-2.58-500.fc39.s390x.rp 200 kB/s |  35 kB     00:00    
(33/84): perl-DynaLoader-1.54-500.fc39.s390x.rp 150 kB/s |  26 kB     00:00    
(34/84): perl-Encode-3.19-500.fc39.s390x.rpm    7.7 MB/s | 1.7 MB     00:00    
(35/84): perl-Errno-1.37-500.fc39.s390x.rpm      83 kB/s |  15 kB     00:00    
(36/84): perl-Exporter-5.77-500.fc39.noarch.rpm 168 kB/s |  31 kB     00:00    
(37/84): perl-Fcntl-1.15-500.fc39.s390x.rpm     118 kB/s |  21 kB     00:00    
(38/84): perl-File-Basename-2.86-500.fc39.noarc 106 kB/s |  17 kB     00:00    
(39/84): perl-File-Path-2.18-500.fc39.noarch.rp 195 kB/s |  35 kB     00:00    
(40/84): perl-File-Temp-0.231.100-500.fc39.noar 377 kB/s |  58 kB     00:00    
(41/84): perl-File-stat-1.13-500.fc39.noarch.rp 101 kB/s |  17 kB     00:00    
(42/84): perl-FileHandle-2.05-500.fc39.noarch.r  92 kB/s |  16 kB     00:00    
(43/84): perl-FindBin-1.53-500.fc39.noarch.rpm   85 kB/s |  14 kB     00:00    
(44/84): perl-Getopt-Std-1.13-500.fc39.noarch.r 101 kB/s |  16 kB     00:00    
(45/84): perl-Getopt-Long-2.54-500.fc39.noarch. 288 kB/s |  60 kB     00:00    
(46/84): perl-HTTP-Tiny-0.088-3.fc39.noarch.rpm 277 kB/s |  56 kB     00:00    
(47/84): perl-IO-1.52-500.fc39.s390x.rpm        470 kB/s |  82 kB     00:00    
(48/84): perl-IO-Socket-IP-0.42-1.fc39.noarch.r 248 kB/s |  42 kB     00:00    
(49/84): perl-IO-Socket-SSL-2.083-3.fc39.noarch 1.3 MB/s | 225 kB     00:00    
(50/84): perl-IPC-Open3-1.22-500.fc39.noarch.rp 125 kB/s |  22 kB     00:00    
(51/84): perl-MIME-Base64-3.16-500.fc39.s390x.r 156 kB/s |  30 kB     00:00    
(52/84): perl-Mozilla-CA-20230821-1.fc40.noarch  74 kB/s |  13 kB     00:00    
(53/84): perl-Net-SSLeay-1.92-10.fc39.s390x.rpm 1.7 MB/s | 363 kB     00:00    
(54/84): perl-POSIX-2.13-500.fc39.s390x.rpm     500 kB/s |  98 kB     00:00    
(55/84): perl-PathTools-3.89-500.fc39.s390x.rpm 478 kB/s |  87 kB     00:00    
(56/84): perl-Pod-Escapes-1.07-501.fc40.noarch. 113 kB/s |  19 kB     00:00    
(57/84): perl-Pod-Perldoc-3.28.01-501.fc39.noar 492 kB/s |  86 kB     00:00    
(58/84): perl-Pod-Simple-3.45-4.fc39.noarch.rpm 1.2 MB/s | 218 kB     00:00    
(59/84): perl-Pod-Usage-2.03-500.fc39.noarch.rp 234 kB/s |  39 kB     00:00    
(60/84): perl-Scalar-List-Utils-1.63-500.fc39.s 443 kB/s |  74 kB     00:00    
(61/84): perl-SelectSaver-1.02-500.fc39.noarch.  67 kB/s |  12 kB     00:00    
(62/84): perl-Socket-2.037-3.fc39.s390x.rpm     298 kB/s |  55 kB     00:00    
(63/84): perl-Storable-3.32-500.fc39.s390x.rpm  595 kB/s | 100 kB     00:00    
(64/84): perl-Symbol-1.09-500.fc39.noarch.rpm    79 kB/s |  14 kB     00:00    
(65/84): perl-Term-ANSIColor-5.01-501.fc39.noar 262 kB/s |  47 kB     00:00    
(66/84): perl-Term-Cap-1.18-500.fc39.noarch.rpm  97 kB/s |  22 kB     00:00    
(67/84): perl-Text-ParseWords-3.31-500.fc39.noa  92 kB/s |  16 kB     00:00    
(68/84): perl-Text-Tabs+Wrap-2023.0511-3.fc39.n 113 kB/s |  22 kB     00:00    
(69/84): perl-Time-Local-1.350-3.fc39.noarch.rp 179 kB/s |  34 kB     00:00    
(70/84): perl-URI-5.21-1.fc40.noarch.rpm        727 kB/s | 125 kB     00:00    
(71/84): perl-base-2.27-500.fc39.noarch.rpm      94 kB/s |  16 kB     00:00    
(72/84): perl-constant-1.33-501.fc39.noarch.rpm 147 kB/s |  22 kB     00:00    
(73/84): perl-if-0.61.000-500.fc39.noarch.rpm    87 kB/s |  14 kB     00:00    
(74/84): perl-interpreter-5.38.0-500.fc39.s390x 394 kB/s |  72 kB     00:00    
(75/84): perl-lib-0.65-500.fc39.s390x.rpm        89 kB/s |  15 kB     00:00    
(76/84): perl-libnet-3.15-501.fc39.noarch.rpm   793 kB/s | 129 kB     00:00    
(77/84): perl-locale-1.10-500.fc39.noarch.rpm    73 kB/s |  14 kB     00:00    
(78/84): perl-mro-1.28-500.fc39.s390x.rpm       166 kB/s |  29 kB     00:00    
(79/84): perl-overload-1.37-500.fc39.noarch.rpm 282 kB/s |  46 kB     00:00    
(80/84): perl-libs-5.38.0-500.fc39.s390x.rpm    6.0 MB/s | 2.5 MB     00:00    
(81/84): perl-overloading-0.02-500.fc39.noarch.  75 kB/s |  13 kB     00:00    
(82/84): perl-parent-0.241-500.fc39.noarch.rpm   81 kB/s |  14 kB     00:00    
(83/84): perl-podlators-5.01-500.fc39.noarch.rp 708 kB/s | 125 kB     00:00    
(84/84): perl-vars-1.05-500.fc39.noarch.rpm      73 kB/s |  13 kB     00:00    
--------------------------------------------------------------------------------
Total                                           4.8 MB/s |  59 MB     00:12     
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Preparing        :                                                        1/1 
  Installing       : libmpc-1.3.1-3.fc39.s390x                             1/84 
  Installing       : htslib-1.15.1-3.fc40.s390x                            2/84 
  Installing       : cpp-13.2.1-1.fc40.s390x                               3/84 
  Installing       : ncurses-c++-libs-6.4-7.20230520.fc40.s390x            4/84 
  Installing       : ncurses-6.4-7.20230520.fc40.s390x                     5/84 
  Installing       : libtool-ltdl-2.4.7-8.fc40.s390x                       6/84 
  Installing       : kernel-headers-6.6.0-0.rc1.git0.1.fc40.s390x          7/84 
  Running scriptlet: groff-base-1.23.0-2.fc39.s390x                        8/84 
  Installing       : groff-base-1.23.0-2.fc39.s390x                        8/84 
  Running scriptlet: groff-base-1.23.0-2.fc39.s390x                        8/84 
  Installing       : perl-Digest-1.20-500.fc39.noarch                      9/84 
  Installing       : perl-Digest-MD5-2.58-500.fc39.s390x                  10/84 
  Installing       : perl-B-1.88-500.fc39.s390x                           11/84 
  Installing       : perl-FileHandle-2.05-500.fc39.noarch                 12/84 
  Installing       : perl-Data-Dumper-2.188-501.fc39.s390x                13/84 
  Installing       : perl-libnet-3.15-501.fc39.noarch                     14/84 
  Installing       : perl-AutoLoader-5.74-500.fc39.noarch                 15/84 
  Installing       : perl-base-2.27-500.fc39.noarch                       16/84 
  Installing       : perl-URI-5.21-1.fc40.noarch                          17/84 
  Installing       : perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch          18/84 
  Installing       : perl-Mozilla-CA-20230821-1.fc40.noarch               19/84 
  Installing       : perl-if-0.61.000-500.fc39.noarch                     20/84 
  Installing       : perl-locale-1.10-500.fc39.noarch                     21/84 
  Installing       : perl-IO-Socket-IP-0.42-1.fc39.noarch                 22/84 
  Installing       : perl-Time-Local-2:1.350-3.fc39.noarch                23/84 
  Installing       : perl-File-Path-2.18-500.fc39.noarch                  24/84 
  Installing       : perl-IO-Socket-SSL-2.083-3.fc39.noarch               25/84 
  Installing       : perl-Net-SSLeay-1.92-10.fc39.s390x                   26/84 
  Installing       : perl-Pod-Escapes-1:1.07-501.fc40.noarch              27/84 
  Installing       : perl-Class-Struct-0.68-500.fc39.noarch               28/84 
  Installing       : perl-Term-ANSIColor-5.01-501.fc39.noarch             29/84 
  Installing       : perl-POSIX-2.13-500.fc39.s390x                       30/84 
  Installing       : perl-IPC-Open3-1.22-500.fc39.noarch                  31/84 
  Installing       : perl-File-Temp-1:0.231.100-500.fc39.noarch           32/84 
  Installing       : perl-HTTP-Tiny-0.088-3.fc39.noarch                   33/84 
  Installing       : perl-Term-Cap-1.18-500.fc39.noarch                   34/84 
  Installing       : perl-Pod-Simple-1:3.45-4.fc39.noarch                 35/84 
  Installing       : perl-Socket-4:2.037-3.fc39.s390x                     36/84 
  Installing       : perl-SelectSaver-1.02-500.fc39.noarch                37/84 
  Installing       : perl-Symbol-1.09-500.fc39.noarch                     38/84 
  Installing       : perl-File-stat-1.13-500.fc39.noarch                  39/84 
  Installing       : perl-podlators-1:5.01-500.fc39.noarch                40/84 
  Installing       : perl-Pod-Perldoc-3.28.01-501.fc39.noarch             41/84 
  Installing       : perl-Fcntl-1.15-500.fc39.s390x                       42/84 
  Installing       : perl-Text-ParseWords-3.31-500.fc39.noarch            43/84 
  Installing       : perl-mro-1.28-500.fc39.s390x                         44/84 
  Installing       : perl-IO-1.52-500.fc39.s390x                          45/84 
  Installing       : perl-overloading-0.02-500.fc39.noarch                46/84 
  Installing       : perl-Pod-Usage-4:2.03-500.fc39.noarch                47/84 
  Installing       : perl-Errno-1.37-500.fc39.s390x                       48/84 
  Installing       : perl-File-Basename-2.86-500.fc39.noarch              49/84 
  Installing       : perl-Getopt-Std-1.13-500.fc39.noarch                 50/84 
  Installing       : perl-MIME-Base64-3.16-500.fc39.s390x                 51/84 
  Installing       : perl-Scalar-List-Utils-5:1.63-500.fc39.s390x         52/84 
  Installing       : perl-constant-1.33-501.fc39.noarch                   53/84 
  Installing       : perl-Storable-1:3.32-500.fc39.s390x                  54/84 
  Installing       : perl-overload-1.37-500.fc39.noarch                   55/84 
  Installing       : perl-parent-1:0.241-500.fc39.noarch                  56/84 
  Installing       : perl-vars-1.05-500.fc39.noarch                       57/84 
  Installing       : perl-Getopt-Long-1:2.54-500.fc39.noarch              58/84 
  Installing       : perl-Carp-1.54-500.fc39.noarch                       59/84 
  Installing       : perl-Exporter-5.77-500.fc39.noarch                   60/84 
  Installing       : perl-PathTools-3.89-500.fc39.s390x                   61/84 
  Installing       : perl-DynaLoader-1.54-500.fc39.s390x                  62/84 
  Installing       : perl-Encode-4:3.19-500.fc39.s390x                    63/84 
  Installing       : perl-libs-4:5.38.0-500.fc39.s390x                    64/84 
  Installing       : perl-interpreter-4:5.38.0-500.fc39.s390x             65/84 
  Installing       : gc-8.2.2-4.fc39.s390x                                66/84 
  Installing       : guile22-2.2.7-9.fc39.s390x                           67/84 
  Installing       : make-1:4.4.1-2.fc39.s390x                            68/84 
  Installing       : annobin-docs-12.26-1.fc40.noarch                     69/84 
  Installing       : libubsan-13.2.1-1.fc40.s390x                         70/84 
  Installing       : libatomic-13.2.1-1.fc40.s390x                        71/84 
  Installing       : libasan-13.2.1-1.fc40.s390x                          72/84 
  Installing       : glibc-headers-s390-2.38.9000-8.fc40.noarch           73/84 
  Installing       : libxcrypt-devel-4.4.36-2.fc39.s390x                  74/84 
  Installing       : glibc-devel-2.38.9000-8.fc40.s390x                   75/84 
  Installing       : gcc-13.2.1-1.fc40.s390x                              76/84 
  Running scriptlet: gcc-13.2.1-1.fc40.s390x                              76/84 
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  Installing       : annobin-plugin-gcc-12.26-1.fc40.s390x                78/84 
  Running scriptlet: annobin-plugin-gcc-12.26-1.fc40.s390x                78/84 
  Installing       : perl-FindBin-1.53-500.fc39.noarch                    79/84 
  Installing       : perl-lib-0.65-500.fc39.s390x                         80/84 
  Installing       : ncurses-devel-6.4-7.20230520.fc40.s390x              81/84 
  Installing       : htslib-devel-1.15.1-3.fc40.s390x                     82/84 
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  Installing       : zlib-ng-compat-devel-2.1.3-3.fc40.s390x              84/84 
  Running scriptlet: zlib-ng-compat-devel-2.1.3-3.fc40.s390x              84/84 
  Verifying        : cpp-13.2.1-1.fc40.s390x                               1/84 
  Verifying        : gcc-13.2.1-1.fc40.s390x                               2/84 
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  Verifying        : htslib-1.15.1-3.fc40.s390x                            6/84 
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  Verifying        : libasan-13.2.1-1.fc40.s390x                           9/84 
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  Verifying        : libubsan-13.2.1-1.fc40.s390x                         11/84 
  Verifying        : zlib-ng-compat-devel-2.1.3-3.fc40.s390x              12/84 
  Verifying        : annobin-docs-12.26-1.fc40.noarch                     13/84 
  Verifying        : annobin-plugin-gcc-12.26-1.fc40.s390x                14/84 
  Verifying        : gc-8.2.2-4.fc39.s390x                                15/84 
  Verifying        : groff-base-1.23.0-2.fc39.s390x                       16/84 
  Verifying        : guile22-2.2.7-9.fc39.s390x                           17/84 
  Verifying        : kernel-headers-6.6.0-0.rc1.git0.1.fc40.s390x         18/84 
  Verifying        : libmpc-1.3.1-3.fc39.s390x                            19/84 
  Verifying        : libtool-ltdl-2.4.7-8.fc40.s390x                      20/84 
  Verifying        : libxcrypt-devel-4.4.36-2.fc39.s390x                  21/84 
  Verifying        : make-1:4.4.1-2.fc39.s390x                            22/84 
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  Verifying        : ncurses-c++-libs-6.4-7.20230520.fc40.s390x           24/84 
  Verifying        : ncurses-devel-6.4-7.20230520.fc40.s390x              25/84 
  Verifying        : perl-AutoLoader-5.74-500.fc39.noarch                 26/84 
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  Verifying        : perl-Carp-1.54-500.fc39.noarch                       28/84 
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  Verifying        : perl-File-stat-1.13-500.fc39.noarch                  41/84 
  Verifying        : perl-FileHandle-2.05-500.fc39.noarch                 42/84 
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  Verifying        : perl-Getopt-Long-1:2.54-500.fc39.noarch              44/84 
  Verifying        : perl-Getopt-Std-1.13-500.fc39.noarch                 45/84 
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  Verifying        : perl-Mozilla-CA-20230821-1.fc40.noarch               52/84 
  Verifying        : perl-Net-SSLeay-1.92-10.fc39.s390x                   53/84 
  Verifying        : perl-POSIX-2.13-500.fc39.s390x                       54/84 
  Verifying        : perl-PathTools-3.89-500.fc39.s390x                   55/84 
  Verifying        : perl-Pod-Escapes-1:1.07-501.fc40.noarch              56/84 
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  Verifying        : perl-Pod-Simple-1:3.45-4.fc39.noarch                 58/84 
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  Verifying        : perl-Symbol-1.09-500.fc39.noarch                     64/84 
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  Verifying        : perl-podlators-1:5.01-500.fc39.noarch                83/84 
  Verifying        : perl-vars-1.05-500.fc39.noarch                       84/84 

Installed:
  annobin-docs-12.26-1.fc40.noarch                                              
  annobin-plugin-gcc-12.26-1.fc40.s390x                                         
  cpp-13.2.1-1.fc40.s390x                                                       
  gc-8.2.2-4.fc39.s390x                                                         
  gcc-13.2.1-1.fc40.s390x                                                       
  gcc-plugin-annobin-13.2.1-1.fc40.s390x                                        
  glibc-devel-2.38.9000-8.fc40.s390x                                            
  glibc-headers-s390-2.38.9000-8.fc40.noarch                                    
  groff-base-1.23.0-2.fc39.s390x                                                
  guile22-2.2.7-9.fc39.s390x                                                    
  htslib-1.15.1-3.fc40.s390x                                                    
  htslib-devel-1.15.1-3.fc40.s390x                                              
  htslib-tools-1.15.1-3.fc40.s390x                                              
  kernel-headers-6.6.0-0.rc1.git0.1.fc40.s390x                                  
  libasan-13.2.1-1.fc40.s390x                                                   
  libatomic-13.2.1-1.fc40.s390x                                                 
  libmpc-1.3.1-3.fc39.s390x                                                     
  libtool-ltdl-2.4.7-8.fc40.s390x                                               
  libubsan-13.2.1-1.fc40.s390x                                                  
  libxcrypt-devel-4.4.36-2.fc39.s390x                                           
  make-1:4.4.1-2.fc39.s390x                                                     
  ncurses-6.4-7.20230520.fc40.s390x                                             
  ncurses-c++-libs-6.4-7.20230520.fc40.s390x                                    
  ncurses-devel-6.4-7.20230520.fc40.s390x                                       
  perl-AutoLoader-5.74-500.fc39.noarch                                          
  perl-B-1.88-500.fc39.s390x                                                    
  perl-Carp-1.54-500.fc39.noarch                                                
  perl-Class-Struct-0.68-500.fc39.noarch                                        
  perl-Data-Dumper-2.188-501.fc39.s390x                                         
  perl-Digest-1.20-500.fc39.noarch                                              
  perl-Digest-MD5-2.58-500.fc39.s390x                                           
  perl-DynaLoader-1.54-500.fc39.s390x                                           
  perl-Encode-4:3.19-500.fc39.s390x                                             
  perl-Errno-1.37-500.fc39.s390x                                                
  perl-Exporter-5.77-500.fc39.noarch                                            
  perl-Fcntl-1.15-500.fc39.s390x                                                
  perl-File-Basename-2.86-500.fc39.noarch                                       
  perl-File-Path-2.18-500.fc39.noarch                                           
  perl-File-Temp-1:0.231.100-500.fc39.noarch                                    
  perl-File-stat-1.13-500.fc39.noarch                                           
  perl-FileHandle-2.05-500.fc39.noarch                                          
  perl-FindBin-1.53-500.fc39.noarch                                             
  perl-Getopt-Long-1:2.54-500.fc39.noarch                                       
  perl-Getopt-Std-1.13-500.fc39.noarch                                          
  perl-HTTP-Tiny-0.088-3.fc39.noarch                                            
  perl-IO-1.52-500.fc39.s390x                                                   
  perl-IO-Socket-IP-0.42-1.fc39.noarch                                          
  perl-IO-Socket-SSL-2.083-3.fc39.noarch                                        
  perl-IPC-Open3-1.22-500.fc39.noarch                                           
  perl-MIME-Base64-3.16-500.fc39.s390x                                          
  perl-Mozilla-CA-20230821-1.fc40.noarch                                        
  perl-Net-SSLeay-1.92-10.fc39.s390x                                            
  perl-POSIX-2.13-500.fc39.s390x                                                
  perl-PathTools-3.89-500.fc39.s390x                                            
  perl-Pod-Escapes-1:1.07-501.fc40.noarch                                       
  perl-Pod-Perldoc-3.28.01-501.fc39.noarch                                      
  perl-Pod-Simple-1:3.45-4.fc39.noarch                                          
  perl-Pod-Usage-4:2.03-500.fc39.noarch                                         
  perl-Scalar-List-Utils-5:1.63-500.fc39.s390x                                  
  perl-SelectSaver-1.02-500.fc39.noarch                                         
  perl-Socket-4:2.037-3.fc39.s390x                                              
  perl-Storable-1:3.32-500.fc39.s390x                                           
  perl-Symbol-1.09-500.fc39.noarch                                              
  perl-Term-ANSIColor-5.01-501.fc39.noarch                                      
  perl-Term-Cap-1.18-500.fc39.noarch                                            
  perl-Text-ParseWords-3.31-500.fc39.noarch                                     
  perl-Text-Tabs+Wrap-2023.0511-3.fc39.noarch                                   
  perl-Time-Local-2:1.350-3.fc39.noarch                                         
  perl-URI-5.21-1.fc40.noarch                                                   
  perl-base-2.27-500.fc39.noarch                                                
  perl-constant-1.33-501.fc39.noarch                                            
  perl-if-0.61.000-500.fc39.noarch                                              
  perl-interpreter-4:5.38.0-500.fc39.s390x                                      
  perl-lib-0.65-500.fc39.s390x                                                  
  perl-libnet-3.15-501.fc39.noarch                                              
  perl-libs-4:5.38.0-500.fc39.s390x                                             
  perl-locale-1.10-500.fc39.noarch                                              
  perl-mro-1.28-500.fc39.s390x                                                  
  perl-overload-1.37-500.fc39.noarch                                            
  perl-overloading-0.02-500.fc39.noarch                                         
  perl-parent-1:0.241-500.fc39.noarch                                           
  perl-podlators-1:5.01-500.fc39.noarch                                         
  perl-vars-1.05-500.fc39.noarch                                                
  zlib-ng-compat-devel-2.1.3-3.fc40.s390x                                       

Complete!
Finish: build setup for samtools-1.15.1-3.fc40.src.rpm
Start: rpmbuild samtools-1.15.1-3.fc40.src.rpm
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1689984000
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.Nfut8p
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf samtools-1.15.1
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/samtools-1.15.1.tar.bz2
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd samtools-1.15.1
+ rm -rf /builddir/build/BUILD/samtools-1.15.1-SPECPARTS
+ /usr/bin/mkdir -p /builddir/build/BUILD/samtools-1.15.1-SPECPARTS
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ rm -f INSTALL
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.VXtmW3
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd samtools-1.15.1
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ mv ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ mv ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
--- ./htslib-1.15.1/configure.backup	2022-04-07 15:42:52.000000000 +0000
+++ ./htslib-1.15.1/configure	2023-09-19 02:28:11.902330600 +0000
@@ -1697,7 +1697,7 @@
 #ifdef __cplusplus
 extern "C"
 #endif
-char $2 ();
+__attribute__ ((used)) char $2 ();
 /* The GNU C library defines this for functions which it implements
     to always fail with ENOSYS.  Some functions are actually named
     something starting with __ and the normal name is an alias.  */
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ mv ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./htslib-1.15.1/configure
+ diff -u ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ mv ./htslib-1.15.1/configure.backup ./htslib-1.15.1/configure
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
++ find . -name ltmain.sh
++ grep -q runstatedir=DIR ./configure
++ echo --runstatedir=/run
+ ./configure --build=s390x-redhat-linux --host=s390x-redhat-linux --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info 'CFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection' 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' --prefix=/usr --with-htslib=system
checking for gawk... gawk
checking for s390x-redhat-linux-gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for C compiler warning flags... -Wall
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for htslib/sam.h... yes
checking for hts_version in -lhts... yes
checking for NcursesW wide-character library... yes
checking for working ncursesw/curses.h... yes
checking for library containing cbreak... none required
checking for zlib.h... yes
checking for inflate in -lz... yes
checking for library containing regcomp... none required
configure: creating ./config.status
config.status: creating config.mk
config.status: creating config.h
+ /usr/bin/make -O -j2 V=1 VERBOSE=1
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_aux.o bam_aux.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam.o bam.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_index.o bam_index.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_plcmd.o bam_plcmd.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o sam_view.o sam_view.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_fastq.o bam_fastq.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_cat.o bam_cat.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_plbuf.o bam_plbuf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_md.o bam_md.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_reheader.o bam_reheader.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_rmdup.o bam_rmdup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_rmdupse.o bam_rmdupse.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_mate.o bam_mate.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_stat.o bam_stat.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_color.o bam_color.c
echo '#define SAMTOOLS_VERSION "1.15.1"' > version.h
echo '#define SAMTOOLS_CC "gcc"' >> version.h
echo '#define SAMTOOLS_CPPFLAGS ""' >> version.h
echo '#define SAMTOOLS_CFLAGS "-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection"' >> version.h
echo '#define SAMTOOLS_LDFLAGS "-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes "' >> version.h
echo '#define SAMTOOLS_HTSDIR ""' >> version.h
echo '#define SAMTOOLS_LIBS ""' >> version.h
echo '#define SAMTOOLS_CURSES_LIB "-lncursesw"' >> version.h
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam2bcf.o bam2bcf.c
bam2bcf.c: In function ‘bcf_call_glfgen’:
bam2bcf.c:81:33: warning: argument 2 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   81 |         bca->bases = (uint16_t*)realloc(bca->bases, 2 * bca->max_bases);
      |                                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/htslib/kstring.h:30,
                 from /usr/include/htslib/hts.h:37,
                 from bam2bcf.c:30:
/usr/include/stdlib.h:683:14: note: in a call to allocation function ‘realloc’ declared here
  683 | extern void *realloc (void *__ptr, size_t __size)
      |              ^~~~~~~
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o sample.o sample.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o cut_target.o cut_target.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_sort.o bam_sort.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o phase.o phase.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam2depth.o bam2depth.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o coverage.o coverage.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o padding.o padding.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bedcov.o bedcov.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o faidx.o faidx.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o dict.o dict.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bamshuf.o bamshuf.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o stats_isize.o stats_isize.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_flags.o bam_flags.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_split.o bam_split.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_tview.o bam_tview.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_tview_curses.o bam_tview_curses.c
bam_tview_curses.c: In function ‘tv_win_help’:
bam_tview_curses.c:333:14: warning: ‘base’ is used uninitialized [-Wuninitialized]
  333 |     tview_t* base=(tview_t*)base;
      |              ^~~~
bam_tview_curses.c:333:14: note: ‘base’ was declared here
  333 |     tview_t* base=(tview_t*)base;
      |              ^~~~
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o stats.o stats.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_tview_html.o bam_tview_html.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_lpileup.o bam_lpileup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_quickcheck.o bam_quickcheck.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_addrprg.o bam_addrprg.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o tmp_file.o tmp_file.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_ampliconclip.o bam_ampliconclip.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_markdup.o bam_markdup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_import.o bam_import.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_samples.o bam_samples.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o amplicon_stats.o amplicon_stats.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o consensus_pileup.o consensus_pileup.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bam_consensus.o bam_consensus.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o sam_opts.o sam_opts.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o sam_utils.o sam_utils.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bedidx.o bedidx.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o misc/ace2sam.o misc/ace2sam.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -DMAQ_LONGREADS -I.  -I./lz4  -c -o misc/maq2sam-long.o misc/maq2sam.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o misc/maq2sam-short.o misc/maq2sam.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o misc/md5fa.o misc/md5fa.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o misc/md5sum-lite.o misc/md5sum-lite.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o misc/wgsim.o misc/wgsim.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o lz4/lz4.o lz4/lz4.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o test/test.o test/test.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o test/merge/test_bam_translate.o test/merge/test_bam_translate.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o test/merge/test_rtrans_build.o test/merge/test_rtrans_build.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o test/split/test_count_rg.o test/split/test_count_rg.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o test/split/test_expand_format_string.o test/split/test_expand_format_string.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o test/split/test_filter_header_rg.o test/split/test_filter_header_rg.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o test/split/test_parse_args.o test/split/test_parse_args.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o test/vcf-miniview.o test/vcf-miniview.c
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o bamtk.o bamtk.c
ar -rcs libst.a sam_opts.o sam_utils.o bedidx.o
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o misc/ace2sam misc/ace2sam.o -lhts -lz 
gcc -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o misc/maq2sam-long misc/maq2sam-long.o -lz 
gcc -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o misc/maq2sam-short misc/maq2sam-short.o -lz 
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o misc/md5fa misc/md5fa.o -lhts -lz 
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o misc/md5sum-lite misc/md5sum-lite.o -lhts -lz 
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I.  -I./lz4  -c -o test/merge/test_trans_tbl_init.o test/merge/test_trans_tbl_init.c
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o test/merge/test_bam_translate test/merge/test_bam_translate.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o misc/wgsim misc/wgsim.o -lm -lhts -lz 
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o test/merge/test_rtrans_build test/merge/test_rtrans_build.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o test/split/test_count_rg test/split/test_count_rg.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o test/split/test_expand_format_string test/split/test_expand_format_string.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o test/split/test_filter_header_rg test/split/test_filter_header_rg.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o test/merge/test_trans_tbl_init test/merge/test_trans_tbl_init.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o test/split/test_parse_args test/split/test_parse_args.o test/test.o libst.a -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o test/vcf-miniview test/vcf-miniview.o -lhts -lz  -lpthread
gcc  -L./lz4 -Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o samtools bam.o bam_aux.o bam_index.o bam_plcmd.o sam_view.o bam_fastq.o bam_cat.o bam_md.o bam_plbuf.o bam_reheader.o bam_sort.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o bam2bcf.o sample.o cut_target.o phase.o bam2depth.o coverage.o padding.o bedcov.o bamshuf.o faidx.o dict.o stats.o stats_isize.o bam_flags.o bam_split.o bam_tview.o bam_tview_curses.o bam_tview_html.o bam_lpileup.o bam_quickcheck.o bam_addrprg.o bam_markdup.o tmp_file.o bam_ampliconclip.o amplicon_stats.o bam_import.o bam_samples.o bam_consensus.o consensus_pileup.o ./lz4/lz4.o libst.a -lhts -lncursesw -lm -lz  -lpthread
In function ‘bcf_call_glfgen’,
    inlined from ‘tv_pl_func’ at bam_tview.c:196:9:
bam2bcf.c:81:33: warning: argument 2 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   81 |         bca->bases = (uint16_t*)realloc(bca->bases, 2 * bca->max_bases);
      |                                 ^
/usr/include/stdlib.h: In function ‘tv_pl_func’:
/usr/include/stdlib.h:683:14: note: in a call to allocation function ‘realloc’ declared here
  683 | extern void *realloc (void *__ptr, size_t __size)
      |              ^
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.EzV7wM
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x
++ dirname /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd samtools-1.15.1
+ /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x 'INSTALL=/usr/bin/install -p'
mkdir -p -m 755 /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/share/man/man1
/usr/bin/install -p samtools /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin
/usr/bin/install -p misc/ace2sam misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/wgsim /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin
/usr/bin/install -p misc/blast2sam.pl misc/bowtie2sam.pl misc/export2sam.pl misc/fasta-sanitize.pl misc/interpolate_sam.pl misc/novo2sam.pl misc/plot-ampliconstats misc/plot-bamstats misc/psl2sam.pl misc/sam2vcf.pl misc/samtools.pl misc/seq_cache_populate.pl misc/soap2sam.pl misc/wgsim_eval.pl misc/zoom2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin
/usr/bin/install -p -m 644 doc/samtools*.1 misc/wgsim.1 /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/share/man/man1
++ grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/ace2sam /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/blast2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/bowtie2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/export2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/fasta-sanitize.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/interpolate_sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/maq2sam-long /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/maq2sam-short /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/md5fa /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/md5sum-lite /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/novo2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/plot-ampliconstats /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/plot-bamstats /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/psl2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/sam2vcf.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/samtools /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/samtools.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/seq_cache_populate.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/soap2sam.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/wgsim /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/wgsim_eval.pl /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/zoom2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/blast2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/bowtie2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/export2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/fasta-sanitize.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/interpolate_sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/novo2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/plot-ampliconstats
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/plot-bamstats
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/psl2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/sam2vcf.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/samtools.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/seq_cache_populate.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/soap2sam.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/wgsim_eval.pl
+ for file in $(grep -l '^#!/usr/bin/env perl' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/*)
+ sed -i '1 s|/usr/bin/env perl|/usr/bin/perl|' /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/bin/zoom2sam.pl
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.15.1-3.fc40 --unique-debug-suffix -1.15.1-3.fc40.s390x --unique-debug-src-base samtools-1.15.1-3.fc40.s390x --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/samtools-1.15.1
find-debuginfo: starting
Extracting debug info from 7 files
DWARF-compressing 7 files
sepdebugcrcfix: Updated 7 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/samtools-1.15.1-3.fc40.s390x
2442 blocks
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
+ /usr/lib/rpm/redhat/brp-python-hardlink
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.SDYSxT
+ umask 022
+ cd /builddir/build/BUILD
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd samtools-1.15.1
+ ldd samtools
+ grep -E '/lib(64)?/libhts\.so\.'
	libhts.so.3 => /lib64/libhts.so.3 (0x000003ffad780000)
+ make test
test/split/test_count_rg
test/split/test_expand_format_string
test/split/test_filter_header_rg
test/split/test_parse_args
REF_PATH=: test/test.pl --exec bgzip= ${TEST_OPTS:-}
bgzip -c -b 65272 -s 5 /tmp/LMenGvRQ3R/bgzip.dat.gz
.. ok

bgzip -c -b 979200 -s 6 /tmp/LMenGvRQ3R/bgzip.dat.gz
.. ok

bgzip -c -b 652804 -s 6 /tmp/LMenGvRQ3R/bgzip.dat.gz
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/LMenGvRQ3R/faidx.fa 3:11-13 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/LMenGvRQ3R/faidx.fa.gz 3:11-13 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/LMenGvRQ3R/faidx.fa 2:998-1003 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/LMenGvRQ3R/faidx.fa.gz 2:998-1003 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/LMenGvRQ3R/faidx.fa 1:100-104 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/LMenGvRQ3R/faidx.fa.gz 1:100-104 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/LMenGvRQ3R/faidx.fa 1:99998-100007 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools faidx /tmp/LMenGvRQ3R/faidx.fa.gz 1:99998-100007 | grep -v '^>'
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/LMenGvRQ3R/fqidx.fq 3:11-13
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/LMenGvRQ3R/fqidx.fq.gz 3:11-13
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/LMenGvRQ3R/fqidx.fq 2:998-1003
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/LMenGvRQ3R/fqidx.fq.gz 2:998-1003
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/LMenGvRQ3R/fqidx.fq 1:100-104
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/LMenGvRQ3R/fqidx.fq.gz 1:100-104
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/LMenGvRQ3R/fqidx.fq 1:99998-100007
.. ok

.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools fqidx /tmp/LMenGvRQ3R/fqidx.fq.gz 1:99998-100007
.. ok

.. ok

test_dict:
	/builddir/build/BUILD/samtools-1.15.1/samtools dict -a hf37d5 -s 'Homo floresiensis' -u ftp://example.com/hf37d5.fa.gz /builddir/build/BUILD/samtools-1.15.1/test/dat/dict.fa
.. ok

test_dict:
	/builddir/build/BUILD/samtools-1.15.1/samtools dict -a hf37d5 -s 'Homo floresiensis' -u ftp://example.com/hf37d5.fa.gz /tmp/LMenGvRQ3R/dict.fa.gz
.. ok

test_dict:
	cat /builddir/build/BUILD/samtools-1.15.1/test/dat/dict.fa | /builddir/build/BUILD/samtools-1.15.1/samtools dict -a hf37d5 -s 'Homo floresiensis' -u ftp://example.com/hf37d5.fa.gz
.. ok

test_dict:
	/builddir/build/BUILD/samtools-1.15.1/samtools dict -AH < /builddir/build/BUILD/samtools-1.15.1/test/dat/dict.alias.fa
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view /tmp/LMenGvRQ3R/large_chrom.bam ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view /tmp/LMenGvRQ3R/large_chrom.bam ref2:1-541556283
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam && cat /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -X /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /tmp/LMenGvRQ3R/test_input_1_b.bam.bai ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -O sam - -X -cp -R ref2 /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam.bai /tmp/LMenGvRQ3R/test_input_1_b.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -c /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.bam /tmp/LMenGvRQ3R/auto_indexed.csi && cat /tmp/LMenGvRQ3R/auto_indexed.csi
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.cram /tmp/LMenGvRQ3R/auto_indexed.crai && cat /tmp/LMenGvRQ3R/auto_indexed.crai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -c /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.sam /tmp/LMenGvRQ3R/auto_indexed.csi && cat /tmp/LMenGvRQ3R/auto_indexed.csi
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -@ 2 /tmp/LMenGvRQ3R/large_chrom.bam ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -@ 2 /tmp/LMenGvRQ3R/large_chrom.bam ref2:1-541556283
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -@ 2 /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam && cat /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -@ 2 -X /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /tmp/LMenGvRQ3R/test_input_1_b.bam.bai ref2
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -O sam - -X -cp -R ref2 /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam.bai /tmp/LMenGvRQ3R/test_input_1_b.bam.bai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -@ 2 -c /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.bam /tmp/LMenGvRQ3R/auto_indexed.csi && cat /tmp/LMenGvRQ3R/auto_indexed.csi
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -@ 2 /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.cram /tmp/LMenGvRQ3R/auto_indexed.crai && cat /tmp/LMenGvRQ3R/auto_indexed.crai
.. ok

test_index:
	/builddir/build/BUILD/samtools-1.15.1/samtools index -@ 2 -c /builddir/build/BUILD/samtools-1.15.1/test/dat/auto_indexed.tmp.sam /tmp/LMenGvRQ3R/auto_indexed.csi && cat /tmp/LMenGvRQ3R/auto_indexed.csi
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -b /tmp/LMenGvRQ3R/mpileup.bam.list -f /tmp/LMenGvRQ3R/mpileup.ref.fa.gz -r17:100-150
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -b /tmp/LMenGvRQ3R/mpileup.cram.list -f /tmp/LMenGvRQ3R/mpileup.ref.fa.gz -r17:100-150
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -b /tmp/LMenGvRQ3R/mpileup.bam.urllist -f /tmp/LMenGvRQ3R/mpileup.ref.fa.gz -r17:100-150
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -b /tmp/LMenGvRQ3R/mpileup.cram.urllist -f /tmp/LMenGvRQ3R/mpileup.ref.fa.gz -r17:100-150
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -B --ff 0x14 -f /tmp/LMenGvRQ3R/mpileup.ref.fa.gz -r17:1050-1060 /tmp/LMenGvRQ3R/mpileup.1.bam | grep -v mpileup
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup -B --ff 0x14 -f /tmp/LMenGvRQ3R/mpileup.ref.fa.gz -r17:1050-1060 /tmp/LMenGvRQ3R/mpileup.1.cram | grep -v mpileup
.. ok

test_mpileup:
	/builddir/build/BUILD/samtools-1.15.1/samtools mpileup /builddir/build/BUILD/samtools-1.15.1/test/mpileup/overlap.bam | grep 128814202
test/test.pl: no IO::Pty module or can't open pty; skipping usage tests
.. ok

test_usage:
	samtools
test_view:
	Generating test data file .................. done
	1: SAM -> BAM -> SAM                                        .. ok

	2: SAM -> uncompressed BAM                                  .. ok

	3: uncompressed BAM -> SAM and compare                      .. ok

	4: SAM -> fast compressed BAM                               .. ok

	5: fast compressed BAM -> SAM and compare                   .. ok

	6: SAM -> CRAM -> SAM (UR header tags)                      .. ok

	7: SAM -> CRAM -> SAM (M5 header tags)                      .. ok

	8: BAM -> CRAM with UR -> SAM                               .. ok

	9: SAM -> BAM (M5 header tags)                              .. ok

	10: SAM -> BAM -> CRAM -> SAM (M5 header tags)              .. ok

	11: CRAM -> BAM with UR                                     .. ok

	12: CRAM -> BAM with M5                                     .. ok

	13: SAM -> SAM via stdout                                   .. ok

	14: SAM -> BAM via stdout                                   .. ok

	15: SAM -> CRAM via stdout                                  .. ok

	16: SAM from stdin -> SAM                                   .. ok

	17: BAM from stdin -> SAM                                   .. ok

	18: CRAM from stdin -> SAM                                  .. ok

	19: samtools view -H (SAM input)                            .. ok

	20: samtools view -H (BAM input)                            .. ok

	21: samtools view -H (CRAM input)                           .. ok

	22: No headers (SAM input)                                  .. ok

	23: No headers (BAM input)                                  .. ok

	24: No headers (CRAM input)                                 .. ok

	25: Filter -f 128 (SAM input)                               .. ok

	26: Count -f 128 (SAM input)                                .. ok

	27: Filter -f 128 (BAM input)                               .. ok

	28: Count -f 128 (BAM input)                                .. ok

	29: Filter -f 128 (CRAM input)                              .. ok

	30: Count -f 128 (CRAM input)                               .. ok

	31: Filter -F 128 (SAM input)                               .. ok

	32: Count -F 128 (SAM input)                                .. ok

	33: Filter -F 128 (BAM input)                               .. ok

	34: Count -F 128 (BAM input)                                .. ok

	35: Filter -F 128 (CRAM input)                              .. ok

	36: Count -F 128 (CRAM input)                               .. ok

	37: Filter -F 128 -f 2 (SAM input)                          .. ok

	38: Count -F 128 -f 2 (SAM input)                           .. ok

	39: Filter -F 128 -f 2 (BAM input)                          .. ok

	40: Count -F 128 -f 2 (BAM input)                           .. ok

	41: Filter -F 128 -f 2 (CRAM input)                         .. ok

	42: Count -F 128 -f 2 (CRAM input)                          .. ok

	43: Filter -r grp2 (SAM input)                              .. ok

	44: Count -r grp2 (SAM input)                               .. ok

	45: Filter -r grp2 (BAM input)                              .. ok

	46: Count -r grp2 (BAM input)                               .. ok

	47: Filter -r grp2 (CRAM input)                             .. ok

	48: Count -r grp2 (CRAM input)                              .. ok

	49: Filter -R /tmp/LMenGvRQ3R/view.001.fogn (SAM input)     .. ok

	50: Count -R /tmp/LMenGvRQ3R/view.001.fogn (SAM input)      .. ok

	51: Filter -R /tmp/LMenGvRQ3R/view.001.fogn (BAM input)     .. ok

	52: Count -R /tmp/LMenGvRQ3R/view.001.fogn (BAM input)      .. ok

	53: Filter -R /tmp/LMenGvRQ3R/view.001.fogn (CRAM input)    .. ok

	54: Count -R /tmp/LMenGvRQ3R/view.001.fogn (CRAM input)     .. ok

	55: Filter -R /tmp/LMenGvRQ3R/view.001.fogn -r grp2 (SAM input).. ok

	56: Count -R /tmp/LMenGvRQ3R/view.001.fogn -r grp2 (SAM input).. ok

	57: Filter -R /tmp/LMenGvRQ3R/view.001.fogn -r grp2 (BAM input).. ok

	58: Count -R /tmp/LMenGvRQ3R/view.001.fogn -r grp2 (BAM input).. ok

	59: Filter -R /tmp/LMenGvRQ3R/view.001.fogn -r grp2 (CRAM input).. ok

	60: Count -R /tmp/LMenGvRQ3R/view.001.fogn -r grp2 (CRAM input).. ok

	61: Filter -r grp2 -R /tmp/LMenGvRQ3R/view.001.fogn (SAM input).. ok

	62: Count -r grp2 -R /tmp/LMenGvRQ3R/view.001.fogn (SAM input).. ok

	63: Filter -r grp2 -R /tmp/LMenGvRQ3R/view.001.fogn (BAM input).. ok

	64: Count -r grp2 -R /tmp/LMenGvRQ3R/view.001.fogn (BAM input).. ok

	65: Filter -r grp2 -R /tmp/LMenGvRQ3R/view.001.fogn (CRAM input).. ok

	66: Count -r grp2 -R /tmp/LMenGvRQ3R/view.001.fogn (CRAM input).. ok

	67: Filter -N /tmp/LMenGvRQ3R/view.001.forn (SAM input)     .. ok

	68: Count -N /tmp/LMenGvRQ3R/view.001.forn (SAM input)      .. ok

	69: Filter -N /tmp/LMenGvRQ3R/view.001.forn (BAM input)     .. ok

	70: Count -N /tmp/LMenGvRQ3R/view.001.forn (BAM input)      .. ok

	71: Filter -N /tmp/LMenGvRQ3R/view.001.forn (CRAM input)    .. ok

	72: Count -N /tmp/LMenGvRQ3R/view.001.forn (CRAM input)     .. ok

	73: Filter -d BC (SAM input)                                .. ok

	74: Count -d BC (SAM input)                                 .. ok

	75: Filter -d BC (BAM input)                                .. ok

	76: Count -d BC (BAM input)                                 .. ok

	77: Filter -d BC (CRAM input)                               .. ok

	78: Count -d BC (CRAM input)                                .. ok

	79: Filter -d BC:TGCA (SAM input)                           .. ok

	80: Count -d BC:TGCA (SAM input)                            .. ok

	81: Filter -d BC:TGCA (BAM input)                           .. ok

	82: Count -d BC:TGCA (BAM input)                            .. ok

	83: Filter -d BC:TGCA (CRAM input)                          .. ok

	84: Count -d BC:TGCA (CRAM input)                           .. ok

	85: Filter -D BC:/tmp/LMenGvRQ3R/view.001.fobc (SAM input)  .. ok

	86: Count -D BC:/tmp/LMenGvRQ3R/view.001.fobc (SAM input)   .. ok

	87: Filter -D BC:/tmp/LMenGvRQ3R/view.001.fobc (BAM input)  .. ok

	88: Count -D BC:/tmp/LMenGvRQ3R/view.001.fobc (BAM input)   .. ok

	89: Filter -D BC:/tmp/LMenGvRQ3R/view.001.fobc (CRAM input) .. ok

	90: Count -D BC:/tmp/LMenGvRQ3R/view.001.fobc (CRAM input)  .. ok

	91: Filter -D BC:/tmp/LMenGvRQ3R/view.001.fobc -d BC:TGCA (SAM input).. ok

	92: Count -D BC:/tmp/LMenGvRQ3R/view.001.fobc -d BC:TGCA (SAM input).. ok

	93: Filter -D BC:/tmp/LMenGvRQ3R/view.001.fobc -d BC:TGCA (BAM input).. ok

	94: Count -D BC:/tmp/LMenGvRQ3R/view.001.fobc -d BC:TGCA (BAM input).. ok

	95: Filter -D BC:/tmp/LMenGvRQ3R/view.001.fobc -d BC:TGCA (CRAM input).. ok

	96: Count -D BC:/tmp/LMenGvRQ3R/view.001.fobc -d BC:TGCA (CRAM input).. ok

	97: Filter -d BC:TGCA -D BC:/tmp/LMenGvRQ3R/view.001.fobc (SAM input).. ok

	98: Count -d BC:TGCA -D BC:/tmp/LMenGvRQ3R/view.001.fobc (SAM input).. ok

	99: Filter -d BC:TGCA -D BC:/tmp/LMenGvRQ3R/view.001.fobc (BAM input).. ok

	100: Count -d BC:TGCA -D BC:/tmp/LMenGvRQ3R/view.001.fobc (BAM input).. ok

	101: Filter -d BC:TGCA -D BC:/tmp/LMenGvRQ3R/view.001.fobc (CRAM input).. ok

	102: Count -d BC:TGCA -D BC:/tmp/LMenGvRQ3R/view.001.fobc (CRAM input).. ok

	103: Filter -D RG:/tmp/LMenGvRQ3R/view.001.fogn (SAM input) .. ok

	104: Count -D RG:/tmp/LMenGvRQ3R/view.001.fogn (SAM input)  .. ok

	105: Filter -D RG:/tmp/LMenGvRQ3R/view.001.fogn (BAM input) .. ok

	106: Count -D RG:/tmp/LMenGvRQ3R/view.001.fogn (BAM input)  .. ok

	107: Filter -D RG:/tmp/LMenGvRQ3R/view.001.fogn (CRAM input).. ok

	108: Count -D RG:/tmp/LMenGvRQ3R/view.001.fogn (CRAM input) .. ok

	109: Filter -d NE:TGCA (SAM input)                          .. ok

	110: Count -d NE:TGCA (SAM input)                           .. ok

	111: Filter -d NE:TGCA (BAM input)                          .. ok

	112: Count -d NE:TGCA (BAM input)                           .. ok

	113: Filter -d NE:TGCA (CRAM input)                         .. ok

	114: Count -d NE:TGCA (CRAM input)                          .. ok

	115: Filter -d TGCA (SAM input)                             samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/LMenGvRQ3R/view.test115.sam -h -d TGCA /tmp/LMenGvRQ3R/view.001.sam --no-PG


.. expected failure

	116: Count -d TGCA (SAM input)                              samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d TGCA /tmp/LMenGvRQ3R/view.001.sam --no-PG


.. expected failure

	117: Filter -d TGCA (BAM input)                             samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/LMenGvRQ3R/view.test117.sam -h -d TGCA /tmp/LMenGvRQ3R/view.test001.bam --no-PG


.. expected failure

	118: Count -d TGCA (BAM input)                              samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d TGCA /tmp/LMenGvRQ3R/view.test001.bam --no-PG


.. expected failure

	119: Filter -d TGCA (CRAM input)                            samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/LMenGvRQ3R/view.test119.sam -h -d TGCA /tmp/LMenGvRQ3R/view.test006.cram --no-PG


.. expected failure

	120: Count -d TGCA (CRAM input)                             samtools view: Invalid "tag:value" option: "TGCA"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d TGCA /tmp/LMenGvRQ3R/view.test006.cram --no-PG


.. expected failure

	121: Filter -D BClong:/tmp/LMenGvRQ3R/view.001.fobc (SAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/LMenGvRQ3R/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/LMenGvRQ3R/view.test121.sam -h -D BClong:/tmp/LMenGvRQ3R/view.001.fobc /tmp/LMenGvRQ3R/view.001.sam --no-PG


.. expected failure

	122: Count -D BClong:/tmp/LMenGvRQ3R/view.001.fobc (SAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/LMenGvRQ3R/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -D BClong:/tmp/LMenGvRQ3R/view.001.fobc /tmp/LMenGvRQ3R/view.001.sam --no-PG


.. expected failure

	123: Filter -D BClong:/tmp/LMenGvRQ3R/view.001.fobc (BAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/LMenGvRQ3R/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/LMenGvRQ3R/view.test123.sam -h -D BClong:/tmp/LMenGvRQ3R/view.001.fobc /tmp/LMenGvRQ3R/view.test001.bam --no-PG


.. expected failure

	124: Count -D BClong:/tmp/LMenGvRQ3R/view.001.fobc (BAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/LMenGvRQ3R/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -D BClong:/tmp/LMenGvRQ3R/view.001.fobc /tmp/LMenGvRQ3R/view.test001.bam --no-PG


.. expected failure

	125: Filter -D BClong:/tmp/LMenGvRQ3R/view.001.fobc (CRAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/LMenGvRQ3R/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/LMenGvRQ3R/view.test125.sam -h -D BClong:/tmp/LMenGvRQ3R/view.001.fobc /tmp/LMenGvRQ3R/view.test006.cram --no-PG


.. expected failure

	126: Count -D BClong:/tmp/LMenGvRQ3R/view.001.fobc (CRAM input)samtools view: Invalid "tag:file" option: "BClong:/tmp/LMenGvRQ3R/view.001.fobc"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -D BClong:/tmp/LMenGvRQ3R/view.001.fobc /tmp/LMenGvRQ3R/view.test006.cram --no-PG


.. expected failure

	127: Filter -d BC:ACGT -d RG:grp2 (SAM input)               samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/LMenGvRQ3R/view.test127.sam -h -d BC:ACGT -d RG:grp2 /tmp/LMenGvRQ3R/view.001.sam --no-PG


.. expected failure

	128: Count -d BC:ACGT -d RG:grp2 (SAM input)                samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d BC:ACGT -d RG:grp2 /tmp/LMenGvRQ3R/view.001.sam --no-PG


.. expected failure

	129: Filter -d BC:ACGT -d RG:grp2 (BAM input)               samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/LMenGvRQ3R/view.test129.sam -h -d BC:ACGT -d RG:grp2 /tmp/LMenGvRQ3R/view.test001.bam --no-PG


.. expected failure

	130: Count -d BC:ACGT -d RG:grp2 (BAM input)                samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d BC:ACGT -d RG:grp2 /tmp/LMenGvRQ3R/view.test001.bam --no-PG


.. expected failure

	131: Filter -d BC:ACGT -d RG:grp2 (CRAM input)              samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -o /tmp/LMenGvRQ3R/view.test131.sam -h -d BC:ACGT -d RG:grp2 /tmp/LMenGvRQ3R/view.test006.cram --no-PG


.. expected failure

	132: Count -d BC:ACGT -d RG:grp2 (CRAM input)               samtools view: Different tag "BC" was specified before: "RG:grp2"
	Failed command:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -c -d BC:ACGT -d RG:grp2 /tmp/LMenGvRQ3R/view.test006.cram --no-PG


.. expected failure

	133: Filter -d NM:13 (SAM input)                            .. ok

	134: Count -d NM:13 (SAM input)                             .. ok

	135: Filter -d NM:13 (BAM input)                            .. ok

	136: Count -d NM:13 (BAM input)                             .. ok

	137: Filter -d NM:13 (CRAM input)                           .. ok

	138: Count -d NM:13 (CRAM input)                            .. ok

	139: Filter -d ab:z (SAM input)                             .. ok

	140: Count -d ab:z (SAM input)                              .. ok

	141: Filter -d ab:z (BAM input)                             .. ok

	142: Count -d ab:z (BAM input)                              .. ok

	143: Filter -d ab:z (CRAM input)                            .. ok

	144: Count -d ab:z (CRAM input)                             .. ok

	145: Filter -l Library 2 (SAM input)                        .. ok

	146: Count -l Library 2 (SAM input)                         .. ok

	147: Filter -l Library 2 (BAM input)                        .. ok

	148: Count -l Library 2 (BAM input)                         .. ok

	149: Filter -l Library 2 (CRAM input)                       .. ok

	150: Count -l Library 2 (CRAM input)                        .. ok

	151: Filter -l Library 3 (SAM input)                        .. ok

	152: Count -l Library 3 (SAM input)                         .. ok

	153: Filter -l Library 3 (BAM input)                        .. ok

	154: Count -l Library 3 (BAM input)                         .. ok

	155: Filter -l Library 3 (CRAM input)                       .. ok

	156: Count -l Library 3 (CRAM input)                        .. ok

	157: Filter -q 50 (SAM input)                               .. ok

	158: Count -q 50 (SAM input)                                .. ok

	159: Filter -q 50 (BAM input)                               .. ok

	160: Count -q 50 (BAM input)                                .. ok

	161: Filter -q 50 (CRAM input)                              .. ok

	162: Count -q 50 (CRAM input)                               .. ok

	163: Filter -q 99 (SAM input)                               .. ok

	164: Count -q 99 (SAM input)                                .. ok

	165: Filter -q 99 (BAM input)                               .. ok

	166: Count -q 99 (BAM input)                                .. ok

	167: Filter -q 99 (CRAM input)                              .. ok

	168: Count -q 99 (CRAM input)                               .. ok

	169: Filter -q 100 (SAM input)                              .. ok

	170: Count -q 100 (SAM input)                               .. ok

	171: Filter -q 100 (BAM input)                              .. ok

	172: Count -q 100 (BAM input)                               .. ok

	173: Filter -q 100 (CRAM input)                             .. ok

	174: Count -q 100 (CRAM input)                              .. ok

	175: Filter -x fa (SAM input)                               .. ok

	176: Count -x fa (SAM input)                                .. ok

	177: Filter -x fa (BAM input)                               .. ok

	178: Count -x fa (BAM input)                                .. ok

	179: Filter -x fa (CRAM input)                              .. ok

	180: Count -x fa (CRAM input)                               .. ok

	181: Filter -x fa -x ha (SAM input)                         .. ok

	182: Count -x fa -x ha (SAM input)                          .. ok

	183: Filter -x fa -x ha (BAM input)                         .. ok

	184: Count -x fa -x ha (BAM input)                          .. ok

	185: Filter -x fa -x ha (CRAM input)                        .. ok

	186: Count -x fa -x ha (CRAM input)                         .. ok

	187: Filter -x fa,ha (SAM input)                            .. ok

	188: Count -x fa,ha (SAM input)                             .. ok

	189: Filter -x fa,ha (BAM input)                            .. ok

	190: Count -x fa,ha (BAM input)                             .. ok

	191: Filter -x fa,ha (CRAM input)                           .. ok

	192: Count -x fa,ha (CRAM input)                            .. ok

	193: Filter -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok

	194: Count -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok

	195: Filter -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok

	196: Count -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok

	197: Filter -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok

	198: Count -x ^RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok

	199: Filter --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok

	200: Count --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (SAM input).. ok

	201: Filter --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok

	202: Count --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (BAM input).. ok

	203: Filter --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok

	204: Count --keep-tag RG,BC,NM,MD,H0,aa,ab,za,ba,bb,bc,bd,be,bf,bg,ia (CRAM input).. ok

	205: Filter -x fa -r grp2 (SAM input)                       .. ok

	206: Count -x fa -r grp2 (SAM input)                        .. ok

	207: Filter -x fa -r grp2 (BAM input)                       .. ok

	208: Count -x fa -r grp2 (BAM input)                        .. ok

	209: Filter -x fa -r grp2 (CRAM input)                      .. ok

	210: Count -x fa -r grp2 (CRAM input)                       .. ok

	211: Filter -x RG -r grp2 (SAM input)                       .. ok

	212: Count -x RG -r grp2 (SAM input)                        .. ok

	213: Filter -x RG -r grp2 (BAM input)                       .. ok

	214: Count -x RG -r grp2 (BAM input)                        .. ok

	215: Filter -x RG -r grp2 (CRAM input)                      .. ok

	216: Count -x RG -r grp2 (CRAM input)                       .. ok

	217: Filter -m 10 (SAM input)                               .. ok

	218: Count -m 10 (SAM input)                                .. ok

	219: Filter -m 10 (BAM input)                               .. ok

	220: Count -m 10 (BAM input)                                .. ok

	221: Filter -m 10 (CRAM input)                              .. ok

	222: Count -m 10 (CRAM input)                               .. ok

	223: Filter -m 11 (SAM input)                               .. ok

	224: Count -m 11 (SAM input)                                .. ok

	225: Filter -m 11 (BAM input)                               .. ok

	226: Count -m 11 (BAM input)                                .. ok

	227: Filter -m 11 (CRAM input)                              .. ok

	228: Count -m 11 (CRAM input)                               .. ok

	229: Filter -m 15 (SAM input)                               .. ok

	230: Count -m 15 (SAM input)                                .. ok

	231: Filter -m 15 (BAM input)                               .. ok

	232: Count -m 15 (BAM input)                                .. ok

	233: Filter -m 15 (CRAM input)                              .. ok

	234: Count -m 15 (CRAM input)                               .. ok

	235: Filter -m 16 (SAM input)                               .. ok

	236: Count -m 16 (SAM input)                                .. ok

	237: Filter -m 16 (BAM input)                               .. ok

	238: Count -m 16 (BAM input)                                .. ok

	239: Filter -m 16 (CRAM input)                              .. ok

	240: Count -m 16 (CRAM input)                               .. ok

	241: Filter -e !(flag & 128) && (flag & 2) (SAM input)      .. ok

	242: Count -e !(flag & 128) && (flag & 2) (SAM input)       .. ok

	243: Filter -e !(flag & 128) && (flag & 2) (BAM input)      .. ok

	244: Count -e !(flag & 128) && (flag & 2) (BAM input)       .. ok

	245: Filter -e !(flag & 128) && (flag & 2) (CRAM input)     .. ok

	246: Count -e !(flag & 128) && (flag & 2) (CRAM input)      .. ok

	247: Filter -e [BC] (SAM input)                             .. ok

	248: Count -e [BC] (SAM input)                              .. ok

	249: Filter -e [BC] (BAM input)                             .. ok

	250: Count -e [BC] (BAM input)                              .. ok

	251: Filter -e [BC] (CRAM input)                            .. ok

	252: Count -e [BC] (CRAM input)                             .. ok

	253: Filter -e [BC] == "ACGT" || [BC] == "AATTCCGG" (SAM input).. ok

	254: Count -e [BC] == "ACGT" || [BC] == "AATTCCGG" (SAM input).. ok

	255: Filter -e [BC] == "ACGT" || [BC] == "AATTCCGG" (BAM input).. ok

	256: Count -e [BC] == "ACGT" || [BC] == "AATTCCGG" (BAM input).. ok

	257: Filter -e [BC] == "ACGT" || [BC] == "AATTCCGG" (CRAM input).. ok

	258: Count -e [BC] == "ACGT" || [BC] == "AATTCCGG" (CRAM input).. ok

	259: Filter -e mapq >= 50 (SAM input)                       .. ok

	260: Count -e mapq >= 50 (SAM input)                        .. ok

	261: Filter -e mapq >= 50 (BAM input)                       .. ok

	262: Count -e mapq >= 50 (BAM input)                        .. ok

	263: Filter -e mapq >= 50 (CRAM input)                      .. ok

	264: Count -e mapq >= 50 (CRAM input)                       .. ok

	265: Filter -e mapq >= 99 (SAM input)                       .. ok

	266: Count -e mapq >= 99 (SAM input)                        .. ok

	267: Filter -e mapq >= 99 (BAM input)                       .. ok

	268: Count -e mapq >= 99 (BAM input)                        .. ok

	269: Filter -e mapq >= 99 (CRAM input)                      .. ok

	270: Count -e mapq >= 99 (CRAM input)                       .. ok

	271: Filter -e mapq >= 100 (SAM input)                      .. ok

	272: Count -e mapq >= 100 (SAM input)                       .. ok

	273: Filter -e mapq >= 100 (BAM input)                      .. ok

	274: Count -e mapq >= 100 (BAM input)                       .. ok

	275: Filter -e mapq >= 100 (CRAM input)                     .. ok

	276: Count -e mapq >= 100 (CRAM input)                      .. ok

	277: 1bp reads file SAM -> BAM -> SAM                       .. ok

	278: 1bp reads file SAM -> CRAM -> SAM                      .. ok

	278: Region  Z (BAM input)                                  .. ok

	279: Count  Z (BAM input)                                   .. ok

	280: Region  Z (CRAM input)                                 .. ok

	281: Count  Z (CRAM input)                                  .. ok

	282: Region  Z:30 (BAM input)                               .. ok

	283: Count  Z:30 (BAM input)                                .. ok

	284: Region  Z:30 (CRAM input)                              .. ok

	285: Count  Z:30 (CRAM input)                               .. ok

	286: Region  Z:20-40 (BAM input)                            .. ok

	287: Count  Z:20-40 (BAM input)                             .. ok

	288: Region  Z:20-40 (CRAM input)                           .. ok

	289: Count  Z:20-40 (CRAM input)                            .. ok

	290: Region  ref1 (BAM input)                               .. ok

	291: Count  ref1 (BAM input)                                .. ok

	292: Region  ref1 (CRAM input)                              .. ok

	293: Count  ref1 (CRAM input)                               .. ok

	294: Region  ref1:15 (BAM input)                            .. ok

	295: Count  ref1:15 (BAM input)                             .. ok

	296: Region  ref1:15 (CRAM input)                           .. ok

	297: Count  ref1:15 (CRAM input)                            .. ok

	298: Region  ref1:15-45 (BAM input)                         .. ok

	299: Count  ref1:15-45 (BAM input)                          .. ok

	300: Region  ref1:15-45 (CRAM input)                        .. ok

	301: Count  ref1:15-45 (CRAM input)                         .. ok

	302: Region  ref1:15-45 ref2 (BAM input)                    .. ok

	303: Count  ref1:15-45 ref2 (BAM input)                     .. ok

	304: Region  ref1:15-45 ref2 (CRAM input)                   .. ok

	305: Count  ref1:15-45 ref2 (CRAM input)                    .. ok

	306: Region  ref1:15-45 ref2:16 (BAM input)                 .. ok

	307: Count  ref1:15-45 ref2:16 (BAM input)                  .. ok

	308: Region  ref1:15-45 ref2:16 (CRAM input)                .. ok

	309: Count  ref1:15-45 ref2:16 (CRAM input)                 .. ok

	310: Region  ref1:15-45 ref2:16-31 (BAM input)              .. ok

	311: Count  ref1:15-45 ref2:16-31 (BAM input)               .. ok

	312: Region  ref1:15-45 ref2:16-31 (CRAM input)             .. ok

	313: Count  ref1:15-45 ref2:16-31 (CRAM input)              .. ok

	314: Region  ref1:15-15 ref1:45-45 (BAM input)              .. ok

	315: Count  ref1:15-15 ref1:45-45 (BAM input)               .. ok

	316: Region  ref1:15-15 ref1:45-45 (CRAM input)             .. ok

	317: Count  ref1:15-15 ref1:45-45 (CRAM input)              .. ok

	318: Region -f 128 ref1 (BAM input)                         .. ok

	319: Count -f 128 ref1 (BAM input)                          .. ok

	320: Region -f 128 ref1 (CRAM input)                        .. ok

	321: Count -f 128 ref1 (CRAM input)                         .. ok

	322: Region -q 50 ref1:15-45 (BAM input)                    .. ok

	323: Count -q 50 ref1:15-45 (BAM input)                     .. ok

	324: Region -q 50 ref1:15-45 (CRAM input)                   .. ok

	325: Count -q 50 ref1:15-45 (CRAM input)                    .. ok

	326: Region -r grp2 ref1:15-45 (BAM input)                  .. ok

	327: Count -r grp2 ref1:15-45 (BAM input)                   .. ok

	328: Region -r grp2 ref1:15-45 (CRAM input)                 .. ok

	329: Count -r grp2 ref1:15-45 (CRAM input)                  .. ok

	330: Region  * (BAM input)                                  .. ok

	331: Count  * (BAM input)                                   .. ok

	332: Region  * (CRAM input)                                 .. ok

	333: Count  * (CRAM input)                                  .. ok

	334: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed  (BAM input).. ok

	335: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed  (BAM input).. ok

	336: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed  (CRAM input).. ok

	337: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed  (CRAM input).. ok

	338: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.02.bed  (BAM input).. ok

	339: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.02.bed  (BAM input).. ok

	340: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.02.bed  (CRAM input).. ok

	341: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.02.bed  (CRAM input).. ok

	342: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed  (BAM input).. ok

	343: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed  (BAM input).. ok

	344: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed  (CRAM input).. ok

	345: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed  (CRAM input).. ok

	346: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.02.bed  (BAM input).. ok

	347: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.02.bed  (BAM input).. ok

	348: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.02.bed  (CRAM input).. ok

	349: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.02.bed  (CRAM input).. ok

	350: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z (BAM input).. ok

	351: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z (BAM input).. ok

	352: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z (CRAM input).. ok

	353: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z (CRAM input).. ok

	354: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:30 (BAM input).. ok

	355: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:30 (BAM input).. ok

	356: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:30 (CRAM input).. ok

	357: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:30 (CRAM input).. ok

	358: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:10-30 (BAM input).. ok

	359: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:10-30 (BAM input).. ok

	360: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:10-30 (CRAM input).. ok

	361: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:10-30 (CRAM input).. ok

	362: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:25-35 (BAM input).. ok

	363: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:25-35 (BAM input).. ok

	364: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:25-35 (CRAM input).. ok

	365: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.002.01.bed Z:25-35 (CRAM input).. ok

	366: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:11-16 (BAM input).. ok

	367: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:11-16 (BAM input).. ok

	368: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:11-16 (CRAM input).. ok

	369: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:11-16 (CRAM input).. ok

	370: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref2 (BAM input).. ok

	371: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref2 (BAM input).. ok

	372: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref2 (CRAM input).. ok

	373: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref2 (CRAM input).. ok

	374: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (BAM input).. ok

	375: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (BAM input).. ok

	376: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (CRAM input).. ok

	377: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed ref1:1-15 ref1:44-45 (CRAM input).. ok

	378: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1  (BAM input).. ok

	379: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1  (BAM input).. ok

	380: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1  (CRAM input).. ok

	381: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1  (CRAM input).. ok

	382: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -f 128  (BAM input).. ok

	383: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -f 128  (BAM input).. ok

	384: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -f 128  (CRAM input).. ok

	385: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -f 128  (CRAM input).. ok

	386: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -q 5  (BAM input).. ok

	387: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -q 5  (BAM input).. ok

	388: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -q 5  (CRAM input).. ok

	389: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -q 5  (CRAM input).. ok

	390: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1 ref1:11-16 (BAM input).. ok

	391: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1 ref1:11-16 (BAM input).. ok

	392: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1 ref1:11-16 (CRAM input).. ok

	393: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -r grp1 ref1:11-16 (CRAM input).. ok

	394: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap  (BAM input).. ok

	395: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap  (BAM input).. ok

	396: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap  (CRAM input).. ok

	397: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap  (CRAM input).. ok

	398: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap ref1:11-30 (BAM input).. ok

	399: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap ref1:11-30 (BAM input).. ok

	400: Region -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap ref1:11-30 (CRAM input).. ok

	401: Count -L /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.01.bed -M --unmap ref1:11-30 (CRAM input).. ok

	402: Make BAM with no M5/UR tags                            .. ok

	403: Add @SQ with -t (SAM -> SAM)                           .. ok

	404: Add @SQ with -T (SAM -> SAM)                           .. ok

	405: Add @SQ with -t (BAM -> SAM)                           .. ok

	406: Add @SQ with -T (BAM -> SAM)                           .. ok

	407: Add @SQ with -t (SAM -> BAM)                           .. ok

	408: Add @SQ with -T (SAM -> BAM)                           .. ok

	409: Add @SQ with -t (BAM -> BAM)                           .. ok

	410: Add @SQ with -T (BAM -> BAM)                           .. ok

	411: Add @SQ with -t (SAM -> CRAM)                          .. ok

	412: Add @SQ with -T (SAM -> CRAM)                          .. ok

	413: Add @SQ with -t (BAM -> CRAM)                          .. ok

	414: Add @SQ with -T (BAM -> CRAM)                          .. ok

	415: Make CRAM with no UR field                             .. ok

	416: Decoding CRAM with no UR field via -T                  .. ok

	417: CIGAR B-operator removal                               .. ok

	418: Big SAM -> BAM                                         .. ok

	419: Big SAM -> BAM (2 threads)                             .. ok

	420: Big SAM -> BAM (4 threads)                             .. ok

	421: Big SAM -> CRAM                                        .. ok

	422: Big SAM -> CRAM (2 threads)                            .. ok

	423: Big SAM -> CRAM (4 threads)                            .. ok

	424: Subsample 0.2 (SAM input) ............ ok

	425: Subsample 0.5 (SAM input) ............ ok

	426: Subsample 0.8 (SAM input) ............ ok

	427: Subsample 0.2 (BAM input) ............ ok

	428: Subsample 0.5 (BAM input) ............ ok

	429: Subsample 0.8 (BAM input) ............ ok

	430: Subsample 0.2 (CRAM input) ............ ok

	431: Subsample 0.5 (CRAM input) ............ ok

	432: Subsample 0.8 (CRAM input) ............ ok

	433: SAM add PG                                             .. ok

	434: Unset dup flag, remove dt and do tags                  .. ok

	435: Unmap dup flagged reads.                               .. ok

	436: Unmap dup flagged reads.                               .. ok

	437: fetch pairs                                            .. ok

	438: fetch pairs                                            .. ok

	439: fetch pairs                                            .. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 0 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 1 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 5 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 29 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 30 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -n 0 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -n 1 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -n 5 /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_head:
	/builddir/build/BUILD/samtools-1.15.1/samtools head -h 5 -n 5 < /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.sam
.. ok

test_cat:
	Generating test data file .................. done
	Generate BAM file #1                                        .. ok

	Generate CRAM file #1                                       .. ok

	Generating test data file .................. done
	Generate BAM file #2                                        .. ok

	Generate CRAM file #2                                       .. ok

	Generating test data file .................. done
	Generate BAM file #3                                        .. ok

	Generate CRAM file #3                                       .. ok

	Generating test data file .................. done
	Generate BAM file #4                                        .. ok

	Generate CRAM file #4                                       .. ok

	1: cat BAM files                                            .. ok

	2: cat recompressed BAM files                               .. ok

	3: cat CRAM files                                           .. ok

	4: cat BAM files to stdout                                  .. ok

	5: cat recompressed BAM files to stdout                     .. ok

	6: cat CRAM files to stdout                                 .. ok

	7: cat BAM files with new header                            .. ok

	8: cat recompressed BAM files with new header               .. ok

	9: cat CRAM files with new header                           .. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -0 test/bam2fq/1.1.fq.expected  | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -0 /builddir/build/BUILD/samtools-1.15.1/test/0.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -s test/bam2fq/1.1.fq.expected  | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -0 /builddir/build/BUILD/samtools-1.15.1/test/0.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -s test/bam2fq/5.s.fq.expected  | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/5.1.fq.expected test/bam2fq/5.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -N -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -i -1 test/bam2fq/12.1.fq.expected -2 test/bam2fq/12.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -i --index-format 'i*i*' -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import --barcode-tag OX -i -1 test/bam2fq/12.1.fq.expected -2 test/bam2fq/12.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq --barcode-tag OX -i --index-format 'i*i*' -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -T "" -1 test/bam2fq/6.1.fq.expected -2 test/bam2fq/6.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -N -T RG,BC,QT -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import -T "*" -1 test/bam2fq/7.1.fq.expected -2 test/bam2fq/7.2.fq.expected | /builddir/build/BUILD/samtools-1.15.1/samtools fastq -N -T RG,BC,QT,MD,ia -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected -R rgid
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected -r ID:rgid
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/bam2fq/1.1.fq.expected test/bam2fq/1.2.fq.expected -r '@RG	ID:rgid'
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/import/2.interleaved.fq -T ""
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/import/3.interleaved.fq -i
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/import/4.aux.fq -T "*"
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/import/4.aux.fq -T ""
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import test/import/4.aux.fq -T XZ,XA,AA
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import --i1 test/import/5-i1.fq --i2  test/import/5-i2.fq --r1 test/import/5-r1.fq --r2 test/import/5-r2.fq
.. ok

test_import:
	/builddir/build/BUILD/samtools-1.15.1/samtools import --i1 test/import/5-i1.fq --i2  test/import/5-i2.fq --r1 test/import/5-r1.fq --r2 test/import/5-r2.fq --barcode-tag OX --quality-tag BZ
.. ok

test_bam2fq:
	Generate BAM file                                           .. ok

	Generate CRAM file                                          .. ok

	1: fastq  (SAM input)                                       [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	2: fastq -n (SAM input)                                     [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	3: fastq  (BAM input)                                       [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	4: fastq -n (BAM input)                                     [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	5: fastq  (CRAM input)                                      [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	6: fastq -n (CRAM input)                                    [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.002.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.003.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.010.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC -N --index-format 'n*i*' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc_split.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -N -t -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -N -t -T MD,ia -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC -i --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --barcode-tag BC -i --index-format 'i*i*' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -i --index-format 'i*i*' -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.703.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -N -1 /builddir/build/BUILD/samtools-1.15.1/test/o.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/o.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fasta  -N -1 /builddir/build/BUILD/samtools-1.15.1/test/o.fa -2 /builddir/build/BUILD/samtools-1.15.1/test/o.fa /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -N -o /builddir/build/BUILD/samtools-1.15.1/test/o.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -N -s /tmp/LMenGvRQ3R/bam2fq.discard.s.fq -0 /tmp/LMenGvRQ3R/bam2fq.discard.0.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  -T ba,bb,bc,bd,be,bf,bg /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.013.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq  --index-format 'i8n1i8' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i1.fq --i2 /builddir/build/BUILD/samtools-1.15.1/test/i2.fq -0 /builddir/build/BUILD/samtools-1.15.1/test/0.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.014.sam
.. ok

test_bam2fq:
	Generate BAM file (2 threads)                               .. ok

	Generate CRAM file (2 threads)                              .. ok

	1: fastq  (SAM input) (2 threads)                           [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	2: fastq -n (SAM input) (2 threads)                         [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	3: fastq  (BAM input) (2 threads)                           [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	4: fastq -n (BAM input) (2 threads)                         [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	5: fastq  (CRAM input) (2 threads)                          [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

	6: fastq -n (CRAM input) (2 threads)                        [M::bam2fq_mainloop] discarded 0 singletons
[M::bam2fq_mainloop] processed 36 reads
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.002.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.003.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -O --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.010.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -N --index-format 'n*i*' --i1 /builddir/build/BUILD/samtools-1.15.1/test/bc_split.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -t -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -t -T MD,ia -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -i --index-format 'n2i2' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.004.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --barcode-tag BC -i --index-format 'i*i*' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i.fq -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -i --index-format 'i*i*' -s /builddir/build/BUILD/samtools-1.15.1/test/s.fq -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.005.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -1 /builddir/build/BUILD/samtools-1.15.1/test/1.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/2.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.703.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -1 /builddir/build/BUILD/samtools-1.15.1/test/o.fq -2 /builddir/build/BUILD/samtools-1.15.1/test/o.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fasta -@ 2 -N -1 /builddir/build/BUILD/samtools-1.15.1/test/o.fa -2 /builddir/build/BUILD/samtools-1.15.1/test/o.fa /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -o /builddir/build/BUILD/samtools-1.15.1/test/o.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -N -s /tmp/LMenGvRQ3R/bam2fq.discard.s.fq -0 /tmp/LMenGvRQ3R/bam2fq.discard.0.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.001.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 -T ba,bb,bc,bd,be,bf,bg /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.013.sam
.. ok

test_bam2fq:
	/builddir/build/BUILD/samtools-1.15.1/samtools fastq -@ 2 --index-format 'i8n1i8' --i1 /builddir/build/BUILD/samtools-1.15.1/test/i1.fq --i2 /builddir/build/BUILD/samtools-1.15.1/test/i2.fq -0 /builddir/build/BUILD/samtools-1.15.1/test/0.fq /builddir/build/BUILD/samtools-1.15.1/test/dat/bam2fq.014.sam
.. ok

test_depad:
	Generate BAM file                                           .. ok

	depad  (SAM input)                                          .. ok

	depad -s (SAM input)                                        .. ok

	depad -u (SAM input)                                        .. ok

	depad -1 (SAM input)                                        .. ok

	depad  (BAM input)                                          .. ok

	depad -s (BAM input)                                        .. ok

	depad -u (BAM input)                                        .. ok

	depad -1 (BAM input)                                        .. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/1_map_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/1_map_cigar_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/2_equal_cigar_full_seq.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/2_equal_cigar_full_seq_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/3_map_cigar_equal_seq.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/3_map_cigar_equal_seq_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/4_X_cigar_full_seq.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/4_X_cigar_full_seq_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/5_insert_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/5_insert_cigar_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa -i 0 /builddir/build/BUILD/samtools-1.15.1/test/stat/5_insert_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/7_supp.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/7_supp_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/8_secondary.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/8_secondary_large.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -S RG -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/1_map_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -S RG -r /builddir/build/BUILD/samtools-1.15.1/test/stat/test.fa /builddir/build/BUILD/samtools-1.15.1/test/stat/10_map_cigar.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -t /builddir/build/BUILD/samtools-1.15.1/test/stat/11.stats.targets /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam ref1:10-24 ref1:30-46 ref1:39-56 | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -g 4 -t /builddir/build/BUILD/samtools-1.15.1/test/stat/11.stats.targets /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -g 4 /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam ref1:10-24 ref1:30-46 ref1:39-56 | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/12_overlaps.bam -t /builddir/build/BUILD/samtools-1.15.1/test/stat/12_3reads.bed | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/12_overlaps.bam -p -t /builddir/build/BUILD/samtools-1.15.1/test/stat/12_3reads.bed | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/12_overlaps.bam -t /builddir/build/BUILD/samtools-1.15.1/test/stat/12_2reads.bed | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/12_overlaps.bam -p -t /builddir/build/BUILD/samtools-1.15.1/test/stat/12_2reads.bed | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_ok.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_ok_ox_bz.sam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_fail_bc_length.sam | tail -n+4

	/builddir/build/BUILD/samtools-1.15.1/test/stat/13.barcodes.fail.expected: No such file or directory
.. expected failure

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_fail_hyphen.sam | tail -n+4

	/builddir/build/BUILD/samtools-1.15.1/test/stat/13.barcodes.fail.expected: No such file or directory
.. expected failure

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats /builddir/build/BUILD/samtools-1.15.1/test/stat/13_barcodes_fail_qt_length.sam | tail -n+4

	/builddir/build/BUILD/samtools-1.15.1/test/stat/13.barcodes.fail.expected: No such file or directory
.. expected failure

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -I s1 /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -I grp2 /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -I grp3 /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam | tail -n+4
.. ok

test_stats:
	/builddir/build/BUILD/samtools-1.15.1/samtools stats -I Sample /builddir/build/BUILD/samtools-1.15.1/test/stat/11_target.bam | tail -n+4
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam -b /tmp/5vsuZK5t9d - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -r -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -cp -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a_regex.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b_regex.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -o - -s 1 -O sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -p -c -t PG -O SAM - /tmp/LMenGvRQ3R/merge.tag.1.bam /tmp/LMenGvRQ3R/merge.tag.2.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -s 1 -p -c -n -t PG -O SAM - /tmp/LMenGvRQ3R/merge.tag.3.bam /tmp/LMenGvRQ3R/merge.tag.4.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge --no-PG -O SAM - /builddir/build/BUILD/samtools-1.15.1/test/merge/test_no_pg_rg_co.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge --no-PG -O SAM -L /builddir/build/BUILD/samtools-1.15.1/test/merge/merge.bed - /tmp/LMenGvRQ3R/merge.bed.1.bam /tmp/LMenGvRQ3R/merge.bed.2.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam -b /tmp/uvnK3Nc9A8 - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -r -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -cp -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -O sam - /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a_regex.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b_regex.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -o - -s 1 -O sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_b.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_c.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -p -c -t PG -O SAM - /tmp/LMenGvRQ3R/merge.tag.1.bam /tmp/LMenGvRQ3R/merge.tag.2.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 -s 1 -p -c -n -t PG -O SAM - /tmp/LMenGvRQ3R/merge.tag.3.bam /tmp/LMenGvRQ3R/merge.tag.4.bam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 --no-PG -O SAM - /builddir/build/BUILD/samtools-1.15.1/test/merge/test_no_pg_rg_co.sam
.. ok

test_merge:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -@ 2 --no-PG -O SAM -L /builddir/build/BUILD/samtools-1.15.1/test/merge/merge.bed - /tmp/LMenGvRQ3R/merge.bed.1.bam /tmp/LMenGvRQ3R/merge.bed.2.bam
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/LMenGvRQ3R/sortout
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -f /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/LMenGvRQ3R/sortout.bam
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -o /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/LMenGvRQ3R/sorttmp
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -n -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -t RG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -n -t RG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -t AS -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -t FI -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/LMenGvRQ3R/sortout
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -f /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/LMenGvRQ3R/sortout.bam
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -o /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam /tmp/LMenGvRQ3R/sorttmp
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -n -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -t RG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -n -t RG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -t AS -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam -O SAM -o -
.. ok

test_sort:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -@ 2 -t FI -m 10M /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam -O SAM -o -
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate --output-fmt=sam -O /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -o /builddir/build/BUILD/samtools-1.15.1/test/collate/collate1.tmp.sam  /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -o /builddir/build/BUILD/samtools-1.15.1/test/collate/collate2.tmp.sam  /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.15.1/test/collate/collate2.tmp
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate --output-fmt=sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.15.1/test/collate/collate3.tmp
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate --output-fmt=sam -f /builddir/build/BUILD/samtools-1.15.1/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.15.1/test/collate/1_fast_collate.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate --output-fmt=sam -f -r 4 /builddir/build/BUILD/samtools-1.15.1/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.15.1/test/collate/2_fast_collate_with_tmp.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 --output-fmt=sam -O /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 -o /builddir/build/BUILD/samtools-1.15.1/test/collate/collate1.tmp.sam  /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 -o /builddir/build/BUILD/samtools-1.15.1/test/collate/collate2.tmp.sam  /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.15.1/test/collate/collate2.tmp
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 --output-fmt=sam /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_d.sam /builddir/build/BUILD/samtools-1.15.1/test/collate/collate3.tmp
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 --output-fmt=sam -f /builddir/build/BUILD/samtools-1.15.1/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.15.1/test/collate/1_fast_collate.sam
.. ok

test_collate:
	/builddir/build/BUILD/samtools-1.15.1/samtools collate -@ 2 --output-fmt=sam -f -r 4 /builddir/build/BUILD/samtools-1.15.1/test/collate/fast_collate.sam -o /builddir/build/BUILD/samtools-1.15.1/test/collate/2_fast_collate_with_tmp.sam
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/1_coord_sort.sam -

	ERR: [bam_mating_core] ERROR: Coordinate sorted, require grouped/sorted by queryname.

.. expected failure

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/2_isize_overflow.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/3_reverse_read_pp_lt.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/4_reverse_read_pp_equal.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -cO sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/5_ct.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -cO sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/6_ct_replace.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/7_two_read_mapped.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/8_isize_overflow_64bit.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/1_coord_sort.sam -

	ERR: [bam_mating_core] ERROR: Coordinate sorted, require grouped/sorted by queryname.

.. expected failure

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/2_isize_overflow.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/3_reverse_read_pp_lt.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/4_reverse_read_pp_equal.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -cO sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/5_ct.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -cO sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/6_ct_replace.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/7_two_read_mapped.sam -
.. ok

test_fixmate:
	/builddir/build/BUILD/samtools-1.15.1/samtools fixmate -@ 2 -O sam /builddir/build/BUILD/samtools-1.15.1/test/fixmate/8_isize_overflow_64bit.sam -
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools calmd -uAr /builddir/build/BUILD/samtools-1.15.1/test/dat/mpileup.1.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/mpileup.ref.fa
.. ok

/builddir/build/BUILD/samtools-1.15.1/samtools calmd -@ 2 -uAr /builddir/build/BUILD/samtools-1.15.1/test/dat/mpileup.1.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/mpileup.ref.fa
.. ok

test_idxstat:
	/builddir/build/BUILD/samtools-1.15.1/samtools idxstats /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.bam
.. ok

test_idxstat:
	/builddir/build/BUILD/samtools-1.15.1/samtools idxstats /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.cram
.. ok

test_idxstat:
	/builddir/build/BUILD/samtools-1.15.1/samtools idxstats /builddir/build/BUILD/samtools-1.15.1/test/dat/test_input_1_a.sam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/1.quickcheck.badeof.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/2.quickcheck.badheader.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/3.quickcheck.ok.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/4.quickcheck.ok.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/5.quickcheck.scramble30.truncated.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/6.quickcheck.cram21.ok.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/7.quickcheck.cram30.ok.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/8.quickcheck.cram21.truncated.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/9.quickcheck.cram30.truncated.cram
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/10.quickcheck.notargets.bam
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck -v  /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/1.quickcheck.badeof.bam /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/2.quickcheck.badheader.bam /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/3.quickcheck.ok.bam /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/4.quickcheck.ok.bam /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/5.quickcheck.scramble30.truncated.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/6.quickcheck.cram21.ok.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/7.quickcheck.cram30.ok.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/8.quickcheck.cram21.truncated.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/9.quickcheck.cram30.truncated.cram /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/10.quickcheck.notargets.bam | sed 's,.*/quickcheck/,,'
.. ok

test_quickcheck:
	/builddir/build/BUILD/samtools-1.15.1/samtools quickcheck -uv /builddir/build/BUILD/samtools-1.15.1/test/quickcheck/10.quickcheck.notargets.bam | sed 's,.*/quickcheck/,,'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.bam | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v21.cram | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v30.cram | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader --in-place /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v21.cram && /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v21.cram | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader --in-place /builddir/build/BUILD/samtools-1.15.1/test/reheader/hdr.sam /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v30.cram && /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v30.cram | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader -c "sed 's/2014 Genome/2019 Genome/g'" /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.bam | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_reheader:
	/builddir/build/BUILD/samtools-1.15.1/samtools reheader -c "sed 's/2014 Genome/2019 Genome/g'" /builddir/build/BUILD/samtools-1.15.1/test/dat/view.001.tmp.v30.cram | /builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG | perl -pe 's/	VN:.*//'
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -m overwrite_all /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -m orphan_only /builddir/build/BUILD/samtools-1.15.1/test/addrprg/2_fixup_orphan.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -R '1#9' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -r '@RG\tID:1#8\tCN:SC' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/4_fixup_norg.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -m overwrite_all -R '1#8' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -r 'ID:1#8' -r 'CN:SC' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/4_fixup_norg.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -O sam -w -r '@RG\tID:1#8\tCN:Sanger\tDS:Testing the editing code.' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -m overwrite_all /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -m orphan_only /builddir/build/BUILD/samtools-1.15.1/test/addrprg/2_fixup_orphan.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -R '1#9' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -r '@RG\tID:1#8\tCN:SC' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/4_fixup_norg.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -m overwrite_all -R '1#8' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -r 'ID:1#8' -r 'CN:SC' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/4_fixup_norg.sam
.. ok

test_addrprg:
	/builddir/build/BUILD/samtools-1.15.1/samtools addreplacerg -@ 2 -O sam -w -r '@RG\tID:1#8\tCN:Sanger\tDS:Testing the editing code.' /builddir/build/BUILD/samtools-1.15.1/test/addrprg/1_fixup.sam
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/1_name_sort.sam -

	ERR: [markdup] error: queryname sorted, must be sorted by coordinate.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/2_bad_order.sam -

	ERR: [markdup] error: not in coordinate sorted order.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/3_missing_mc.sam -

	ERR: [markdup] error: no MC tag. Please run samtools fixmate on file first.
[markdup] error: unable to assign pair hash key.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/4_missing_ms.sam -

	ERR: [markdup] error: no ms score tag. Please run samtools fixmate on file first.
[markdup] error: no ms score tag. Please run samtools fixmate on file first.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/5_markdup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -O sam -r --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/6_remove_dups.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/7_mark_supp_dup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 100 --mode s -t -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/8_optical_dup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 2500 --mode s -t --include-fails -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/9_optical_dup_qcfail.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 2500 --mode s -t -O sam --no-PG -S /builddir/build/BUILD/samtools-1.15.1/test/markdup/10_optical_chain.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+):([[:digit:]]+)$' --no-PG -S /builddir/build/BUILD/samtools-1.15.1/test/markdup/10_optical_chain.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+):([[:print:]]+)' --coords-order xyt --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/11_optical_dup_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+)' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/11_optical_dup_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+)$' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/12_optical_chain_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/1_name_sort.sam -

	ERR: [markdup] error: queryname sorted, must be sorted by coordinate.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/2_bad_order.sam -

	ERR: [markdup] error: not in coordinate sorted order.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/3_missing_mc.sam -

	ERR: [markdup] error: no MC tag. Please run samtools fixmate on file first.
[markdup] error: unable to assign pair hash key.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/4_missing_ms.sam -

	ERR: [markdup] error: no ms score tag. Please run samtools fixmate on file first.
[markdup] error: no ms score tag. Please run samtools fixmate on file first.

.. expected failure

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/5_markdup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -O sam -r --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/6_remove_dups.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/7_mark_supp_dup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 100 --mode s -t -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/8_optical_dup.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 2500 --mode s -t --include-fails -O sam --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/9_optical_dup_qcfail.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 2500 --mode s -t -O sam --no-PG -S /builddir/build/BUILD/samtools-1.15.1/test/markdup/10_optical_chain.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+):([[:digit:]]+)$' --no-PG -S /builddir/build/BUILD/samtools-1.15.1/test/markdup/10_optical_chain.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+):([[:print:]]+)' --coords-order xyt --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/11_optical_dup_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 100 --mode s -t -O sam --read-coords '^([0-9]+):([0-9]+)' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/11_optical_dup_regex.sam -
.. ok

test_markdup:
	/builddir/build/BUILD/samtools-1.15.1/samtools markdup -@ 2 -S -d 2500 --mode s -t -O sam --read-coords '([[:digit:]]+):([[:digit:]]+)$' --coords-order xy --no-PG /builddir/build/BUILD/samtools-1.15.1/test/markdup/12_optical_chain_regex.sam -
.. ok

test_bedcov:
	/builddir/build/BUILD/samtools-1.15.1/samtools bedcov /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bed /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bam
.. ok

test_bedcov:
	/builddir/build/BUILD/samtools-1.15.1/samtools bedcov -j /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bed /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bam
.. ok

test_bedcov:
	/builddir/build/BUILD/samtools-1.15.1/samtools bedcov -g512 -G2048 /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov_gG.bed /builddir/build/BUILD/samtools-1.15.1/test/bedcov/bedcov.bam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.15.1/samtools split  --output-fmt sam -u /builddir/build/BUILD/samtools-1.15.1/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.15.1/test/split/split.tmp.%!.%. /builddir/build/BUILD/samtools-1.15.1/test/split/split.sam
.. ok

test_split:
	/builddir/build/BUILD/samtools-1.15.1/samtools split  -@ 2 --output-fmt sam -u /builddir/build/BUILD/samtools-1.15.1/test/split/split.tmp.unk.sam -f /builddir/build/BUILD/samtools-1.15.1/test/split/split.tmp.%!.%. /builddir/build/BUILD/samtools-1.15.1/test/split/split.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG /tmp/LMenGvRQ3R/longref.sam.gz
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG /tmp/LMenGvRQ3R/longref.sam.gz CHROMOSOME_I:10000000114-10000000168
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools view -h --no-PG -L /builddir/build/BUILD/samtools-1.15.1/test/large_pos/test.bed /tmp/LMenGvRQ3R/longref.sam.gz
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort -O sam --no-PG -m 10M /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref_name.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools merge -O sam --no-PG - /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref.sam /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref2.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools depth /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools depth -b /builddir/build/BUILD/samtools-1.15.1/test/large_pos/test.bed /builddir/build/BUILD/samtools-1.15.1/test/large_pos/longref.sam
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools tview -d T -p CHROMOSOME_I:10000000000 /tmp/LMenGvRQ3R/longref.sam.gz
.. ok

test_large_positions:
	/builddir/build/BUILD/samtools-1.15.1/samtools sort    -O sam --no-PG -n -m 10M test/large_pos/longref3.sam |
                     /builddir/build/BUILD/samtools-1.15.1/samtools fixmate -O sam --no-PG - - |
                     /builddir/build/BUILD/samtools-1.15.1/samtools sort    -O sam --no-PG -m 10M
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --hard-clip -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --strand -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --strand --filter-len 185 -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --keep-tag --output-fmt=sam --strand --fail-len 185 -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG  --keep-tag --output-fmt=sam --original -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG --output-fmt=sam -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip --no-PG  --keep-tag --output-fmt=sam --strand --both-ends -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/2_both_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --hard-clip -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --strand -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --strand --filter-len 185 -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --keep-tag --output-fmt=sam --strand --fail-len 185 -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG  --keep-tag --output-fmt=sam --original -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG --output-fmt=sam -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_test_data.sam
.. ok

test_ampliconclip:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconclip -@ 2 --no-PG  --keep-tag --output-fmt=sam --strand --both-ends -b /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/2_both_test_data.sam
.. ok

test_ampliconstats:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconstats -@ 2 -S -t 50 -d 1,20,100 /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/ac_test.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_hard_clipped.expected.sam /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_soft_clipped.expected.sam /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/1_soft_clipped_strand.expected.sam /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/2_both_clipped.expected.sam | egrep -v 'Samtools version|Command line'
.. ok

test_ampliconstats:
	/builddir/build/BUILD/samtools-1.15.1/samtools ampliconstats -@ 2 -c 0 /builddir/build/BUILD/samtools-1.15.1/test/ampliconclip/multi_ref.bed /builddir/build/BUILD/samtools-1.15.1/test/ampliconstats/mixed_clipped.sam | egrep -v 'Samtools version|Command line'
.. ok


Number of tests:
    total            .. 807
    passed           .. 776
    failed           .. 0
    expected failure .. 31
    unexpected pass  .. 0

test/merge/test_bam_translate test/merge/test_bam_translate.tmp
test/merge/test_rtrans_build
test/merge/test_trans_tbl_init
cd test/mpileup && AWK="gawk" ../regression.sh mpileup.reg

=== Testing mpileup.reg regressions ===

EXPECTED FAIL: Task failed, but expected to fail;
when running $samtools mpileup -ABQ0 -a -l xx.bed3 xx#depth3.bam

Expected   passes:   118
Unexpected passes:   0
Expected   failures: 1
Unexpected failures: 0
=> PASS
cd test/mpileup && AWK="gawk" ../regression.sh depth.reg

=== Testing depth.reg regressions ===

EXPECTED FAIL: Task failed, but expected to fail;
when running $samtools depth -a -b xx.bed3 xx#depth3.bam

Expected   passes:   47
Unexpected passes:   0
Expected   failures: 1
Unexpected failures: 0
=> PASS
cd test/consensus && AWK="gawk" ../regression.sh consensus.reg

=== Testing consensus.reg regressions ===

Expected   passes:   62
Unexpected passes:   0
Expected   failures: 0
Unexpected failures: 0
=> PASS
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: samtools-1.15.1-3.fc40.s390x
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.DSMR7d
+ umask 022
+ cd /builddir/build/BUILD
+ cd samtools-1.15.1
+ DOCDIR=/builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/share/doc/samtools
+ export LC_ALL=
+ LC_ALL=
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/share/doc/samtools
+ cp -pr /builddir/build/BUILD/samtools-1.15.1/AUTHORS /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/share/doc/samtools
+ cp -pr /builddir/build/BUILD/samtools-1.15.1/ChangeLog.old /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/share/doc/samtools
+ cp -pr /builddir/build/BUILD/samtools-1.15.1/NEWS /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/share/doc/samtools
+ cp -pr /builddir/build/BUILD/samtools-1.15.1/examples /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/share/doc/samtools
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.Ko54Kh
+ umask 022
+ cd /builddir/build/BUILD
+ cd samtools-1.15.1
+ LICENSEDIR=/builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/share/licenses/samtools
+ export LC_ALL=
+ LC_ALL=
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/share/licenses/samtools
+ cp -pr /builddir/build/BUILD/samtools-1.15.1/LICENSE /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x/usr/share/licenses/samtools
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: samtools = 1.15.1-3.fc40 samtools(s390-64) = 1.15.1-3.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/perl libc.so.6()(64bit) libc.so.6(GLIBC_2.2)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libhts.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2)(64bit) libm.so.6(GLIBC_2.29)(64bit) libncursesw.so.6()(64bit) libtinfo.so.6()(64bit) libz.so.1()(64bit) rtld(GNU_HASH)
Processing files: samtools-debugsource-1.15.1-3.fc40.s390x
Provides: samtools-debugsource = 1.15.1-3.fc40 samtools-debugsource(s390-64) = 1.15.1-3.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: samtools-debuginfo-1.15.1-3.fc40.s390x
Provides: debuginfo(build-id) = 0bba816b8f79c77b058b6cde9d3701da616baa89 debuginfo(build-id) = 129bfd4a383f207dadb06b1334f12bbdb4dbb96f debuginfo(build-id) = 2cc5ad27938cd3cdd9083b29994cc5645cfebc32 debuginfo(build-id) = a2b996922c15fd5242093fc734ebafac9a783742 debuginfo(build-id) = c1984d14dbdabfb2784395e71957e00d4c013f36 debuginfo(build-id) = e5e5d8843b6235b3a3a0cecb9afb582dc0beeceb debuginfo(build-id) = f8dfbc6622e9f3bbeb039584ca78ece48647063e samtools-debuginfo = 1.15.1-3.fc40 samtools-debuginfo(s390-64) = 1.15.1-3.fc40
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: samtools-debugsource(s390-64) = 1.15.1-3.fc40
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x
Wrote: /builddir/build/RPMS/samtools-1.15.1-3.fc40.s390x.rpm
Wrote: /builddir/build/RPMS/samtools-debuginfo-1.15.1-3.fc40.s390x.rpm
Wrote: /builddir/build/RPMS/samtools-debugsource-1.15.1-3.fc40.s390x.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.sGGjBr
+ umask 022
+ cd /builddir/build/BUILD
+ cd samtools-1.15.1
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/samtools-1.15.1-3.fc40.s390x
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.7yqVOR
+ umask 022
+ cd /builddir/build/BUILD
+ rm -rf /builddir/build/BUILD/samtools-1.15.1-SPECPARTS
+ rm -rf samtools-1.15.1 samtools-1.15.1.gemspec
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild samtools-1.15.1-3.fc40.src.rpm
Finish: build phase for samtools-1.15.1-3.fc40.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-s390x-1695090297.690834/root/var/log/dnf.rpm.log
/var/lib/mock/fedora-rawhide-s390x-1695090297.690834/root/var/log/dnf.librepo.log
/var/lib/mock/fedora-rawhide-s390x-1695090297.690834/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/samtools-1.15.1-3.fc40.src.rpm) Config(child) 1 minutes 24 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "samtools",
            "epoch": null,
            "version": "1.15.1",
            "release": "3.fc40",
            "arch": "s390x"
        },
        {
            "name": "samtools-debuginfo",
            "epoch": null,
            "version": "1.15.1",
            "release": "3.fc40",
            "arch": "s390x"
        },
        {
            "name": "samtools",
            "epoch": null,
            "version": "1.15.1",
            "release": "3.fc40",
            "arch": "src"
        },
        {
            "name": "samtools-debugsource",
            "epoch": null,
            "version": "1.15.1",
            "release": "3.fc40",
            "arch": "s390x"
        }
    ]
}
RPMResults finished