Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c1ca' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/6408290-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64 Version: 0.69 PID: 7414 Logging PID: 7415 Task: {'appstream': False, 'background': True, 'build_id': 6408290, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': 'b43ac973914abe9602e626ce93aee30180d953cc', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/R-Rhtslib', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'R-Rhtslib', 'package_version': '1.28.0-4%{dist}', 'project_dirname': 'zlib-ng-compat-mpb', 'project_name': 'zlib-ng-compat-mpb', 'project_owner': 'tuliom', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/tuliom/zlib-ng-compat-mpb/fedora-rawhide-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}], 'sandbox': 'tuliom/zlib-ng-compat-mpb--tuliom', 'source_json': {}, 'source_type': None, 'submitter': 'tuliom', 'tags': [], 'task_id': '6408290-fedora-rawhide-x86_64', 'timeout': 115200, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/R-Rhtslib /var/lib/copr-rpmbuild/workspace/workdir-s8l8vkw2/R-Rhtslib --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/tuliom/zlib-ng-compat-mpb/R-Rhtslib', '/var/lib/copr-rpmbuild/workspace/workdir-s8l8vkw2/R-Rhtslib', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-s8l8vkw2/R-Rhtslib'... Running: git checkout b43ac973914abe9602e626ce93aee30180d953cc -- cmd: ['git', 'checkout', 'b43ac973914abe9602e626ce93aee30180d953cc', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-s8l8vkw2/R-Rhtslib rc: 0 stdout: stderr: Note: switching to 'b43ac973914abe9602e626ce93aee30180d953cc'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at b43ac97 automatic import of R-Rhtslib Running: copr-distgit-client sources /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-s8l8vkw2/R-Rhtslib rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading Rhtslib_1.28.0.tar.gz INFO: Reading stdout from command: curl --help all INFO: Calling: curl -H Pragma: -o Rhtslib_1.28.0.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/tuliom/zlib-ng-compat-mpb/R-Rhtslib/Rhtslib_1.28.0.tar.gz/md5/68bbb8477444f2c8e7bbf7720ece120f/Rhtslib_1.28.0.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 1436k 100 1436k 0 0 11.2M 0 --:--:-- --:--:-- --:--:-- 11.3M INFO: Reading stdout from command: md5sum Rhtslib_1.28.0.tar.gz Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-s8l8vkw2/R-Rhtslib/R-Rhtslib.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-s8l8vkw2/R-Rhtslib --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1695197193.315340 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 5.1.1 starting (python version = 3.11.3, NVR = mock-5.1.1-1.fc38)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-s8l8vkw2/R-Rhtslib/R-Rhtslib.spec) Config(fedora-rawhide-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 5.1.1 INFO: Mock Version: 5.1.1 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1695197193.315340/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1695197193.315340/root INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/425fb5454b3431c1e3e28f0e88345f5e4505c12213cf7af87f2b9b4dd92910dc/merged INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/425fb5454b3431c1e3e28f0e88345f5e4505c12213cf7af87f2b9b4dd92910dc/merged) with podman image umount INFO: Package manager dnf detected and used (fallback) INFO: Bootstrap image not marked ready Start(bootstrap): installing dnf tooling No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 20 MB/s | 7.1 MB 00:00 fedora 21 MB/s | 73 MB 00:03 Last metadata expiration check: 0:00:01 ago on Wed Sep 20 08:06:45 2023. Package python3-dnf-4.16.2-4.fc40.noarch is already installed. Dependencies resolved. ================================================================================ Package Arch Version Repository Size ================================================================================ Installing: python3-dnf-plugins-core noarch 4.4.2-1.fc39 fedora 293 k Installing dependencies: dbus-libs x86_64 1:1.14.10-1.fc40 fedora 155 k python3-dateutil noarch 1:2.8.2-10.fc39 fedora 355 k python3-dbus x86_64 1.3.2-4.fc39 fedora 157 k python3-distro noarch 1.8.0-6.fc39 fedora 49 k python3-six noarch 1.16.0-12.fc39 fedora 41 k python3-systemd x86_64 235-5.fc39 fedora 107 k Transaction Summary ================================================================================ Install 7 Packages Total download size: 1.1 M Installed size: 3.5 M Downloading Packages: (1/7): dbus-libs-1.14.10-1.fc40.x86_64.rpm 382 kB/s | 155 kB 00:00 (2/7): python3-dbus-1.3.2-4.fc39.x86_64.rpm 385 kB/s | 157 kB 00:00 (3/7): python3-distro-1.8.0-6.fc39.noarch.rpm 563 kB/s | 49 kB 00:00 (4/7): python3-dateutil-2.8.2-10.fc39.noarch.rp 625 kB/s | 355 kB 00:00 (5/7): python3-six-1.16.0-12.fc39.noarch.rpm 522 kB/s | 41 kB 00:00 (6/7): python3-systemd-235-5.fc39.x86_64.rpm 1.3 MB/s | 107 kB 00:00 (7/7): python3-dnf-plugins-core-4.4.2-1.fc39.no 1.2 MB/s | 293 kB 00:00 -------------------------------------------------------------------------------- Total 1.6 MB/s | 1.1 MB 00:00 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Preparing : 1/1 Installing : python3-systemd-235-5.fc39.x86_64 1/7 Installing : python3-six-1.16.0-12.fc39.noarch 2/7 Installing : python3-dateutil-1:2.8.2-10.fc39.noarch 3/7 Installing : python3-distro-1.8.0-6.fc39.noarch 4/7 Installing : dbus-libs-1:1.14.10-1.fc40.x86_64 5/7 Installing : python3-dbus-1.3.2-4.fc39.x86_64 6/7 Installing : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 7/7 Running scriptlet: python3-dnf-plugins-core-4.4.2-1.fc39.noarch 7/7 Verifying : dbus-libs-1:1.14.10-1.fc40.x86_64 1/7 Verifying : python3-dateutil-1:2.8.2-10.fc39.noarch 2/7 Verifying : python3-dbus-1.3.2-4.fc39.x86_64 3/7 Verifying : python3-distro-1.8.0-6.fc39.noarch 4/7 Verifying : python3-dnf-plugins-core-4.4.2-1.fc39.noarch 5/7 Verifying : python3-six-1.16.0-12.fc39.noarch 6/7 Verifying : python3-systemd-235-5.fc39.x86_64 7/7 Installed: dbus-libs-1:1.14.10-1.fc40.x86_64 python3-dateutil-1:2.8.2-10.fc39.noarch python3-dbus-1.3.2-4.fc39.x86_64 python3-distro-1.8.0-6.fc39.noarch python3-dnf-plugins-core-4.4.2-1.fc39.noarch python3-six-1.16.0-12.fc39.noarch python3-systemd-235-5.fc39.x86_64 Complete! Finish(bootstrap): installing dnf tooling Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1695197193.315340/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf detected and used (direct choice) Start: installing minimal buildroot with dnf No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 12 MB/s | 7.1 MB 00:00 fedora 771 kB/s | 73 MB 01:36 Last metadata expiration check: 0:00:02 ago on Wed Sep 20 08:07:44 2023. Dependencies resolved. ================================================================================ Package Arch Version Repo Size ================================================================================ Installing group/module packages: bash x86_64 5.2.15-5.fc39 fedora 1.8 M bzip2 x86_64 1.0.8-16.fc39 fedora 52 k coreutils x86_64 9.4-1.fc40 fedora 1.1 M cpio x86_64 2.14-4.fc39 fedora 279 k diffutils x86_64 3.10-3.fc39 fedora 398 k fedora-release-common noarch 40-0.7 fedora 18 k findutils x86_64 1:4.9.0-6.fc40 fedora 492 k gawk x86_64 5.2.2-2.fc39 fedora 1.1 M glibc-minimal-langpack x86_64 2.38.9000-9.fc40 fedora 74 k grep x86_64 3.11-5.fc40 fedora 298 k gzip x86_64 1.12-6.fc39 fedora 166 k info x86_64 7.0.3-3.fc39 fedora 182 k patch x86_64 2.7.6-22.fc39 fedora 125 k redhat-rpm-config noarch 270-1.fc40 copr_base 74 k rpm-build x86_64 4.18.99-1.fc40 copr_base 71 k sed x86_64 4.8-14.fc39 fedora 306 k shadow-utils x86_64 2:4.14.0-1.fc40 fedora 1.3 M tar x86_64 2:1.35-2.fc40 fedora 864 k unzip x86_64 6.0-62.fc39 fedora 184 k util-linux x86_64 2.39.2-1.fc40 copr_base 1.1 M which x86_64 2.21-40.fc39 fedora 42 k xz x86_64 5.4.4-1.fc39 fedora 556 k Installing dependencies: alternatives x86_64 1.25-1.fc39 fedora 39 k ansible-srpm-macros noarch 1-11.fc39 fedora 21 k audit-libs x86_64 3.1.2-4.fc40 fedora 117 k authselect x86_64 1.4.2-3.fc39 fedora 144 k authselect-libs x86_64 1.4.2-3.fc39 fedora 249 k basesystem noarch 11-18.fc39 fedora 7.2 k binutils x86_64 2.41-5.fc40 fedora 6.3 M binutils-gold x86_64 2.41-5.fc40 fedora 796 k bzip2-libs x86_64 1.0.8-16.fc39 fedora 41 k ca-certificates noarch 2023.2.60_v7.0.306-3.fc40 fedora 837 k coreutils-common x86_64 9.4-1.fc40 fedora 2.1 M cracklib x86_64 2.9.11-2.fc40 copr_base 83 k crypto-policies noarch 20230731-1.git5ed06e0.fc39 fedora 99 k curl x86_64 8.3.0-1.fc40 copr_base 354 k cyrus-sasl-lib x86_64 2.1.28-11.fc40 copr_base 793 k debugedit x86_64 5.0-10.fc39 fedora 77 k dwz x86_64 0.15-3.fc39 fedora 134 k ed x86_64 1.19-4.fc39 fedora 79 k efi-srpm-macros noarch 5-9.fc39 fedora 22 k elfutils x86_64 0.189-6.fc40 copr_base 530 k elfutils-debuginfod-client x86_64 0.189-6.fc40 copr_base 38 k elfutils-default-yama-scope noarch 0.189-6.fc40 copr_base 14 k elfutils-libelf x86_64 0.189-6.fc40 copr_base 195 k elfutils-libs x86_64 0.189-6.fc40 copr_base 259 k fedora-gpg-keys noarch 40-0.1 fedora 130 k fedora-release noarch 40-0.7 fedora 8.0 k fedora-release-identity-basic noarch 40-0.7 fedora 8.8 k fedora-repos noarch 40-0.1 fedora 9.4 k fedora-repos-rawhide noarch 40-0.1 fedora 9.0 k file x86_64 5.45-1.fc40 copr_base 50 k file-libs x86_64 5.45-1.fc40 copr_base 764 k filesystem x86_64 3.18-6.fc39 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-12.fc39 fedora 26 k forge-srpm-macros noarch 0.1.0-1.fc40 fedora 18 k fpc-srpm-macros noarch 1.3-8.fc39 fedora 7.4 k gdb-minimal x86_64 13.2-9.fc40 fedora 4.2 M gdbm-libs x86_64 1:1.23-4.fc39 fedora 56 k ghc-srpm-macros noarch 1.6.1-2.fc39 fedora 7.8 k glibc x86_64 2.38.9000-9.fc40 fedora 2.2 M glibc-common x86_64 2.38.9000-9.fc40 fedora 356 k glibc-gconv-extra x86_64 2.38.9000-9.fc40 fedora 1.6 M gmp x86_64 1:6.2.1-5.fc39 fedora 313 k gnat-srpm-macros noarch 6-3.fc39 fedora 8.8 k go-srpm-macros noarch 3.2.0-7.fc40 fedora 27 k jansson x86_64 2.13.1-7.fc39 fedora 44 k kernel-srpm-macros noarch 1.0-20.fc39 fedora 10 k keyutils-libs x86_64 1.6.1-7.fc39 fedora 31 k krb5-libs x86_64 1.21.2-1.fc40 fedora 765 k libacl x86_64 2.3.1-9.fc40 fedora 23 k libarchive x86_64 3.7.2-1.fc40 copr_base 408 k libattr x86_64 2.5.1-9.fc40 fedora 18 k libblkid x86_64 2.39.2-1.fc40 copr_base 116 k libbrotli x86_64 1.1.0-1.fc40 fedora 336 k libcap x86_64 2.48-7.fc39 fedora 68 k libcap-ng x86_64 0.8.3-8.fc40 fedora 32 k libcom_err x86_64 1.47.0-2.fc39 fedora 26 k libcurl x86_64 8.3.0-1.fc40 copr_base 344 k libdb x86_64 5.3.28-58.fc40 copr_base 759 k libeconf x86_64 0.5.2-1.fc40 fedora 30 k libevent x86_64 2.1.12-9.fc39 fedora 258 k libfdisk x86_64 2.39.2-1.fc40 copr_base 162 k libffi x86_64 3.4.4-4.fc39 fedora 40 k libgcc x86_64 13.2.1-1.fc40 copr_base 109 k libgomp x86_64 13.2.1-1.fc40 copr_base 319 k libidn2 x86_64 2.3.4-3.fc39 fedora 117 k libmount x86_64 2.39.2-1.fc40 copr_base 155 k libnghttp2 x86_64 1.56.0-1.fc40 copr_base 76 k libnsl2 x86_64 2.0.0-6.fc39 fedora 30 k libpkgconf x86_64 1.9.5-2.fc39 fedora 38 k libpsl x86_64 0.21.2-4.fc39 fedora 63 k libpwquality x86_64 1.4.5-6.fc39 fedora 120 k libselinux x86_64 3.5-5.fc39 fedora 87 k libsemanage x86_64 3.5-4.fc39 fedora 120 k libsepol x86_64 3.5-2.fc39 fedora 324 k libsigsegv x86_64 2.14-5.fc39 fedora 27 k libsmartcols x86_64 2.39.2-1.fc40 copr_base 67 k libssh x86_64 0.10.5-2.fc40 copr_base 211 k libssh-config noarch 0.10.5-2.fc40 copr_base 9.7 k libstdc++ x86_64 13.2.1-1.fc40 copr_base 860 k libtasn1 x86_64 4.19.0-3.fc39 fedora 74 k libtirpc x86_64 1.3.3-1.rc2.fc39 fedora 94 k libunistring x86_64 1.1-5.fc40 fedora 543 k libutempter x86_64 1.2.1-10.fc39 fedora 26 k libuuid x86_64 2.39.2-1.fc40 copr_base 28 k libverto x86_64 0.3.2-6.fc39 fedora 20 k libxcrypt x86_64 4.4.36-2.fc39 fedora 119 k libxml2 x86_64 2.11.5-1.fc40 copr_base 697 k libzstd x86_64 1.5.5-4.fc40 copr_base 309 k lua-libs x86_64 5.4.6-3.fc39 fedora 133 k lua-srpm-macros noarch 1-9.fc39 fedora 8.6 k lz4-libs x86_64 1.9.4-4.fc39 fedora 67 k mpfr x86_64 4.2.0-3.fc39 fedora 344 k ncurses-base noarch 6.4-7.20230520.fc40 fedora 88 k ncurses-libs x86_64 6.4-7.20230520.fc40 fedora 337 k ocaml-srpm-macros noarch 8-2.fc39 fedora 14 k openblas-srpm-macros noarch 2-14.fc39 fedora 7.5 k openldap x86_64 2.6.6-1.fc39 fedora 255 k openssl-libs x86_64 1:3.1.1-4.fc40 copr_base 2.2 M p11-kit x86_64 0.25.0-2.fc39 fedora 486 k p11-kit-trust x86_64 0.25.0-2.fc39 fedora 142 k package-notes-srpm-macros noarch 0.5-9.fc39 fedora 11 k pam x86_64 1.5.3-2.fc39 fedora 548 k pam-libs x86_64 1.5.3-2.fc39 fedora 58 k pcre2 x86_64 10.42-1.fc39.2 fedora 233 k pcre2-syntax noarch 10.42-1.fc39.2 fedora 143 k perl-srpm-macros noarch 1-51.fc39 fedora 8.0 k pkgconf x86_64 1.9.5-2.fc39 fedora 42 k pkgconf-m4 noarch 1.9.5-2.fc39 fedora 14 k pkgconf-pkg-config x86_64 1.9.5-2.fc39 fedora 9.6 k popt x86_64 1.19-3.fc39 fedora 66 k publicsuffix-list-dafsa noarch 20230812-1.fc40 fedora 57 k pyproject-srpm-macros noarch 1.9.0-2.fc39 fedora 14 k python-srpm-macros noarch 3.12-4.fc40 fedora 25 k qt5-srpm-macros noarch 5.15.10-2.fc39 fedora 8.3 k qt6-srpm-macros noarch 6.5.2-2.fc39 fedora 9.2 k readline x86_64 8.2-4.fc39 fedora 213 k rpm x86_64 4.18.99-1.fc40 copr_base 508 k rpm-build-libs x86_64 4.18.99-1.fc40 copr_base 96 k rpm-libs x86_64 4.18.99-1.fc40 copr_base 313 k rpm-sequoia x86_64 1.5.0-1.fc40 fedora 883 k rust-srpm-macros noarch 24-5.fc40 fedora 12 k setup noarch 2.14.4-1.fc39 fedora 154 k sqlite-libs x86_64 3.43.1-1.fc40 fedora 688 k systemd-libs x86_64 254.2-7.fc40 fedora 688 k tzdata noarch 2023c-3.fc40 fedora 718 k util-linux-core x86_64 2.39.2-1.fc40 copr_base 479 k xxhash-libs x86_64 0.8.2-1.fc39 fedora 37 k xz-libs x86_64 5.4.4-1.fc39 fedora 108 k zip x86_64 3.0-39.fc40 fedora 266 k zlib-ng-compat x86_64 2.1.3-4.fc40 copr_base 77 k zstd x86_64 1.5.5-4.fc40 copr_base 482 k Installing Groups: Buildsystem building group Transaction Summary ================================================================================ Install 153 Packages Total download size: 53 M Installed size: 182 M Downloading Packages: (1/153): cracklib-2.9.11-2.fc40.x86_64.rpm 1.6 MB/s | 83 kB 00:00 (2/153): cyrus-sasl-lib-2.1.28-11.fc40.x86_64.r 9.8 MB/s | 793 kB 00:00 (3/153): curl-8.3.0-1.fc40.x86_64.rpm 4.1 MB/s | 354 kB 00:00 (4/153): elfutils-0.189-6.fc40.x86_64.rpm 8.0 MB/s | 530 kB 00:00 (5/153): elfutils-debuginfod-client-0.189-6.fc4 1.0 MB/s | 38 kB 00:00 (6/153): elfutils-default-yama-scope-0.189-6.fc 420 kB/s | 14 kB 00:00 (7/153): elfutils-libelf-0.189-6.fc40.x86_64.rp 13 MB/s | 195 kB 00:00 (8/153): elfutils-libs-0.189-6.fc40.x86_64.rpm 10 MB/s | 259 kB 00:00 (9/153): file-5.45-1.fc40.x86_64.rpm 1.9 MB/s | 50 kB 00:00 (10/153): file-libs-5.45-1.fc40.x86_64.rpm 15 MB/s | 764 kB 00:00 (11/153): libarchive-3.7.2-1.fc40.x86_64.rpm 6.8 MB/s | 408 kB 00:00 (12/153): libblkid-2.39.2-1.fc40.x86_64.rpm 2.0 MB/s | 116 kB 00:00 (13/153): libcurl-8.3.0-1.fc40.x86_64.rpm 17 MB/s | 344 kB 00:00 (14/153): libfdisk-2.39.2-1.fc40.x86_64.rpm 14 MB/s | 162 kB 00:00 (15/153): libgcc-13.2.1-1.fc40.x86_64.rpm 5.4 MB/s | 109 kB 00:00 (16/153): libdb-5.3.28-58.fc40.x86_64.rpm 34 MB/s | 759 kB 00:00 (17/153): libgomp-13.2.1-1.fc40.x86_64.rpm 22 MB/s | 319 kB 00:00 (18/153): libmount-2.39.2-1.fc40.x86_64.rpm 15 MB/s | 155 kB 00:00 (19/153): libnghttp2-1.56.0-1.fc40.x86_64.rpm 8.2 MB/s | 76 kB 00:00 (20/153): libsmartcols-2.39.2-1.fc40.x86_64.rpm 7.4 MB/s | 67 kB 00:00 (21/153): libssh-0.10.5-2.fc40.x86_64.rpm 19 MB/s | 211 kB 00:00 (22/153): libssh-config-0.10.5-2.fc40.noarch.rp 1.0 MB/s | 9.7 kB 00:00 (23/153): libstdc++-13.2.1-1.fc40.x86_64.rpm 48 MB/s | 860 kB 00:00 (24/153): libuuid-2.39.2-1.fc40.x86_64.rpm 2.2 MB/s | 28 kB 00:00 (25/153): libxml2-2.11.5-1.fc40.x86_64.rpm 37 MB/s | 697 kB 00:00 (26/153): libzstd-1.5.5-4.fc40.x86_64.rpm 26 MB/s | 309 kB 00:00 (27/153): openssl-libs-3.1.1-4.fc40.x86_64.rpm 56 MB/s | 2.2 MB 00:00 (28/153): redhat-rpm-config-270-1.fc40.noarch.r 2.1 MB/s | 74 kB 00:00 (29/153): rpm-4.18.99-1.fc40.x86_64.rpm 17 MB/s | 508 kB 00:00 (30/153): rpm-build-4.18.99-1.fc40.x86_64.rpm 6.7 MB/s | 71 kB 00:00 (31/153): rpm-build-libs-4.18.99-1.fc40.x86_64. 8.7 MB/s | 96 kB 00:00 (32/153): rpm-libs-4.18.99-1.fc40.x86_64.rpm 24 MB/s | 313 kB 00:00 (33/153): util-linux-core-2.39.2-1.fc40.x86_64. 22 MB/s | 479 kB 00:00 (34/153): util-linux-2.39.2-1.fc40.x86_64.rpm 34 MB/s | 1.1 MB 00:00 (35/153): zlib-ng-compat-2.1.3-4.fc40.x86_64.rp 2.1 MB/s | 77 kB 00:00 (36/153): zstd-1.5.5-4.fc40.x86_64.rpm 16 MB/s | 482 kB 00:00 (37/153): ansible-srpm-macros-1-11.fc39.noarch. 412 kB/s | 21 kB 00:00 (38/153): alternatives-1.25-1.fc39.x86_64.rpm 610 kB/s | 39 kB 00:00 (39/153): authselect-libs-1.4.2-3.fc39.x86_64.r 9.0 MB/s | 249 kB 00:00 (40/153): basesystem-11-18.fc39.noarch.rpm 796 kB/s | 7.2 kB 00:00 (41/153): authselect-1.4.2-3.fc39.x86_64.rpm 1.5 MB/s | 144 kB 00:00 (42/153): bash-5.2.15-5.fc39.x86_64.rpm 21 MB/s | 1.8 MB 00:00 (43/153): audit-libs-3.1.2-4.fc40.x86_64.rpm 670 kB/s | 117 kB 00:00 (44/153): binutils-gold-2.41-5.fc40.x86_64.rpm 44 MB/s | 796 kB 00:00 (45/153): bzip2-libs-1.0.8-16.fc39.x86_64.rpm 1.5 MB/s | 41 kB 00:00 (46/153): bzip2-1.0.8-16.fc39.x86_64.rpm 1.1 MB/s | 52 kB 00:00 (47/153): ca-certificates-2023.2.60_v7.0.306-3. 37 MB/s | 837 kB 00:00 (48/153): coreutils-9.4-1.fc40.x86_64.rpm 32 MB/s | 1.1 MB 00:00 (49/153): cpio-2.14-4.fc39.x86_64.rpm 23 MB/s | 279 kB 00:00 (50/153): crypto-policies-20230731-1.git5ed06e0 7.4 MB/s | 99 kB 00:00 (51/153): debugedit-5.0-10.fc39.x86_64.rpm 697 kB/s | 77 kB 00:00 (52/153): diffutils-3.10-3.fc39.x86_64.rpm 16 MB/s | 398 kB 00:00 (53/153): dwz-0.15-3.fc39.x86_64.rpm 2.6 MB/s | 134 kB 00:00 (54/153): ed-1.19-4.fc39.x86_64.rpm 5.9 MB/s | 79 kB 00:00 (55/153): efi-srpm-macros-5-9.fc39.noarch.rpm 1.3 MB/s | 22 kB 00:00 (56/153): fedora-gpg-keys-40-0.1.noarch.rpm 9.3 MB/s | 130 kB 00:00 (57/153): fedora-release-40-0.7.noarch.rpm 913 kB/s | 8.0 kB 00:00 (58/153): fedora-release-common-40-0.7.noarch.r 1.4 MB/s | 18 kB 00:00 (59/153): fedora-release-identity-basic-40-0.7. 447 kB/s | 8.8 kB 00:00 (60/153): fedora-repos-40-0.1.noarch.rpm 715 kB/s | 9.4 kB 00:00 (61/153): fedora-repos-rawhide-40-0.1.noarch.rp 1.0 MB/s | 9.0 kB 00:00 (62/153): filesystem-3.18-6.fc39.x86_64.rpm 31 MB/s | 1.1 MB 00:00 (63/153): findutils-4.9.0-6.fc40.x86_64.rpm 1.4 MB/s | 492 kB 00:00 (64/153): fonts-srpm-macros-2.0.5-12.fc39.noarc 31 kB/s | 26 kB 00:00 (65/153): coreutils-common-9.4-1.fc40.x86_64.rp 1.0 MB/s | 2.1 MB 00:02 (66/153): forge-srpm-macros-0.1.0-1.fc40.noarch 30 kB/s | 18 kB 00:00 (67/153): fpc-srpm-macros-1.3-8.fc39.noarch.rpm 104 kB/s | 7.4 kB 00:00 (68/153): gawk-5.2.2-2.fc39.x86_64.rpm 14 MB/s | 1.1 MB 00:00 (69/153): gdbm-libs-1.23-4.fc39.x86_64.rpm 1.3 MB/s | 56 kB 00:00 (70/153): gdb-minimal-13.2-9.fc40.x86_64.rpm 29 MB/s | 4.2 MB 00:00 (71/153): ghc-srpm-macros-1.6.1-2.fc39.noarch.r 108 kB/s | 7.8 kB 00:00 (72/153): glibc-common-2.38.9000-9.fc40.x86_64. 15 MB/s | 356 kB 00:00 (73/153): glibc-2.38.9000-9.fc40.x86_64.rpm 28 MB/s | 2.2 MB 00:00 (74/153): glibc-gconv-extra-2.38.9000-9.fc40.x8 24 MB/s | 1.6 MB 00:00 (75/153): glibc-minimal-langpack-2.38.9000-9.fc 5.0 MB/s | 74 kB 00:00 (76/153): gnat-srpm-macros-6-3.fc39.noarch.rpm 996 kB/s | 8.8 kB 00:00 (77/153): gmp-6.2.1-5.fc39.x86_64.rpm 17 MB/s | 313 kB 00:00 (78/153): go-srpm-macros-3.2.0-7.fc40.noarch.rp 2.9 MB/s | 27 kB 00:00 (79/153): gzip-1.12-6.fc39.x86_64.rpm 10 MB/s | 166 kB 00:00 (80/153): grep-3.11-5.fc40.x86_64.rpm 13 MB/s | 298 kB 00:00 (81/153): info-7.0.3-3.fc39.x86_64.rpm 11 MB/s | 182 kB 00:00 (82/153): jansson-2.13.1-7.fc39.x86_64.rpm 3.5 MB/s | 44 kB 00:00 (83/153): keyutils-libs-1.6.1-7.fc39.x86_64.rpm 2.4 MB/s | 31 kB 00:00 (84/153): kernel-srpm-macros-1.0-20.fc39.noarch 571 kB/s | 10 kB 00:00 (85/153): libacl-2.3.1-9.fc40.x86_64.rpm 2.1 MB/s | 23 kB 00:00 (86/153): krb5-libs-1.21.2-1.fc40.x86_64.rpm 23 MB/s | 765 kB 00:00 (87/153): libattr-2.5.1-9.fc40.x86_64.rpm 986 kB/s | 18 kB 00:00 (88/153): libcap-2.48-7.fc39.x86_64.rpm 4.3 MB/s | 68 kB 00:00 (89/153): libbrotli-1.1.0-1.fc40.x86_64.rpm 13 MB/s | 336 kB 00:00 (90/153): libcap-ng-0.8.3-8.fc40.x86_64.rpm 2.2 MB/s | 32 kB 00:00 (91/153): libcom_err-1.47.0-2.fc39.x86_64.rpm 2.7 MB/s | 26 kB 00:00 (92/153): libevent-2.1.12-9.fc39.x86_64.rpm 11 MB/s | 258 kB 00:00 (93/153): libeconf-0.5.2-1.fc40.x86_64.rpm 789 kB/s | 30 kB 00:00 (94/153): libffi-3.4.4-4.fc39.x86_64.rpm 3.0 MB/s | 40 kB 00:00 (95/153): libidn2-2.3.4-3.fc39.x86_64.rpm 8.8 MB/s | 117 kB 00:00 (96/153): libnsl2-2.0.0-6.fc39.x86_64.rpm 2.6 MB/s | 30 kB 00:00 (97/153): libpkgconf-1.9.5-2.fc39.x86_64.rpm 3.5 MB/s | 38 kB 00:00 (98/153): libpwquality-1.4.5-6.fc39.x86_64.rpm 9.4 MB/s | 120 kB 00:00 (99/153): libselinux-3.5-5.fc39.x86_64.rpm 7.2 MB/s | 87 kB 00:00 (100/153): libpsl-0.21.2-4.fc39.x86_64.rpm 1.5 MB/s | 63 kB 00:00 (101/153): libsepol-3.5-2.fc39.x86_64.rpm 19 MB/s | 324 kB 00:00 (102/153): libsigsegv-2.14-5.fc39.x86_64.rpm 1.1 MB/s | 27 kB 00:00 (103/153): libtasn1-4.19.0-3.fc39.x86_64.rpm 6.3 MB/s | 74 kB 00:00 (104/153): libtirpc-1.3.3-1.rc2.fc39.x86_64.rpm 7.6 MB/s | 94 kB 00:00 (105/153): libunistring-1.1-5.fc40.x86_64.rpm 28 MB/s | 543 kB 00:00 (106/153): libsemanage-3.5-4.fc39.x86_64.rpm 1.3 MB/s | 120 kB 00:00 (107/153): libutempter-1.2.1-10.fc39.x86_64.rpm 2.8 MB/s | 26 kB 00:00 (108/153): libxcrypt-4.4.36-2.fc39.x86_64.rpm 10 MB/s | 119 kB 00:00 (109/153): libverto-0.3.2-6.fc39.x86_64.rpm 720 kB/s | 20 kB 00:00 (110/153): lua-libs-5.4.6-3.fc39.x86_64.rpm 9.5 MB/s | 133 kB 00:00 (111/153): lua-srpm-macros-1-9.fc39.noarch.rpm 965 kB/s | 8.6 kB 00:00 (112/153): lz4-libs-1.9.4-4.fc39.x86_64.rpm 6.1 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pkgconf-1.9.5-2.fc39.x86_64.rpm 4.2 MB/s | 42 kB 00:00 (128/153): pkgconf-m4-1.9.5-2.fc39.noarch.rpm 1.4 MB/s | 14 kB 00:00 (129/153): pkgconf-pkg-config-1.9.5-2.fc39.x86_ 781 kB/s | 9.6 kB 00:00 (130/153): popt-1.19-3.fc39.x86_64.rpm 5.1 MB/s | 66 kB 00:00 (131/153): publicsuffix-list-dafsa-20230812-1.f 4.0 MB/s | 57 kB 00:00 (132/153): pyproject-srpm-macros-1.9.0-2.fc39.n 1.0 MB/s | 14 kB 00:00 (133/153): python-srpm-macros-3.12-4.fc40.noarc 1.3 MB/s | 25 kB 00:00 (134/153): qt5-srpm-macros-5.15.10-2.fc39.noarc 170 kB/s | 8.3 kB 00:00 (135/153): pcre2-syntax-10.42-1.fc39.2.noarch.r 716 kB/s | 143 kB 00:00 (136/153): qt6-srpm-macros-6.5.2-2.fc39.noarch. 256 kB/s | 9.2 kB 00:00 (137/153): readline-8.2-4.fc39.x86_64.rpm 1.3 MB/s | 213 kB 00:00 (138/153): rust-srpm-macros-24-5.fc40.noarch.rp 735 kB/s | 12 kB 00:00 (139/153): sed-4.8-14.fc39.x86_64.rpm 1.6 MB/s | 306 kB 00:00 (140/153): setup-2.14.4-1.fc39.noarch.rpm 11 MB/s | 154 kB 00:00 (141/153): rpm-sequoia-1.5.0-1.fc40.x86_64.rpm 1.5 MB/s | 883 kB 00:00 (142/153): binutils-2.41-5.fc40.x86_64.rpm 1.6 MB/s | 6.3 MB 00:03 (143/153): systemd-libs-254.2-7.fc40.x86_64.rpm 10 MB/s | 688 kB 00:00 (144/153): tar-1.35-2.fc40.x86_64.rpm 9.5 MB/s | 864 kB 00:00 (145/153): tzdata-2023c-3.fc40.noarch.rpm 7.9 MB/s | 718 kB 00:00 (146/153): unzip-6.0-62.fc39.x86_64.rpm 3.6 MB/s | 184 kB 00:00 (147/153): which-2.21-40.fc39.x86_64.rpm 2.0 MB/s | 42 kB 00:00 (148/153): xxhash-libs-0.8.2-1.fc39.x86_64.rpm 1.9 MB/s | 37 kB 00:00 (149/153): xz-5.4.4-1.fc39.x86_64.rpm 10 MB/s | 556 kB 00:00 (150/153): sqlite-libs-3.43.1-1.fc40.x86_64.rpm 1.4 MB/s | 688 kB 00:00 (151/153): xz-libs-5.4.4-1.fc39.x86_64.rpm 2.3 MB/s | 108 kB 00:00 (152/153): zip-3.0-39.fc40.x86_64.rpm 7.4 MB/s | 266 kB 00:00 (153/153): shadow-utils-4.14.0-1.fc40.x86_64.rp 1.5 MB/s | 1.3 MB 00:00 -------------------------------------------------------------------------------- Total 11 MB/s | 53 MB 00:05 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xA15B79CC: Userid : "Fedora (40) " Fingerprint: 115D F9AE F857 853E E844 5D0A 0727 707E A15B 79CC From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-40-primary (0xA15B79CC) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x18B8E74C: Userid : "Fedora (39) " Fingerprint: E8F2 3996 F232 1864 0CB4 4CBE 75CF 5AC4 18B8 E74C From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-39-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-6.fc39.x86_64 1/1 Preparing : 1/1 Installing : libgcc-13.2.1-1.fc40.x86_64 1/153 Running scriptlet: libgcc-13.2.1-1.fc40.x86_64 1/153 Installing : crypto-policies-20230731-1.git5ed06e0.fc39.noarc 2/153 Running scriptlet: crypto-policies-20230731-1.git5ed06e0.fc39.noarc 2/153 Installing : tzdata-2023c-3.fc40.noarch 3/153 Installing : fedora-release-identity-basic-40-0.7.noarch 4/153 Installing : fedora-repos-rawhide-40-0.1.noarch 5/153 Installing : fedora-gpg-keys-40-0.1.noarch 6/153 Installing : fedora-repos-40-0.1.noarch 7/153 Installing : fedora-release-common-40-0.7.noarch 8/153 Installing : fedora-release-40-0.7.noarch 9/153 Installing : setup-2.14.4-1.fc39.noarch 10/153 warning: /etc/hosts created as /etc/hosts.rpmnew Running scriptlet: setup-2.14.4-1.fc39.noarch 10/153 Installing : filesystem-3.18-6.fc39.x86_64 11/153 Installing : basesystem-11-18.fc39.noarch 12/153 Installing : rust-srpm-macros-24-5.fc40.noarch 13/153 Installing : qt6-srpm-macros-6.5.2-2.fc39.noarch 14/153 Installing : qt5-srpm-macros-5.15.10-2.fc39.noarch 15/153 Installing : pyproject-srpm-macros-1.9.0-2.fc39.noarch 16/153 Installing : publicsuffix-list-dafsa-20230812-1.fc40.noarch 17/153 Installing : pkgconf-m4-1.9.5-2.fc39.noarch 18/153 Installing : perl-srpm-macros-1-51.fc39.noarch 19/153 Installing : pcre2-syntax-10.42-1.fc39.2.noarch 20/153 Installing : package-notes-srpm-macros-0.5-9.fc39.noarch 21/153 Installing : openblas-srpm-macros-2-14.fc39.noarch 22/153 Installing : ocaml-srpm-macros-8-2.fc39.noarch 23/153 Installing : ncurses-base-6.4-7.20230520.fc40.noarch 24/153 Installing : glibc-gconv-extra-2.38.9000-9.fc40.x86_64 25/153 Running scriptlet: glibc-gconv-extra-2.38.9000-9.fc40.x86_64 25/153 Installing : glibc-minimal-langpack-2.38.9000-9.fc40.x86_64 26/153 Installing : glibc-common-2.38.9000-9.fc40.x86_64 27/153 Running scriptlet: glibc-2.38.9000-9.fc40.x86_64 28/153 Installing : glibc-2.38.9000-9.fc40.x86_64 28/153 Running scriptlet: glibc-2.38.9000-9.fc40.x86_64 28/153 Installing : ncurses-libs-6.4-7.20230520.fc40.x86_64 29/153 Installing : bash-5.2.15-5.fc39.x86_64 30/153 Running scriptlet: bash-5.2.15-5.fc39.x86_64 30/153 Installing : zlib-ng-compat-2.1.3-4.fc40.x86_64 31/153 Installing : xz-libs-5.4.4-1.fc39.x86_64 32/153 Installing : bzip2-libs-1.0.8-16.fc39.x86_64 33/153 Installing : libstdc++-13.2.1-1.fc40.x86_64 34/153 Installing : libuuid-2.39.2-1.fc40.x86_64 35/153 Installing : libzstd-1.5.5-4.fc40.x86_64 36/153 Installing : elfutils-libelf-0.189-6.fc40.x86_64 37/153 Installing : popt-1.19-3.fc39.x86_64 38/153 Installing : libblkid-2.39.2-1.fc40.x86_64 39/153 Installing : readline-8.2-4.fc39.x86_64 40/153 Installing : gmp-1:6.2.1-5.fc39.x86_64 41/153 Installing : libattr-2.5.1-9.fc40.x86_64 42/153 Installing : libacl-2.3.1-9.fc40.x86_64 43/153 Installing : libcap-2.48-7.fc39.x86_64 44/153 Installing : libxcrypt-4.4.36-2.fc39.x86_64 45/153 Installing : lz4-libs-1.9.4-4.fc39.x86_64 46/153 Installing : systemd-libs-254.2-7.fc40.x86_64 47/153 Installing : mpfr-4.2.0-3.fc39.x86_64 48/153 Installing : dwz-0.15-3.fc39.x86_64 49/153 Installing : unzip-6.0-62.fc39.x86_64 50/153 Installing : file-libs-5.45-1.fc40.x86_64 51/153 Installing : file-5.45-1.fc40.x86_64 52/153 Installing : libsmartcols-2.39.2-1.fc40.x86_64 53/153 Installing : alternatives-1.25-1.fc39.x86_64 54/153 Installing : jansson-2.13.1-7.fc39.x86_64 55/153 Installing : libcap-ng-0.8.3-8.fc40.x86_64 56/153 Installing : audit-libs-3.1.2-4.fc40.x86_64 57/153 Installing : pam-libs-1.5.3-2.fc39.x86_64 58/153 Installing : libcom_err-1.47.0-2.fc39.x86_64 59/153 Installing : libsepol-3.5-2.fc39.x86_64 60/153 Installing : libunistring-1.1-5.fc40.x86_64 61/153 Installing : libidn2-2.3.4-3.fc39.x86_64 62/153 Installing : lua-libs-5.4.6-3.fc39.x86_64 63/153 Installing : pcre2-10.42-1.fc39.2.x86_64 64/153 Installing : libselinux-3.5-5.fc39.x86_64 65/153 Installing : sed-4.8-14.fc39.x86_64 66/153 Installing : grep-3.11-5.fc40.x86_64 67/153 Installing : findutils-1:4.9.0-6.fc40.x86_64 68/153 Installing : xz-5.4.4-1.fc39.x86_64 69/153 Installing : libmount-2.39.2-1.fc40.x86_64 70/153 Installing : util-linux-core-2.39.2-1.fc40.x86_64 71/153 Installing : libsemanage-3.5-4.fc39.x86_64 72/153 Installing : tar-2:1.35-2.fc40.x86_64 73/153 Installing : libpsl-0.21.2-4.fc39.x86_64 74/153 Installing : zip-3.0-39.fc40.x86_64 75/153 Installing : zstd-1.5.5-4.fc40.x86_64 76/153 Installing : libfdisk-2.39.2-1.fc40.x86_64 77/153 Installing : bzip2-1.0.8-16.fc39.x86_64 78/153 Installing : libxml2-2.11.5-1.fc40.x86_64 79/153 Installing : sqlite-libs-3.43.1-1.fc40.x86_64 80/153 Installing : elfutils-default-yama-scope-0.189-6.fc40.noarch 81/153 Running scriptlet: elfutils-default-yama-scope-0.189-6.fc40.noarch 81/153 Installing : ed-1.19-4.fc39.x86_64 82/153 Installing : patch-2.7.6-22.fc39.x86_64 83/153 Installing : libdb-5.3.28-58.fc40.x86_64 84/153 Installing : libgomp-13.2.1-1.fc40.x86_64 85/153 Installing : libnghttp2-1.56.0-1.fc40.x86_64 86/153 Installing : cpio-2.14-4.fc39.x86_64 87/153 Installing : diffutils-3.10-3.fc39.x86_64 88/153 Installing : gdbm-libs-1:1.23-4.fc39.x86_64 89/153 Installing : cyrus-sasl-lib-2.1.28-11.fc40.x86_64 90/153 Installing : keyutils-libs-1.6.1-7.fc39.x86_64 91/153 Installing : libbrotli-1.1.0-1.fc40.x86_64 92/153 Installing : libeconf-0.5.2-1.fc40.x86_64 93/153 Installing : shadow-utils-2:4.14.0-1.fc40.x86_64 94/153 Running scriptlet: libutempter-1.2.1-10.fc39.x86_64 95/153 Installing : libutempter-1.2.1-10.fc39.x86_64 95/153 Installing : libffi-3.4.4-4.fc39.x86_64 96/153 Installing : p11-kit-0.25.0-2.fc39.x86_64 97/153 Installing : libpkgconf-1.9.5-2.fc39.x86_64 98/153 Installing : pkgconf-1.9.5-2.fc39.x86_64 99/153 Installing : pkgconf-pkg-config-1.9.5-2.fc39.x86_64 100/153 Installing : libsigsegv-2.14-5.fc39.x86_64 101/153 Installing : gawk-5.2.2-2.fc39.x86_64 102/153 Installing : libtasn1-4.19.0-3.fc39.x86_64 103/153 Installing : p11-kit-trust-0.25.0-2.fc39.x86_64 104/153 Running scriptlet: p11-kit-trust-0.25.0-2.fc39.x86_64 104/153 Installing : libverto-0.3.2-6.fc39.x86_64 105/153 Installing : xxhash-libs-0.8.2-1.fc39.x86_64 106/153 Installing : kernel-srpm-macros-1.0-20.fc39.noarch 107/153 Installing : gnat-srpm-macros-6-3.fc39.noarch 108/153 Installing : ghc-srpm-macros-1.6.1-2.fc39.noarch 109/153 Installing : fpc-srpm-macros-1.3-8.fc39.noarch 110/153 Installing : coreutils-common-9.4-1.fc40.x86_64 111/153 Installing : openssl-libs-1:3.1.1-4.fc40.x86_64 112/153 Installing : coreutils-9.4-1.fc40.x86_64 113/153 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 114/153 Installing : ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 114/153 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 114/153 Installing : krb5-libs-1.21.2-1.fc40.x86_64 115/153 Installing : libtirpc-1.3.3-1.rc2.fc39.x86_64 116/153 Running scriptlet: authselect-libs-1.4.2-3.fc39.x86_64 117/153 Installing : authselect-libs-1.4.2-3.fc39.x86_64 117/153 Installing : gzip-1.12-6.fc39.x86_64 118/153 Installing : cracklib-2.9.11-2.fc40.x86_64 119/153 Installing : libpwquality-1.4.5-6.fc39.x86_64 120/153 Installing : authselect-1.4.2-3.fc39.x86_64 121/153 Installing : libnsl2-2.0.0-6.fc39.x86_64 122/153 Installing : pam-1.5.3-2.fc39.x86_64 123/153 Installing : libarchive-3.7.2-1.fc40.x86_64 124/153 Installing : libevent-2.1.12-9.fc39.x86_64 125/153 Installing : openldap-2.6.6-1.fc39.x86_64 126/153 Installing : rpm-sequoia-1.5.0-1.fc40.x86_64 127/153 Installing : rpm-libs-4.18.99-1.fc40.x86_64 128/153 Installing : ansible-srpm-macros-1-11.fc39.noarch 129/153 Installing : libssh-config-0.10.5-2.fc40.noarch 130/153 Installing : libssh-0.10.5-2.fc40.x86_64 131/153 Installing : libcurl-8.3.0-1.fc40.x86_64 132/153 Installing : elfutils-libs-0.189-6.fc40.x86_64 133/153 Installing : elfutils-debuginfod-client-0.189-6.fc40.x86_64 134/153 Installing : binutils-gold-2.41-5.fc40.x86_64 135/153 Running 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util-linux-2.39.2-1.fc40.x86_64 151/153 Installing : which-2.21-40.fc39.x86_64 152/153 Installing : info-7.0.3-3.fc39.x86_64 153/153 Running scriptlet: filesystem-3.18-6.fc39.x86_64 153/153 Running scriptlet: ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 153/153 Running scriptlet: authselect-libs-1.4.2-3.fc39.x86_64 153/153 Running scriptlet: rpm-4.18.99-1.fc40.x86_64 153/153 Running scriptlet: info-7.0.3-3.fc39.x86_64 153/153 Verifying : cracklib-2.9.11-2.fc40.x86_64 1/153 Verifying : curl-8.3.0-1.fc40.x86_64 2/153 Verifying : cyrus-sasl-lib-2.1.28-11.fc40.x86_64 3/153 Verifying : elfutils-0.189-6.fc40.x86_64 4/153 Verifying : elfutils-debuginfod-client-0.189-6.fc40.x86_64 5/153 Verifying : elfutils-default-yama-scope-0.189-6.fc40.noarch 6/153 Verifying : elfutils-libelf-0.189-6.fc40.x86_64 7/153 Verifying : elfutils-libs-0.189-6.fc40.x86_64 8/153 Verifying : file-5.45-1.fc40.x86_64 9/153 Verifying : file-libs-5.45-1.fc40.x86_64 10/153 Verifying : libarchive-3.7.2-1.fc40.x86_64 11/153 Verifying : libblkid-2.39.2-1.fc40.x86_64 12/153 Verifying : libcurl-8.3.0-1.fc40.x86_64 13/153 Verifying : libdb-5.3.28-58.fc40.x86_64 14/153 Verifying : libfdisk-2.39.2-1.fc40.x86_64 15/153 Verifying : libgcc-13.2.1-1.fc40.x86_64 16/153 Verifying : libgomp-13.2.1-1.fc40.x86_64 17/153 Verifying : libmount-2.39.2-1.fc40.x86_64 18/153 Verifying : libnghttp2-1.56.0-1.fc40.x86_64 19/153 Verifying : libsmartcols-2.39.2-1.fc40.x86_64 20/153 Verifying : libssh-0.10.5-2.fc40.x86_64 21/153 Verifying : libssh-config-0.10.5-2.fc40.noarch 22/153 Verifying : libstdc++-13.2.1-1.fc40.x86_64 23/153 Verifying : libuuid-2.39.2-1.fc40.x86_64 24/153 Verifying : libxml2-2.11.5-1.fc40.x86_64 25/153 Verifying : libzstd-1.5.5-4.fc40.x86_64 26/153 Verifying : openssl-libs-1:3.1.1-4.fc40.x86_64 27/153 Verifying : redhat-rpm-config-270-1.fc40.noarch 28/153 Verifying : rpm-4.18.99-1.fc40.x86_64 29/153 Verifying : rpm-build-4.18.99-1.fc40.x86_64 30/153 Verifying : rpm-build-libs-4.18.99-1.fc40.x86_64 31/153 Verifying : rpm-libs-4.18.99-1.fc40.x86_64 32/153 Verifying : util-linux-2.39.2-1.fc40.x86_64 33/153 Verifying : util-linux-core-2.39.2-1.fc40.x86_64 34/153 Verifying : zlib-ng-compat-2.1.3-4.fc40.x86_64 35/153 Verifying : zstd-1.5.5-4.fc40.x86_64 36/153 Verifying : alternatives-1.25-1.fc39.x86_64 37/153 Verifying : ansible-srpm-macros-1-11.fc39.noarch 38/153 Verifying : audit-libs-3.1.2-4.fc40.x86_64 39/153 Verifying : authselect-1.4.2-3.fc39.x86_64 40/153 Verifying : authselect-libs-1.4.2-3.fc39.x86_64 41/153 Verifying : basesystem-11-18.fc39.noarch 42/153 Verifying : bash-5.2.15-5.fc39.x86_64 43/153 Verifying : binutils-2.41-5.fc40.x86_64 44/153 Verifying : binutils-gold-2.41-5.fc40.x86_64 45/153 Verifying : bzip2-1.0.8-16.fc39.x86_64 46/153 Verifying : bzip2-libs-1.0.8-16.fc39.x86_64 47/153 Verifying : ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch 48/153 Verifying : coreutils-9.4-1.fc40.x86_64 49/153 Verifying : coreutils-common-9.4-1.fc40.x86_64 50/153 Verifying : cpio-2.14-4.fc39.x86_64 51/153 Verifying : crypto-policies-20230731-1.git5ed06e0.fc39.noarc 52/153 Verifying : debugedit-5.0-10.fc39.x86_64 53/153 Verifying : diffutils-3.10-3.fc39.x86_64 54/153 Verifying : dwz-0.15-3.fc39.x86_64 55/153 Verifying : ed-1.19-4.fc39.x86_64 56/153 Verifying : efi-srpm-macros-5-9.fc39.noarch 57/153 Verifying : fedora-gpg-keys-40-0.1.noarch 58/153 Verifying : fedora-release-40-0.7.noarch 59/153 Verifying : fedora-release-common-40-0.7.noarch 60/153 Verifying : fedora-release-identity-basic-40-0.7.noarch 61/153 Verifying : fedora-repos-40-0.1.noarch 62/153 Verifying : fedora-repos-rawhide-40-0.1.noarch 63/153 Verifying : filesystem-3.18-6.fc39.x86_64 64/153 Verifying : findutils-1:4.9.0-6.fc40.x86_64 65/153 Verifying : fonts-srpm-macros-1:2.0.5-12.fc39.noarch 66/153 Verifying : forge-srpm-macros-0.1.0-1.fc40.noarch 67/153 Verifying : fpc-srpm-macros-1.3-8.fc39.noarch 68/153 Verifying : gawk-5.2.2-2.fc39.x86_64 69/153 Verifying : gdb-minimal-13.2-9.fc40.x86_64 70/153 Verifying : gdbm-libs-1:1.23-4.fc39.x86_64 71/153 Verifying : ghc-srpm-macros-1.6.1-2.fc39.noarch 72/153 Verifying : glibc-2.38.9000-9.fc40.x86_64 73/153 Verifying : glibc-common-2.38.9000-9.fc40.x86_64 74/153 Verifying : glibc-gconv-extra-2.38.9000-9.fc40.x86_64 75/153 Verifying : glibc-minimal-langpack-2.38.9000-9.fc40.x86_64 76/153 Verifying : gmp-1:6.2.1-5.fc39.x86_64 77/153 Verifying : gnat-srpm-macros-6-3.fc39.noarch 78/153 Verifying : go-srpm-macros-3.2.0-7.fc40.noarch 79/153 Verifying : grep-3.11-5.fc40.x86_64 80/153 Verifying : gzip-1.12-6.fc39.x86_64 81/153 Verifying : info-7.0.3-3.fc39.x86_64 82/153 Verifying : jansson-2.13.1-7.fc39.x86_64 83/153 Verifying : kernel-srpm-macros-1.0-20.fc39.noarch 84/153 Verifying : keyutils-libs-1.6.1-7.fc39.x86_64 85/153 Verifying : krb5-libs-1.21.2-1.fc40.x86_64 86/153 Verifying : libacl-2.3.1-9.fc40.x86_64 87/153 Verifying : libattr-2.5.1-9.fc40.x86_64 88/153 Verifying : libbrotli-1.1.0-1.fc40.x86_64 89/153 Verifying : libcap-2.48-7.fc39.x86_64 90/153 Verifying : libcap-ng-0.8.3-8.fc40.x86_64 91/153 Verifying : libcom_err-1.47.0-2.fc39.x86_64 92/153 Verifying : libeconf-0.5.2-1.fc40.x86_64 93/153 Verifying : libevent-2.1.12-9.fc39.x86_64 94/153 Verifying : libffi-3.4.4-4.fc39.x86_64 95/153 Verifying : libidn2-2.3.4-3.fc39.x86_64 96/153 Verifying : libnsl2-2.0.0-6.fc39.x86_64 97/153 Verifying : libpkgconf-1.9.5-2.fc39.x86_64 98/153 Verifying : libpsl-0.21.2-4.fc39.x86_64 99/153 Verifying : libpwquality-1.4.5-6.fc39.x86_64 100/153 Verifying : libselinux-3.5-5.fc39.x86_64 101/153 Verifying : libsemanage-3.5-4.fc39.x86_64 102/153 Verifying : libsepol-3.5-2.fc39.x86_64 103/153 Verifying : libsigsegv-2.14-5.fc39.x86_64 104/153 Verifying : libtasn1-4.19.0-3.fc39.x86_64 105/153 Verifying : libtirpc-1.3.3-1.rc2.fc39.x86_64 106/153 Verifying : libunistring-1.1-5.fc40.x86_64 107/153 Verifying : libutempter-1.2.1-10.fc39.x86_64 108/153 Verifying : libverto-0.3.2-6.fc39.x86_64 109/153 Verifying : libxcrypt-4.4.36-2.fc39.x86_64 110/153 Verifying : lua-libs-5.4.6-3.fc39.x86_64 111/153 Verifying : lua-srpm-macros-1-9.fc39.noarch 112/153 Verifying : lz4-libs-1.9.4-4.fc39.x86_64 113/153 Verifying : mpfr-4.2.0-3.fc39.x86_64 114/153 Verifying : ncurses-base-6.4-7.20230520.fc40.noarch 115/153 Verifying : ncurses-libs-6.4-7.20230520.fc40.x86_64 116/153 Verifying : ocaml-srpm-macros-8-2.fc39.noarch 117/153 Verifying : openblas-srpm-macros-2-14.fc39.noarch 118/153 Verifying : openldap-2.6.6-1.fc39.x86_64 119/153 Verifying : p11-kit-0.25.0-2.fc39.x86_64 120/153 Verifying : p11-kit-trust-0.25.0-2.fc39.x86_64 121/153 Verifying : package-notes-srpm-macros-0.5-9.fc39.noarch 122/153 Verifying : pam-1.5.3-2.fc39.x86_64 123/153 Verifying : pam-libs-1.5.3-2.fc39.x86_64 124/153 Verifying : patch-2.7.6-22.fc39.x86_64 125/153 Verifying : pcre2-10.42-1.fc39.2.x86_64 126/153 Verifying : pcre2-syntax-10.42-1.fc39.2.noarch 127/153 Verifying : perl-srpm-macros-1-51.fc39.noarch 128/153 Verifying : pkgconf-1.9.5-2.fc39.x86_64 129/153 Verifying : pkgconf-m4-1.9.5-2.fc39.noarch 130/153 Verifying : pkgconf-pkg-config-1.9.5-2.fc39.x86_64 131/153 Verifying : popt-1.19-3.fc39.x86_64 132/153 Verifying : publicsuffix-list-dafsa-20230812-1.fc40.noarch 133/153 Verifying : pyproject-srpm-macros-1.9.0-2.fc39.noarch 134/153 Verifying : python-srpm-macros-3.12-4.fc40.noarch 135/153 Verifying : qt5-srpm-macros-5.15.10-2.fc39.noarch 136/153 Verifying : qt6-srpm-macros-6.5.2-2.fc39.noarch 137/153 Verifying : readline-8.2-4.fc39.x86_64 138/153 Verifying : rpm-sequoia-1.5.0-1.fc40.x86_64 139/153 Verifying : rust-srpm-macros-24-5.fc40.noarch 140/153 Verifying : sed-4.8-14.fc39.x86_64 141/153 Verifying : setup-2.14.4-1.fc39.noarch 142/153 Verifying : shadow-utils-2:4.14.0-1.fc40.x86_64 143/153 Verifying : sqlite-libs-3.43.1-1.fc40.x86_64 144/153 Verifying : systemd-libs-254.2-7.fc40.x86_64 145/153 Verifying : tar-2:1.35-2.fc40.x86_64 146/153 Verifying : tzdata-2023c-3.fc40.noarch 147/153 Verifying : unzip-6.0-62.fc39.x86_64 148/153 Verifying : which-2.21-40.fc39.x86_64 149/153 Verifying : xxhash-libs-0.8.2-1.fc39.x86_64 150/153 Verifying : xz-5.4.4-1.fc39.x86_64 151/153 Verifying : xz-libs-5.4.4-1.fc39.x86_64 152/153 Verifying : zip-3.0-39.fc40.x86_64 153/153 Installed: alternatives-1.25-1.fc39.x86_64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-4.fc40.x86_64 authselect-1.4.2-3.fc39.x86_64 authselect-libs-1.4.2-3.fc39.x86_64 basesystem-11-18.fc39.noarch bash-5.2.15-5.fc39.x86_64 binutils-2.41-5.fc40.x86_64 binutils-gold-2.41-5.fc40.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch coreutils-9.4-1.fc40.x86_64 coreutils-common-9.4-1.fc40.x86_64 cpio-2.14-4.fc39.x86_64 cracklib-2.9.11-2.fc40.x86_64 crypto-policies-20230731-1.git5ed06e0.fc39.noarch curl-8.3.0-1.fc40.x86_64 cyrus-sasl-lib-2.1.28-11.fc40.x86_64 debugedit-5.0-10.fc39.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.189-6.fc40.x86_64 elfutils-debuginfod-client-0.189-6.fc40.x86_64 elfutils-default-yama-scope-0.189-6.fc40.noarch elfutils-libelf-0.189-6.fc40.x86_64 elfutils-libs-0.189-6.fc40.x86_64 fedora-gpg-keys-40-0.1.noarch fedora-release-40-0.7.noarch fedora-release-common-40-0.7.noarch fedora-release-identity-basic-40-0.7.noarch fedora-repos-40-0.1.noarch fedora-repos-rawhide-40-0.1.noarch file-5.45-1.fc40.x86_64 file-libs-5.45-1.fc40.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-1:4.9.0-6.fc40.x86_64 fonts-srpm-macros-1:2.0.5-12.fc39.noarch forge-srpm-macros-0.1.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-13.2-9.fc40.x86_64 gdbm-libs-1:1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38.9000-9.fc40.x86_64 glibc-common-2.38.9000-9.fc40.x86_64 glibc-gconv-extra-2.38.9000-9.fc40.x86_64 glibc-minimal-langpack-2.38.9000-9.fc40.x86_64 gmp-1:6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.2.0-7.fc40.noarch grep-3.11-5.fc40.x86_64 gzip-1.12-6.fc39.x86_64 info-7.0.3-3.fc39.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.x86_64 krb5-libs-1.21.2-1.fc40.x86_64 libacl-2.3.1-9.fc40.x86_64 libarchive-3.7.2-1.fc40.x86_64 libattr-2.5.1-9.fc40.x86_64 libblkid-2.39.2-1.fc40.x86_64 libbrotli-1.1.0-1.fc40.x86_64 libcap-2.48-7.fc39.x86_64 libcap-ng-0.8.3-8.fc40.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.3.0-1.fc40.x86_64 libdb-5.3.28-58.fc40.x86_64 libeconf-0.5.2-1.fc40.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.2-1.fc40.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.2.1-1.fc40.x86_64 libgomp-13.2.1-1.fc40.x86_64 libidn2-2.3.4-3.fc39.x86_64 libmount-2.39.2-1.fc40.x86_64 libnghttp2-1.56.0-1.fc40.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.5-5.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libsepol-3.5-2.fc39.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.2-1.fc40.x86_64 libssh-0.10.5-2.fc40.x86_64 libssh-config-0.10.5-2.fc40.noarch libstdc++-13.2.1-1.fc40.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.3-1.rc2.fc39.x86_64 libunistring-1.1-5.fc40.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.2-1.fc40.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.11.5-1.fc40.x86_64 libzstd-1.5.5-4.fc40.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.0-3.fc39.x86_64 ncurses-base-6.4-7.20230520.fc40.noarch ncurses-libs-6.4-7.20230520.fc40.x86_64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-1:3.1.1-4.fc40.x86_64 p11-kit-0.25.0-2.fc39.x86_64 p11-kit-trust-0.25.0-2.fc39.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-2.fc39.x86_64 pam-libs-1.5.3-2.fc39.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-1.fc39.2.x86_64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.9.0-2.fc39.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.10-2.fc39.noarch qt6-srpm-macros-6.5.2-2.fc39.noarch readline-8.2-4.fc39.x86_64 redhat-rpm-config-270-1.fc40.noarch rpm-4.18.99-1.fc40.x86_64 rpm-build-4.18.99-1.fc40.x86_64 rpm-build-libs-4.18.99-1.fc40.x86_64 rpm-libs-4.18.99-1.fc40.x86_64 rpm-sequoia-1.5.0-1.fc40.x86_64 rust-srpm-macros-24-5.fc40.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-2:4.14.0-1.fc40.x86_64 sqlite-libs-3.43.1-1.fc40.x86_64 systemd-libs-254.2-7.fc40.x86_64 tar-2:1.35-2.fc40.x86_64 tzdata-2023c-3.fc40.noarch unzip-6.0-62.fc39.x86_64 util-linux-2.39.2-1.fc40.x86_64 util-linux-core-2.39.2-1.fc40.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.4-1.fc39.x86_64 xz-libs-5.4.4-1.fc39.x86_64 zip-3.0-39.fc40.x86_64 zlib-ng-compat-2.1.3-4.fc40.x86_64 zstd-1.5.5-4.fc40.x86_64 Complete! Finish: installing minimal buildroot with dnf Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: alternatives-1.25-1.fc39.x86_64 ansible-srpm-macros-1-11.fc39.noarch audit-libs-3.1.2-4.fc40.x86_64 authselect-1.4.2-3.fc39.x86_64 authselect-libs-1.4.2-3.fc39.x86_64 basesystem-11-18.fc39.noarch bash-5.2.15-5.fc39.x86_64 binutils-2.41-5.fc40.x86_64 binutils-gold-2.41-5.fc40.x86_64 bzip2-1.0.8-16.fc39.x86_64 bzip2-libs-1.0.8-16.fc39.x86_64 ca-certificates-2023.2.60_v7.0.306-3.fc40.noarch coreutils-9.4-1.fc40.x86_64 coreutils-common-9.4-1.fc40.x86_64 cpio-2.14-4.fc39.x86_64 cracklib-2.9.11-2.fc40.x86_64 crypto-policies-20230731-1.git5ed06e0.fc39.noarch curl-8.3.0-1.fc40.x86_64 cyrus-sasl-lib-2.1.28-11.fc40.x86_64 debugedit-5.0-10.fc39.x86_64 diffutils-3.10-3.fc39.x86_64 dwz-0.15-3.fc39.x86_64 ed-1.19-4.fc39.x86_64 efi-srpm-macros-5-9.fc39.noarch elfutils-0.189-6.fc40.x86_64 elfutils-debuginfod-client-0.189-6.fc40.x86_64 elfutils-default-yama-scope-0.189-6.fc40.noarch elfutils-libelf-0.189-6.fc40.x86_64 elfutils-libs-0.189-6.fc40.x86_64 fedora-gpg-keys-40-0.1.noarch fedora-release-40-0.7.noarch fedora-release-common-40-0.7.noarch fedora-release-identity-basic-40-0.7.noarch fedora-repos-40-0.1.noarch fedora-repos-rawhide-40-0.1.noarch file-5.45-1.fc40.x86_64 file-libs-5.45-1.fc40.x86_64 filesystem-3.18-6.fc39.x86_64 findutils-4.9.0-6.fc40.x86_64 fonts-srpm-macros-2.0.5-12.fc39.noarch forge-srpm-macros-0.1.0-1.fc40.noarch fpc-srpm-macros-1.3-8.fc39.noarch gawk-5.2.2-2.fc39.x86_64 gdb-minimal-13.2-9.fc40.x86_64 gdbm-libs-1.23-4.fc39.x86_64 ghc-srpm-macros-1.6.1-2.fc39.noarch glibc-2.38.9000-9.fc40.x86_64 glibc-common-2.38.9000-9.fc40.x86_64 glibc-gconv-extra-2.38.9000-9.fc40.x86_64 glibc-minimal-langpack-2.38.9000-9.fc40.x86_64 gmp-6.2.1-5.fc39.x86_64 gnat-srpm-macros-6-3.fc39.noarch go-srpm-macros-3.2.0-7.fc40.noarch gpg-pubkey-18b8e74c-62f2920f gpg-pubkey-a15b79cc-63d04c2c grep-3.11-5.fc40.x86_64 gzip-1.12-6.fc39.x86_64 info-7.0.3-3.fc39.x86_64 jansson-2.13.1-7.fc39.x86_64 kernel-srpm-macros-1.0-20.fc39.noarch keyutils-libs-1.6.1-7.fc39.x86_64 krb5-libs-1.21.2-1.fc40.x86_64 libacl-2.3.1-9.fc40.x86_64 libarchive-3.7.2-1.fc40.x86_64 libattr-2.5.1-9.fc40.x86_64 libblkid-2.39.2-1.fc40.x86_64 libbrotli-1.1.0-1.fc40.x86_64 libcap-2.48-7.fc39.x86_64 libcap-ng-0.8.3-8.fc40.x86_64 libcom_err-1.47.0-2.fc39.x86_64 libcurl-8.3.0-1.fc40.x86_64 libdb-5.3.28-58.fc40.x86_64 libeconf-0.5.2-1.fc40.x86_64 libevent-2.1.12-9.fc39.x86_64 libfdisk-2.39.2-1.fc40.x86_64 libffi-3.4.4-4.fc39.x86_64 libgcc-13.2.1-1.fc40.x86_64 libgomp-13.2.1-1.fc40.x86_64 libidn2-2.3.4-3.fc39.x86_64 libmount-2.39.2-1.fc40.x86_64 libnghttp2-1.56.0-1.fc40.x86_64 libnsl2-2.0.0-6.fc39.x86_64 libpkgconf-1.9.5-2.fc39.x86_64 libpsl-0.21.2-4.fc39.x86_64 libpwquality-1.4.5-6.fc39.x86_64 libselinux-3.5-5.fc39.x86_64 libsemanage-3.5-4.fc39.x86_64 libsepol-3.5-2.fc39.x86_64 libsigsegv-2.14-5.fc39.x86_64 libsmartcols-2.39.2-1.fc40.x86_64 libssh-0.10.5-2.fc40.x86_64 libssh-config-0.10.5-2.fc40.noarch libstdc++-13.2.1-1.fc40.x86_64 libtasn1-4.19.0-3.fc39.x86_64 libtirpc-1.3.3-1.rc2.fc39.x86_64 libunistring-1.1-5.fc40.x86_64 libutempter-1.2.1-10.fc39.x86_64 libuuid-2.39.2-1.fc40.x86_64 libverto-0.3.2-6.fc39.x86_64 libxcrypt-4.4.36-2.fc39.x86_64 libxml2-2.11.5-1.fc40.x86_64 libzstd-1.5.5-4.fc40.x86_64 lua-libs-5.4.6-3.fc39.x86_64 lua-srpm-macros-1-9.fc39.noarch lz4-libs-1.9.4-4.fc39.x86_64 mpfr-4.2.0-3.fc39.x86_64 ncurses-base-6.4-7.20230520.fc40.noarch ncurses-libs-6.4-7.20230520.fc40.x86_64 ocaml-srpm-macros-8-2.fc39.noarch openblas-srpm-macros-2-14.fc39.noarch openldap-2.6.6-1.fc39.x86_64 openssl-libs-3.1.1-4.fc40.x86_64 p11-kit-0.25.0-2.fc39.x86_64 p11-kit-trust-0.25.0-2.fc39.x86_64 package-notes-srpm-macros-0.5-9.fc39.noarch pam-1.5.3-2.fc39.x86_64 pam-libs-1.5.3-2.fc39.x86_64 patch-2.7.6-22.fc39.x86_64 pcre2-10.42-1.fc39.2.x86_64 pcre2-syntax-10.42-1.fc39.2.noarch perl-srpm-macros-1-51.fc39.noarch pkgconf-1.9.5-2.fc39.x86_64 pkgconf-m4-1.9.5-2.fc39.noarch pkgconf-pkg-config-1.9.5-2.fc39.x86_64 popt-1.19-3.fc39.x86_64 publicsuffix-list-dafsa-20230812-1.fc40.noarch pyproject-srpm-macros-1.9.0-2.fc39.noarch python-srpm-macros-3.12-4.fc40.noarch qt5-srpm-macros-5.15.10-2.fc39.noarch qt6-srpm-macros-6.5.2-2.fc39.noarch readline-8.2-4.fc39.x86_64 redhat-rpm-config-270-1.fc40.noarch rpm-4.18.99-1.fc40.x86_64 rpm-build-4.18.99-1.fc40.x86_64 rpm-build-libs-4.18.99-1.fc40.x86_64 rpm-libs-4.18.99-1.fc40.x86_64 rpm-sequoia-1.5.0-1.fc40.x86_64 rust-srpm-macros-24-5.fc40.noarch sed-4.8-14.fc39.x86_64 setup-2.14.4-1.fc39.noarch shadow-utils-4.14.0-1.fc40.x86_64 sqlite-libs-3.43.1-1.fc40.x86_64 systemd-libs-254.2-7.fc40.x86_64 tar-1.35-2.fc40.x86_64 tzdata-2023c-3.fc40.noarch unzip-6.0-62.fc39.x86_64 util-linux-2.39.2-1.fc40.x86_64 util-linux-core-2.39.2-1.fc40.x86_64 which-2.21-40.fc39.x86_64 xxhash-libs-0.8.2-1.fc39.x86_64 xz-5.4.4-1.fc39.x86_64 xz-libs-5.4.4-1.fc39.x86_64 zip-3.0-39.fc40.x86_64 zlib-ng-compat-2.1.3-4.fc40.x86_64 zstd-1.5.5-4.fc40.x86_64 Start: buildsrpm Start: rpmbuild -bs warning: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N) Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1689724800 Wrote: /builddir/build/SRPMS/R-Rhtslib-1.28.0-4.fc40.src.rpm RPM build warnings: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N) Finish: rpmbuild -bs INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1695197193.315340/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1695197193.315340/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1695197193.315340/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-s8l8vkw2/R-Rhtslib/R-Rhtslib.spec) Config(child) 2 minutes 51 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-Rhtslib-1.28.0-4.fc40.src.rpm) Config(fedora-rawhide-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1695197193.315340/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1695197193.315340/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1695197193.315340/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Finish: chroot init INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.18.99-1.fc40.x86_64 rpm-sequoia-1.5.0-1.fc40.x86_64 python3-dnf-4.16.2-4.fc40.noarch python3-dnf-plugins-core-4.4.2-1.fc39.noarch yum-4.16.2-4.fc40.noarch Start: build phase for R-Rhtslib-1.28.0-4.fc40.src.rpm Start: build setup for R-Rhtslib-1.28.0-4.fc40.src.rpm warning: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N) Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1689724800 Wrote: /builddir/build/SRPMS/R-Rhtslib-1.28.0-4.fc40.src.rpm RPM build warnings: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N) No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 26 kB/s | 1.5 kB 00:00 fedora 630 kB/s | 20 kB 00:00 Dependencies resolved. ======================================================================================== Package Arch Version Repo Size ======================================================================================== Installing: R-devel x86_64 4.3.1-3.fc40 copr_base 11 k bzip2-devel x86_64 1.0.8-16.fc39 fedora 214 k libcurl-devel x86_64 8.3.0-1.fc40 copr_base 901 k xz-devel x86_64 5.4.4-1.fc39 fedora 66 k zlib-ng-compat-devel x86_64 2.1.3-4.fc40 copr_base 34 k Installing dependencies: R-core x86_64 4.3.1-3.fc40 copr_base 61 M R-core-devel x86_64 4.3.1-3.fc40 copr_base 86 k R-java x86_64 4.3.1-3.fc40 copr_base 11 k R-java-devel x86_64 4.3.1-3.fc40 copr_base 11 k R-rpm-macros noarch 1.2.1-7.fc39 fedora 11 k abattis-cantarell-vf-fonts noarch 0.301-10.fc39 fedora 121 k alsa-lib x86_64 1.2.10-3.fc40 fedora 522 k annobin-docs noarch 12.26-1.fc40 fedora 94 k annobin-plugin-gcc x86_64 12.26-1.fc40 fedora 958 k avahi-libs x86_64 0.8-24.fc39 fedora 67 k brotli x86_64 1.1.0-1.fc40 fedora 20 k brotli-devel x86_64 1.1.0-1.fc40 fedora 34 k cairo x86_64 1.17.8-5.fc40 copr_base 705 k cmake-filesystem x86_64 3.27.4-8.fc40 fedora 19 k copy-jdk-configs noarch 4.1-3.fc39 fedora 28 k cpp x86_64 13.2.1-1.fc40 copr_base 11 M crypto-policies-scripts noarch 20230731-1.git5ed06e0.fc39 fedora 115 k cups-libs x86_64 1:2.4.6-6.fc40 copr_base 267 k dbus-libs x86_64 1:1.14.10-1.fc40 fedora 155 k default-fonts-core-sans noarch 4.0-9.fc40 fedora 32 k desktop-file-utils x86_64 0.26-9.fc39 fedora 72 k emacs-filesystem noarch 1:29.1-1.fc40 copr_base 8.9 k expat x86_64 2.5.0-3.fc39 fedora 110 k flexiblas x86_64 3.3.1-5.fc39 fedora 33 k flexiblas-devel x86_64 3.3.1-5.fc39 fedora 117 k flexiblas-netlib x86_64 3.3.1-5.fc39 fedora 3.1 M flexiblas-netlib64 x86_64 3.3.1-5.fc39 fedora 3.0 M flexiblas-openblas-openmp x86_64 3.3.1-5.fc39 fedora 17 k flexiblas-openblas-openmp64 x86_64 3.3.1-5.fc39 fedora 17 k fontconfig x86_64 2.14.2-5.fc40 fedora 297 k fontconfig-devel x86_64 2.14.2-5.fc40 fedora 165 k fonts-filesystem noarch 1:2.0.5-12.fc39 fedora 8.2 k freetype x86_64 2.13.1-2.fc40 copr_base 414 k freetype-devel x86_64 2.13.1-2.fc40 copr_base 913 k fribidi x86_64 1.0.13-2.fc39 fedora 91 k gc x86_64 8.2.2-4.fc39 fedora 110 k gcc x86_64 13.2.1-1.fc40 copr_base 34 M gcc-c++ x86_64 13.2.1-1.fc40 copr_base 13 M gcc-gfortran x86_64 13.2.1-1.fc40 copr_base 12 M gcc-plugin-annobin x86_64 13.2.1-1.fc40 copr_base 47 k gettext x86_64 0.22-2.fc39 fedora 1.1 M gettext-envsubst x86_64 0.22-2.fc39 fedora 36 k gettext-libs x86_64 0.22-2.fc39 fedora 328 k gettext-runtime x86_64 0.22-2.fc39 fedora 120 k glib2 x86_64 2.78.0-2.fc40 fedora 2.8 M glib2-devel x86_64 2.78.0-2.fc40 fedora 596 k glibc-devel x86_64 2.38.9000-9.fc40 fedora 89 k glibc-headers-x86 noarch 2.38.9000-9.fc40 fedora 573 k gnutls x86_64 3.8.1-1.fc40 fedora 1.1 M google-noto-fonts-common noarch 20230801-3.fc40 fedora 17 k google-noto-sans-vf-fonts noarch 20230801-3.fc40 fedora 583 k graphite2 x86_64 1.3.14-12.fc39 fedora 95 k graphite2-devel x86_64 1.3.14-12.fc39 fedora 20 k guile22 x86_64 2.2.7-9.fc39 fedora 6.5 M harfbuzz x86_64 8.2.0-1.fc40 fedora 974 k harfbuzz-devel x86_64 8.2.0-1.fc40 fedora 450 k harfbuzz-icu x86_64 8.2.0-1.fc40 fedora 17 k java-17-openjdk x86_64 1:17.0.8.0.7-1.fc39 fedora 407 k java-17-openjdk-devel x86_64 1:17.0.8.0.7-1.fc39 fedora 4.7 M java-17-openjdk-headless x86_64 1:17.0.8.0.7-1.fc39 fedora 44 M javapackages-filesystem noarch 6.2.0-3.fc40 fedora 12 k jbigkit-libs x86_64 2.1-26.fc39 fedora 53 k kernel-headers x86_64 6.6.0-0.rc2.git0.1.fc40 fedora 1.6 M libICE x86_64 1.0.10-12.fc40 fedora 70 k libRmath x86_64 4.3.1-3.fc40 copr_base 122 k libRmath-devel x86_64 4.3.1-3.fc40 copr_base 16 k libSM x86_64 1.2.3-14.fc40 fedora 41 k libX11 x86_64 1.8.6-3.fc40 fedora 650 k libX11-common noarch 1.8.6-3.fc40 fedora 175 k libX11-devel x86_64 1.8.6-3.fc40 fedora 1.0 M libX11-xcb x86_64 1.8.6-3.fc40 fedora 11 k libXau x86_64 1.0.11-4.fc40 fedora 31 k libXau-devel x86_64 1.0.11-4.fc40 fedora 14 k libXcomposite x86_64 0.4.5-11.fc40 fedora 23 k libXext x86_64 1.3.5-3.fc39 fedora 39 k libXft x86_64 2.3.8-4.fc40 fedora 72 k libXft-devel x86_64 2.3.8-4.fc40 fedora 50 k libXi x86_64 1.8.1-3.fc40 fedora 40 k libXmu x86_64 1.1.4-4.fc40 fedora 76 k libXrender x86_64 0.9.11-4.fc40 fedora 27 k libXrender-devel x86_64 0.9.11-4.fc40 fedora 19 k libXt x86_64 1.2.1-6.fc40 fedora 178 k libXtst x86_64 1.2.4-3.fc39 fedora 20 k libb2 x86_64 0.98.1-9.fc39 fedora 25 k libblkid-devel x86_64 2.39.2-1.fc40 copr_base 18 k libdatrie x86_64 0.2.13-7.fc39 fedora 32 k libffi-devel x86_64 3.4.4-4.fc39 fedora 29 k libfontenc x86_64 1.1.6-3.fc40 copr_base 32 k libgfortran x86_64 13.2.1-1.fc40 copr_base 903 k libicu x86_64 73.2-2.fc39 fedora 11 M libicu-devel x86_64 73.2-2.fc39 fedora 924 k libjpeg-turbo x86_64 2.1.4-3.fc39 fedora 183 k liblerc x86_64 4.0.0-4.fc39 fedora 201 k libmount-devel x86_64 2.39.2-1.fc40 copr_base 19 k libmpc x86_64 1.3.1-3.fc39 fedora 70 k libpng x86_64 2:1.6.37-15.fc39 fedora 119 k libpng-devel x86_64 2:1.6.37-15.fc39 fedora 291 k libquadmath x86_64 13.2.1-1.fc40 copr_base 195 k libquadmath-devel x86_64 13.2.1-1.fc40 copr_base 36 k libselinux-devel x86_64 3.5-5.fc39 fedora 151 k libsepol-devel x86_64 3.5-2.fc39 fedora 49 k libstdc++-devel x86_64 13.2.1-1.fc40 copr_base 2.5 M libthai x86_64 0.1.29-6.fc39 fedora 213 k libtiff x86_64 4.4.0-8.fc40 copr_base 201 k libtirpc-devel x86_64 1.3.3-1.rc2.fc39 fedora 125 k libtool-ltdl x86_64 2.4.7-8.fc40 fedora 36 k libwebp x86_64 1.3.2-1.fc40 fedora 284 k libxcb x86_64 1.13.1-12.fc39 fedora 233 k libxcb-devel x86_64 1.13.1-12.fc39 fedora 1.4 M libxcrypt-devel x86_64 4.4.36-2.fc39 fedora 30 k libxml2-devel x86_64 2.11.5-1.fc40 copr_base 498 k lksctp-tools x86_64 1.0.19-4.fc39 fedora 92 k lua x86_64 5.4.6-3.fc39 fedora 191 k lua-posix x86_64 36.2.1-3.fc39 fedora 143 k make x86_64 1:4.4.1-2.fc39 fedora 589 k mkfontscale x86_64 1.2.2-4.fc40 copr_base 33 k mpdecimal x86_64 2.5.1-7.fc39 fedora 89 k nettle x86_64 3.9.1-2.fc39 fedora 425 k nspr x86_64 4.35.0-13.fc40 copr_base 138 k nss x86_64 3.93.0-2.fc40 copr_base 696 k nss-softokn x86_64 3.93.0-2.fc40 copr_base 1.0 M nss-softokn-freebl x86_64 3.93.0-2.fc40 copr_base 327 k nss-sysinit x86_64 3.93.0-2.fc40 copr_base 19 k nss-util x86_64 3.93.0-2.fc40 copr_base 87 k openblas x86_64 0.3.21-6.fc39 fedora 35 k openblas-openmp x86_64 0.3.21-6.fc39 fedora 4.9 M openblas-openmp64 x86_64 0.3.21-6.fc39 fedora 4.8 M pango x86_64 1.51.0-1.fc40 fedora 343 k pcre2-devel x86_64 10.42-1.fc39.2 fedora 505 k pcre2-utf16 x86_64 10.42-1.fc39.2 fedora 212 k pcre2-utf32 x86_64 10.42-1.fc39.2 fedora 200 k pixman x86_64 0.42.2-2.fc39 fedora 288 k python-pip-wheel noarch 23.2.1-1.fc39 fedora 1.5 M python3 x86_64 3.12.0~rc2-1.fc40 fedora 26 k python3-libs x86_64 3.12.0~rc2-1.fc40 fedora 9.2 M python3-setuptools noarch 67.7.2-7.fc40 fedora 1.5 M sysprof-capture-devel x86_64 3.48.0-2.fc39 fedora 52 k tcl x86_64 1:8.6.13-1.fc40 copr_base 1.1 M tcl-devel x86_64 1:8.6.13-1.fc40 copr_base 164 k tk x86_64 1:8.6.13-1.fc40 fedora 1.6 M tk-devel x86_64 1:8.6.13-1.fc40 fedora 541 k tre x86_64 0.8.0-41.20140228gitc2f5d13.fc39 fedora 43 k tre-common noarch 0.8.0-41.20140228gitc2f5d13.fc39 fedora 31 k tre-devel x86_64 0.8.0-41.20140228gitc2f5d13.fc39 fedora 12 k ttmkfdir x86_64 3.0.9-69.fc40 copr_base 56 k tzdata-java noarch 2023c-3.fc40 fedora 48 k xdg-utils noarch 1.1.3-15.fc40 fedora 77 k xml-common noarch 0.6.3-61.fc39 fedora 31 k xorg-x11-fonts-Type1 noarch 7.5-36.fc39 fedora 504 k xorg-x11-proto-devel noarch 2023.2-3.fc40 fedora 298 k Transaction Summary ======================================================================================== Install 155 Packages Total download size: 264 M Installed size: 847 M Downloading Packages: (1/155): R-devel-4.3.1-3.fc40.x86_64.rpm 208 kB/s | 11 kB 00:00 (2/155): R-core-devel-4.3.1-3.fc40.x86_64.rpm 1.6 MB/s | 86 kB 00:00 (3/155): R-java-4.3.1-3.fc40.x86_64.rpm 123 kB/s | 11 kB 00:00 (4/155): R-java-devel-4.3.1-3.fc40.x86_64.rpm 118 kB/s | 11 kB 00:00 (5/155): cairo-1.17.8-5.fc40.x86_64.rpm 8.4 MB/s | 705 kB 00:00 (6/155): cups-libs-2.4.6-6.fc40.x86_64.rpm 1.4 MB/s | 267 kB 00:00 (7/155): cpp-13.2.1-1.fc40.x86_64.rpm 35 MB/s | 11 MB 00:00 (8/155): emacs-filesystem-29.1-1.fc40.noarch.rp 105 kB/s | 8.9 kB 00:00 (9/155): freetype-2.13.1-2.fc40.x86_64.rpm 3.7 MB/s | 414 kB 00:00 (10/155): freetype-devel-2.13.1-2.fc40.x86_64.r 9.2 MB/s | 913 kB 00:00 (11/155): gcc-c++-13.2.1-1.fc40.x86_64.rpm 9.2 MB/s | 13 MB 00:01 (12/155): gcc-13.2.1-1.fc40.x86_64.rpm 18 MB/s | 34 MB 00:01 (13/155): R-core-4.3.1-3.fc40.x86_64.rpm 24 MB/s | 61 MB 00:02 (14/155): gcc-plugin-annobin-13.2.1-1.fc40.x86_ 399 kB/s | 47 kB 00:00 (15/155): gcc-gfortran-13.2.1-1.fc40.x86_64.rpm 20 MB/s | 12 MB 00:00 (16/155): libRmath-4.3.1-3.fc40.x86_64.rpm 8.9 MB/s | 122 kB 00:00 (17/155): libRmath-devel-4.3.1-3.fc40.x86_64.rp 1.2 MB/s | 16 kB 00:00 (18/155): libblkid-devel-2.39.2-1.fc40.x86_64.r 2.0 MB/s | 18 kB 00:00 (19/155): libfontenc-1.1.6-3.fc40.x86_64.rpm 1.9 MB/s | 32 kB 00:00 (20/155): libcurl-devel-8.3.0-1.fc40.x86_64.rpm 45 MB/s | 901 kB 00:00 (21/155): libgfortran-13.2.1-1.fc40.x86_64.rpm 43 MB/s | 903 kB 00:00 (22/155): libmount-devel-2.39.2-1.fc40.x86_64.r 1.4 MB/s | 19 kB 00:00 (23/155): libquadmath-13.2.1-1.fc40.x86_64.rpm 18 MB/s | 195 kB 00:00 (24/155): libquadmath-devel-13.2.1-1.fc40.x86_6 3.9 MB/s | 36 kB 00:00 (25/155): libtiff-4.4.0-8.fc40.x86_64.rpm 19 MB/s | 201 kB 00:00 (26/155): libxml2-devel-2.11.5-1.fc40.x86_64.rp 30 MB/s | 498 kB 00:00 (27/155): mkfontscale-1.2.2-4.fc40.x86_64.rpm 1.9 MB/s | 33 kB 00:00 (28/155): libstdc++-devel-13.2.1-1.fc40.x86_64. 51 MB/s | 2.5 MB 00:00 (29/155): nspr-4.35.0-13.fc40.x86_64.rpm 5.5 MB/s | 138 kB 00:00 (30/155): nss-3.93.0-2.fc40.x86_64.rpm 26 MB/s | 696 kB 00:00 (31/155): nss-softokn-3.93.0-2.fc40.x86_64.rpm 47 MB/s | 1.0 MB 00:00 (32/155): nss-softokn-freebl-3.93.0-2.fc40.x86_ 14 MB/s | 327 kB 00:00 (33/155): nss-sysinit-3.93.0-2.fc40.x86_64.rpm 1.0 MB/s | 19 kB 00:00 (34/155): nss-util-3.93.0-2.fc40.x86_64.rpm 8.9 MB/s | 87 kB 00:00 (35/155): tcl-devel-8.6.13-1.fc40.x86_64.rpm 8.8 MB/s | 164 kB 00:00 (36/155): tcl-8.6.13-1.fc40.x86_64.rpm 46 MB/s | 1.1 MB 00:00 (37/155): ttmkfdir-3.0.9-69.fc40.x86_64.rpm 3.3 MB/s | 56 kB 00:00 (38/155): zlib-ng-compat-devel-2.1.3-4.fc40.x86 3.8 MB/s | 34 kB 00:00 (39/155): R-rpm-macros-1.2.1-7.fc39.noarch.rpm 139 kB/s | 11 kB 00:00 (40/155): abattis-cantarell-vf-fonts-0.301-10.f 946 kB/s | 121 kB 00:00 (41/155): annobin-docs-12.26-1.fc40.noarch.rpm 1.8 MB/s | 94 kB 00:00 (42/155): avahi-libs-0.8-24.fc39.x86_64.rpm 3.1 MB/s | 67 kB 00:00 (43/155): alsa-lib-1.2.10-3.fc40.x86_64.rpm 3.2 MB/s | 522 kB 00:00 (44/155): brotli-1.1.0-1.fc40.x86_64.rpm 1.1 MB/s | 20 kB 00:00 (45/155): brotli-devel-1.1.0-1.fc40.x86_64.rpm 1.8 MB/s | 34 kB 00:00 (46/155): annobin-plugin-gcc-12.26-1.fc40.x86_6 14 MB/s | 958 kB 00:00 (47/155): cmake-filesystem-3.27.4-8.fc40.x86_64 1.0 MB/s | 19 kB 00:00 (48/155): bzip2-devel-1.0.8-16.fc39.x86_64.rpm 5.5 MB/s | 214 kB 00:00 (49/155): copy-jdk-configs-4.1-3.fc39.noarch.rp 1.5 MB/s | 28 kB 00:00 (50/155): crypto-policies-scripts-20230731-1.gi 6.0 MB/s | 115 kB 00:00 (51/155): dbus-libs-1.14.10-1.fc40.x86_64.rpm 7.4 MB/s | 155 kB 00:00 (52/155): default-fonts-core-sans-4.0-9.fc40.no 1.8 MB/s | 32 kB 00:00 (53/155): desktop-file-utils-0.26-9.fc39.x86_64 3.8 MB/s | 72 kB 00:00 (54/155): flexiblas-3.3.1-5.fc39.x86_64.rpm 1.8 MB/s | 33 kB 00:00 (55/155): expat-2.5.0-3.fc39.x86_64.rpm 5.4 MB/s | 110 kB 00:00 (56/155): flexiblas-devel-3.3.1-5.fc39.x86_64.r 5.6 MB/s | 117 kB 00:00 (57/155): flexiblas-openblas-openmp-3.3.1-5.fc3 960 kB/s | 17 kB 00:00 (58/155): flexiblas-openblas-openmp64-3.3.1-5.f 561 kB/s | 17 kB 00:00 (59/155): fontconfig-2.14.2-5.fc40.x86_64.rpm 11 MB/s | 297 kB 00:00 (60/155): flexiblas-netlib-3.3.1-5.fc39.x86_64. 32 MB/s | 3.1 MB 00:00 (61/155): fontconfig-devel-2.14.2-5.fc40.x86_64 8.2 MB/s | 165 kB 00:00 (62/155): fonts-filesystem-2.0.5-12.fc39.noarch 465 kB/s | 8.2 kB 00:00 (63/155): fribidi-1.0.13-2.fc39.x86_64.rpm 4.7 MB/s | 91 kB 00:00 (64/155): gc-8.2.2-4.fc39.x86_64.rpm 5.3 MB/s | 110 kB 00:00 (65/155): gettext-envsubst-0.22-2.fc39.x86_64.r 2.0 MB/s | 36 kB 00:00 (66/155): gettext-0.22-2.fc39.x86_64.rpm 25 MB/s | 1.1 MB 00:00 (67/155): gettext-libs-0.22-2.fc39.x86_64.rpm 14 MB/s | 328 kB 00:00 (68/155): gettext-runtime-0.22-2.fc39.x86_64.rp 5.1 MB/s | 120 kB 00:00 (69/155): glib2-devel-2.78.0-2.fc40.x86_64.rpm 23 MB/s | 596 kB 00:00 (70/155): flexiblas-netlib64-3.3.1-5.fc39.x86_6 13 MB/s | 3.0 MB 00:00 (71/155): glib2-2.78.0-2.fc40.x86_64.rpm 45 MB/s | 2.8 MB 00:00 (72/155): glibc-devel-2.38.9000-9.fc40.x86_64.r 3.9 MB/s | 89 kB 00:00 (73/155): google-noto-fonts-common-20230801-3.f 955 kB/s | 17 kB 00:00 (74/155): glibc-headers-x86-2.38.9000-9.fc40.no 22 MB/s | 573 kB 00:00 (75/155): gnutls-3.8.1-1.fc40.x86_64.rpm 35 MB/s | 1.1 MB 00:00 (76/155): graphite2-1.3.14-12.fc39.x86_64.rpm 4.8 MB/s | 95 kB 00:00 (77/155): google-noto-sans-vf-fonts-20230801-3. 23 MB/s | 583 kB 00:00 (78/155): graphite2-devel-1.3.14-12.fc39.x86_64 1.1 MB/s | 20 kB 00:00 (79/155): harfbuzz-devel-8.2.0-1.fc40.x86_64.rp 3.5 MB/s | 450 kB 00:00 (80/155): harfbuzz-icu-8.2.0-1.fc40.x86_64.rpm 858 kB/s | 17 kB 00:00 (81/155): guile22-2.2.7-9.fc39.x86_64.rpm 37 MB/s | 6.5 MB 00:00 (82/155): java-17-openjdk-17.0.8.0.7-1.fc39.x86 17 MB/s | 407 kB 00:00 (83/155): harfbuzz-8.2.0-1.fc40.x86_64.rpm 4.3 MB/s | 974 kB 00:00 (84/155): javapackages-filesystem-6.2.0-3.fc40. 672 kB/s | 12 kB 00:00 (85/155): jbigkit-libs-2.1-26.fc39.x86_64.rpm 2.8 MB/s | 53 kB 00:00 (86/155): java-17-openjdk-devel-17.0.8.0.7-1.fc 32 MB/s | 4.7 MB 00:00 (87/155): kernel-headers-6.6.0-0.rc2.git0.1.fc4 24 MB/s | 1.6 MB 00:00 (88/155): libSM-1.2.3-14.fc40.x86_64.rpm 2.2 MB/s | 41 kB 00:00 (89/155): libICE-1.0.10-12.fc40.x86_64.rpm 3.5 MB/s | 70 kB 00:00 (90/155): libX11-common-1.8.6-3.fc40.noarch.rpm 7.1 MB/s | 175 kB 00:00 (91/155): libX11-1.8.6-3.fc40.x86_64.rpm 16 MB/s | 650 kB 00:00 (92/155): libX11-xcb-1.8.6-3.fc40.x86_64.rpm 648 kB/s | 11 kB 00:00 (93/155): libXau-1.0.11-4.fc40.x86_64.rpm 1.7 MB/s | 31 kB 00:00 (94/155): libXau-devel-1.0.11-4.fc40.x86_64.rpm 771 kB/s | 14 kB 00:00 (95/155): libX11-devel-1.8.6-3.fc40.x86_64.rpm 15 MB/s | 1.0 MB 00:00 (96/155): libXcomposite-0.4.5-11.fc40.x86_64.rp 1.3 MB/s | 23 kB 00:00 (97/155): libXext-1.3.5-3.fc39.x86_64.rpm 2.1 MB/s | 39 kB 00:00 (98/155): libXft-2.3.8-4.fc40.x86_64.rpm 3.7 MB/s | 72 kB 00:00 (99/155): libXft-devel-2.3.8-4.fc40.x86_64.rpm 2.6 MB/s | 50 kB 00:00 (100/155): libXi-1.8.1-3.fc40.x86_64.rpm 2.1 MB/s | 40 kB 00:00 (101/155): libXmu-1.1.4-4.fc40.x86_64.rpm 3.6 MB/s | 76 kB 00:00 (102/155): libXrender-0.9.11-4.fc40.x86_64.rpm 1.5 MB/s | 27 kB 00:00 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tre-0.8.0-41.20140228gitc2f5d13.fc39 1.4 MB/s | 43 kB 00:00 (147/155): tre-devel-0.8.0-41.20140228gitc2f5d1 615 kB/s | 12 kB 00:00 (148/155): tre-common-0.8.0-41.20140228gitc2f5d 1.4 MB/s | 31 kB 00:00 (149/155): tzdata-java-2023c-3.fc40.noarch.rpm 2.5 MB/s | 48 kB 00:00 (150/155): xdg-utils-1.1.3-15.fc40.noarch.rpm 3.5 MB/s | 77 kB 00:00 (151/155): xml-common-0.6.3-61.fc39.noarch.rpm 1.7 MB/s | 31 kB 00:00 (152/155): java-17-openjdk-headless-17.0.8.0.7- 27 MB/s | 44 MB 00:01 (153/155): xorg-x11-fonts-Type1-7.5-36.fc39.noa 7.4 MB/s | 504 kB 00:00 (154/155): xorg-x11-proto-devel-2023.2-3.fc40.n 5.5 MB/s | 298 kB 00:00 (155/155): xz-devel-5.4.4-1.fc39.x86_64.rpm 3.2 MB/s | 66 kB 00:00 -------------------------------------------------------------------------------- Total 51 MB/s | 264 MB 00:05 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: copy-jdk-configs-4.1-3.fc39.noarch 1/1 Running scriptlet: java-17-openjdk-headless-1:17.0.8.0.7-1.fc39.x86_64 1/1 Preparing : 1/1 Installing : zlib-ng-compat-devel-2.1.3-4.fc40.x86_64 1/155 Installing : nspr-4.35.0-13.fc40.x86_64 2/155 Installing : libgfortran-13.2.1-1.fc40.x86_64 3/155 Installing : nss-util-3.93.0-2.fc40.x86_64 4/155 Installing : xorg-x11-proto-devel-2023.2-3.fc40.noarch 5/155 Installing : libpng-2:1.6.37-15.fc39.x86_64 6/155 Installing : libmpc-1.3.1-3.fc39.x86_64 7/155 Installing : libquadmath-13.2.1-1.fc40.x86_64 8/155 Installing : libicu-73.2-2.fc39.x86_64 9/155 Installing : fonts-filesystem-1:2.0.5-12.fc39.noarch 10/155 Installing : tcl-1:8.6.13-1.fc40.x86_64 11/155 Installing : tcl-devel-1:8.6.13-1.fc40.x86_64 12/155 Installing : libicu-devel-73.2-2.fc39.x86_64 13/155 Installing : xz-devel-5.4.4-1.fc39.x86_64 14/155 Installing : openblas-0.3.21-6.fc39.x86_64 15/155 Installing : libjpeg-turbo-2.1.4-3.fc39.x86_64 16/155 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R-java-4.3.1-3.fc40.x86_64 4/155 Verifying : R-java-devel-4.3.1-3.fc40.x86_64 5/155 Verifying : cairo-1.17.8-5.fc40.x86_64 6/155 Verifying : cpp-13.2.1-1.fc40.x86_64 7/155 Verifying : cups-libs-1:2.4.6-6.fc40.x86_64 8/155 Verifying : emacs-filesystem-1:29.1-1.fc40.noarch 9/155 Verifying : freetype-2.13.1-2.fc40.x86_64 10/155 Verifying : freetype-devel-2.13.1-2.fc40.x86_64 11/155 Verifying : gcc-13.2.1-1.fc40.x86_64 12/155 Verifying : gcc-c++-13.2.1-1.fc40.x86_64 13/155 Verifying : gcc-gfortran-13.2.1-1.fc40.x86_64 14/155 Verifying : gcc-plugin-annobin-13.2.1-1.fc40.x86_64 15/155 Verifying : libRmath-4.3.1-3.fc40.x86_64 16/155 Verifying : libRmath-devel-4.3.1-3.fc40.x86_64 17/155 Verifying : libblkid-devel-2.39.2-1.fc40.x86_64 18/155 Verifying : libcurl-devel-8.3.0-1.fc40.x86_64 19/155 Verifying : libfontenc-1.1.6-3.fc40.x86_64 20/155 Verifying : libgfortran-13.2.1-1.fc40.x86_64 21/155 Verifying : libmount-devel-2.39.2-1.fc40.x86_64 22/155 Verifying : libquadmath-13.2.1-1.fc40.x86_64 23/155 Verifying : libquadmath-devel-13.2.1-1.fc40.x86_64 24/155 Verifying : libstdc++-devel-13.2.1-1.fc40.x86_64 25/155 Verifying : libtiff-4.4.0-8.fc40.x86_64 26/155 Verifying : libxml2-devel-2.11.5-1.fc40.x86_64 27/155 Verifying : mkfontscale-1.2.2-4.fc40.x86_64 28/155 Verifying : nspr-4.35.0-13.fc40.x86_64 29/155 Verifying : nss-3.93.0-2.fc40.x86_64 30/155 Verifying : nss-softokn-3.93.0-2.fc40.x86_64 31/155 Verifying : nss-softokn-freebl-3.93.0-2.fc40.x86_64 32/155 Verifying : nss-sysinit-3.93.0-2.fc40.x86_64 33/155 Verifying : nss-util-3.93.0-2.fc40.x86_64 34/155 Verifying : tcl-1:8.6.13-1.fc40.x86_64 35/155 Verifying : tcl-devel-1:8.6.13-1.fc40.x86_64 36/155 Verifying : ttmkfdir-3.0.9-69.fc40.x86_64 37/155 Verifying : zlib-ng-compat-devel-2.1.3-4.fc40.x86_64 38/155 Verifying : R-rpm-macros-1.2.1-7.fc39.noarch 39/155 Verifying : abattis-cantarell-vf-fonts-0.301-10.fc39.noarch 40/155 Verifying : alsa-lib-1.2.10-3.fc40.x86_64 41/155 Verifying : annobin-docs-12.26-1.fc40.noarch 42/155 Verifying : annobin-plugin-gcc-12.26-1.fc40.x86_64 43/155 Verifying : avahi-libs-0.8-24.fc39.x86_64 44/155 Verifying : brotli-1.1.0-1.fc40.x86_64 45/155 Verifying : brotli-devel-1.1.0-1.fc40.x86_64 46/155 Verifying : bzip2-devel-1.0.8-16.fc39.x86_64 47/155 Verifying : cmake-filesystem-3.27.4-8.fc40.x86_64 48/155 Verifying : copy-jdk-configs-4.1-3.fc39.noarch 49/155 Verifying : crypto-policies-scripts-20230731-1.git5ed06e0.fc 50/155 Verifying : dbus-libs-1:1.14.10-1.fc40.x86_64 51/155 Verifying : default-fonts-core-sans-4.0-9.fc40.noarch 52/155 Verifying : desktop-file-utils-0.26-9.fc39.x86_64 53/155 Verifying : expat-2.5.0-3.fc39.x86_64 54/155 Verifying : flexiblas-3.3.1-5.fc39.x86_64 55/155 Verifying : flexiblas-devel-3.3.1-5.fc39.x86_64 56/155 Verifying : flexiblas-netlib-3.3.1-5.fc39.x86_64 57/155 Verifying : flexiblas-netlib64-3.3.1-5.fc39.x86_64 58/155 Verifying : flexiblas-openblas-openmp-3.3.1-5.fc39.x86_64 59/155 Verifying : flexiblas-openblas-openmp64-3.3.1-5.fc39.x86_64 60/155 Verifying : fontconfig-2.14.2-5.fc40.x86_64 61/155 Verifying : fontconfig-devel-2.14.2-5.fc40.x86_64 62/155 Verifying : fonts-filesystem-1:2.0.5-12.fc39.noarch 63/155 Verifying : fribidi-1.0.13-2.fc39.x86_64 64/155 Verifying : gc-8.2.2-4.fc39.x86_64 65/155 Verifying : gettext-0.22-2.fc39.x86_64 66/155 Verifying : gettext-envsubst-0.22-2.fc39.x86_64 67/155 Verifying : gettext-libs-0.22-2.fc39.x86_64 68/155 Verifying : gettext-runtime-0.22-2.fc39.x86_64 69/155 Verifying : glib2-2.78.0-2.fc40.x86_64 70/155 Verifying : glib2-devel-2.78.0-2.fc40.x86_64 71/155 Verifying : glibc-devel-2.38.9000-9.fc40.x86_64 72/155 Verifying : glibc-headers-x86-2.38.9000-9.fc40.noarch 73/155 Verifying : gnutls-3.8.1-1.fc40.x86_64 74/155 Verifying : google-noto-fonts-common-20230801-3.fc40.noarch 75/155 Verifying : google-noto-sans-vf-fonts-20230801-3.fc40.noarch 76/155 Verifying : graphite2-1.3.14-12.fc39.x86_64 77/155 Verifying : graphite2-devel-1.3.14-12.fc39.x86_64 78/155 Verifying : guile22-2.2.7-9.fc39.x86_64 79/155 Verifying : harfbuzz-8.2.0-1.fc40.x86_64 80/155 Verifying : harfbuzz-devel-8.2.0-1.fc40.x86_64 81/155 Verifying : harfbuzz-icu-8.2.0-1.fc40.x86_64 82/155 Verifying : java-17-openjdk-1:17.0.8.0.7-1.fc39.x86_64 83/155 Verifying : java-17-openjdk-devel-1:17.0.8.0.7-1.fc39.x86_64 84/155 Verifying : java-17-openjdk-headless-1:17.0.8.0.7-1.fc39.x86 85/155 Verifying : javapackages-filesystem-6.2.0-3.fc40.noarch 86/155 Verifying : jbigkit-libs-2.1-26.fc39.x86_64 87/155 Verifying : kernel-headers-6.6.0-0.rc2.git0.1.fc40.x86_64 88/155 Verifying : libICE-1.0.10-12.fc40.x86_64 89/155 Verifying : libSM-1.2.3-14.fc40.x86_64 90/155 Verifying : libX11-1.8.6-3.fc40.x86_64 91/155 Verifying : libX11-common-1.8.6-3.fc40.noarch 92/155 Verifying : libX11-devel-1.8.6-3.fc40.x86_64 93/155 Verifying : libX11-xcb-1.8.6-3.fc40.x86_64 94/155 Verifying : libXau-1.0.11-4.fc40.x86_64 95/155 Verifying : libXau-devel-1.0.11-4.fc40.x86_64 96/155 Verifying : libXcomposite-0.4.5-11.fc40.x86_64 97/155 Verifying : libXext-1.3.5-3.fc39.x86_64 98/155 Verifying : libXft-2.3.8-4.fc40.x86_64 99/155 Verifying : libXft-devel-2.3.8-4.fc40.x86_64 100/155 Verifying : libXi-1.8.1-3.fc40.x86_64 101/155 Verifying : libXmu-1.1.4-4.fc40.x86_64 102/155 Verifying : libXrender-0.9.11-4.fc40.x86_64 103/155 Verifying : libXrender-devel-0.9.11-4.fc40.x86_64 104/155 Verifying : libXt-1.2.1-6.fc40.x86_64 105/155 Verifying : libXtst-1.2.4-3.fc39.x86_64 106/155 Verifying : libb2-0.98.1-9.fc39.x86_64 107/155 Verifying : libdatrie-0.2.13-7.fc39.x86_64 108/155 Verifying : libffi-devel-3.4.4-4.fc39.x86_64 109/155 Verifying : libicu-73.2-2.fc39.x86_64 110/155 Verifying : libicu-devel-73.2-2.fc39.x86_64 111/155 Verifying : libjpeg-turbo-2.1.4-3.fc39.x86_64 112/155 Verifying : liblerc-4.0.0-4.fc39.x86_64 113/155 Verifying : libmpc-1.3.1-3.fc39.x86_64 114/155 Verifying : libpng-2:1.6.37-15.fc39.x86_64 115/155 Verifying : libpng-devel-2:1.6.37-15.fc39.x86_64 116/155 Verifying : libselinux-devel-3.5-5.fc39.x86_64 117/155 Verifying : libsepol-devel-3.5-2.fc39.x86_64 118/155 Verifying : libthai-0.1.29-6.fc39.x86_64 119/155 Verifying : libtirpc-devel-1.3.3-1.rc2.fc39.x86_64 120/155 Verifying : libtool-ltdl-2.4.7-8.fc40.x86_64 121/155 Verifying : libwebp-1.3.2-1.fc40.x86_64 122/155 Verifying : libxcb-1.13.1-12.fc39.x86_64 123/155 Verifying : libxcb-devel-1.13.1-12.fc39.x86_64 124/155 Verifying : libxcrypt-devel-4.4.36-2.fc39.x86_64 125/155 Verifying : lksctp-tools-1.0.19-4.fc39.x86_64 126/155 Verifying : lua-5.4.6-3.fc39.x86_64 127/155 Verifying : lua-posix-36.2.1-3.fc39.x86_64 128/155 Verifying : make-1:4.4.1-2.fc39.x86_64 129/155 Verifying : mpdecimal-2.5.1-7.fc39.x86_64 130/155 Verifying : nettle-3.9.1-2.fc39.x86_64 131/155 Verifying : openblas-0.3.21-6.fc39.x86_64 132/155 Verifying : openblas-openmp-0.3.21-6.fc39.x86_64 133/155 Verifying : openblas-openmp64-0.3.21-6.fc39.x86_64 134/155 Verifying : pango-1.51.0-1.fc40.x86_64 135/155 Verifying : pcre2-devel-10.42-1.fc39.2.x86_64 136/155 Verifying : pcre2-utf16-10.42-1.fc39.2.x86_64 137/155 Verifying : pcre2-utf32-10.42-1.fc39.2.x86_64 138/155 Verifying : pixman-0.42.2-2.fc39.x86_64 139/155 Verifying : python-pip-wheel-23.2.1-1.fc39.noarch 140/155 Verifying : python3-3.12.0~rc2-1.fc40.x86_64 141/155 Verifying : python3-libs-3.12.0~rc2-1.fc40.x86_64 142/155 Verifying : python3-setuptools-67.7.2-7.fc40.noarch 143/155 Verifying : sysprof-capture-devel-3.48.0-2.fc39.x86_64 144/155 Verifying : tk-1:8.6.13-1.fc40.x86_64 145/155 Verifying : tk-devel-1:8.6.13-1.fc40.x86_64 146/155 Verifying : tre-0.8.0-41.20140228gitc2f5d13.fc39.x86_64 147/155 Verifying : tre-common-0.8.0-41.20140228gitc2f5d13.fc39.noar 148/155 Verifying : tre-devel-0.8.0-41.20140228gitc2f5d13.fc39.x86_6 149/155 Verifying : tzdata-java-2023c-3.fc40.noarch 150/155 Verifying : xdg-utils-1.1.3-15.fc40.noarch 151/155 Verifying : xml-common-0.6.3-61.fc39.noarch 152/155 Verifying : xorg-x11-fonts-Type1-7.5-36.fc39.noarch 153/155 Verifying : xorg-x11-proto-devel-2023.2-3.fc40.noarch 154/155 Verifying : xz-devel-5.4.4-1.fc39.x86_64 155/155 Installed: R-core-4.3.1-3.fc40.x86_64 R-core-devel-4.3.1-3.fc40.x86_64 R-devel-4.3.1-3.fc40.x86_64 R-java-4.3.1-3.fc40.x86_64 R-java-devel-4.3.1-3.fc40.x86_64 R-rpm-macros-1.2.1-7.fc39.noarch abattis-cantarell-vf-fonts-0.301-10.fc39.noarch alsa-lib-1.2.10-3.fc40.x86_64 annobin-docs-12.26-1.fc40.noarch annobin-plugin-gcc-12.26-1.fc40.x86_64 avahi-libs-0.8-24.fc39.x86_64 brotli-1.1.0-1.fc40.x86_64 brotli-devel-1.1.0-1.fc40.x86_64 bzip2-devel-1.0.8-16.fc39.x86_64 cairo-1.17.8-5.fc40.x86_64 cmake-filesystem-3.27.4-8.fc40.x86_64 copy-jdk-configs-4.1-3.fc39.noarch cpp-13.2.1-1.fc40.x86_64 crypto-policies-scripts-20230731-1.git5ed06e0.fc39.noarch cups-libs-1:2.4.6-6.fc40.x86_64 dbus-libs-1:1.14.10-1.fc40.x86_64 default-fonts-core-sans-4.0-9.fc40.noarch desktop-file-utils-0.26-9.fc39.x86_64 emacs-filesystem-1:29.1-1.fc40.noarch expat-2.5.0-3.fc39.x86_64 flexiblas-3.3.1-5.fc39.x86_64 flexiblas-devel-3.3.1-5.fc39.x86_64 flexiblas-netlib-3.3.1-5.fc39.x86_64 flexiblas-netlib64-3.3.1-5.fc39.x86_64 flexiblas-openblas-openmp-3.3.1-5.fc39.x86_64 flexiblas-openblas-openmp64-3.3.1-5.fc39.x86_64 fontconfig-2.14.2-5.fc40.x86_64 fontconfig-devel-2.14.2-5.fc40.x86_64 fonts-filesystem-1:2.0.5-12.fc39.noarch freetype-2.13.1-2.fc40.x86_64 freetype-devel-2.13.1-2.fc40.x86_64 fribidi-1.0.13-2.fc39.x86_64 gc-8.2.2-4.fc39.x86_64 gcc-13.2.1-1.fc40.x86_64 gcc-c++-13.2.1-1.fc40.x86_64 gcc-gfortran-13.2.1-1.fc40.x86_64 gcc-plugin-annobin-13.2.1-1.fc40.x86_64 gettext-0.22-2.fc39.x86_64 gettext-envsubst-0.22-2.fc39.x86_64 gettext-libs-0.22-2.fc39.x86_64 gettext-runtime-0.22-2.fc39.x86_64 glib2-2.78.0-2.fc40.x86_64 glib2-devel-2.78.0-2.fc40.x86_64 glibc-devel-2.38.9000-9.fc40.x86_64 glibc-headers-x86-2.38.9000-9.fc40.noarch gnutls-3.8.1-1.fc40.x86_64 google-noto-fonts-common-20230801-3.fc40.noarch google-noto-sans-vf-fonts-20230801-3.fc40.noarch graphite2-1.3.14-12.fc39.x86_64 graphite2-devel-1.3.14-12.fc39.x86_64 guile22-2.2.7-9.fc39.x86_64 harfbuzz-8.2.0-1.fc40.x86_64 harfbuzz-devel-8.2.0-1.fc40.x86_64 harfbuzz-icu-8.2.0-1.fc40.x86_64 java-17-openjdk-1:17.0.8.0.7-1.fc39.x86_64 java-17-openjdk-devel-1:17.0.8.0.7-1.fc39.x86_64 java-17-openjdk-headless-1:17.0.8.0.7-1.fc39.x86_64 javapackages-filesystem-6.2.0-3.fc40.noarch jbigkit-libs-2.1-26.fc39.x86_64 kernel-headers-6.6.0-0.rc2.git0.1.fc40.x86_64 libICE-1.0.10-12.fc40.x86_64 libRmath-4.3.1-3.fc40.x86_64 libRmath-devel-4.3.1-3.fc40.x86_64 libSM-1.2.3-14.fc40.x86_64 libX11-1.8.6-3.fc40.x86_64 libX11-common-1.8.6-3.fc40.noarch libX11-devel-1.8.6-3.fc40.x86_64 libX11-xcb-1.8.6-3.fc40.x86_64 libXau-1.0.11-4.fc40.x86_64 libXau-devel-1.0.11-4.fc40.x86_64 libXcomposite-0.4.5-11.fc40.x86_64 libXext-1.3.5-3.fc39.x86_64 libXft-2.3.8-4.fc40.x86_64 libXft-devel-2.3.8-4.fc40.x86_64 libXi-1.8.1-3.fc40.x86_64 libXmu-1.1.4-4.fc40.x86_64 libXrender-0.9.11-4.fc40.x86_64 libXrender-devel-0.9.11-4.fc40.x86_64 libXt-1.2.1-6.fc40.x86_64 libXtst-1.2.4-3.fc39.x86_64 libb2-0.98.1-9.fc39.x86_64 libblkid-devel-2.39.2-1.fc40.x86_64 libcurl-devel-8.3.0-1.fc40.x86_64 libdatrie-0.2.13-7.fc39.x86_64 libffi-devel-3.4.4-4.fc39.x86_64 libfontenc-1.1.6-3.fc40.x86_64 libgfortran-13.2.1-1.fc40.x86_64 libicu-73.2-2.fc39.x86_64 libicu-devel-73.2-2.fc39.x86_64 libjpeg-turbo-2.1.4-3.fc39.x86_64 liblerc-4.0.0-4.fc39.x86_64 libmount-devel-2.39.2-1.fc40.x86_64 libmpc-1.3.1-3.fc39.x86_64 libpng-2:1.6.37-15.fc39.x86_64 libpng-devel-2:1.6.37-15.fc39.x86_64 libquadmath-13.2.1-1.fc40.x86_64 libquadmath-devel-13.2.1-1.fc40.x86_64 libselinux-devel-3.5-5.fc39.x86_64 libsepol-devel-3.5-2.fc39.x86_64 libstdc++-devel-13.2.1-1.fc40.x86_64 libthai-0.1.29-6.fc39.x86_64 libtiff-4.4.0-8.fc40.x86_64 libtirpc-devel-1.3.3-1.rc2.fc39.x86_64 libtool-ltdl-2.4.7-8.fc40.x86_64 libwebp-1.3.2-1.fc40.x86_64 libxcb-1.13.1-12.fc39.x86_64 libxcb-devel-1.13.1-12.fc39.x86_64 libxcrypt-devel-4.4.36-2.fc39.x86_64 libxml2-devel-2.11.5-1.fc40.x86_64 lksctp-tools-1.0.19-4.fc39.x86_64 lua-5.4.6-3.fc39.x86_64 lua-posix-36.2.1-3.fc39.x86_64 make-1:4.4.1-2.fc39.x86_64 mkfontscale-1.2.2-4.fc40.x86_64 mpdecimal-2.5.1-7.fc39.x86_64 nettle-3.9.1-2.fc39.x86_64 nspr-4.35.0-13.fc40.x86_64 nss-3.93.0-2.fc40.x86_64 nss-softokn-3.93.0-2.fc40.x86_64 nss-softokn-freebl-3.93.0-2.fc40.x86_64 nss-sysinit-3.93.0-2.fc40.x86_64 nss-util-3.93.0-2.fc40.x86_64 openblas-0.3.21-6.fc39.x86_64 openblas-openmp-0.3.21-6.fc39.x86_64 openblas-openmp64-0.3.21-6.fc39.x86_64 pango-1.51.0-1.fc40.x86_64 pcre2-devel-10.42-1.fc39.2.x86_64 pcre2-utf16-10.42-1.fc39.2.x86_64 pcre2-utf32-10.42-1.fc39.2.x86_64 pixman-0.42.2-2.fc39.x86_64 python-pip-wheel-23.2.1-1.fc39.noarch python3-3.12.0~rc2-1.fc40.x86_64 python3-libs-3.12.0~rc2-1.fc40.x86_64 python3-setuptools-67.7.2-7.fc40.noarch sysprof-capture-devel-3.48.0-2.fc39.x86_64 tcl-1:8.6.13-1.fc40.x86_64 tcl-devel-1:8.6.13-1.fc40.x86_64 tk-1:8.6.13-1.fc40.x86_64 tk-devel-1:8.6.13-1.fc40.x86_64 tre-0.8.0-41.20140228gitc2f5d13.fc39.x86_64 tre-common-0.8.0-41.20140228gitc2f5d13.fc39.noarch tre-devel-0.8.0-41.20140228gitc2f5d13.fc39.x86_64 ttmkfdir-3.0.9-69.fc40.x86_64 tzdata-java-2023c-3.fc40.noarch xdg-utils-1.1.3-15.fc40.noarch xml-common-0.6.3-61.fc39.noarch xorg-x11-fonts-Type1-7.5-36.fc39.noarch xorg-x11-proto-devel-2023.2-3.fc40.noarch xz-devel-5.4.4-1.fc39.x86_64 zlib-ng-compat-devel-2.1.3-4.fc40.x86_64 Complete! Finish: build setup for R-Rhtslib-1.28.0-4.fc40.src.rpm Start: rpmbuild R-Rhtslib-1.28.0-4.fc40.src.rpm warning: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N) Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1689724800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.DGSbrY + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf Rhtslib + /usr/bin/mkdir -p Rhtslib + cd Rhtslib + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/Rhtslib_1.28.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + rm -rf /builddir/build/BUILD/Rhtslib-SPECPARTS + /usr/bin/mkdir -p /builddir/build/BUILD/Rhtslib-SPECPARTS + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (R-Rhtslib-zlibbioc.patch):' Patch #0 (R-Rhtslib-zlibbioc.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .zlibbioc --fuzz=0 patching file Rhtslib/DESCRIPTION patching file Rhtslib/NAMESPACE Patch #1 (R-Rhtslib-buildroot-fix.patch): + echo 'Patch #1 (R-Rhtslib-buildroot-fix.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .fix --fuzz=0 patching file Rhtslib/src/Makevars.common + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.ODs0Rf + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Rhtslib + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.1rh0fX + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.x86_64 ++ dirname /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.x86_64 + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Rhtslib + mkdir -p /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.x86_64/usr/lib64/R/library + R CMD INSTALL -l /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.x86_64/usr/lib64/R/library Rhtslib * installing *source* package ‘Rhtslib’ ... ** using non-staged installation via StagedInstall field ** libs using C compiler: ‘gcc (GCC) 13.2.1 20230728 (Red Hat 13.2.1-1)’ cd "htslib-1.7" && make -f "/usr/lib64/R/etc/Makeconf" -f "Makefile.Rhtslib" make[1]: Entering directory '/builddir/build/BUILD/Rhtslib/Rhtslib/src/htslib-1.7' Makefile.Rhtslib:131: warning: overriding recipe for target '.c.o' /usr/lib64/R/etc/Makeconf:191: warning: ignoring old recipe for target '.c.o' gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kfunc.o kfunc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o knetfile.o knetfile.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kstring.o kstring.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bcf_sr_sort.o bcf_sr_sort.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bgzf.o bgzf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o errmod.o errmod.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o faidx.o faidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile.o hfile.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile_net.o hfile_net.c echo '#define HTS_VERSION "1.7"' > version.h gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts.o hts.c hts.c: In function ‘hts_idx_init’: hts.c:1366:59: warning: overflow in conversion from ‘uint32_t’ {aka ‘unsigned int’} to ‘int’ changes value from ‘idx->z.last_bin = 4294967295’ to ‘-1’ [-Woverflow] 1366 | idx->z.save_bin = idx->z.save_tid = idx->z.last_tid = idx->z.last_bin = 0xffffffffu; | ^~~ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts_os.o hts_os.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o md5.o md5.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o multipart.o multipart.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o probaln.o probaln.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o realn.o realn.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o regidx.o regidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o sam.o sam.c sam.c: In function ‘bam_hdr_write’: sam.c:233:5: warning: ‘strncpy’ output truncated before terminating nul copying 4 bytes from a string of the same length [-Wstringop-truncation] 233 | strncpy(buf, "BAM\1", 4); | ^ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o synced_bcf_reader.o synced_bcf_reader.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf_sweep.o vcf_sweep.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o tbx.o tbx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o textutils.o textutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o thread_pool.o thread_pool.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf.o vcf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcfutils.o vcfutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_codecs.o cram/cram_codecs.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_decode.o cram/cram_decode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_encode.o cram/cram_encode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_external.o cram/cram_external.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_index.o cram/cram_index.c In file included from ./textutils_internal.h:32, from ./hts_internal.h:31, from cram/cram_index.c:65: In function ‘kputsn’, inlined from ‘kputs’ at ./htslib/kstring.h:156:9, inlined from ‘cram_index_build’ at cram/cram_index.c:571:9: ./htslib/kstring.h:150:20: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 150 | s->s[s->l] = 0; | ~~~~~~~~~~~^~~ In file included from /usr/include/string.h:548, from cram/cram_index.c:57: In function ‘memcpy’, inlined from ‘kputsn’ at ./htslib/kstring.h:148:2, inlined from ‘kputs’ at ./htslib/kstring.h:156:9, inlined from ‘cram_index_build’ at cram/cram_index.c:571:9: /usr/include/bits/string_fortified.h:29:10: warning: ‘memcpy’ specified bound 18446744073709551614 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_io.o cram/cram_io.c cram/cram_io.c: In function ‘cram_populate_ref’: cram/cram_io.c:2071:9: warning: ‘strncpy’ specified bound 4096 equals destination size [-Wstringop-truncation] 2071 | strncpy(path, path2, PATH_MAX); | ^ cram/cram_io.c:2178:34: warning: ‘.tmp_’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 2178 | sprintf(path_tmp, "%s.tmp_%d_%u_%u", path, pid, thrid, t); | ^~~~~ In file included from /usr/include/stdio.h:964, from cram/cram_io.c:49: In function ‘sprintf’, inlined from ‘cram_populate_ref’ at cram/cram_io.c:2178:6: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 11 and 4134 bytes into a destination of size 4096 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ cram/cram_io.c: In function ‘cram_write_SAM_hdr’: cram/cram_io.c:3677:13: warning: ‘strncpy’ specified bound 4096 equals destination size [-Wstringop-truncation] 3677 | strncpy(out, in, PATH_MAX); | ^ cram/cram_io.c: In function ‘cram_dopen’: cram/cram_io.c:4055:9: warning: ‘strncpy’ specified bound 20 equals destination size [-Wstringop-truncation] 4055 | strncpy(def->file_id, filename, 20); | ^ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_samtools.o cram/cram_samtools.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_stats.o cram/cram_stats.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/files.o cram/files.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/mFILE.o cram/mFILE.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/open_trace_file.o cram/open_trace_file.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/pooled_alloc.o cram/pooled_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/rANS_static.o cram/rANS_static.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/sam_header.o cram/sam_header.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/string_alloc.o cram/string_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile_libcurl.o hfile_libcurl.c hfile_libcurl.c: In function ‘libcurl_open’: hfile_libcurl.c:1187:9: warning: ‘CURLINFO_CONTENT_LENGTH_DOWNLOAD’ is deprecated: since 7.55.0. Use CURLINFO_CONTENT_LENGTH_DOWNLOAD_T [-Wdeprecated-declarations] 1187 | if (curl_easy_getinfo(fp->easy, CURLINFO_CONTENT_LENGTH_DOWNLOAD, | ^~ In file included from hfile_libcurl.c:45: /usr/include/curl/curl.h:2883:3: note: declared here 2883 | CURLINFO_CONTENT_LENGTH_DOWNLOAD | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ar -rc libhts.a kfunc.o knetfile.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o hfile.o hfile_net.o hts.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/files.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/sam_header.o cram/string_alloc.o hfile_libcurl.o ranlib libhts.a gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kfunc.pico kfunc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o knetfile.pico knetfile.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o kstring.pico kstring.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bcf_sr_sort.pico bcf_sr_sort.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o bgzf.pico bgzf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o errmod.pico errmod.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o faidx.pico faidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile.pico hfile.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile_net.pico hfile_net.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts.pico hts.c hts.c: In function ‘hts_idx_init’: hts.c:1366:59: warning: overflow in conversion from ‘uint32_t’ {aka ‘unsigned int’} to ‘int’ changes value from ‘idx->z.last_bin = 4294967295’ to ‘-1’ [-Woverflow] 1366 | idx->z.save_bin = idx->z.save_tid = idx->z.last_tid = idx->z.last_bin = 0xffffffffu; | ^~~ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hts_os.pico hts_os.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o md5.pico md5.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o multipart.pico multipart.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o probaln.pico probaln.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o realn.pico realn.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o regidx.pico regidx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o sam.pico sam.c sam.c: In function ‘bam_hdr_write’: sam.c:233:5: warning: ‘strncpy’ output truncated before terminating nul copying 4 bytes from a string of the same length [-Wstringop-truncation] 233 | strncpy(buf, "BAM\1", 4); | ^ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o synced_bcf_reader.pico synced_bcf_reader.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf_sweep.pico vcf_sweep.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o tbx.pico tbx.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o textutils.pico textutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o thread_pool.pico thread_pool.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcf.pico vcf.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o vcfutils.pico vcfutils.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_codecs.pico cram/cram_codecs.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_decode.pico cram/cram_decode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_encode.pico cram/cram_encode.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_external.pico cram/cram_external.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_index.pico cram/cram_index.c In file included from ./textutils_internal.h:32, from ./hts_internal.h:31, from cram/cram_index.c:65: In function ‘kputsn’, inlined from ‘kputs’ at ./htslib/kstring.h:156:9, inlined from ‘cram_index_build’ at cram/cram_index.c:571:9: ./htslib/kstring.h:150:20: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 150 | s->s[s->l] = 0; | ~~~~~~~~~~~^~~ In file included from /usr/include/string.h:548, from cram/cram_index.c:57: In function ‘memcpy’, inlined from ‘kputsn’ at ./htslib/kstring.h:148:2, inlined from ‘kputs’ at ./htslib/kstring.h:156:9, inlined from ‘cram_index_build’ at cram/cram_index.c:571:9: /usr/include/bits/string_fortified.h:29:10: warning: ‘memcpy’ specified bound 18446744073709551614 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 | __glibc_objsize0 (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_io.pico cram/cram_io.c cram/cram_io.c: In function ‘cram_populate_ref’: cram/cram_io.c:2071:9: warning: ‘strncpy’ specified bound 4096 equals destination size [-Wstringop-truncation] 2071 | strncpy(path, path2, PATH_MAX); | ^ cram/cram_io.c:2178:34: warning: ‘.tmp_’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] 2178 | sprintf(path_tmp, "%s.tmp_%d_%u_%u", path, pid, thrid, t); | ^~~~~ In file included from /usr/include/stdio.h:964, from cram/cram_io.c:49: In function ‘sprintf’, inlined from ‘cram_populate_ref’ at cram/cram_io.c:2178:6: /usr/include/bits/stdio2.h:30:10: note: ‘__sprintf_chk’ output between 11 and 4134 bytes into a destination of size 4096 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ cram/cram_io.c: In function ‘cram_write_SAM_hdr’: cram/cram_io.c:3677:13: warning: ‘strncpy’ specified bound 4096 equals destination size [-Wstringop-truncation] 3677 | strncpy(out, in, PATH_MAX); | ^ cram/cram_io.c: In function ‘cram_dopen’: cram/cram_io.c:4055:9: warning: ‘strncpy’ specified bound 20 equals destination size [-Wstringop-truncation] 4055 | strncpy(def->file_id, filename, 20); | ^ gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_samtools.pico cram/cram_samtools.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/cram_stats.pico cram/cram_stats.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/files.pico cram/files.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/mFILE.pico cram/mFILE.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/open_trace_file.pico cram/open_trace_file.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/pooled_alloc.pico cram/pooled_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/rANS_static.pico cram/rANS_static.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/sam_header.pico cram/sam_header.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o cram/string_alloc.pico cram/string_alloc.c gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fpic -I. -I/usr/local/include -D_FILE_OFFSET_BITS=64 -c -o hfile_libcurl.pico hfile_libcurl.c hfile_libcurl.c: In function ‘libcurl_open’: hfile_libcurl.c:1187:9: warning: ‘CURLINFO_CONTENT_LENGTH_DOWNLOAD’ is deprecated: since 7.55.0. Use CURLINFO_CONTENT_LENGTH_DOWNLOAD_T [-Wdeprecated-declarations] 1187 | if (curl_easy_getinfo(fp->easy, CURLINFO_CONTENT_LENGTH_DOWNLOAD, | ^~ In file included from hfile_libcurl.c:45: /usr/include/curl/curl.h:2883:3: note: declared here 2883 | CURLINFO_CONTENT_LENGTH_DOWNLOAD | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -shared -Wl,-soname,libhts.so.2 -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o libhts.so kfunc.pico knetfile.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico hfile.pico hfile_net.pico hts.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico sam.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_samtools.pico cram/cram_stats.pico cram/files.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/rANS_static.pico cram/sam_header.pico cram/string_alloc.pico hfile_libcurl.pico -lz -lm -lbz2 -llzma -lcurl -lpthread In function ‘kputsn’, inlined from ‘kputs’ at htslib/kstring.h:156:9, inlined from ‘cram_index_build’ at cram/cram_index.c:571:9: htslib/kstring.h:150:20: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 150 | s->s[s->l] = 0; | ^ In function ‘memcpy’, inlined from ‘kputsn’ at htslib/kstring.h:148:2, inlined from ‘kputs’ at htslib/kstring.h:156:9, inlined from ‘cram_index_build’ at cram/cram_index.c:571:9: /usr/include/bits/string_fortified.h:29:10: warning: ‘__builtin_memcpy’ specified bound 18446744073709551614 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ^ ln -sf libhts.so libhts.so.2 make[1]: Leaving directory '/builddir/build/BUILD/Rhtslib/Rhtslib/src/htslib-1.7' mkdir -p "/builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.x86_64/usr/lib64/R/library/Rhtslib/include/htslib" cd "htslib-1.7/htslib" && cp * "/builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.x86_64/usr/lib64/R/library/Rhtslib/include/htslib" && cd .. && cp textutils_internal.h hts_internal.h "/builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.x86_64/usr/lib64/R/library/Rhtslib/include" gcc -I"/usr/include/R" -DNDEBUG -D_FILE_OFFSET_BITS=64 -Ihtslib-1.7 -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -c R_init_Rhtslib.c -o R_init_Rhtslib.o mkdir -p "/builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.x86_64/usr/lib64/R/library/Rhtslib/usrlib" cd "htslib-1.7" && cp libhts.so libhts.a "/builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.x86_64/usr/lib64/R/library/Rhtslib/usrlib" cd "/builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.x86_64/usr/lib64/R/library/Rhtslib/usrlib" && ln -s libhts.so libhts.so.2 gcc -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -o Rhtslib.so R_init_Rhtslib.o /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.x86_64/usr/lib64/R/library/Rhtslib/usrlib/libhts.a -lcurl -L/usr/lib64/R/lib -lR In function ‘kputsn’, inlined from ‘kputs’ at htslib-1.7/./htslib/kstring.h:156:9, inlined from ‘cram_index_build’ at htslib-1.7/cram/cram_index.c:571:9: htslib-1.7/./htslib/kstring.h:150:20: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 150 | s->s[s->l] = 0; | ^ In function ‘memcpy’, inlined from ‘kputsn’ at htslib-1.7/./htslib/kstring.h:148:2, inlined from ‘kputs’ at htslib-1.7/./htslib/kstring.h:156:9, inlined from ‘cram_index_build’ at htslib-1.7/cram/cram_index.c:571:9: /usr/include/bits/string_fortified.h:29:10: warning: ‘__builtin_memcpy’ specified bound 18446744073709551614 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=] 29 | return __builtin___memcpy_chk (__dest, __src, __len, | ^ mkdir -p "/builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.x86_64/usr/lib64/R/library/Rhtslib/testdata/tabix" cd "htslib-1.7/test" && (cp *.sam *.bam *.vcf *.bcf *.cram *.fa *.fa.fai *.gff *.bed "/builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.x86_64/usr/lib64/R/library/Rhtslib/testdata" 2>/dev/null || true) && cd tabix && (cp *.sam *.bam *.vcf *.bcf *.cram *.fa *.fa.fai *.gff *.bed "/builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.x86_64/usr/lib64/R/library/Rhtslib/testdata/tabix" 2>/dev/null || true) installing to /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.x86_64/usr/lib64/R/library/Rhtslib/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘Rhtslib’ finding HTML links ... done Rhtslib-package html pkgconfig html ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (Rhtslib) + test -d Rhtslib/src + cd Rhtslib/src + rm -f R_init_Rhtslib.o Rhtslib.so + rm -f /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.x86_64/usr/lib64/R/library/R.css + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.28.0-4.fc40 --unique-debug-suffix -1.28.0-4.fc40.x86_64 --unique-debug-src-base R-Rhtslib-1.28.0-4.fc40.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/Rhtslib find-debuginfo: starting Extracting debug info from 2 files DWARF-compressing 2 files sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-Rhtslib-1.28.0-4.fc40.x86_64 3112 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 + /usr/lib/rpm/redhat/brp-python-hardlink Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.DGqLRa + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cforce-frame-pointers=yes -Clink-arg=-Wl,-z,relro -Clink-arg=-Wl,-z,now -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd Rhtslib + RPM_EC=0 ++ jobs -p + exit 0 Processing files: R-Rhtslib-1.28.0-4.fc40.x86_64 Provides: R(Rhtslib) = 1.28.0 R-Rhtslib = 1.28.0-4.fc40 R-Rhtslib(x86-64) = 1.28.0-4.fc40 libhts.so.2()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: R(ABI) = 4.3 R-core libR.so()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.15)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.2)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libcurl.so.4()(64bit) liblzma.so.5()(64bit) liblzma.so.5(XZ_5.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libz.so.1()(64bit) libz.so.1(ZLIB_1.2.0)(64bit) rtld(GNU_HASH) Suggests: R(BiocStyle) R(knitr) R(rmarkdown) Processing files: R-Rhtslib-devel-1.28.0-4.fc40.x86_64 Provides: R-Rhtslib-devel = 1.28.0-4.fc40 R-Rhtslib-devel(x86-64) = 1.28.0-4.fc40 R-Rhtslib-static = 1.28.0-4.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-Rhtslib-debugsource-1.28.0-4.fc40.x86_64 Provides: R-Rhtslib-debugsource = 1.28.0-4.fc40 R-Rhtslib-debugsource(x86-64) = 1.28.0-4.fc40 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-Rhtslib-debuginfo-1.28.0-4.fc40.x86_64 Provides: R-Rhtslib-debuginfo = 1.28.0-4.fc40 R-Rhtslib-debuginfo(x86-64) = 1.28.0-4.fc40 debuginfo(build-id) = 4e740ccb79d2c5fae98525a8fa0b1b83ffee8c41 debuginfo(build-id) = adcb1f5dd1403bd11bd933baefd2b155ba882ff7 libhts.so-1.28.0-4.fc40.x86_64.debug()(64bit) Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-Rhtslib-debugsource(x86-64) = 1.28.0-4.fc40 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.x86_64 Wrote: /builddir/build/RPMS/R-Rhtslib-debuginfo-1.28.0-4.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/R-Rhtslib-debugsource-1.28.0-4.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/R-Rhtslib-1.28.0-4.fc40.x86_64.rpm Wrote: /builddir/build/RPMS/R-Rhtslib-devel-1.28.0-4.fc40.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.S2AXCO + umask 022 + cd /builddir/build/BUILD + cd Rhtslib + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-Rhtslib-1.28.0-4.fc40.x86_64 + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.b67hBe + umask 022 + cd /builddir/build/BUILD + rm -rf /builddir/build/BUILD/Rhtslib-SPECPARTS + rm -rf Rhtslib Rhtslib.gemspec + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: %patchN is deprecated (2 usages found), use %patch N (or %patch -P N) Finish: rpmbuild R-Rhtslib-1.28.0-4.fc40.src.rpm Finish: build phase for R-Rhtslib-1.28.0-4.fc40.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-x86_64-1695197193.315340/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-x86_64-1695197193.315340/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-x86_64-1695197193.315340/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/R-Rhtslib-1.28.0-4.fc40.src.rpm) Config(child) 1 minutes 20 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-Rhtslib", "epoch": null, "version": "1.28.0", "release": "4.fc40", "arch": "src" }, { "name": "R-Rhtslib-devel", "epoch": null, "version": "1.28.0", "release": "4.fc40", "arch": "x86_64" }, { "name": "R-Rhtslib", "epoch": null, "version": "1.28.0", "release": "4.fc40", "arch": "x86_64" }, { "name": "R-Rhtslib-debuginfo", "epoch": null, "version": "1.28.0", "release": "4.fc40", "arch": "x86_64" }, { "name": "R-Rhtslib-debugsource", "epoch": null, "version": "1.28.0", "release": "4.fc40", "arch": "x86_64" } ] } RPMResults finished