Mock Version: 1.2.18 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/bedops.spec'], user='mockbuild'logger=timeout=0gid=135shell=Falseuid=1001chrootPath='/var/lib/mock/epel-7-x86_64-mockbuilder-2743/root'printOutput=Falseenv={'LANG': 'en_US.UTF-8', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'HOME': '/builddir', 'TERM': 'vt100', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOSTNAME': 'mock', 'PS1': ' \\s-\\v\\$ '}) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/bedops.spec'] with env {'LANG': 'en_US.UTF-8', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'HOME': '/builddir', 'TERM': 'vt100', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOSTNAME': 'mock', 'PS1': ' \\s-\\v\\$ '} and shell False warning: Could not canonicalize hostname: copr-builder-501295510.novalocal Building target platforms: x86_64 Building for target x86_64 Wrote: /builddir/build/SRPMS/bedops-2.4.19-1.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/bedops.spec'], user='mockbuild'logger=timeout=0gid=135shell=Falseuid=1001private_network=TruechrootPath='/var/lib/mock/epel-7-x86_64-mockbuilder-2743/root'printOutput=Falseenv={'LANG': 'en_US.UTF-8', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'HOME': '/builddir', 'TERM': 'vt100', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOSTNAME': 'mock', 'PS1': ' \\s-\\v\\$ '}) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps /builddir/build/SPECS/bedops.spec'] with env {'LANG': 'en_US.UTF-8', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'HOME': '/builddir', 'TERM': 'vt100', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOSTNAME': 'mock', 'PS1': ' \\s-\\v\\$ '} and shell False Building target platforms: x86_64 Building for target x86_64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.8arZF5 + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf bedops-2.4.19 + /usr/bin/gzip -dc /builddir/build/SOURCES/bedops-2.4.19.tar.gz + /usr/bin/tar -xf - + STATUS=0 + '[' 0 -ne 0 ']' + cd bedops-2.4.19 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.QIvTPF + umask 022 + cd /builddir/build/BUILD + cd bedops-2.4.19 + make -j2 make -f system.mk/Makefile.linux make[1]: Entering directory `/builddir/build/BUILD/bedops-2.4.19' bzcat third-party/jansson-2.6.tar.bz2 | tar -x -C third-party bzcat third-party/bzip2-1.0.6.tar.bz2 | tar -x -C third-party cd third-party/jansson-2.6 && ./configure --prefix=/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6 && make && make install && cd /builddir/build/BUILD/bedops-2.4.19 && rm -f jansson && ln -sf jansson-2.6 third-party/jansson checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... cd third-party/bzip2-1.0.6 && make libbz2.a && cd /builddir/build/BUILD/bedops-2.4.19 && rm -f bzip2 && ln -sf bzip2-1.0.6 third-party/bzip2 make[2]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/bzip2-1.0.6' If compilation produces errors, or a large number of warnings, please read README.COMPILATION.PROBLEMS -- you might be able to adjust the flags in this Makefile to improve matters. Also in README.COMPILATION.PROBLEMS are some hints that may help if your build produces an executable which is unable to correctly handle so-called 'large files' -- files of size 2GB or more. gcc -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c blocksort.c In function 'mainSort': blocksort.c:347:6: warning: inlining failed in call to 'mainGtU.part.0': call is unlikely and code size would grow [-Winline] Bool mainGtU ( UInt32 i1, ^ cc1: warning: called from here [-Winline] blocksort.c:347:6: warning: inlining failed in call to 'mainGtU.part.0': call is unlikely and code size would grow [-Winline] Bool mainGtU ( UInt32 i1, ^ cc1: warning: called from here [-Winline] blocksort.c:347:6: warning: inlining failed in call to 'mainGtU.part.0': call is unlikely and code size would grow [-Winline] Bool mainGtU ( UInt32 i1, ^ cc1: warning: called from here [-Winline] gcc -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c huffman.c gcc -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c crctable.c gcc -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c randtable.c gcc -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c compress.c yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... gcc -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c decompress.c yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking endian.h usability... yes checking endian.h presence... yes checking for endian.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for unistd.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for sys/stat.h... (cached) yes checking sys/time.h usability... gcc -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -c bzlib.c yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for sys/types.h... (cached) yes checking for int32_t... yes checking for uint32_t... yes checking for long long int... yes checking for inline... inline checking for close... yes checking for getpid... yes checking for gettimeofday... yes checking for localeconv... yes rm -f libbz2.a ar cq libbz2.a blocksort.o huffman.o crctable.o randtable.o compress.o decompress.o bzlib.o ranlib libbz2.a make[2]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/bzip2-1.0.6' bzcat third-party/zlib-1.2.7.tar.bz2 | tar -x -C third-party checking for open... yes checking for read... yes checking for sched_yield... cd third-party/zlib-1.2.7 && ./configure --static && make && cd /builddir/build/BUILD/bedops-2.4.19 && rm -f zlib && ln -sf zlib-1.2.7 third-party/zlib yes Building static library libz.a version 1.2.7 with gcc. checking for strtoll... Checking for off64_t... Yes. Checking for fseeko... Yes. Checking for strerror... Yes. yes checking for gcc __sync builtins... Checking for unistd.h... Yes. Checking for stdarg.h... Yes. yes checking for gcc __atomic builtins... no Checking whether to use vs[n]printf() or s[n]printf()... using vs[n]printf(). configure: creating ./config.status Checking for vsnprintf() in stdio.h... Yes. Checking for return value of vsnprintf()... Yes. Checking for attribute(visibility) support... Yes. Looking for a four-byte integer type... Found. make[2]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/zlib-1.2.7' gcc -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I. -c -o example.o test/example.c gcc -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o adler32.o adler32.c gcc -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o crc32.o crc32.c config.status: creating jansson.pc config.status: creating Makefile config.status: creating doc/Makefile config.status: creating src/Makefile config.status: creating src/jansson_config.h gcc -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o deflate.o deflate.c config.status: creating test/Makefile config.status: creating test/bin/Makefile config.status: creating test/suites/Makefile config.status: creating test/suites/api/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands make[2]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6' make all-recursive make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6' Making all in doc make[4]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/doc' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/doc' Making all in src make[4]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/src' /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT dump.lo -MD -MP -MF .deps/dump.Tpo -c -o dump.lo dump.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT dump.lo -MD -MP -MF .deps/dump.Tpo -c dump.c -fPIC -DPIC -o .libs/dump.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT dump.lo -MD -MP -MF .deps/dump.Tpo -c dump.c -o dump.o >/dev/null 2>&1 gcc -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o infback.o infback.c mv -f .deps/dump.Tpo .deps/dump.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT error.lo -MD -MP -MF .deps/error.Tpo -c -o error.lo error.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT error.lo -MD -MP -MF .deps/error.Tpo -c error.c -fPIC -DPIC -o .libs/error.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT error.lo -MD -MP -MF .deps/error.Tpo -c error.c -o error.o >/dev/null 2>&1 mv -f .deps/error.Tpo .deps/error.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT hashtable.lo -MD -MP -MF .deps/hashtable.Tpo -c -o hashtable.lo hashtable.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT hashtable.lo -MD -MP -MF .deps/hashtable.Tpo -c hashtable.c -fPIC -DPIC -o .libs/hashtable.o gcc -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o inffast.o inffast.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT hashtable.lo -MD -MP -MF .deps/hashtable.Tpo -c hashtable.c -o hashtable.o >/dev/null 2>&1 gcc -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o inflate.o inflate.c mv -f .deps/hashtable.Tpo .deps/hashtable.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT hashtable_seed.lo -MD -MP -MF .deps/hashtable_seed.Tpo -c -o hashtable_seed.lo hashtable_seed.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT hashtable_seed.lo -MD -MP -MF .deps/hashtable_seed.Tpo -c hashtable_seed.c -fPIC -DPIC -o .libs/hashtable_seed.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT hashtable_seed.lo -MD -MP -MF .deps/hashtable_seed.Tpo -c hashtable_seed.c -o hashtable_seed.o >/dev/null 2>&1 mv -f .deps/hashtable_seed.Tpo .deps/hashtable_seed.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT load.lo -MD -MP -MF .deps/load.Tpo -c -o load.lo load.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT load.lo -MD -MP -MF .deps/load.Tpo -c load.c -fPIC -DPIC -o .libs/load.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT load.lo -MD -MP -MF .deps/load.Tpo -c load.c -o load.o >/dev/null 2>&1 gcc -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o inftrees.o inftrees.c gcc -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o trees.o trees.c mv -f .deps/load.Tpo .deps/load.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT memory.lo -MD -MP -MF .deps/memory.Tpo -c -o memory.lo memory.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT memory.lo -MD -MP -MF .deps/memory.Tpo -c memory.c -fPIC -DPIC -o .libs/memory.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT memory.lo -MD -MP -MF .deps/memory.Tpo -c memory.c -o memory.o >/dev/null 2>&1 mv -f .deps/memory.Tpo .deps/memory.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT pack_unpack.lo -MD -MP -MF .deps/pack_unpack.Tpo -c -o pack_unpack.lo pack_unpack.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT pack_unpack.lo -MD -MP -MF .deps/pack_unpack.Tpo -c pack_unpack.c -fPIC -DPIC -o .libs/pack_unpack.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT pack_unpack.lo -MD -MP -MF .deps/pack_unpack.Tpo -c pack_unpack.c -o pack_unpack.o >/dev/null 2>&1 gcc -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o zutil.o zutil.c gcc -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o compress.o compress.c gcc -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o uncompr.o uncompr.c gcc -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o gzclose.o gzclose.c gcc -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o gzlib.o gzlib.c mv -f .deps/pack_unpack.Tpo .deps/pack_unpack.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT strbuffer.lo -MD -MP -MF .deps/strbuffer.Tpo -c -o strbuffer.lo strbuffer.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT strbuffer.lo -MD -MP -MF .deps/strbuffer.Tpo -c strbuffer.c -fPIC -DPIC -o .libs/strbuffer.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT strbuffer.lo -MD -MP -MF .deps/strbuffer.Tpo -c strbuffer.c -o strbuffer.o >/dev/null 2>&1 gcc -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o gzread.o gzread.c mv -f .deps/strbuffer.Tpo .deps/strbuffer.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT strconv.lo -MD -MP -MF .deps/strconv.Tpo -c -o strconv.lo strconv.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT strconv.lo -MD -MP -MF .deps/strconv.Tpo -c strconv.c -fPIC -DPIC -o .libs/strconv.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT strconv.lo -MD -MP -MF .deps/strconv.Tpo -c strconv.c -o strconv.o >/dev/null 2>&1 gcc -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -c -o gzwrite.o gzwrite.c mv -f .deps/strconv.Tpo .deps/strconv.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT utf.lo -MD -MP -MF .deps/utf.Tpo -c -o utf.lo utf.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT utf.lo -MD -MP -MF .deps/utf.Tpo -c utf.c -fPIC -DPIC -o .libs/utf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT utf.lo -MD -MP -MF .deps/utf.Tpo -c utf.c -o utf.o >/dev/null 2>&1 mv -f .deps/utf.Tpo .deps/utf.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT value.lo -MD -MP -MF .deps/value.Tpo -c -o value.lo value.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT value.lo -MD -MP -MF .deps/value.Tpo -c value.c -fPIC -DPIC -o .libs/value.o gcc -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I. -c -o minigzip.o test/minigzip.c gcc -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I. -D_FILE_OFFSET_BITS=64 -c -o example64.o test/example.c gcc -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -I. -D_FILE_OFFSET_BITS=64 -c -o minigzip64.o test/minigzip.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wall -Wextra -Wdeclaration-after-statement -g -O2 -MT value.lo -MD -MP -MF .deps/value.Tpo -c value.c -o value.o >/dev/null 2>&1 ar rc libz.a adler32.o crc32.o deflate.o infback.o inffast.o inflate.o inftrees.o trees.o zutil.o compress.o uncompr.o gzclose.o gzlib.o gzread.o gzwrite.o gcc -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o example example.o -L. libz.a gcc -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o minigzip minigzip.o -L. libz.a gcc -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o example64 example64.o -L. libz.a gcc -O3 -D_LARGEFILE64_SOURCE=1 -DHAVE_HIDDEN -o minigzip64 minigzip64.o -L. libz.a make[2]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/zlib-1.2.7' mv -f .deps/value.Tpo .deps/value.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -Wall -Wextra -Wdeclaration-after-statement -g -O2 -no-undefined -export-symbols-regex '^json_' -version-info 10:0:6 -o libjansson.la -rpath /builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/lib dump.lo error.lo hashtable.lo hashtable_seed.lo load.lo memory.lo pack_unpack.lo strbuffer.lo strconv.lo utf.lo value.lo libtool: link: /usr/bin/nm -B .libs/dump.o .libs/error.o .libs/hashtable.o .libs/hashtable_seed.o .libs/load.o .libs/memory.o .libs/pack_unpack.o .libs/strbuffer.o .libs/strconv.o .libs/utf.o .libs/value.o | sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' | /usr/bin/sed 's/.* //' | sort | uniq > .libs/libjansson.exp libtool: link: /usr/bin/grep -E -e "^json_" ".libs/libjansson.exp" > ".libs/libjansson.expT" libtool: link: mv -f ".libs/libjansson.expT" ".libs/libjansson.exp" libtool: link: echo "{ global:" > .libs/libjansson.ver libtool: link: cat .libs/libjansson.exp | sed -e "s/\(.*\)/\1;/" >> .libs/libjansson.ver libtool: link: echo "local: *; };" >> .libs/libjansson.ver libtool: link: gcc -shared -fPIC -DPIC .libs/dump.o .libs/error.o .libs/hashtable.o .libs/hashtable_seed.o .libs/load.o .libs/memory.o .libs/pack_unpack.o .libs/strbuffer.o .libs/strconv.o .libs/utf.o .libs/value.o -O2 -Wl,-soname -Wl,libjansson.so.4 -Wl,-version-script -Wl,.libs/libjansson.ver -o .libs/libjansson.so.4.6.0 libtool: link: (cd ".libs" && rm -f "libjansson.so.4" && ln -s "libjansson.so.4.6.0" "libjansson.so.4") libtool: link: (cd ".libs" && rm -f "libjansson.so" && ln -s "libjansson.so.4.6.0" "libjansson.so") libtool: link: ar cru .libs/libjansson.a dump.o error.o hashtable.o hashtable_seed.o load.o memory.o pack_unpack.o strbuffer.o strconv.o utf.o value.o libtool: link: ranlib .libs/libjansson.a libtool: link: ( cd ".libs" && rm -f "libjansson.la" && ln -s "../libjansson.la" "libjansson.la" ) make[4]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/src' Making all in test make[4]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test' Making all in bin make[5]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test/bin' make[5]: Nothing to be done for `all'. make[5]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test/bin' Making all in suites make[5]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test/suites' Making all in api make[6]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test/suites/api' make[6]: Nothing to be done for `all'. make[6]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test/suites/api' make[6]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test/suites' make[6]: Nothing to be done for `all-am'. make[6]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test/suites' make[5]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test/suites' make[5]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test' make[5]: Nothing to be done for `all-am'. make[5]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test' make[4]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test' make[4]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6' make[4]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6' make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6' make[2]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6' make[2]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6' Making install in doc make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/doc' make[4]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/doc' make[4]: Nothing to be done for `install-exec-am'. make[4]: Nothing to be done for `install-data-am'. make[4]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/doc' make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/doc' Making install in src make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/src' make[4]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/src' /usr/bin/mkdir -p '/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/include' /usr/bin/mkdir -p '/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/lib' /bin/sh ../libtool --mode=install /usr/bin/install -c libjansson.la '/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/lib' /usr/bin/install -c -m 644 jansson.h jansson_config.h '/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/include' libtool: install: /usr/bin/install -c .libs/libjansson.so.4.6.0 /builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/lib/libjansson.so.4.6.0 libtool: install: (cd /builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/lib && { ln -s -f libjansson.so.4.6.0 libjansson.so.4 || { rm -f libjansson.so.4 && ln -s libjansson.so.4.6.0 libjansson.so.4; }; }) libtool: install: (cd /builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/lib && { ln -s -f libjansson.so.4.6.0 libjansson.so || { rm -f libjansson.so && ln -s libjansson.so.4.6.0 libjansson.so; }; }) libtool: install: /usr/bin/install -c .libs/libjansson.lai /builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/lib/libjansson.la libtool: install: /usr/bin/install -c .libs/libjansson.a /builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/lib/libjansson.a libtool: install: chmod 644 /builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/lib/libjansson.a libtool: install: ranlib /builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/lib/libjansson.a libtool: finish: PATH="/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin:/builddir/.local/bin:/builddir/bin:/sbin" ldconfig -n /builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/lib ---------------------------------------------------------------------- Libraries have been installed in: /builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[4]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/src' make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/src' Making install in test make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test' Making install in bin make[4]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test/bin' make[5]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test/bin' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test/bin' make[4]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test/bin' Making install in suites make[4]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test/suites' Making install in api make[5]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test/suites/api' make[6]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test/suites/api' make[6]: Nothing to be done for `install-exec-am'. make[6]: Nothing to be done for `install-data-am'. make[6]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test/suites/api' make[5]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test/suites/api' make[5]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test/suites' make[6]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test/suites' make[6]: Nothing to be done for `install-exec-am'. make[6]: Nothing to be done for `install-data-am'. make[6]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test/suites' make[5]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test/suites' make[4]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test/suites' make[4]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test' make[5]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test' make[5]: Nothing to be done for `install-exec-am'. make[5]: Nothing to be done for `install-data-am'. make[5]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test' make[4]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test' make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/test' make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6' make[4]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6' make[4]: Nothing to be done for `install-exec-am'. /usr/bin/mkdir -p '/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/lib/pkgconfig' /usr/bin/install -c -m 644 jansson.pc '/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6/lib/pkgconfig' make[4]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6' make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6' make[2]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/third-party/jansson-2.6' make build -f /builddir/build/BUILD/bedops-2.4.19/system.mk/Makefile.linux make[2]: Entering directory `/builddir/build/BUILD/bedops-2.4.19' make -C applications/bed/bedmap/src -f Makefile build make -C applications/bed/sort-bed/src -f Makefile build make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src' mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects/NaN.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/zlib make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src' mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 SortDetails.cpp -o objects/SortDetails.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/zlib mkdir -p ../bin && g++ -o ../bin/bedmap -static -s -Wall -pedantic -O3 -std=c++11 objects/NaN.o objects/starchConstants.o objects/starchFileHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/unstarchHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o -L/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/jansson/lib -L/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/bzip2 -L/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/zlib -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/zlib /builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/jansson/lib/libjansson.a /builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/bzip2/libbz2.a /builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src/../../../../third-party/zlib/libz.a Bedmap.cpp mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 Sort.cpp -o objects/Sort.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -Wextra -pedantic -ansi -O3 -std=c++11 CheckSort.cpp -o objects/CheckSort.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/zlib mkdir -p ../bin && g++ -o ../bin/sort-bed -static -s -Wall -Wextra -pedantic -ansi -O3 -std=c++11 -L/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/jansson/lib -L/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/bzip2 -L/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/zlib -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/zlib objects/starchConstants.o objects/starchFileHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/unstarchHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o objects/SortDetails.o objects/Sort.o objects/CheckSort.o /builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/jansson/lib/libjansson.a /builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/bzip2/libbz2.a /builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src/../../../../third-party/zlib/libz.a make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src' make -C applications/bed/bedops/src -f Makefile build make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src' mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects/NaN.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/zlib mkdir -p ../bin && g++ -o ../bin/bedops -static -s -Wall -pedantic -O3 -std=c++11 objects/NaN.o objects/starchConstants.o objects/starchFileHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/unstarchHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o -L/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/jansson/lib -L/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/bzip2 -L/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/zlib -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/zlib /builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/jansson/lib/libjansson.a /builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/bzip2/libbz2.a /builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src/../../../../third-party/zlib/libz.a Bedops.cpp make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src' make -C applications/bed/closestfeats/src -f Makefile build make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src' mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects/NaN.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/zlib mkdir -p ../bin && g++ -o ../bin/closest-features -static -s -Wall -pedantic -O3 -std=c++11 objects/NaN.o objects/starchConstants.o objects/starchFileHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/unstarchHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o -L/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/jansson/lib -L/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/bzip2 -L/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/zlib -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/zlib /builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/jansson/lib/libjansson.a /builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/bzip2/libbz2.a /builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src/../../../../third-party/zlib/libz.a ClosestFeature.cpp make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src' make -C applications/bed/bedextract/src -f Makefile build make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src' mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/measurement/NaN.cpp -o objects/NaN.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/zlib mkdir -p objects && g++ -c -Wall -pedantic -O3 -std=c++11 ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/zlib mkdir -p ../bin && g++ -o ../bin/bedextract -static -s -Wall -pedantic -O3 -std=c++11 objects/NaN.o objects/starchConstants.o objects/starchFileHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/unstarchHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o -L/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/jansson/lib -L/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/bzip2 -L/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/zlib -iquote../../../../interfaces/general-headers -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/zlib /builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/jansson/lib/libjansson.a /builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/bzip2/libbz2.a /builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src/../../../../third-party/zlib/libz.a ExtractRows.cpp make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src' make -C applications/bed/starch/src -f Makefile build make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src' mkdir -p objects g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -static -s -c ../../../../interfaces/src/data/starch/starchConstants.c -o objects/starchConstants.o -iquote../../../../interfaces/general-headers -iquote../../../.. -iquote../../../../third-party -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/zlib mkdir -p objects g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -static -s -c ../../../../interfaces/src/data/starch/unstarchHelpers.c -o objects/unstarchHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../.. -iquote../../../../third-party -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/zlib mkdir -p objects g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -static -s -c ../../../../interfaces/src/data/starch/starchHelpers.c -o objects/starchHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../.. -iquote../../../../third-party -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/zlib mkdir -p objects g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -static -s -c ../../../../interfaces/src/data/starch/starchMetadataHelpers.c -o objects/starchMetadataHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../.. -iquote../../../../third-party -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/zlib mkdir -p objects g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -static -s -c ../../../../interfaces/src/data/starch/starchFileHelpers.c -o objects/starchFileHelpers.o -iquote../../../../interfaces/general-headers -iquote../../../.. -iquote../../../../third-party -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/zlib mkdir -p objects g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -static -s -c ../../../../interfaces/src/data/starch/starchSha1Digest.c -o objects/starchSha1Digest.o -iquote../../../../interfaces/general-headers -iquote../../../.. -iquote../../../../third-party -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/zlib mkdir -p objects g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -static -s -c ../../../../interfaces/src/data/starch/starchBase64Coding.c -o objects/starchBase64Coding.o -iquote../../../../interfaces/general-headers -iquote../../../.. -iquote../../../../third-party -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/zlib mkdir -p ../bin cp starchcluster_gnuParallel.tcsh ../bin/starchcluster_gnuParallel mkdir -p ../bin cp starchcluster_sge.tcsh ../bin/starchcluster_sge mkdir -p ../lib ar rcs ../lib/libstarch.a objects/starchConstants.o objects/unstarchHelpers.o objects/starchHelpers.o objects/starchMetadataHelpers.o objects/starchFileHelpers.o objects/starchSha1Digest.o objects/starchBase64Coding.o mkdir -p ../bin g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -static -s -c starch.c -o objects/starch.o -iquote../../../../interfaces/general-headers -iquote../../../.. -iquote../../../../third-party -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/zlib g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -static -s objects/starch.o -o ../bin/starch ../lib/libstarch.a /builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/jansson/lib/libjansson.a /builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/bzip2/libbz2.a /builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/zlib/libz.a mkdir -p ../bin g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -static -s -c unstarch.c -o objects/unstarch.o -iquote../../../../interfaces/general-headers -iquote../../../.. -iquote../../../../third-party -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/zlib g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -static -s objects/unstarch.o -o ../bin/unstarch ../lib/libstarch.a /builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/jansson/lib/libjansson.a /builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/bzip2/libbz2.a /builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/zlib/libz.a mkdir -p ../bin g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -static -s -c starchcat.c -o objects/starchcat.o -iquote../../../../interfaces/general-headers -iquote../../../.. -iquote../../../../third-party -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/jansson/include -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/bzip2 -I/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/zlib g++ -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -DUSE_ZLIB -DUSE_BZLIB -O2 -Wformat -Wall -Wextra -Wswitch-enum -std=c++11 -static -s objects/starchcat.o -o ../bin/starchcat ../lib/libstarch.a /builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/jansson/lib/libjansson.a /builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/bzip2/libbz2.a /builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src/../../../../third-party/zlib/libz.a make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src' make -C applications/bed/conversion/src -f Makefile build make[3]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/applications/bed/conversion/src' mkdir -p ../bin && gcc -Wall -Wextra -pedantic -std=c99 -D__STDC_CONSTANT_MACROS -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE=1 -O3 -static -iquote"/builddir/build/BUILD/bedops-2.4.19" convert2bed.c -o ../bin/convert2bed -lpthread /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libpthread.a(libpthread.o): In function `sem_open': (.text+0x682b): warning: the use of `mktemp' is dangerous, better use `mkstemp' make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/applications/bed/conversion/src' make[3]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src' make[2]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19' make[1]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19' Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.SmJHis mkdir -p /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin cp applications/bed/conversion/src/wrappers/bam2bed /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/bam2bed cp applications/bed/conversion/src/wrappers/gff2bed /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/gff2bed cp applications/bed/conversion/src/wrappers/gtf2bed /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/gtf2bed cp applications/bed/conversion/src/wrappers/gvf2bed /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/gvf2bed cp applications/bed/conversion/src/wrappers/psl2bed /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/psl2bed cp applications/bed/conversion/src/wrappers/rmsk2bed /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/rmsk2bed cp applications/bed/conversion/src/wrappers/sam2bed /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/sam2bed cp applications/bed/conversion/src/wrappers/vcf2bed /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/vcf2bed cp applications/bed/conversion/src/wrappers/wig2bed /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/wig2bed cp applications/bed/conversion/src/wrappers/bam2starch /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/bam2starch cp applications/bed/conversion/src/wrappers/gff2starch /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/gff2starch cp applications/bed/conversion/src/wrappers/gtf2starch /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/gtf2starch cp applications/bed/conversion/src/wrappers/gvf2starch /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/gvf2starch cp applications/bed/conversion/src/wrappers/psl2starch /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/psl2starch cp applications/bed/conversion/src/wrappers/rmsk2starch /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/rmsk2starch cp applications/bed/conversion/src/wrappers/sam2starch /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/sam2starch cp applications/bed/conversion/src/wrappers/vcf2starch /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/vcf2starch cp applications/bed/conversion/src/wrappers/wig2starch /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/wig2starch cp applications/bed/conversion/src/wrappers/bam2bed_sge /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/bam2bed_sge cp applications/bed/conversion/src/wrappers/bam2bed_gnuParallel /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/bam2bed_gnuParallel + exit 0 + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64 ++ dirname /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64 + cd bedops-2.4.19 + make install BINDIR=/builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin cp applications/bed/conversion/src/wrappers/bam2starch_sge /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/bam2starch_sge cp applications/bed/conversion/src/wrappers/bam2starch_gnuParallel /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/bam2starch_gnuParallel cp applications/bed/starch/bin/starchcluster_sge /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/ cp applications/bed/starch/bin/starchcluster_gnuParallel /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/ cp applications/bed/sort-bed/bin/sort-bed /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/ cp applications/bed/bedops/bin/bedops /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/ cp applications/bed/closestfeats/bin/closest-features /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/ cp applications/bed/bedmap/bin/bedmap /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/ cp applications/bed/bedextract/bin/bedextract /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/ cp applications/bed/starch/bin/starch /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/ cp applications/bed/starch/bin/unstarch /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/ cp applications/bed/starch/bin/starchcat /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/ cp applications/bed/conversion/bin/convert2bed /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/ + /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 /builddir/build/BUILD/bedops-2.4.19 extracting debug info from /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/convert2bed nm: /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/bin/convert2bed: No symbols dwz: Too few files for multifile optimization /usr/lib/rpm/sepdebugcrcfix: Updated 0 CRC32s, 1 CRC32s did match. + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-compress + /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/lib/rpm/redhat/brp-java-repack-jars Processing files: bedops-2.4.19-1.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.oqzYuf + umask 022 + cd /builddir/build/BUILD + cd bedops-2.4.19 + DOCDIR=/builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/share/doc/bedops-2.4.19 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/share/doc/bedops-2.4.19 + cp -pr LICENSE /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/share/doc/bedops-2.4.19 + cp -pr README.md /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64/usr/share/doc/bedops-2.4.19 + exit 0 Provides: bedops = 2.4.19-1 bedops(x86-64) = 2.4.19-1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /bin/bash /bin/tcsh Processing files: bedops-debuginfo-2.4.19-1.x86_64 Provides: bedops-debuginfo = 2.4.19-1 bedops-debuginfo(x86-64) = 2.4.19-1 Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/bedops-2.4.19-1.x86_64 warning: Could not canonicalize hostname: copr-builder-501295510.novalocal Wrote: /builddir/build/RPMS/bedops-2.4.19-1.x86_64.rpm Wrote: /builddir/build/RPMS/bedops-debuginfo-2.4.19-1.x86_64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.Y1Qs2R + umask 022 + cd /builddir/build/BUILD + cd bedops-2.4.19 + make clean make clean -f system.mk/Makefile.linux make[1]: Entering directory `/builddir/build/BUILD/bedops-2.4.19' rm -f bin/debug.sort-bed rm -f bin/debug.bedops rm -f bin/debug.closest-features rm -f bin/debug.bedmap rm -f bin/debug.bedextract rm -f bin/debug.starch rm -f bin/debug.unstarch rm -f bin/debug.starchcat rm -f bin/starchcluster* rm -f bin/bam2bed rm -f bin/bam2bed* rm -f bin/gff2bed rm -f bin/gtf2bed rm -f bin/gvf2bed rm -f bin/psl2bed rm -f bin/rmsk2bed rm -f bin/sam2bed rm -f bin/vcf2bed rm -f bin/wig2bed rm -f bin/debug.convert2bed rm -f bin/bam2starch rm -f bin/bam2starch* rm -f bin/gff2starch rm -f bin/gtf2starch rm -f bin/gvf2starch rm -f bin/psl2starch rm -f bin/rmsk2starch rm -f bin/sam2starch rm -f bin/vcf2starch rm -f bin/wig2starch rm -rf bin rm -f bin/gprof.sort-bed rm -f bin/gprof.bedops rm -f bin/gprof.closest-features rm -f bin/gprof.bedmap rm -f bin/gprof.bedextract rm -f bin/gprof.starch rm -f bin/gprof.unstarch rm -f bin/gprof.starchcat rm -f bin/starchcluster* rm -f bin/bam2bed rm -f bin/bam2bed* rm -f bin/gff2bed rm -f bin/gtf2bed rm -f bin/gvf2bed rm -f bin/psl2bed rm -f bin/rmsk2bed rm -f bin/sam2bed rm -f bin/vcf2bed rm -f bin/wig2bed rm -f bin/gprof.convert2bed rm -f bin/bam2starch rm -f bin/bam2starch* rm -f bin/gff2starch rm -f bin/gtf2starch rm -f bin/gvf2starch rm -f bin/psl2starch rm -f bin/rmsk2starch rm -f bin/sam2starch rm -f bin/vcf2starch rm -f bin/wig2starch rm -rf bin make -C applications/bed/bedmap/src -f Makefile clean make[2]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src' rm -f ../bin/bedmap rm -f ../bin/*.bedmap rm -rf objects rm -rf ../bin make[2]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedmap/src' make -C applications/bed/sort-bed/src -f Makefile clean make[2]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src' rm -rf objects rm -f ../bin/sort-bed rm -f ../bin/*.sort-bed make[2]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/applications/bed/sort-bed/src' make -C applications/bed/bedops/src -f Makefile clean make[2]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src' rm -f ../bin/bedops rm -f ../bin/*.bedops rm -rf objects rm -rf ../bin make[2]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedops/src' make -C applications/bed/closestfeats/src -f Makefile clean make[2]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src' rm -f ../bin/closest-features rm -f ../bin/*.closest-features rm -rf objects rm -rf ../bin make[2]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/applications/bed/closestfeats/src' make -C applications/bed/bedextract/src -f Makefile clean make[2]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src' rm -rf objects rm -f ../bin/bedextract rm -f ../bin/*.bedextract rm -rf ../bin make[2]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/applications/bed/bedextract/src' make -C applications/bed/starch/src -f Makefile clean make[2]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src' rm -f ../lib/libstarch.a rm -f ../lib/libstarch_debug.a rm -f ../lib/libstarch_gprof.a rm -f ../bin/*starch* rm -rf objects rm -rf ../bin make[2]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/applications/bed/starch/src' make -C applications/bed/conversion/src -f Makefile clean make[2]: Entering directory `/builddir/build/BUILD/bedops-2.4.19/applications/bed/conversion/src' rm -rf ../bin rm -rf objects rm -rf *.so *~ make[2]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19/applications/bed/conversion/src' rm -f bin/sort-bed rm -f bin/bedops rm -f bin/closest-features rm -f bin/bedmap rm -f bin/bedextract rm -f bin/starch rm -f bin/unstarch rm -f bin/starchcat rm -f bin/starchcluster* rm -f bin/bam2bed rm -f bin/bam2bed* rm -f bin/gff2bed rm -f bin/gtf2bed rm -f bin/gvf2bed rm -f bin/psl2bed rm -f bin/rmsk2bed rm -f bin/sam2bed rm -f bin/vcf2bed rm -f bin/wig2bed rm -f bin/convert2bed rm -f bin/bam2starch rm -f bin/bam2starch* rm -f bin/gff2starch rm -f bin/gtf2starch rm -f bin/gvf2starch rm -f bin/psl2starch rm -f bin/rmsk2starch rm -f bin/sam2starch rm -f bin/vcf2starch rm -f bin/wig2starch rm -f packaging/os_x/resources/bin/* rm -f packaging/os_x/resources/lib/* rm -Rf packaging/os_x/build/* rm -rf third-party/bzip2-1.0.6 rm -f third-party/bzip2 rm -rf third-party/jansson-2.6 rm -f third-party/jansson rm -rf third-party/zlib-1.2.7 rm -f third-party/zlib rm -rf bin make[1]: Leaving directory `/builddir/build/BUILD/bedops-2.4.19' + exit 0 Child return code was: 0