Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c199' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8440717-fedora-rawhide-x86_64 --chroot fedora-rawhide-x86_64


Version: 1.2
PID: 9026
Logging PID: 9027
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': True,
 'build_id': 8440717,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-x86_64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '167fd627efd0d2b5642d8f2405e8f8169b4d87f1',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/vondruch/mpb.30/mmseq',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'mmseq',
 'package_version': '1.0.11-20',
 'project_dirname': 'mpb.30',
 'project_name': 'mpb.30',
 'project_owner': 'vondruch',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/vondruch/mpb.30/fedora-rawhide-x86_64/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None}],
 'sandbox': 'vondruch/mpb.30--vondruch',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'storage': 0,
 'submitter': 'vondruch',
 'tags': [],
 'task_id': '8440717-fedora-rawhide-x86_64',
 'timeout': 115200,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/vondruch/mpb.30/mmseq /var/lib/copr-rpmbuild/workspace/workdir-81jcjq50/mmseq --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/vondruch/mpb.30/mmseq', '/var/lib/copr-rpmbuild/workspace/workdir-81jcjq50/mmseq', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-81jcjq50/mmseq'...

Running: git checkout 167fd627efd0d2b5642d8f2405e8f8169b4d87f1 --

cmd: ['git', 'checkout', '167fd627efd0d2b5642d8f2405e8f8169b4d87f1', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-81jcjq50/mmseq
rc: 0
stdout: 
stderr: Note: switching to '167fd627efd0d2b5642d8f2405e8f8169b4d87f1'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 167fd62 automatic import of mmseq

Running: dist-git-client sources

cmd: ['dist-git-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-81jcjq50/mmseq
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading 1.0.11.zip
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o 1.0.11.zip --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/vondruch/mpb.30/mmseq/1.0.11.zip/md5/c727916d339d7a2111523800b621ce2b/1.0.11.zip
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
                                 Dload  Upload   Total   Spent    Left  Speed
100 2781k  100 2781k    0     0  27.9M      0 --:--:-- --:--:-- --:--:-- 28.0M
INFO: Reading stdout from command: md5sum 1.0.11.zip

Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-81jcjq50/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-81jcjq50/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1734958332.919499 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 6.0 starting (python version = 3.13.0, NVR = mock-6.0-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-81jcjq50/mmseq/mmseq.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-81jcjq50/mmseq --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1734958332.919499 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-81jcjq50/mmseq/mmseq.spec)  Config(fedora-rawhide-x86_64)
Start: clean chroot
Finish: clean chroot
Mock Version: 6.0
INFO: Mock Version: 6.0
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1734958332.919499/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using container image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Tagging container image as mock-bootstrap-5252dae5-5c0e-489f-8db5-f6ed49e46483
INFO: Checking that ca45695bf57dcc102266c6e5938efb7738b1dcc7b802b0ab6c00f8195cd4b4fc image matches host's architecture
INFO: Copy content of container ca45695bf57dcc102266c6e5938efb7738b1dcc7b802b0ab6c00f8195cd4b4fc to /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1734958332.919499/root
INFO: mounting ca45695bf57dcc102266c6e5938efb7738b1dcc7b802b0ab6c00f8195cd4b4fc with podman image mount
INFO: image ca45695bf57dcc102266c6e5938efb7738b1dcc7b802b0ab6c00f8195cd4b4fc as /var/lib/containers/storage/overlay/ec5ea1f8b388555c3b1873271a816ac146565bb8d86913b7b6c74bfbc9efcccd/merged
INFO: umounting image ca45695bf57dcc102266c6e5938efb7738b1dcc7b802b0ab6c00f8195cd4b4fc (/var/lib/containers/storage/overlay/ec5ea1f8b388555c3b1873271a816ac146565bb8d86913b7b6c74bfbc9efcccd/merged) with podman image umount
INFO: Removing image mock-bootstrap-5252dae5-5c0e-489f-8db5-f6ed49e46483
INFO: Package manager dnf5 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1734958332.919499/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.20.0-1.fc42.x86_64
  rpm-sequoia-1.7.0-3.fc42.x86_64
  dnf5-5.2.8.1-2.fc42.x86_64
  dnf5-plugins-5.2.8.1-2.fc42.x86_64
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 fedora                                 100% |  20.4 MiB/s |  22.9 MiB |  00m01s
 Copr repository                        100% | 849.9 KiB/s | 102.8 KiB |  00m00s
Repositories loaded.
Package                            Arch   Version                    Repository      Size
Installing group/module packages:
 bash                              x86_64 5.2.37-1.fc42              fedora       8.2 MiB
 bzip2                             x86_64 1.0.8-19.fc41              fedora      95.7 KiB
 coreutils                         x86_64 9.5-11.fc42                fedora       5.4 MiB
 cpio                              x86_64 2.15-2.fc41                fedora       1.1 MiB
 diffutils                         x86_64 3.10-8.fc41                fedora       1.6 MiB
 fedora-release-common             noarch 42-0.11                    fedora      19.8 KiB
 findutils                         x86_64 1:4.10.0-4.fc41            fedora       1.8 MiB
 gawk                              x86_64 5.3.0-4.fc41               fedora       1.7 MiB
 glibc-minimal-langpack            x86_64 2.40.9000-24.fc42          fedora       0.0   B
 grep                              x86_64 3.11-9.fc41                fedora       1.0 MiB
 gzip                              x86_64 1.13-2.fc41                fedora     389.0 KiB
 info                              x86_64 7.1.1-2.fc42               fedora     361.8 KiB
 patch                             x86_64 2.7.6-25.fc41              fedora     266.7 KiB
 redhat-rpm-config                 noarch 296-1.fc42                 fedora     186.6 KiB
 rpm-build                         x86_64 4.20.0-1.fc42              fedora     194.3 KiB
 sed                               x86_64 4.9-3.fc41                 fedora     861.5 KiB
 shadow-utils                      x86_64 2:4.17.0~rc1-1.fc42        fedora       4.1 MiB
 tar                               x86_64 2:1.35-4.fc41              fedora       2.9 MiB
 unzip                             x86_64 6.0-65.fc42                fedora     398.2 KiB
 util-linux                        x86_64 2.40.2-8.fc42              fedora       3.7 MiB
 which                             x86_64 2.21-42.fc41               fedora      80.2 KiB
 xz                                x86_64 1:5.6.3-2.fc42             fedora       1.2 MiB
Installing dependencies:
 add-determinism                   x86_64 0.4.3-1.fc42               fedora       2.4 MiB
 alternatives                      x86_64 1.31-1.fc42                fedora      64.8 KiB
 ansible-srpm-macros               noarch 1-16.fc41                  fedora      35.7 KiB
 audit-libs                        x86_64 4.0.2-1.fc41               fedora     331.3 KiB
 authselect                        x86_64 1.5.0-8.fc42               fedora     157.5 KiB
 authselect-libs                   x86_64 1.5.0-8.fc42               fedora     822.2 KiB
 basesystem                        noarch 11-21.fc41                 fedora       0.0   B
 binutils                          x86_64 2.43.50-9.fc42             fedora      25.8 MiB
 build-reproducibility-srpm-macros noarch 0.4.3-1.fc42               fedora     735.0   B
 bzip2-libs                        x86_64 1.0.8-19.fc41              fedora      80.7 KiB
 ca-certificates                   noarch 2024.2.69_v8.0.401-3.fc42  fedora       2.6 MiB
 coreutils-common                  x86_64 9.5-11.fc42                fedora      11.2 MiB
 cracklib                          x86_64 2.9.11-6.fc41              fedora     238.9 KiB
 crypto-policies                   noarch 20241128-1.gitbb7b0b0.fc42 fedora     137.3 KiB
 curl                              x86_64 8.11.1-2.fc42              fedora     452.0 KiB
 cyrus-sasl-lib                    x86_64 2.1.28-27.fc41             fedora       2.3 MiB
 debugedit                         x86_64 5.1-2.fc42                 fedora     200.3 KiB
 dwz                               x86_64 0.15-8.fc42                fedora     299.2 KiB
 ed                                x86_64 1.20.2-2.fc41              fedora     146.9 KiB
 efi-srpm-macros                   noarch 5-13.fc42                  fedora      40.2 KiB
 elfutils                          x86_64 0.192-7.fc42               fedora       2.6 MiB
 elfutils-debuginfod-client        x86_64 0.192-7.fc42               fedora      81.4 KiB
 elfutils-default-yama-scope       noarch 0.192-7.fc42               fedora       1.8 KiB
 elfutils-libelf                   x86_64 0.192-7.fc42               fedora       1.2 MiB
 elfutils-libs                     x86_64 0.192-7.fc42               fedora     662.9 KiB
 fedora-gpg-keys                   noarch 42-0.3                     fedora     126.4 KiB
 fedora-release                    noarch 42-0.11                    fedora       0.0   B
 fedora-release-identity-basic     noarch 42-0.11                    fedora     719.0   B
 fedora-repos                      noarch 42-0.3                     fedora       4.9 KiB
 fedora-repos-rawhide              noarch 42-0.3                     fedora       2.2 KiB
 file                              x86_64 5.45-8.fc42                fedora     103.7 KiB
 file-libs                         x86_64 5.45-8.fc42                fedora       9.9 MiB
 filesystem                        x86_64 3.18-29.fc42               fedora     106.0   B
 fonts-srpm-macros                 noarch 1:2.0.5-17.fc41            fedora      55.8 KiB
 forge-srpm-macros                 noarch 0.4.0-1.fc42               fedora      38.9 KiB
 fpc-srpm-macros                   noarch 1.3-13.fc41                fedora     144.0   B
 gdb-minimal                       x86_64 15.2-4.fc42                fedora      12.7 MiB
 gdbm                              x86_64 1:1.23-7.fc41              fedora     460.9 KiB
 gdbm-libs                         x86_64 1:1.23-7.fc41              fedora     121.9 KiB
 ghc-srpm-macros                   noarch 1.9.2-1.fc42               fedora     779.0   B
 glibc                             x86_64 2.40.9000-24.fc42          fedora       6.7 MiB
 glibc-common                      x86_64 2.40.9000-24.fc42          fedora       1.0 MiB
 glibc-gconv-extra                 x86_64 2.40.9000-24.fc42          fedora       8.0 MiB
 gmp                               x86_64 1:6.3.0-2.fc41             fedora     811.4 KiB
 gnat-srpm-macros                  noarch 6-6.fc41                   fedora       1.0 KiB
 go-srpm-macros                    noarch 3.6.0-5.fc42               fedora      60.8 KiB
 jansson                           x86_64 2.14-1.fc42                fedora      93.1 KiB
 json-c                            x86_64 0.18-1.fc42                fedora      83.3 KiB
 kernel-srpm-macros                noarch 1.0-24.fc41                fedora       1.9 KiB
 keyutils-libs                     x86_64 1.6.3-4.fc41               fedora      54.4 KiB
 krb5-libs                         x86_64 1.21.3-3.fc42              fedora       2.3 MiB
 libacl                            x86_64 2.3.2-2.fc41               fedora      40.0 KiB
 libarchive                        x86_64 3.7.7-1.fc42               fedora     932.3 KiB
 libattr                           x86_64 2.5.2-4.fc41               fedora      28.5 KiB
 libblkid                          x86_64 2.40.2-8.fc42              fedora     262.5 KiB
 libbrotli                         x86_64 1.1.0-5.fc41               fedora     837.6 KiB
 libcap                            x86_64 2.71-1.fc42                fedora     210.8 KiB
 libcap-ng                         x86_64 0.8.5-3.fc41               fedora      69.2 KiB
 libcom_err                        x86_64 1.47.1-6.fc42              fedora      67.2 KiB
 libcurl                           x86_64 8.11.1-2.fc42              fedora     817.3 KiB
 libeconf                          x86_64 0.7.5-1.fc42               fedora      66.7 KiB
 libevent                          x86_64 2.1.12-14.fc41             fedora     895.7 KiB
 libfdisk                          x86_64 2.40.2-8.fc42              fedora     362.9 KiB
 libffi                            x86_64 3.4.6-3.fc42               fedora      86.4 KiB
 libgcc                            x86_64 14.2.1-6.fc42              fedora     270.6 KiB
 libgomp                           x86_64 14.2.1-6.fc42              fedora     519.8 KiB
 libidn2                           x86_64 2.3.7-2.fc41               fedora     329.1 KiB
 libmount                          x86_64 2.40.2-8.fc42              fedora     355.8 KiB
 libnghttp2                        x86_64 1.64.0-1.fc42              fedora     174.5 KiB
 libnsl2                           x86_64 2.0.1-2.fc41               fedora      57.9 KiB
 libpkgconf                        x86_64 2.3.0-1.fc42               fedora      78.2 KiB
 libpsl                            x86_64 0.21.5-4.fc41              fedora      80.5 KiB
 libpwquality                      x86_64 1.4.5-11.fc41              fedora     417.8 KiB
 libselinux                        x86_64 3.8-0.rc3.1.fc42           copr_base  191.6 KiB
 libsemanage                       x86_64 3.8-0.rc3.1.fc42           fedora     305.3 KiB
 libsepol                          x86_64 3.8-0.rc3.1.fc42           fedora     812.3 KiB
 libsmartcols                      x86_64 2.40.2-8.fc42              fedora     180.4 KiB
 libssh                            x86_64 0.11.1-1.fc42              fedora     569.6 KiB
 libssh-config                     noarch 0.11.1-1.fc42              fedora     277.0   B
 libstdc++                         x86_64 14.2.1-6.fc42              fedora       2.8 MiB
 libtasn1                          x86_64 4.19.0-9.fc41              fedora     175.7 KiB
 libtirpc                          x86_64 1.3.6-1.fc42               fedora     205.5 KiB
 libtool-ltdl                      x86_64 2.5.4-1.fc42               fedora      68.1 KiB
 libunistring                      x86_64 1.1-8.fc41                 fedora       1.7 MiB
 libuuid                           x86_64 2.40.2-8.fc42              fedora      41.4 KiB
 libverto                          x86_64 0.3.2-9.fc41               fedora      29.5 KiB
 libxcrypt                         x86_64 4.4.36-12.fc42             fedora     269.3 KiB
 libxml2                           x86_64 2.12.8-2.fc41              fedora       1.7 MiB
 libzstd                           x86_64 1.5.6-2.fc41               fedora     795.9 KiB
 lua-libs                          x86_64 5.4.7-1.fc42               fedora     285.0 KiB
 lua-srpm-macros                   noarch 1-14.fc41                  fedora       1.3 KiB
 lz4-libs                          x86_64 1.10.0-1.fc41              fedora     145.5 KiB
 mpfr                              x86_64 4.2.1-5.fc41               fedora     832.1 KiB
 ncurses-base                      noarch 6.5-2.20240629.fc41        fedora     326.3 KiB
 ncurses-libs                      x86_64 6.5-2.20240629.fc41        fedora     975.2 KiB
 ocaml-srpm-macros                 noarch 10-3.fc41                  fedora       1.9 KiB
 openblas-srpm-macros              noarch 2-18.fc41                  fedora     112.0   B
 openldap                          x86_64 2.6.8-6.fc42               fedora     647.4 KiB
 openssl-libs                      x86_64 1:3.2.2-8.fc42             fedora       7.8 MiB
 p11-kit                           x86_64 0.25.5-4.fc42              fedora       2.2 MiB
 p11-kit-trust                     x86_64 0.25.5-4.fc42              fedora     403.8 KiB
 package-notes-srpm-macros         noarch 0.5-12.fc41                fedora       1.6 KiB
 pam                               x86_64 1.7.0-3.fc42               fedora       1.8 MiB
 pam-libs                          x86_64 1.7.0-3.fc42               fedora     139.4 KiB
 pcre2                             x86_64 10.44-1.fc41.1             fedora     653.5 KiB
 pcre2-syntax                      noarch 10.44-1.fc41.1             fedora     251.6 KiB
 perl-srpm-macros                  noarch 1-56.fc41                  fedora     861.0   B
 pkgconf                           x86_64 2.3.0-1.fc42               fedora      88.6 KiB
 pkgconf-m4                        noarch 2.3.0-1.fc42               fedora      14.4 KiB
 pkgconf-pkg-config                x86_64 2.3.0-1.fc42               fedora     989.0   B
 popt                              x86_64 1.19-7.fc41                fedora     136.9 KiB
 publicsuffix-list-dafsa           noarch 20240107-4.fc41            fedora      67.5 KiB
 pyproject-srpm-macros             noarch 1.16.3-1.fc42              fedora       1.9 KiB
 python-srpm-macros                noarch 3.13-3.fc41                fedora      51.0 KiB
 qt5-srpm-macros                   noarch 5.15.15-1.fc42             fedora     500.0   B
 qt6-srpm-macros                   noarch 6.8.1-4.fc42               fedora     456.0   B
 readline                          x86_64 8.2-11.fc42                fedora     493.1 KiB
 rpm                               x86_64 4.20.0-1.fc42              fedora       3.1 MiB
 rpm-build-libs                    x86_64 4.20.0-1.fc42              fedora     206.7 KiB
 rpm-libs                          x86_64 4.20.0-1.fc42              fedora     726.1 KiB
 rpm-sequoia                       x86_64 1.7.0-3.fc42               fedora       2.3 MiB
 rust-srpm-macros                  noarch 26.3-3.fc42                fedora       4.8 KiB
 setup                             noarch 2.15.0-5.fc41              fedora     720.7 KiB
 sqlite-libs                       x86_64 3.47.2-1.fc42              fedora       1.4 MiB
 systemd-libs                      x86_64 257.1-1.fc42               fedora       2.2 MiB
 util-linux-core                   x86_64 2.40.2-8.fc42              fedora       1.5 MiB
 xxhash-libs                       x86_64 0.8.2-4.fc42               fedora      88.4 KiB
 xz-libs                           x86_64 1:5.6.3-2.fc42             fedora     218.4 KiB
 zig-srpm-macros                   noarch 1-3.fc41                   fedora       1.1 KiB
 zip                               x86_64 3.0-42.fc42                fedora     695.9 KiB
 zlib-ng-compat                    x86_64 2.2.2-1.fc42               fedora     134.0 KiB
 zstd                              x86_64 1.5.6-2.fc41               fedora       1.7 MiB
Installing groups:
 Buildsystem building group                                                              

Transaction Summary:
 Installing:       154 packages

Total size of inbound packages is 52 MiB. Need to download 52 MiB.
After this operation, 178 MiB extra will be used (install 178 MiB, remove 0 B).
[  1/154] bzip2-0:1.0.8-19.fc41.x86_64  100% | 255.0 KiB/s |  52.5 KiB |  00m00s
[  2/154] cpio-0:2.15-2.fc41.x86_64     100% |   2.1 MiB/s | 291.8 KiB |  00m00s
[  3/154] coreutils-0:9.5-11.fc42.x86_6 100% |   2.9 MiB/s |   1.1 MiB |  00m00s
[  4/154] bash-0:5.2.37-1.fc42.x86_64   100% |   4.5 MiB/s |   1.8 MiB |  00m00s
[  5/154] fedora-release-common-0:42-0. 100% | 497.2 KiB/s |  23.9 KiB |  00m00s
[  6/154] diffutils-0:3.10-8.fc41.x86_6 100% |   4.2 MiB/s | 405.4 KiB |  00m00s
[  7/154] findutils-1:4.10.0-4.fc41.x86 100% |   9.6 MiB/s | 548.6 KiB |  00m00s
[  8/154] glibc-minimal-langpack-0:2.40 100% |   2.8 MiB/s | 122.0 KiB |  00m00s
[  9/154] grep-0:3.11-9.fc41.x86_64     100% |   5.4 MiB/s | 299.8 KiB |  00m00s
[ 10/154] gzip-0:1.13-2.fc41.x86_64     100% |   3.5 MiB/s | 170.2 KiB |  00m00s
[ 11/154] info-0:7.1.1-2.fc42.x86_64    100% |   3.5 MiB/s | 183.2 KiB |  00m00s
[ 12/154] redhat-rpm-config-0:296-1.fc4 100% |   1.6 MiB/s |  82.4 KiB |  00m00s
[ 13/154] rpm-build-0:4.20.0-1.fc42.x86 100% |   1.4 MiB/s |  82.7 KiB |  00m00s
[ 14/154] sed-0:4.9-3.fc41.x86_64       100% |   7.1 MiB/s | 317.7 KiB |  00m00s
[ 15/154] shadow-utils-2:4.17.0~rc1-1.f 100% |  16.2 MiB/s |   1.3 MiB |  00m00s
[ 16/154] tar-2:1.35-4.fc41.x86_64      100% |  15.0 MiB/s | 860.7 KiB |  00m00s
[ 17/154] which-0:2.21-42.fc41.x86_64   100% |   1.0 MiB/s |  41.6 KiB |  00m00s
[ 18/154] unzip-0:6.0-65.fc42.x86_64    100% |   4.3 MiB/s | 184.5 KiB |  00m00s
[ 19/154] xz-1:5.6.3-2.fc42.x86_64      100% |   9.7 MiB/s | 475.4 KiB |  00m00s
[ 20/154] gawk-0:5.3.0-4.fc41.x86_64    100% |  18.2 MiB/s |   1.1 MiB |  00m00s
[ 21/154] patch-0:2.7.6-25.fc41.x86_64  100% | 454.7 KiB/s | 131.0 KiB |  00m00s
[ 22/154] util-linux-0:2.40.2-8.fc42.x8 100% |  17.9 MiB/s |   1.2 MiB |  00m00s
[ 23/154] filesystem-0:3.18-29.fc42.x86 100% |  18.4 MiB/s |   1.1 MiB |  00m00s
[ 24/154] ncurses-libs-0:6.5-2.20240629 100% |   7.2 MiB/s | 334.0 KiB |  00m00s
[ 25/154] bzip2-libs-0:1.0.8-19.fc41.x8 100% |   1.0 MiB/s |  41.1 KiB |  00m00s
[ 26/154] gmp-1:6.3.0-2.fc41.x86_64     100% |   6.5 MiB/s | 318.0 KiB |  00m00s
[ 27/154] glibc-0:2.40.9000-24.fc42.x86 100% |  16.7 MiB/s |   2.2 MiB |  00m00s
[ 28/154] coreutils-common-0:9.5-11.fc4 100% |  26.9 MiB/s |   2.1 MiB |  00m00s
[ 29/154] libacl-0:2.3.2-2.fc41.x86_64  100% | 628.2 KiB/s |  24.5 KiB |  00m00s
[ 30/154] libattr-0:2.5.2-4.fc41.x86_64 100% | 465.9 KiB/s |  18.2 KiB |  00m00s
[ 31/154] libcap-0:2.71-1.fc42.x86_64   100% |   2.2 MiB/s |  86.4 KiB |  00m00s
[ 32/154] systemd-libs-0:257.1-1.fc42.x 100% |  14.8 MiB/s | 770.4 KiB |  00m00s
[ 33/154] fedora-repos-0:42-0.3.noarch  100% | 229.8 KiB/s |   9.2 KiB |  00m00s
[ 34/154] openssl-libs-1:3.2.2-8.fc42.x 100% |  27.5 MiB/s |   2.3 MiB |  00m00s
[ 35/154] glibc-common-0:2.40.9000-24.f 100% |   9.0 MiB/s | 396.0 KiB |  00m00s
[ 36/154] pcre2-0:10.44-1.fc41.1.x86_64 100% |   5.7 MiB/s | 243.1 KiB |  00m00s
[ 37/154] ed-0:1.20.2-2.fc41.x86_64     100% |   2.0 MiB/s |  81.8 KiB |  00m00s
[ 38/154] ansible-srpm-macros-0:1-16.fc 100% | 532.7 KiB/s |  20.8 KiB |  00m00s
[ 39/154] build-reproducibility-srpm-ma 100% | 286.7 KiB/s |  11.2 KiB |  00m00s
[ 40/154] dwz-0:0.15-8.fc42.x86_64      100% |   3.4 MiB/s | 139.1 KiB |  00m00s
[ 41/154] efi-srpm-macros-0:5-13.fc42.n 100% | 575.9 KiB/s |  22.5 KiB |  00m00s
[ 42/154] file-0:5.45-8.fc42.x86_64     100% |   1.2 MiB/s |  48.6 KiB |  00m00s
[ 43/154] fonts-srpm-macros-1:2.0.5-17. 100% | 691.5 KiB/s |  27.0 KiB |  00m00s
[ 44/154] forge-srpm-macros-0:0.4.0-1.f 100% | 506.7 KiB/s |  19.8 KiB |  00m00s
[ 45/154] fpc-srpm-macros-0:1.3-13.fc41 100% | 204.2 KiB/s |   8.0 KiB |  00m00s
[ 46/154] ghc-srpm-macros-0:1.9.2-1.fc4 100% | 233.8 KiB/s |   9.1 KiB |  00m00s
[ 47/154] gnat-srpm-macros-0:6-6.fc41.n 100% | 229.5 KiB/s |   9.0 KiB |  00m00s
[ 48/154] go-srpm-macros-0:3.6.0-5.fc42 100% | 716.9 KiB/s |  28.0 KiB |  00m00s
[ 49/154] kernel-srpm-macros-0:1.0-24.f 100% | 253.0 KiB/s |   9.9 KiB |  00m00s
[ 50/154] lua-srpm-macros-0:1-14.fc41.n 100% | 227.7 KiB/s |   8.9 KiB |  00m00s
[ 51/154] ocaml-srpm-macros-0:10-3.fc41 100% | 235.9 KiB/s |   9.2 KiB |  00m00s
[ 52/154] openblas-srpm-macros-0:2-18.f 100% | 197.8 KiB/s |   7.7 KiB |  00m00s
[ 53/154] package-notes-srpm-macros-0:0 100% | 252.0 KiB/s |   9.8 KiB |  00m00s
[ 54/154] perl-srpm-macros-0:1-56.fc41. 100% | 218.3 KiB/s |   8.5 KiB |  00m00s
[ 55/154] pyproject-srpm-macros-0:1.16. 100% | 355.5 KiB/s |  13.9 KiB |  00m00s
[ 56/154] python-srpm-macros-0:3.13-3.f 100% | 608.2 KiB/s |  23.7 KiB |  00m00s
[ 57/154] qt5-srpm-macros-0:5.15.15-1.f 100% | 228.2 KiB/s |   8.9 KiB |  00m00s
[ 58/154] qt6-srpm-macros-0:6.8.1-4.fc4 100% | 237.6 KiB/s |   9.3 KiB |  00m00s
[ 59/154] rpm-0:4.20.0-1.fc42.x86_64    100% |  11.6 MiB/s | 547.3 KiB |  00m00s
[ 60/154] rust-srpm-macros-0:26.3-3.fc4 100% | 310.2 KiB/s |  12.1 KiB |  00m00s
[ 61/154] zig-srpm-macros-0:1-3.fc41.no 100% | 208.3 KiB/s |   8.1 KiB |  00m00s
[ 62/154] zip-0:3.0-42.fc42.x86_64      100% |   6.0 MiB/s | 256.7 KiB |  00m00s
[ 63/154] debugedit-0:5.1-2.fc42.x86_64 100% |   2.0 MiB/s |  78.2 KiB |  00m00s
[ 64/154] elfutils-0:0.192-7.fc42.x86_6 100% |  11.2 MiB/s | 504.7 KiB |  00m00s
[ 65/154] elfutils-libelf-0:0.192-7.fc4 100% |   4.9 MiB/s | 204.6 KiB |  00m00s
[ 66/154] libarchive-0:3.7.7-1.fc42.x86 100% |   9.2 MiB/s | 413.9 KiB |  00m00s
[ 67/154] popt-0:1.19-7.fc41.x86_64     100% |   1.7 MiB/s |  65.9 KiB |  00m00s
[ 68/154] readline-0:8.2-11.fc42.x86_64 100% |   5.1 MiB/s | 213.4 KiB |  00m00s
[ 69/154] rpm-build-libs-0:4.20.0-1.fc4 100% |   2.4 MiB/s |  98.7 KiB |  00m00s
[ 70/154] rpm-libs-0:4.20.0-1.fc42.x86_ 100% |   7.2 MiB/s | 309.5 KiB |  00m00s
[ 71/154] audit-libs-0:4.0.2-1.fc41.x86 100% |   3.1 MiB/s | 126.2 KiB |  00m00s
[ 72/154] zstd-0:1.5.6-2.fc41.x86_64    100% |  10.2 MiB/s | 481.5 KiB |  00m00s
[ 73/154] libeconf-0:0.7.5-1.fc42.x86_6 100% | 847.9 KiB/s |  33.1 KiB |  00m00s
[ 74/154] libsemanage-0:3.8-0.rc3.1.fc4 100% |   2.8 MiB/s | 116.1 KiB |  00m00s
[ 75/154] libxcrypt-0:4.4.36-12.fc42.x8 100% |   2.8 MiB/s | 115.8 KiB |  00m00s
[ 76/154] pam-libs-0:1.7.0-3.fc42.x86_6 100% |   1.5 MiB/s |  58.0 KiB |  00m00s
[ 77/154] xz-libs-1:5.6.3-2.fc42.x86_64 100% |   2.7 MiB/s | 111.9 KiB |  00m00s
[ 78/154] setup-0:2.15.0-5.fc41.noarch  100% |   3.7 MiB/s | 154.4 KiB |  00m00s
[ 79/154] mpfr-0:4.2.1-5.fc41.x86_64    100% |   8.1 MiB/s | 346.3 KiB |  00m00s
[ 80/154] libcap-ng-0:0.8.5-3.fc41.x86_ 100% | 834.9 KiB/s |  32.6 KiB |  00m00s
[ 81/154] libblkid-0:2.40.2-8.fc42.x86_ 100% |   3.1 MiB/s | 125.0 KiB |  00m00s
[ 82/154] libfdisk-0:2.40.2-8.fc42.x86_ 100% |   3.9 MiB/s | 159.6 KiB |  00m00s
[ 83/154] libsmartcols-0:2.40.2-8.fc42. 100% |   2.0 MiB/s |  83.9 KiB |  00m00s
[ 84/154] libmount-0:2.40.2-8.fc42.x86_ 100% |   3.7 MiB/s | 156.1 KiB |  00m00s
[ 85/154] libuuid-0:2.40.2-8.fc42.x86_6 100% | 743.0 KiB/s |  29.0 KiB |  00m00s
[ 86/154] zlib-ng-compat-0:2.2.2-1.fc42 100% |   1.9 MiB/s |  76.9 KiB |  00m00s
[ 87/154] util-linux-core-0:2.40.2-8.fc 100% |  11.7 MiB/s | 537.3 KiB |  00m00s
[ 88/154] glibc-gconv-extra-0:2.40.9000 100% |  28.0 MiB/s |   1.5 MiB |  00m00s
[ 89/154] basesystem-0:11-21.fc41.noarc 100% | 189.0 KiB/s |   7.4 KiB |  00m00s
[ 90/154] libgcc-0:14.2.1-6.fc42.x86_64 100% |   3.3 MiB/s | 135.2 KiB |  00m00s
[ 91/154] ncurses-base-0:6.5-2.20240629 100% |   2.2 MiB/s |  88.4 KiB |  00m00s
[ 92/154] crypto-policies-0:20241128-1. 100% |   2.3 MiB/s |  98.4 KiB |  00m00s
[ 93/154] ca-certificates-0:2024.2.69_v 100% |  18.1 MiB/s | 944.5 KiB |  00m00s
[ 94/154] fedora-gpg-keys-0:42-0.3.noar 100% |   3.3 MiB/s | 133.6 KiB |  00m00s
[ 95/154] fedora-repos-rawhide-0:42-0.3 100% | 224.7 KiB/s |   8.8 KiB |  00m00s
[ 96/154] pcre2-syntax-0:10.44-1.fc41.1 100% |   3.7 MiB/s | 149.9 KiB |  00m00s
[ 97/154] add-determinism-0:0.4.3-1.fc4 100% |  18.4 MiB/s | 904.4 KiB |  00m00s
[ 98/154] curl-0:8.11.1-2.fc42.x86_64   100% |   5.1 MiB/s | 220.2 KiB |  00m00s
[ 99/154] file-libs-0:5.45-8.fc42.x86_6 100% |  15.2 MiB/s | 763.6 KiB |  00m00s
[100/154] elfutils-libs-0:0.192-7.fc42. 100% |   6.0 MiB/s | 251.9 KiB |  00m00s
[101/154] elfutils-debuginfod-client-0: 100% |   1.1 MiB/s |  43.9 KiB |  00m00s
[102/154] libstdc++-0:14.2.1-6.fc42.x86 100% |  17.4 MiB/s | 890.1 KiB |  00m00s
[103/154] libzstd-0:1.5.6-2.fc41.x86_64 100% |   7.2 MiB/s | 310.3 KiB |  00m00s
[104/154] libxml2-0:2.12.8-2.fc41.x86_6 100% |  14.3 MiB/s | 687.3 KiB |  00m00s
[105/154] lz4-libs-0:1.10.0-1.fc41.x86_ 100% |   1.8 MiB/s |  70.7 KiB |  00m00s
[106/154] libgomp-0:14.2.1-6.fc42.x86_6 100% |   8.3 MiB/s | 356.9 KiB |  00m00s
[107/154] lua-libs-0:5.4.7-1.fc42.x86_6 100% |   3.2 MiB/s | 132.1 KiB |  00m00s
[108/154] rpm-sequoia-0:1.7.0-3.fc42.x8 100% |  16.5 MiB/s | 826.0 KiB |  00m00s
[109/154] sqlite-libs-0:3.47.2-1.fc42.x 100% |  15.2 MiB/s | 699.8 KiB |  00m00s
[110/154] libsepol-0:3.8-0.rc3.1.fc42.x 100% |   7.6 MiB/s | 332.6 KiB |  00m00s
[111/154] elfutils-default-yama-scope-0 100% | 319.6 KiB/s |  12.5 KiB |  00m00s
[112/154] json-c-0:0.18-1.fc42.x86_64   100% |   1.1 MiB/s |  44.4 KiB |  00m00s
[113/154] libselinux-0:3.8-0.rc3.1.fc42 100% |   2.3 MiB/s |  91.7 KiB |  00m00s
[114/154] authselect-libs-0:1.5.0-8.fc4 100% |   5.2 MiB/s | 218.0 KiB |  00m00s
[115/154] pam-0:1.7.0-3.fc42.x86_64     100% |  11.8 MiB/s | 554.3 KiB |  00m00s
[116/154] authselect-0:1.5.0-8.fc42.x86 100% |   3.6 MiB/s | 145.8 KiB |  00m00s
[117/154] gdbm-libs-1:1.23-7.fc41.x86_6 100% |   1.4 MiB/s |  56.3 KiB |  00m00s
[118/154] libnsl2-0:2.0.1-2.fc41.x86_64 100% | 759.2 KiB/s |  29.6 KiB |  00m00s
[119/154] libpwquality-0:1.4.5-11.fc41. 100% |   2.9 MiB/s | 119.1 KiB |  00m00s
[120/154] libtirpc-0:1.3.6-1.fc42.x86_6 100% |   2.3 MiB/s |  94.9 KiB |  00m00s
[121/154] cracklib-0:2.9.11-6.fc41.x86_ 100% |   2.2 MiB/s |  92.0 KiB |  00m00s
[122/154] krb5-libs-0:1.21.3-3.fc42.x86 100% |  16.1 MiB/s | 760.4 KiB |  00m00s
[123/154] libcom_err-0:1.47.1-6.fc42.x8 100% | 681.3 KiB/s |  26.6 KiB |  00m00s
[124/154] keyutils-libs-0:1.6.3-4.fc41. 100% | 811.5 KiB/s |  31.6 KiB |  00m00s
[125/154] libverto-0:0.3.2-9.fc41.x86_6 100% | 530.5 KiB/s |  20.7 KiB |  00m00s
[126/154] alternatives-0:1.31-1.fc42.x8 100% | 985.1 KiB/s |  39.4 KiB |  00m00s
[127/154] jansson-0:2.14-1.fc42.x86_64  100% |   1.1 MiB/s |  45.3 KiB |  00m00s
[128/154] pkgconf-pkg-config-0:2.3.0-1. 100% | 256.7 KiB/s |  10.0 KiB |  00m00s
[129/154] binutils-0:2.43.50-9.fc42.x86 100% |  49.9 MiB/s |   5.8 MiB |  00m00s
[130/154] pkgconf-0:2.3.0-1.fc42.x86_64 100% |   1.1 MiB/s |  45.2 KiB |  00m00s
[131/154] pkgconf-m4-0:2.3.0-1.fc42.noa 100% | 367.2 KiB/s |  14.3 KiB |  00m00s
[132/154] libpkgconf-0:2.3.0-1.fc42.x86 100% | 986.9 KiB/s |  38.5 KiB |  00m00s
[133/154] gdbm-1:1.23-7.fc41.x86_64     100% |   3.7 MiB/s | 151.8 KiB |  00m00s
[134/154] libffi-0:3.4.6-3.fc42.x86_64  100% |   1.0 MiB/s |  40.0 KiB |  00m00s
[135/154] libtasn1-0:4.19.0-9.fc41.x86_ 100% |   1.7 MiB/s |  74.2 KiB |  00m00s
[136/154] p11-kit-0:0.25.5-4.fc42.x86_6 100% |  10.9 MiB/s | 492.0 KiB |  00m00s
[137/154] p11-kit-trust-0:0.25.5-4.fc42 100% |   3.3 MiB/s | 133.2 KiB |  00m00s
[138/154] fedora-release-0:42-0.11.noar 100% | 332.9 KiB/s |  13.0 KiB |  00m00s
[139/154] xxhash-libs-0:0.8.2-4.fc42.x8 100% | 707.2 KiB/s |  36.8 KiB |  00m00s
[140/154] fedora-release-identity-basic 100% | 353.5 KiB/s |  13.8 KiB |  00m00s
[141/154] gdb-minimal-0:15.2-4.fc42.x86 100% |  45.4 MiB/s |   4.0 MiB |  00m00s
[142/154] libcurl-0:8.11.1-2.fc42.x86_6 100% |   8.1 MiB/s | 356.7 KiB |  00m00s
[143/154] libbrotli-0:1.1.0-5.fc41.x86_ 100% |   7.9 MiB/s | 340.5 KiB |  00m00s
[144/154] libidn2-0:2.3.7-2.fc41.x86_64 100% |   2.9 MiB/s | 118.4 KiB |  00m00s
[145/154] libnghttp2-0:1.64.0-1.fc42.x8 100% |   1.9 MiB/s |  77.4 KiB |  00m00s
[146/154] libpsl-0:0.21.5-4.fc41.x86_64 100% |   1.6 MiB/s |  64.1 KiB |  00m00s
[147/154] libssh-0:0.11.1-1.fc42.x86_64 100% |   5.5 MiB/s | 231.9 KiB |  00m00s
[148/154] openldap-0:2.6.8-6.fc42.x86_6 100% |   5.7 MiB/s | 243.4 KiB |  00m00s
[149/154] libunistring-0:1.1-8.fc41.x86 100% |  12.1 MiB/s | 544.8 KiB |  00m00s
[150/154] publicsuffix-list-dafsa-0:202 100% |   1.5 MiB/s |  58.3 KiB |  00m00s
[151/154] libssh-config-0:0.11.1-1.fc42 100% | 240.7 KiB/s |   9.4 KiB |  00m00s
[152/154] cyrus-sasl-lib-0:2.1.28-27.fc 100% |  16.9 MiB/s | 794.9 KiB |  00m00s
[153/154] libevent-0:2.1.12-14.fc41.x86 100% |   6.0 MiB/s | 257.5 KiB |  00m00s
[154/154] libtool-ltdl-0:2.5.4-1.fc42.x 100% | 875.8 KiB/s |  34.2 KiB |  00m00s
--------------------------------------------------------------------------------
[154/154] Total                         100% |  18.8 MiB/s |  52.0 MiB |  00m03s
Running transaction
Importing OpenPGP key 0x105EF944:
 UserID     : "Fedora (42) <fedora-42-primary@fedoraproject.org>"
 Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary
The key was successfully imported.
Importing OpenPGP key 0x105EF944:
 UserID     : "Fedora (42) <fedora-42-primary@fedoraproject.org>"
 Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary
The key was successfully imported.
Importing OpenPGP key 0xE99D6AD1:
 UserID     : "Fedora (41) <fedora-41-primary@fedoraproject.org>"
 Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary
The key was successfully imported.
Importing OpenPGP key 0x31645531:
 UserID     : "Fedora (43) <fedora-43-primary@fedoraproject.org>"
 Fingerprint: C6E7F081CF80E13146676E88829B606631645531
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary
The key was successfully imported.
[  1/156] Verify package files          100% | 770.0   B/s | 154.0   B |  00m00s
>>> Running pre-transaction scriptlet: filesystem-0:3.18-29.fc42.x86_64
>>> Finished pre-transaction scriptlet: filesystem-0:3.18-29.fc42.x86_64
>>> [RPM] /var/lib/mock/fedora-rawhide-x86_64-1734958332.919499/root/var/cache/d
[  2/156] Prepare transaction           100% |   1.8 KiB/s | 154.0   B |  00m00s
[  3/156] Installing libgcc-0:14.2.1-6. 100% | 132.9 MiB/s | 272.3 KiB |  00m00s
[  4/156] Installing libssh-config-0:0. 100% |   0.0   B/s | 816.0   B |  00m00s
[  5/156] Installing publicsuffix-list- 100% |  66.7 MiB/s |  68.3 KiB |  00m00s
[  6/156] Installing fedora-release-ide 100% |   0.0   B/s | 976.0   B |  00m00s
[  7/156] Installing fedora-repos-rawhi 100% |   2.4 MiB/s |   2.4 KiB |  00m00s
[  8/156] Installing fedora-gpg-keys-0: 100% |  18.7 MiB/s | 172.2 KiB |  00m00s
[  9/156] Installing fedora-repos-0:42- 100% |   0.0   B/s |   5.7 KiB |  00m00s
[ 10/156] Installing fedora-release-com 100% |  11.8 MiB/s |  24.1 KiB |  00m00s
[ 11/156] Installing fedora-release-0:4 100% |   0.0   B/s | 124.0   B |  00m00s
[ 12/156] Installing setup-0:2.15.0-5.f 100% |  47.3 MiB/s | 726.1 KiB |  00m00s
>>> [RPM] /etc/hosts created as /etc/hosts.rpmnew
[ 13/156] Installing filesystem-0:3.18- 100% |   1.6 MiB/s | 212.6 KiB |  00m00s
[ 14/156] Installing basesystem-0:11-21 100% |   0.0   B/s | 124.0   B |  00m00s
[ 15/156] Installing pkgconf-m4-0:2.3.0 100% |   0.0   B/s |  14.8 KiB |  00m00s
[ 16/156] Installing pcre2-syntax-0:10. 100% | 124.1 MiB/s | 254.1 KiB |  00m00s
[ 17/156] Installing ncurses-base-0:6.5 100% |  34.3 MiB/s | 351.7 KiB |  00m00s
[ 18/156] Installing glibc-minimal-lang 100% |   0.0   B/s | 124.0   B |  00m00s
[ 19/156] Installing ncurses-libs-0:6.5 100% | 137.0 MiB/s | 981.8 KiB |  00m00s
[ 20/156] Installing glibc-0:2.40.9000- 100% | 215.2 MiB/s |   6.7 MiB |  00m00s
[ 21/156] Installing bash-0:5.2.37-1.fc 100% | 281.7 MiB/s |   8.2 MiB |  00m00s
[ 22/156] Installing glibc-common-0:2.4 100% | 115.7 MiB/s |   1.0 MiB |  00m00s
[ 23/156] Installing glibc-gconv-extra- 100% | 149.6 MiB/s |   8.1 MiB |  00m00s
[ 24/156] Installing zlib-ng-compat-0:2 100% | 131.7 MiB/s | 134.9 KiB |  00m00s
[ 25/156] Installing bzip2-libs-0:1.0.8 100% |  79.9 MiB/s |  81.8 KiB |  00m00s
[ 26/156] Installing xz-libs-1:5.6.3-2. 100% | 214.3 MiB/s | 219.5 KiB |  00m00s
[ 27/156] Installing popt-0:1.19-7.fc41 100% |  35.0 MiB/s | 143.5 KiB |  00m00s
[ 28/156] Installing readline-0:8.2-11. 100% | 161.2 MiB/s | 495.3 KiB |  00m00s
[ 29/156] Installing libuuid-0:2.40.2-8 100% |  41.5 MiB/s |  42.5 KiB |  00m00s
[ 30/156] Installing libblkid-0:2.40.2- 100% | 257.5 MiB/s | 263.6 KiB |  00m00s
[ 31/156] Installing gmp-1:6.3.0-2.fc41 100% | 264.9 MiB/s | 813.7 KiB |  00m00s
[ 32/156] Installing libattr-0:2.5.2-4. 100% |  28.8 MiB/s |  29.5 KiB |  00m00s
[ 33/156] Installing libacl-0:2.3.2-2.f 100% |  39.8 MiB/s |  40.7 KiB |  00m00s
[ 34/156] Installing libxcrypt-0:4.4.36 100% | 132.8 MiB/s | 272.0 KiB |  00m00s
[ 35/156] Installing libstdc++-0:14.2.1 100% | 276.0 MiB/s |   2.8 MiB |  00m00s
[ 36/156] Installing libzstd-0:1.5.6-2. 100% | 194.6 MiB/s | 797.2 KiB |  00m00s
[ 37/156] Installing elfutils-libelf-0: 100% | 291.7 MiB/s |   1.2 MiB |  00m00s
[ 38/156] Installing libeconf-0:0.7.5-1 100% |  66.8 MiB/s |  68.4 KiB |  00m00s
[ 39/156] Installing gdbm-libs-1:1.23-7 100% | 120.7 MiB/s | 123.6 KiB |  00m00s
[ 40/156] Installing dwz-0:0.15-8.fc42. 100% | 146.8 MiB/s | 300.6 KiB |  00m00s
[ 41/156] Installing mpfr-0:4.2.1-5.fc4 100% | 203.5 MiB/s | 833.7 KiB |  00m00s
[ 42/156] Installing gawk-0:5.3.0-4.fc4 100% | 173.2 MiB/s |   1.7 MiB |  00m00s
[ 43/156] Installing unzip-0:6.0-65.fc4 100% | 130.8 MiB/s | 401.7 KiB |  00m00s
[ 44/156] Installing file-libs-0:5.45-8 100% | 473.3 MiB/s |   9.9 MiB |  00m00s
[ 45/156] Installing file-0:5.45-8.fc42 100% |   7.3 MiB/s | 105.2 KiB |  00m00s
[ 46/156] Installing crypto-policies-0: 100% |  14.5 MiB/s | 163.7 KiB |  00m00s
[ 47/156] Installing pcre2-0:10.44-1.fc 100% | 213.2 MiB/s | 654.9 KiB |  00m00s
[ 48/156] Installing grep-0:3.11-9.fc41 100% | 111.5 MiB/s |   1.0 MiB |  00m00s
[ 49/156] Installing xz-1:5.6.3-2.fc42. 100% | 123.7 MiB/s |   1.2 MiB |  00m00s
[ 50/156] Installing libcap-ng-0:0.8.5- 100% |  69.4 MiB/s |  71.0 KiB |  00m00s
[ 51/156] Installing audit-libs-0:4.0.2 100% | 108.5 MiB/s | 333.4 KiB |  00m00s
[ 52/156] Installing pam-libs-0:1.7.0-3 100% |  69.2 MiB/s | 141.8 KiB |  00m00s
[ 53/156] Installing libcap-0:2.71-1.fc 100% |  70.3 MiB/s | 215.8 KiB |  00m00s
[ 54/156] Installing systemd-libs-0:257 100% | 222.1 MiB/s |   2.2 MiB |  00m00s
[ 55/156] Installing libsmartcols-0:2.4 100% | 177.1 MiB/s | 181.4 KiB |  00m00s
[ 56/156] Installing lz4-libs-0:1.10.0- 100% | 143.1 MiB/s | 146.6 KiB |  00m00s
[ 57/156] Installing lua-libs-0:5.4.7-1 100% | 139.7 MiB/s | 286.2 KiB |  00m00s
[ 58/156] Installing libsepol-0:3.8-0.r 100% | 198.5 MiB/s | 813.3 KiB |  00m00s
[ 59/156] Installing libselinux-0:3.8-0 100% |  94.2 MiB/s | 192.9 KiB |  00m00s
[ 60/156] Installing sed-0:4.9-3.fc41.x 100% | 106.2 MiB/s | 869.7 KiB |  00m00s
[ 61/156] Installing findutils-1:4.10.0 100% | 185.8 MiB/s |   1.9 MiB |  00m00s
[ 62/156] Installing libmount-0:2.40.2- 100% | 174.3 MiB/s | 356.9 KiB |  00m00s
[ 63/156] Installing libcom_err-0:1.47. 100% |  66.7 MiB/s |  68.3 KiB |  00m00s
[ 64/156] Installing alternatives-0:1.3 100% |  64.8 MiB/s |  66.4 KiB |  00m00s
[ 65/156] Installing libffi-0:3.4.6-3.f 100% |  85.7 MiB/s |  87.8 KiB |  00m00s
[ 66/156] Installing libtasn1-0:4.19.0- 100% |  86.7 MiB/s | 177.5 KiB |  00m00s
[ 67/156] Installing p11-kit-0:0.25.5-4 100% | 147.7 MiB/s |   2.2 MiB |  00m00s
[ 68/156] Installing libunistring-0:1.1 100% | 247.2 MiB/s |   1.7 MiB |  00m00s
[ 69/156] Installing libidn2-0:2.3.7-2. 100% |  65.4 MiB/s | 335.1 KiB |  00m00s
[ 70/156] Installing libpsl-0:0.21.5-4. 100% |  79.7 MiB/s |  81.7 KiB |  00m00s
[ 71/156] Installing p11-kit-trust-0:0. 100% |  23.3 MiB/s | 405.5 KiB |  00m00s
[ 72/156] Installing util-linux-core-0: 100% | 117.5 MiB/s |   1.5 MiB |  00m00s
[ 73/156] Installing tar-2:1.35-4.fc41. 100% | 197.2 MiB/s |   3.0 MiB |  00m00s
[ 74/156] Installing libsemanage-0:3.8- 100% |  75.0 MiB/s | 307.1 KiB |  00m00s
[ 75/156] Installing shadow-utils-2:4.1 100% | 121.2 MiB/s |   4.1 MiB |  00m00s
[ 76/156] Installing zstd-0:1.5.6-2.fc4 100% | 281.9 MiB/s |   1.7 MiB |  00m00s
[ 77/156] Installing zip-0:3.0-42.fc42. 100% | 170.9 MiB/s | 699.8 KiB |  00m00s
[ 78/156] Installing gdbm-1:1.23-7.fc41 100% | 113.7 MiB/s | 465.8 KiB |  00m00s
[ 79/156] Installing cyrus-sasl-lib-0:2 100% | 256.2 MiB/s |   2.3 MiB |  00m00s
[ 80/156] Installing libfdisk-0:2.40.2- 100% | 177.7 MiB/s | 364.0 KiB |  00m00s
[ 81/156] Installing libxml2-0:2.12.8-2 100% | 214.0 MiB/s |   1.7 MiB |  00m00s
[ 82/156] Installing bzip2-0:1.0.8-19.f 100% |  48.9 MiB/s | 100.2 KiB |  00m00s
[ 83/156] Installing add-determinism-0: 100% | 270.1 MiB/s |   2.4 MiB |  00m00s
[ 84/156] Installing build-reproducibil 100% |   0.0   B/s |   1.0 KiB |  00m00s
[ 85/156] Installing sqlite-libs-0:3.47 100% | 239.0 MiB/s |   1.4 MiB |  00m00s
[ 86/156] Installing ed-0:1.20.2-2.fc41 100% |  72.8 MiB/s | 149.2 KiB |  00m00s
[ 87/156] Installing patch-0:2.7.6-25.f 100% | 131.0 MiB/s | 268.2 KiB |  00m00s
[ 88/156] Installing elfutils-default-y 100% | 170.2 KiB/s |   2.0 KiB |  00m00s
[ 89/156] Installing elfutils-libs-0:0. 100% | 162.3 MiB/s | 664.7 KiB |  00m00s
[ 90/156] Installing cpio-0:2.15-2.fc41 100% | 157.1 MiB/s |   1.1 MiB |  00m00s
[ 91/156] Installing diffutils-0:3.10-8 100% | 159.0 MiB/s |   1.6 MiB |  00m00s
[ 92/156] Installing libgomp-0:14.2.1-6 100% | 254.5 MiB/s | 521.2 KiB |  00m00s
[ 93/156] Installing json-c-0:0.18-1.fc 100% |  82.6 MiB/s |  84.6 KiB |  00m00s
[ 94/156] Installing keyutils-libs-0:1. 100% |  54.5 MiB/s |  55.8 KiB |  00m00s
[ 95/156] Installing libverto-0:0.3.2-9 100% |  30.5 MiB/s |  31.3 KiB |  00m00s
[ 96/156] Installing jansson-0:2.14-1.f 100% |  92.3 MiB/s |  94.5 KiB |  00m00s
[ 97/156] Installing libpkgconf-0:2.3.0 100% |  77.5 MiB/s |  79.3 KiB |  00m00s
[ 98/156] Installing pkgconf-0:2.3.0-1. 100% |  44.5 MiB/s |  91.1 KiB |  00m00s
[ 99/156] Installing pkgconf-pkg-config 100% |   1.7 MiB/s |   1.8 KiB |  00m00s
[100/156] Installing xxhash-libs-0:0.8. 100% |  87.7 MiB/s |  89.8 KiB |  00m00s
[101/156] Installing libbrotli-0:1.1.0- 100% | 205.0 MiB/s | 839.9 KiB |  00m00s
[102/156] Installing libnghttp2-0:1.64. 100% | 171.5 MiB/s | 175.6 KiB |  00m00s
[103/156] Installing libtool-ltdl-0:2.5 100% |  67.6 MiB/s |  69.2 KiB |  00m00s
[104/156] Installing rust-srpm-macros-0 100% |   5.4 MiB/s |   5.6 KiB |  00m00s
[105/156] Installing qt6-srpm-macros-0: 100% |   0.0   B/s | 732.0   B |  00m00s
[106/156] Installing qt5-srpm-macros-0: 100% |   0.0   B/s | 776.0   B |  00m00s
[107/156] Installing perl-srpm-macros-0 100% |   0.0   B/s |   1.1 KiB |  00m00s
[108/156] Installing package-notes-srpm 100% |   0.0   B/s |   2.0 KiB |  00m00s
[109/156] Installing openblas-srpm-macr 100% |   0.0   B/s | 392.0   B |  00m00s
[110/156] Installing ocaml-srpm-macros- 100% |   0.0   B/s |   2.2 KiB |  00m00s
[111/156] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[112/156] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
[113/156] Installing ghc-srpm-macros-0: 100% |   0.0   B/s |   1.0 KiB |  00m00s
[114/156] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[115/156] Installing ansible-srpm-macro 100% |  35.4 MiB/s |  36.2 KiB |  00m00s
[116/156] Installing coreutils-common-0 100% | 248.7 MiB/s |  11.2 MiB |  00m00s
[117/156] Installing openssl-libs-1:3.2 100% | 313.1 MiB/s |   7.8 MiB |  00m00s
[118/156] Installing coreutils-0:9.5-11 100% | 138.5 MiB/s |   5.4 MiB |  00m00s
[119/156] Installing ca-certificates-0: 100% |   1.2 MiB/s |   2.4 MiB |  00m02s
[120/156] Installing krb5-libs-0:1.21.3 100% | 177.3 MiB/s |   2.3 MiB |  00m00s
[121/156] Installing libarchive-0:3.7.7 100% | 182.5 MiB/s | 934.2 KiB |  00m00s
[122/156] Installing libtirpc-0:1.3.6-1 100% | 101.2 MiB/s | 207.3 KiB |  00m00s
[123/156] Installing gzip-0:1.13-2.fc41 100% |  96.3 MiB/s | 394.6 KiB |  00m00s
[124/156] Installing authselect-libs-0: 100% |  81.8 MiB/s | 837.2 KiB |  00m00s
[125/156] Installing cracklib-0:2.9.11- 100% |  34.9 MiB/s | 250.3 KiB |  00m00s
[126/156] Installing libpwquality-0:1.4 100% |  52.5 MiB/s | 430.1 KiB |  00m00s
[127/156] Installing libnsl2-0:2.0.1-2. 100% |  28.8 MiB/s |  59.1 KiB |  00m00s
[128/156] Installing pam-0:1.7.0-3.fc42 100% |  75.7 MiB/s |   1.9 MiB |  00m00s
[129/156] Installing libssh-0:0.11.1-1. 100% | 186.1 MiB/s | 571.7 KiB |  00m00s
[130/156] Installing rpm-sequoia-0:1.7. 100% | 258.2 MiB/s |   2.3 MiB |  00m00s
[131/156] Installing rpm-libs-0:4.20.0- 100% | 177.7 MiB/s | 727.7 KiB |  00m00s
[132/156] Installing rpm-build-libs-0:4 100% | 101.3 MiB/s | 207.5 KiB |  00m00s
[133/156] Installing libevent-0:2.1.12- 100% | 175.7 MiB/s | 899.5 KiB |  00m00s
[134/156] Installing openldap-0:2.6.8-6 100% | 159.0 MiB/s | 651.2 KiB |  00m00s
[135/156] Installing libcurl-0:8.11.1-2 100% | 199.8 MiB/s | 818.4 KiB |  00m00s
[136/156] Installing elfutils-debuginfo 100% |  40.9 MiB/s |  83.8 KiB |  00m00s
[137/156] Installing elfutils-0:0.192-7 100% | 220.4 MiB/s |   2.6 MiB |  00m00s
[138/156] Installing binutils-0:2.43.50 100% | 263.3 MiB/s |  25.8 MiB |  00m00s
[139/156] Installing gdb-minimal-0:15.2 100% | 295.9 MiB/s |  12.7 MiB |  00m00s
[140/156] Installing debugedit-0:5.1-2. 100% |  99.1 MiB/s | 203.0 KiB |  00m00s
[141/156] Installing curl-0:8.11.1-2.fc 100% |  22.2 MiB/s | 454.5 KiB |  00m00s
[142/156] Installing rpm-0:4.20.0-1.fc4 100% |  89.5 MiB/s |   2.5 MiB |  00m00s
[143/156] Installing efi-srpm-macros-0: 100% |  40.2 MiB/s |  41.2 KiB |  00m00s
[144/156] Installing lua-srpm-macros-0: 100% |   0.0   B/s |   1.9 KiB |  00m00s
[145/156] Installing zig-srpm-macros-0: 100% |   0.0   B/s |   1.7 KiB |  00m00s
[146/156] Installing fonts-srpm-macros- 100% |  55.7 MiB/s |  57.0 KiB |  00m00s
[147/156] Installing forge-srpm-macros- 100% |  39.3 MiB/s |  40.3 KiB |  00m00s
[148/156] Installing go-srpm-macros-0:3 100% |  60.5 MiB/s |  62.0 KiB |  00m00s
[149/156] Installing python-srpm-macros 100% |  50.9 MiB/s |  52.2 KiB |  00m00s
[150/156] Installing redhat-rpm-config- 100% |  62.9 MiB/s | 193.2 KiB |  00m00s
[151/156] Installing rpm-build-0:4.20.0 100% |  49.5 MiB/s | 202.9 KiB |  00m00s
[152/156] Installing pyproject-srpm-mac 100% |   1.2 MiB/s |   2.5 KiB |  00m00s
[153/156] Installing util-linux-0:2.40. 100% |  84.4 MiB/s |   3.7 MiB |  00m00s
[154/156] Installing authselect-0:1.5.0 100% |  39.5 MiB/s | 161.9 KiB |  00m00s
[155/156] Installing which-0:2.21-42.fc 100% |  40.2 MiB/s |  82.4 KiB |  00m00s
[156/156] Installing info-0:7.1.1-2.fc4 100% | 132.5 KiB/s | 362.2 KiB |  00m03s
Warning: skipped OpenPGP checks for 1 package from repository: copr_base
Complete!
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: add-determinism-0.4.3-1.fc42.x86_64
alternatives-1.31-1.fc42.x86_64
ansible-srpm-macros-1-16.fc41.noarch
audit-libs-4.0.2-1.fc41.x86_64
authselect-1.5.0-8.fc42.x86_64
authselect-libs-1.5.0-8.fc42.x86_64
basesystem-11-21.fc41.noarch
bash-5.2.37-1.fc42.x86_64
binutils-2.43.50-9.fc42.x86_64
build-reproducibility-srpm-macros-0.4.3-1.fc42.noarch
bzip2-1.0.8-19.fc41.x86_64
bzip2-libs-1.0.8-19.fc41.x86_64
ca-certificates-2024.2.69_v8.0.401-3.fc42.noarch
coreutils-9.5-11.fc42.x86_64
coreutils-common-9.5-11.fc42.x86_64
cpio-2.15-2.fc41.x86_64
cracklib-2.9.11-6.fc41.x86_64
crypto-policies-20241128-1.gitbb7b0b0.fc42.noarch
curl-8.11.1-2.fc42.x86_64
cyrus-sasl-lib-2.1.28-27.fc41.x86_64
debugedit-5.1-2.fc42.x86_64
diffutils-3.10-8.fc41.x86_64
dwz-0.15-8.fc42.x86_64
ed-1.20.2-2.fc41.x86_64
efi-srpm-macros-5-13.fc42.noarch
elfutils-0.192-7.fc42.x86_64
elfutils-debuginfod-client-0.192-7.fc42.x86_64
elfutils-default-yama-scope-0.192-7.fc42.noarch
elfutils-libelf-0.192-7.fc42.x86_64
elfutils-libs-0.192-7.fc42.x86_64
fedora-gpg-keys-42-0.3.noarch
fedora-release-42-0.11.noarch
fedora-release-common-42-0.11.noarch
fedora-release-identity-basic-42-0.11.noarch
fedora-repos-42-0.3.noarch
fedora-repos-rawhide-42-0.3.noarch
file-5.45-8.fc42.x86_64
file-libs-5.45-8.fc42.x86_64
filesystem-3.18-29.fc42.x86_64
findutils-4.10.0-4.fc41.x86_64
fonts-srpm-macros-2.0.5-17.fc41.noarch
forge-srpm-macros-0.4.0-1.fc42.noarch
fpc-srpm-macros-1.3-13.fc41.noarch
gawk-5.3.0-4.fc41.x86_64
gdb-minimal-15.2-4.fc42.x86_64
gdbm-1.23-7.fc41.x86_64
gdbm-libs-1.23-7.fc41.x86_64
ghc-srpm-macros-1.9.2-1.fc42.noarch
glibc-2.40.9000-24.fc42.x86_64
glibc-common-2.40.9000-24.fc42.x86_64
glibc-gconv-extra-2.40.9000-24.fc42.x86_64
glibc-minimal-langpack-2.40.9000-24.fc42.x86_64
gmp-6.3.0-2.fc41.x86_64
gnat-srpm-macros-6-6.fc41.noarch
go-srpm-macros-3.6.0-5.fc42.noarch
gpg-pubkey-105ef944-65ca83d1
gpg-pubkey-31645531-66b6dccf
gpg-pubkey-e99d6ad1-64d2612c
grep-3.11-9.fc41.x86_64
gzip-1.13-2.fc41.x86_64
info-7.1.1-2.fc42.x86_64
jansson-2.14-1.fc42.x86_64
json-c-0.18-1.fc42.x86_64
kernel-srpm-macros-1.0-24.fc41.noarch
keyutils-libs-1.6.3-4.fc41.x86_64
krb5-libs-1.21.3-3.fc42.x86_64
libacl-2.3.2-2.fc41.x86_64
libarchive-3.7.7-1.fc42.x86_64
libattr-2.5.2-4.fc41.x86_64
libblkid-2.40.2-8.fc42.x86_64
libbrotli-1.1.0-5.fc41.x86_64
libcap-2.71-1.fc42.x86_64
libcap-ng-0.8.5-3.fc41.x86_64
libcom_err-1.47.1-6.fc42.x86_64
libcurl-8.11.1-2.fc42.x86_64
libeconf-0.7.5-1.fc42.x86_64
libevent-2.1.12-14.fc41.x86_64
libfdisk-2.40.2-8.fc42.x86_64
libffi-3.4.6-3.fc42.x86_64
libgcc-14.2.1-6.fc42.x86_64
libgomp-14.2.1-6.fc42.x86_64
libidn2-2.3.7-2.fc41.x86_64
libmount-2.40.2-8.fc42.x86_64
libnghttp2-1.64.0-1.fc42.x86_64
libnsl2-2.0.1-2.fc41.x86_64
libpkgconf-2.3.0-1.fc42.x86_64
libpsl-0.21.5-4.fc41.x86_64
libpwquality-1.4.5-11.fc41.x86_64
libselinux-3.8-0.rc3.1.fc42.x86_64
libsemanage-3.8-0.rc3.1.fc42.x86_64
libsepol-3.8-0.rc3.1.fc42.x86_64
libsmartcols-2.40.2-8.fc42.x86_64
libssh-0.11.1-1.fc42.x86_64
libssh-config-0.11.1-1.fc42.noarch
libstdc++-14.2.1-6.fc42.x86_64
libtasn1-4.19.0-9.fc41.x86_64
libtirpc-1.3.6-1.fc42.x86_64
libtool-ltdl-2.5.4-1.fc42.x86_64
libunistring-1.1-8.fc41.x86_64
libuuid-2.40.2-8.fc42.x86_64
libverto-0.3.2-9.fc41.x86_64
libxcrypt-4.4.36-12.fc42.x86_64
libxml2-2.12.8-2.fc41.x86_64
libzstd-1.5.6-2.fc41.x86_64
lua-libs-5.4.7-1.fc42.x86_64
lua-srpm-macros-1-14.fc41.noarch
lz4-libs-1.10.0-1.fc41.x86_64
mpfr-4.2.1-5.fc41.x86_64
ncurses-base-6.5-2.20240629.fc41.noarch
ncurses-libs-6.5-2.20240629.fc41.x86_64
ocaml-srpm-macros-10-3.fc41.noarch
openblas-srpm-macros-2-18.fc41.noarch
openldap-2.6.8-6.fc42.x86_64
openssl-libs-3.2.2-8.fc42.x86_64
p11-kit-0.25.5-4.fc42.x86_64
p11-kit-trust-0.25.5-4.fc42.x86_64
package-notes-srpm-macros-0.5-12.fc41.noarch
pam-1.7.0-3.fc42.x86_64
pam-libs-1.7.0-3.fc42.x86_64
patch-2.7.6-25.fc41.x86_64
pcre2-10.44-1.fc41.1.x86_64
pcre2-syntax-10.44-1.fc41.1.noarch
perl-srpm-macros-1-56.fc41.noarch
pkgconf-2.3.0-1.fc42.x86_64
pkgconf-m4-2.3.0-1.fc42.noarch
pkgconf-pkg-config-2.3.0-1.fc42.x86_64
popt-1.19-7.fc41.x86_64
publicsuffix-list-dafsa-20240107-4.fc41.noarch
pyproject-srpm-macros-1.16.3-1.fc42.noarch
python-srpm-macros-3.13-3.fc41.noarch
qt5-srpm-macros-5.15.15-1.fc42.noarch
qt6-srpm-macros-6.8.1-4.fc42.noarch
readline-8.2-11.fc42.x86_64
redhat-rpm-config-296-1.fc42.noarch
rpm-4.20.0-1.fc42.x86_64
rpm-build-4.20.0-1.fc42.x86_64
rpm-build-libs-4.20.0-1.fc42.x86_64
rpm-libs-4.20.0-1.fc42.x86_64
rpm-sequoia-1.7.0-3.fc42.x86_64
rust-srpm-macros-26.3-3.fc42.noarch
sed-4.9-3.fc41.x86_64
setup-2.15.0-5.fc41.noarch
shadow-utils-4.17.0~rc1-1.fc42.x86_64
sqlite-libs-3.47.2-1.fc42.x86_64
systemd-libs-257.1-1.fc42.x86_64
tar-1.35-4.fc41.x86_64
unzip-6.0-65.fc42.x86_64
util-linux-2.40.2-8.fc42.x86_64
util-linux-core-2.40.2-8.fc42.x86_64
which-2.21-42.fc41.x86_64
xxhash-libs-0.8.2-4.fc42.x86_64
xz-5.6.3-2.fc42.x86_64
xz-libs-5.6.3-2.fc42.x86_64
zig-srpm-macros-1-3.fc41.noarch
zip-3.0-42.fc42.x86_64
zlib-ng-compat-2.2.2-1.fc42.x86_64
zstd-1.5.6-2.fc41.x86_64
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1721260800
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-20.fc42.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1734958332.919499/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-81jcjq50/mmseq/mmseq.spec) Config(child) 0 minutes 28 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-20.fc42.src.rpm)  Config(fedora-rawhide-x86_64)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1734958332.919499/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-x86_64-bootstrap-1734958332.919499/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-x86_64-1734958332.919499/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.20.0-1.fc42.x86_64
  rpm-sequoia-1.7.0-3.fc42.x86_64
  dnf5-5.2.8.1-2.fc42.x86_64
  dnf5-plugins-5.2.8.1-2.fc42.x86_64
Finish: chroot init
Start: build phase for mmseq-1.0.11-20.fc42.src.rpm
Start: build setup for mmseq-1.0.11-20.fc42.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1721260800
Wrote: /builddir/build/SRPMS/mmseq-1.0.11-20.fc42.src.rpm
Updating and loading repositories:
 Copr repository                        100% |  49.3 KiB/s |   1.5 KiB |  00m00s
 fedora                                 100% |   1.1 MiB/s |  27.5 KiB |  00m00s
Repositories loaded.
Package                      Arch   Version              Repository      Size
Installing:
 armadillo-devel             x86_64 12.8.1-5.fc42        fedora       7.3 MiB
 boost-devel                 x86_64 1.83.0-9.fc42        fedora     143.0 MiB
 flexiblas-devel             x86_64 3.4.4-3.fc41         fedora       4.8 MiB
 gcc-c++                     x86_64 14.2.1-6.fc42        fedora      38.1 MiB
 gsl-devel                   x86_64 2.7.1-11.fc41        fedora       1.6 MiB
 htslib-devel                x86_64 1.15.1-6.fc41        fedora     411.0 KiB
 make                        x86_64 1:4.4.1-9.fc42       fedora       1.8 MiB
 perl-generators             noarch 1.16-6.fc41          fedora      21.8 KiB
 zlib-ng-compat-devel        x86_64 2.2.2-1.fc42         fedora     106.8 KiB
Installing dependencies:
 SuperLU                     x86_64 7.0.0-1.fc42         fedora     490.3 KiB
 SuperLU-devel               x86_64 7.0.0-1.fc42         fedora     103.4 KiB
 annobin-docs                noarch 12.79-1.fc42         fedora      98.6 KiB
 annobin-plugin-gcc          x86_64 12.79-1.fc42         fedora     989.3 KiB
 armadillo                   x86_64 12.8.1-5.fc42        fedora      82.3 KiB
 arpack                      x86_64 3.9.1-4.fc41         fedora     650.0 KiB
 arpack-devel                x86_64 3.9.1-4.fc41         fedora      69.1 KiB
 autoconf                    noarch 2.72-3.fc41          fedora       2.8 MiB
 automake                    noarch 1.17-1.fc42          fedora       1.8 MiB
 boost                       x86_64 1.83.0-9.fc42        fedora       1.3 KiB
 boost-atomic                x86_64 1.83.0-9.fc42        fedora      23.7 KiB
 boost-chrono                x86_64 1.83.0-9.fc42        fedora      39.8 KiB
 boost-container             x86_64 1.83.0-9.fc42        fedora      67.7 KiB
 boost-context               x86_64 1.83.0-9.fc42        fedora      15.5 KiB
 boost-contract              x86_64 1.83.0-9.fc42        fedora      99.8 KiB
 boost-coroutine             x86_64 1.83.0-9.fc42        fedora      23.8 KiB
 boost-date-time             x86_64 1.83.0-9.fc42        fedora      15.3 KiB
 boost-fiber                 x86_64 1.83.0-9.fc42        fedora      79.8 KiB
 boost-filesystem            x86_64 1.83.0-9.fc42        fedora     144.0 KiB
 boost-graph                 x86_64 1.83.0-9.fc42        fedora     332.2 KiB
 boost-iostreams             x86_64 1.83.0-9.fc42        fedora      91.7 KiB
 boost-json                  x86_64 1.83.0-9.fc42        fedora     328.0 KiB
 boost-locale                x86_64 1.83.0-9.fc42        fedora     592.3 KiB
 boost-log                   x86_64 1.83.0-9.fc42        fedora       1.4 MiB
 boost-math                  x86_64 1.83.0-9.fc42        fedora     647.4 KiB
 boost-nowide                x86_64 1.83.0-9.fc42        fedora      27.7 KiB
 boost-numpy3                x86_64 1.83.0-9.fc42        fedora      55.7 KiB
 boost-program-options       x86_64 1.83.0-9.fc42        fedora     263.8 KiB
 boost-python3               x86_64 1.83.0-9.fc42        fedora     247.2 KiB
 boost-random                x86_64 1.83.0-9.fc42        fedora      27.8 KiB
 boost-regex                 x86_64 1.83.0-9.fc42        fedora     267.7 KiB
 boost-serialization         x86_64 1.83.0-9.fc42        fedora     426.2 KiB
 boost-stacktrace            x86_64 1.83.0-9.fc42        fedora      64.2 KiB
 boost-system                x86_64 1.83.0-9.fc42        fedora      15.3 KiB
 boost-test                  x86_64 1.83.0-9.fc42        fedora     622.6 KiB
 boost-thread                x86_64 1.83.0-9.fc42        fedora     131.9 KiB
 boost-timer                 x86_64 1.83.0-9.fc42        fedora      23.7 KiB
 boost-type_erasure          x86_64 1.83.0-9.fc42        fedora      55.8 KiB
 boost-wave                  x86_64 1.83.0-9.fc42        fedora     624.5 KiB
 cmake-filesystem            x86_64 3.31.2-1.fc42        fedora       0.0   B
 cpp                         x86_64 14.2.1-6.fc42        fedora      35.0 MiB
 emacs-filesystem            noarch 1:30.0-3.fc41        fedora       0.0   B
 expat                       x86_64 2.6.4-1.fc42         fedora     285.5 KiB
 flexiblas                   x86_64 3.4.4-3.fc41         fedora      48.5 KiB
 flexiblas-netlib            x86_64 3.4.4-3.fc41         fedora      10.7 MiB
 flexiblas-netlib64          x86_64 3.4.4-3.fc41         fedora      10.8 MiB
 flexiblas-openblas-openmp   x86_64 3.4.4-3.fc41         fedora      43.3 KiB
 flexiblas-openblas-openmp64 x86_64 3.4.4-3.fc41         fedora      43.3 KiB
 gcc                         x86_64 14.2.1-6.fc42        fedora     104.3 MiB
 gcc-gfortran                x86_64 14.2.1-6.fc42        fedora      37.2 MiB
 gcc-plugin-annobin          x86_64 14.2.1-6.fc42        fedora      57.6 KiB
 glibc-devel                 x86_64 2.40.9000-24.fc42    fedora       2.3 MiB
 groff-base                  x86_64 1.23.0-7.fc41        fedora       3.8 MiB
 gsl                         x86_64 2.7.1-11.fc41        fedora       3.3 MiB
 hdf5                        x86_64 1.14.5-1.fc42        fedora       7.1 MiB
 hdf5-devel                  x86_64 1.14.5-1.fc42        fedora       3.3 MiB
 htslib                      x86_64 1.15.1-6.fc41        fedora       1.1 MiB
 kernel-headers              x86_64 6.13.0-0.rc3.29.fc42 fedora       6.5 MiB
 libaec                      x86_64 1.1.3-1.fc42         fedora      98.1 KiB
 libaec-devel                x86_64 1.1.3-1.fc42         fedora      12.5 KiB
 libb2                       x86_64 0.98.1-12.fc41       fedora      42.2 KiB
 libgfortran                 x86_64 14.2.1-6.fc42        fedora       3.0 MiB
 libicu                      x86_64 76.1-1.fc42          fedora      36.2 MiB
 libicu-devel                x86_64 76.1-1.fc42          fedora       5.0 MiB
 libmpc                      x86_64 1.3.1-6.fc41         fedora     164.7 KiB
 libquadmath                 x86_64 14.2.1-6.fc42        fedora     325.9 KiB
 libquadmath-devel           x86_64 14.2.1-6.fc42        fedora      21.9 KiB
 libstdc++-devel             x86_64 14.2.1-6.fc42        fedora      15.4 MiB
 libxcrypt-devel             x86_64 4.4.36-12.fc42       fedora      30.5 KiB
 m4                          x86_64 1.4.19-10.fc41       fedora     592.9 KiB
 metis                       x86_64 5.1.0.3-6.fc41       fedora     985.2 KiB
 mpdecimal                   x86_64 2.5.1-16.fc41        fedora     204.9 KiB
 ncurses                     x86_64 6.5-2.20240629.fc41  fedora     627.3 KiB
 openblas                    x86_64 0.3.28-2.fc42        fedora     106.6 KiB
 openblas-openmp             x86_64 0.3.28-2.fc42        fedora      39.3 MiB
 openblas-openmp64           x86_64 0.3.28-2.fc42        fedora      39.5 MiB
 perl-AutoLoader             noarch 5.74-512.fc42        fedora      20.5 KiB
 perl-B                      x86_64 1.89-512.fc42        fedora     498.0 KiB
 perl-Carp                   noarch 1.54-511.fc41        fedora      46.6 KiB
 perl-Class-Struct           noarch 0.68-512.fc42        fedora      25.4 KiB
 perl-Data-Dumper            x86_64 2.189-512.fc41       fedora     111.7 KiB
 perl-Digest                 noarch 1.20-511.fc41        fedora      35.3 KiB
 perl-Digest-MD5             x86_64 2.59-5.fc41          fedora      59.8 KiB
 perl-DynaLoader             x86_64 1.56-512.fc42        fedora      32.1 KiB
 perl-Encode                 x86_64 4:3.21-511.fc41      fedora       4.7 MiB
 perl-Errno                  x86_64 1.38-512.fc42        fedora       8.4 KiB
 perl-Exporter               noarch 5.78-511.fc41        fedora      54.3 KiB
 perl-Fcntl                  x86_64 1.18-512.fc42        fedora      49.0 KiB
 perl-Fedora-VSP             noarch 0.001-35.fc41        fedora      39.7 KiB
 perl-File-Basename          noarch 2.86-512.fc42        fedora      14.0 KiB
 perl-File-Compare           noarch 1.100.800-512.fc42   fedora       5.6 KiB
 perl-File-Copy              noarch 2.41-512.fc42        fedora      19.6 KiB
 perl-File-Find              noarch 1.44-512.fc42        fedora      41.9 KiB
 perl-File-Path              noarch 2.18-511.fc41        fedora      63.5 KiB
 perl-File-Temp              noarch 1:0.231.100-511.fc41 fedora     162.3 KiB
 perl-File-stat              noarch 1.14-512.fc42        fedora      12.5 KiB
 perl-FileHandle             noarch 2.05-512.fc42        fedora       9.3 KiB
 perl-Getopt-Long            noarch 1:2.58-2.fc41        fedora     144.5 KiB
 perl-Getopt-Std             noarch 1.14-512.fc42        fedora      11.2 KiB
 perl-HTTP-Tiny              noarch 0.090-1.fc42         fedora     154.4 KiB
 perl-IO                     x86_64 1.55-512.fc42        fedora     151.1 KiB
 perl-IO-Socket-IP           noarch 0.43-1.fc42          fedora     100.3 KiB
 perl-IO-Socket-SSL          noarch 2.089-1.fc42         fedora     703.3 KiB
 perl-IPC-Open3              noarch 1.22-512.fc42        fedora      22.5 KiB
 perl-MIME-Base32            noarch 1.303-21.fc41        fedora      30.7 KiB
 perl-MIME-Base64            x86_64 3.16-511.fc41        fedora      46.1 KiB
 perl-Net-SSLeay             x86_64 1.94-7.fc41          fedora       1.3 MiB
 perl-POSIX                  x86_64 2.20-512.fc42        fedora     235.1 KiB
 perl-PathTools              x86_64 3.91-511.fc41        fedora     180.0 KiB
 perl-Pod-Escapes            noarch 1:1.07-511.fc41      fedora      24.9 KiB
 perl-Pod-Perldoc            noarch 3.28.01-512.fc41     fedora     163.7 KiB
 perl-Pod-Simple             noarch 1:3.45-511.fc41      fedora     560.9 KiB
 perl-Pod-Usage              noarch 4:2.03-511.fc41      fedora      84.8 KiB
 perl-Scalar-List-Utils      x86_64 5:1.68-1.fc42        fedora     148.9 KiB
 perl-SelectSaver            noarch 1.02-512.fc42        fedora       2.2 KiB
 perl-Socket                 x86_64 4:2.038-511.fc41     fedora     124.0 KiB
 perl-Storable               x86_64 1:3.32-511.fc41      fedora     232.4 KiB
 perl-Symbol                 noarch 1.09-512.fc42        fedora       6.8 KiB
 perl-Term-ANSIColor         noarch 5.01-512.fc41        fedora      97.5 KiB
 perl-Term-Cap               noarch 1.18-511.fc41        fedora      29.3 KiB
 perl-Text-ParseWords        noarch 3.31-511.fc41        fedora      13.6 KiB
 perl-Text-Tabs+Wrap         noarch 2024.001-511.fc41    fedora      22.6 KiB
 perl-Thread-Queue           noarch 3.14-511.fc41        fedora      28.9 KiB
 perl-Time-Local             noarch 2:1.350-511.fc41     fedora      69.0 KiB
 perl-URI                    noarch 5.31-1.fc42          fedora     257.0 KiB
 perl-base                   noarch 2.27-512.fc42        fedora      12.5 KiB
 perl-constant               noarch 1.33-512.fc41        fedora      26.2 KiB
 perl-if                     noarch 0.61.000-512.fc42    fedora       5.8 KiB
 perl-interpreter            x86_64 4:5.40.0-512.fc42    fedora     122.3 KiB
 perl-libnet                 noarch 3.15-512.fc41        fedora     289.4 KiB
 perl-libs                   x86_64 4:5.40.0-512.fc42    fedora       9.9 MiB
 perl-locale                 noarch 1.12-512.fc42        fedora       6.5 KiB
 perl-macros                 noarch 4:5.40.0-512.fc42    fedora       5.5 KiB
 perl-mro                    x86_64 1.29-512.fc42        fedora      45.6 KiB
 perl-overload               noarch 1.37-512.fc42        fedora      71.5 KiB
 perl-overloading            noarch 0.02-512.fc42        fedora       4.8 KiB
 perl-parent                 noarch 1:0.244-1.fc42       fedora      10.3 KiB
 perl-podlators              noarch 1:6.0.2-2.fc41       fedora     317.5 KiB
 perl-threads                x86_64 1:2.40-511.fc41      fedora     115.1 KiB
 perl-threads-shared         x86_64 1.69-511.fc41        fedora      83.7 KiB
 perl-vars                   noarch 1.05-512.fc42        fedora       3.9 KiB
 pyproject-rpm-macros        noarch 1.16.3-1.fc42        fedora     113.7 KiB
 python-pip-wheel            noarch 24.3.1-1.fc42        fedora       1.2 MiB
 python-rpm-macros           noarch 3.13-3.fc41          fedora      22.1 KiB
 python3                     x86_64 3.13.1-2.fc42        fedora      30.6 KiB
 python3-devel               x86_64 3.13.1-2.fc42        fedora       1.8 MiB
 python3-libs                x86_64 3.13.1-2.fc42        fedora      39.8 MiB
 python3-numpy               x86_64 1:2.2.1-1.fc42       fedora      40.8 MiB
 python3-numpy-f2py          x86_64 1:2.2.1-1.fc42       fedora       2.0 MiB
 python3-packaging           noarch 24.2-2.fc42          fedora     555.7 KiB
 python3-rpm-generators      noarch 14-11.fc41           fedora      81.7 KiB
 python3-rpm-macros          noarch 3.13-3.fc41          fedora       6.4 KiB
 tzdata                      noarch 2024b-1.fc42         fedora       1.6 MiB

Transaction Summary:
 Installing:       162 packages

Total size of inbound packages is 168 MiB. Need to download 168 MiB.
After this operation, 688 MiB extra will be used (install 688 MiB, remove 0 B).
[  1/162] perl-generators-0:1.16-6.fc41 100% |  65.0 KiB/s |  16.5 KiB |  00m00s
[  2/162] make-1:4.4.1-9.fc42.x86_64    100% | 950.3 KiB/s | 586.3 KiB |  00m01s
[  3/162] flexiblas-devel-0:3.4.4-3.fc4 100% |   1.1 MiB/s | 121.8 KiB |  00m00s
[  4/162] armadillo-devel-0:12.8.1-5.fc 100% |   2.7 MiB/s |   2.1 MiB |  00m01s
[  5/162] gsl-devel-0:2.7.1-11.fc41.x86 100% |   6.0 MiB/s | 653.0 KiB |  00m00s
[  6/162] htslib-devel-0:1.15.1-6.fc41. 100% |   1.1 MiB/s | 104.2 KiB |  00m00s
[  7/162] zlib-ng-compat-devel-0:2.2.2- 100% | 477.0 KiB/s |  38.2 KiB |  00m00s
[  8/162] perl-Fedora-VSP-0:0.001-35.fc 100% | 258.7 KiB/s |  23.0 KiB |  00m00s
[  9/162] boost-devel-0:1.83.0-9.fc42.x 100% |  14.6 MiB/s |  14.2 MiB |  00m01s
[ 10/162] perl-File-Basename-0:2.86-512 100% | 216.8 KiB/s |  17.1 KiB |  00m00s
[ 11/162] gcc-c++-0:14.2.1-6.fc42.x86_6 100% |  25.8 MiB/s |  14.2 MiB |  00m01s
[ 12/162] perl-interpreter-4:5.40.0-512 100% | 903.7 KiB/s |  72.3 KiB |  00m00s
[ 13/162] perl-macros-4:5.40.0-512.fc42 100% | 139.6 KiB/s |  12.3 KiB |  00m00s
[ 14/162] armadillo-0:12.8.1-5.fc42.x86 100% | 325.3 KiB/s |  30.6 KiB |  00m00s
[ 15/162] boost-0:1.83.0-9.fc42.x86_64  100% | 162.5 KiB/s |  12.8 KiB |  00m00s
[ 16/162] boost-numpy3-0:1.83.0-9.fc42. 100% | 334.7 KiB/s |  26.4 KiB |  00m00s
[ 17/162] libicu-devel-0:76.1-1.fc42.x8 100% |   8.8 MiB/s | 792.1 KiB |  00m00s
[ 18/162] libquadmath-devel-0:14.2.1-6. 100% | 577.5 KiB/s |  46.2 KiB |  00m00s
[ 19/162] flexiblas-0:3.4.4-3.fc41.x86_ 100% | 316.1 KiB/s |  25.3 KiB |  00m00s
[ 20/162] flexiblas-netlib-0:3.4.4-3.fc 100% |  29.0 MiB/s |   3.2 MiB |  00m00s
[ 21/162] flexiblas-netlib64-0:3.4.4-3. 100% |  21.9 MiB/s |   3.1 MiB |  00m00s
[ 22/162] libmpc-0:1.3.1-6.fc41.x86_64  100% | 889.0 KiB/s |  71.1 KiB |  00m00s
[ 23/162] automake-0:1.17-1.fc42.noarch 100% |   7.9 MiB/s | 715.6 KiB |  00m00s
[ 24/162] gsl-0:2.7.1-11.fc41.x86_64    100% |  10.1 MiB/s |   1.1 MiB |  00m00s
[ 25/162] htslib-0:1.15.1-6.fc41.x86_64 100% |   4.8 MiB/s | 494.6 KiB |  00m00s
[ 26/162] cmake-filesystem-0:3.31.2-1.f 100% | 223.1 KiB/s |  17.6 KiB |  00m00s
[ 27/162] perl-Carp-0:1.54-511.fc41.noa 100% | 361.1 KiB/s |  28.9 KiB |  00m00s
[ 28/162] perl-Exporter-0:5.78-511.fc41 100% | 391.3 KiB/s |  30.9 KiB |  00m00s
[ 29/162] perl-libs-4:5.40.0-512.fc42.x 100% |  21.0 MiB/s |   2.3 MiB |  00m00s
[ 30/162] arpack-0:3.9.1-4.fc41.x86_64  100% |   2.1 MiB/s | 210.4 KiB |  00m00s
[ 31/162] boost-atomic-0:1.83.0-9.fc42. 100% | 218.1 KiB/s |  17.5 KiB |  00m00s
[ 32/162] boost-chrono-0:1.83.0-9.fc42. 100% | 289.5 KiB/s |  23.2 KiB |  00m00s
[ 33/162] boost-container-0:1.83.0-9.fc 100% | 464.3 KiB/s |  37.1 KiB |  00m00s
[ 34/162] boost-context-0:1.83.0-9.fc42 100% | 186.1 KiB/s |  14.7 KiB |  00m00s
[ 35/162] boost-contract-0:1.83.0-9.fc4 100% | 527.9 KiB/s |  41.7 KiB |  00m00s
[ 36/162] boost-coroutine-0:1.83.0-9.fc 100% | 225.0 KiB/s |  17.8 KiB |  00m00s
[ 37/162] boost-date-time-0:1.83.0-9.fc 100% | 171.6 KiB/s |  13.6 KiB |  00m00s
[ 38/162] boost-fiber-0:1.83.0-9.fc42.x 100% | 488.5 KiB/s |  38.6 KiB |  00m00s
[ 39/162] boost-filesystem-0:1.83.0-9.f 100% | 810.0 KiB/s |  64.8 KiB |  00m00s
[ 40/162] boost-graph-0:1.83.0-9.fc42.x 100% |   1.7 MiB/s | 141.3 KiB |  00m00s
[ 41/162] gcc-0:14.2.1-6.fc42.x86_64    100% |  37.3 MiB/s |  37.0 MiB |  00m01s
[ 42/162] boost-iostreams-0:1.83.0-9.fc 100% | 380.1 KiB/s |  37.2 KiB |  00m00s
[ 43/162] boost-json-0:1.83.0-9.fc42.x8 100% |   1.7 MiB/s | 138.6 KiB |  00m00s
[ 44/162] boost-locale-0:1.83.0-9.fc42. 100% |   2.3 MiB/s | 195.2 KiB |  00m00s
[ 45/162] boost-log-0:1.83.0-9.fc42.x86 100% |   4.9 MiB/s | 440.7 KiB |  00m00s
[ 46/162] boost-math-0:1.83.0-9.fc42.x8 100% |   2.4 MiB/s | 199.3 KiB |  00m00s
[ 47/162] boost-nowide-0:1.83.0-9.fc42. 100% | 232.7 KiB/s |  18.4 KiB |  00m00s
[ 48/162] boost-program-options-0:1.83. 100% |   1.2 MiB/s |  99.3 KiB |  00m00s
[ 49/162] boost-python3-0:1.83.0-9.fc42 100% |   1.1 MiB/s |  89.3 KiB |  00m00s
[ 50/162] boost-random-0:1.83.0-9.fc42. 100% | 269.2 KiB/s |  21.3 KiB |  00m00s
[ 51/162] boost-regex-0:1.83.0-9.fc42.x 100% |   1.3 MiB/s | 103.2 KiB |  00m00s
[ 52/162] boost-serialization-0:1.83.0- 100% |   1.4 MiB/s | 117.9 KiB |  00m00s
[ 53/162] boost-stacktrace-0:1.83.0-9.f 100% | 326.8 KiB/s |  25.8 KiB |  00m00s
[ 54/162] boost-system-0:1.83.0-9.fc42. 100% | 171.7 KiB/s |  13.6 KiB |  00m00s
[ 55/162] boost-test-0:1.83.0-9.fc42.x8 100% |   2.6 MiB/s | 218.5 KiB |  00m00s
[ 56/162] boost-thread-0:1.83.0-9.fc42. 100% | 700.2 KiB/s |  56.0 KiB |  00m00s
[ 57/162] boost-timer-0:1.83.0-9.fc42.x 100% | 243.0 KiB/s |  19.2 KiB |  00m00s
[ 58/162] boost-type_erasure-0:1.83.0-9 100% | 383.8 KiB/s |  30.3 KiB |  00m00s
[ 59/162] boost-wave-0:1.83.0-9.fc42.x8 100% |   2.3 MiB/s | 190.3 KiB |  00m00s
[ 60/162] flexiblas-openblas-openmp-0:3 100% | 215.6 KiB/s |  17.2 KiB |  00m00s
[ 61/162] libgfortran-0:14.2.1-6.fc42.x 100% |  10.0 MiB/s | 939.2 KiB |  00m00s
[ 62/162] python3-numpy-1:2.2.1-1.fc42. 100% |  29.9 MiB/s |   7.9 MiB |  00m00s
[ 63/162] libicu-0:76.1-1.fc42.x86_64   100% |  37.3 MiB/s |  10.6 MiB |  00m00s
[ 64/162] libquadmath-0:14.2.1-6.fc42.x 100% |   2.5 MiB/s | 204.3 KiB |  00m00s
[ 65/162] flexiblas-openblas-openmp64-0 100% | 189.5 KiB/s |  17.2 KiB |  00m00s
[ 66/162] autoconf-0:2.72-3.fc41.noarch 100% |   9.0 MiB/s | 829.7 KiB |  00m00s
[ 67/162] perl-Class-Struct-0:0.68-512. 100% | 278.7 KiB/s |  22.0 KiB |  00m00s
[ 68/162] perl-Errno-0:1.38-512.fc42.x8 100% | 188.7 KiB/s |  14.9 KiB |  00m00s
[ 69/162] perl-File-Path-0:2.18-511.fc4 100% | 440.7 KiB/s |  35.3 KiB |  00m00s
[ 70/162] perl-Getopt-Long-1:2.58-2.fc4 100% | 798.6 KiB/s |  63.9 KiB |  00m00s
[ 71/162] perl-IO-0:1.55-512.fc42.x86_6 100% |   1.0 MiB/s |  81.7 KiB |  00m00s
[ 72/162] cpp-0:14.2.1-6.fc42.x86_64    100% |  35.4 MiB/s |  11.9 MiB |  00m00s
[ 73/162] perl-PathTools-0:3.91-511.fc4 100% |   1.1 MiB/s |  87.4 KiB |  00m00s
[ 74/162] perl-Thread-Queue-0:3.14-511. 100% | 269.8 KiB/s |  21.3 KiB |  00m00s
[ 75/162] perl-constant-0:1.33-512.fc41 100% | 287.9 KiB/s |  23.0 KiB |  00m00s
[ 76/162] perl-threads-1:2.40-511.fc41. 100% | 724.8 KiB/s |  58.0 KiB |  00m00s
[ 77/162] perl-DynaLoader-0:1.56-512.fc 100% | 325.0 KiB/s |  26.0 KiB |  00m00s
[ 78/162] python3-numpy-f2py-1:2.2.1-1. 100% |   5.4 MiB/s | 490.9 KiB |  00m00s
[ 79/162] emacs-filesystem-1:30.0-3.fc4 100% |  90.4 KiB/s |   7.1 KiB |  00m00s
[ 80/162] openblas-openmp64-0:0.3.28-2. 100% |  24.4 MiB/s |   4.8 MiB |  00m00s
[ 81/162] m4-0:1.4.19-10.fc41.x86_64    100% |   3.5 MiB/s | 305.4 KiB |  00m00s
[ 82/162] openblas-openmp-0:0.3.28-2.fc 100% |  20.3 MiB/s |   5.0 MiB |  00m00s
[ 83/162] perl-Data-Dumper-0:2.189-512. 100% | 704.3 KiB/s |  56.3 KiB |  00m00s
[ 84/162] perl-File-Compare-0:1.100.800 100% | 167.2 KiB/s |  13.2 KiB |  00m00s
[ 85/162] perl-File-Copy-0:2.41-512.fc4 100% | 254.1 KiB/s |  20.1 KiB |  00m00s
[ 86/162] perl-File-Find-0:1.44-512.fc4 100% | 319.9 KiB/s |  25.3 KiB |  00m00s
[ 87/162] perl-File-Temp-1:0.231.100-51 100% | 739.0 KiB/s |  59.1 KiB |  00m00s
[ 88/162] perl-File-stat-0:1.14-512.fc4 100% | 215.2 KiB/s |  17.0 KiB |  00m00s
[ 89/162] perl-POSIX-0:2.20-512.fc42.x8 100% |   1.2 MiB/s |  97.0 KiB |  00m00s
[ 90/162] perl-Text-ParseWords-0:3.31-5 100% | 209.8 KiB/s |  16.6 KiB |  00m00s
[ 91/162] perl-vars-0:1.05-512.fc42.noa 100% | 164.0 KiB/s |  13.0 KiB |  00m00s
[ 92/162] perl-Pod-Usage-4:2.03-511.fc4 100% | 500.1 KiB/s |  40.0 KiB |  00m00s
[ 93/162] perl-base-0:2.27-512.fc42.noa 100% | 204.5 KiB/s |  16.2 KiB |  00m00s
[ 94/162] perl-overload-0:1.37-512.fc42 100% | 568.8 KiB/s |  45.5 KiB |  00m00s
[ 95/162] perl-Fcntl-0:1.18-512.fc42.x8 100% | 376.8 KiB/s |  29.8 KiB |  00m00s
[ 96/162] perl-SelectSaver-0:1.02-512.f 100% | 147.8 KiB/s |  11.7 KiB |  00m00s
[ 97/162] perl-Socket-4:2.038-511.fc41. 100% | 685.3 KiB/s |  54.8 KiB |  00m00s
[ 98/162] perl-Symbol-0:1.09-512.fc42.n 100% | 179.3 KiB/s |  14.2 KiB |  00m00s
[ 99/162] perl-Scalar-List-Utils-5:1.68 100% | 927.3 KiB/s |  74.2 KiB |  00m00s
[100/162] perl-threads-shared-0:1.69-51 100% | 559.1 KiB/s |  44.7 KiB |  00m00s
[101/162] perl-B-0:1.89-512.fc42.x86_64 100% |   2.1 MiB/s | 176.3 KiB |  00m00s
[102/162] perl-parent-1:0.244-1.fc42.no 100% | 191.7 KiB/s |  15.1 KiB |  00m00s
[103/162] perl-locale-0:1.12-512.fc42.n 100% | 171.8 KiB/s |  13.6 KiB |  00m00s
[104/162] perl-Pod-Perldoc-0:3.28.01-51 100% |   1.1 MiB/s |  86.1 KiB |  00m00s
[105/162] perl-podlators-1:6.0.2-2.fc41 100% |   1.6 MiB/s | 128.8 KiB |  00m00s
[106/162] perl-mro-0:1.29-512.fc42.x86_ 100% | 378.3 KiB/s |  29.9 KiB |  00m00s
[107/162] perl-overloading-0:0.02-512.f 100% | 162.8 KiB/s |  12.9 KiB |  00m00s
[108/162] perl-if-0:0.61.000-512.fc42.n 100% | 176.7 KiB/s |  14.0 KiB |  00m00s
[109/162] groff-base-0:1.23.0-7.fc41.x8 100% |  10.8 MiB/s |   1.1 MiB |  00m00s
[110/162] perl-HTTP-Tiny-0:0.090-1.fc42 100% | 705.7 KiB/s |  56.5 KiB |  00m00s
[111/162] perl-IPC-Open3-0:1.22-512.fc4 100% | 276.1 KiB/s |  21.8 KiB |  00m00s
[112/162] perl-Pod-Simple-1:3.45-511.fc 100% |   2.6 MiB/s | 219.0 KiB |  00m00s
[113/162] perl-Term-ANSIColor-0:5.01-51 100% | 596.1 KiB/s |  47.7 KiB |  00m00s
[114/162] perl-Term-Cap-0:1.18-511.fc41 100% | 279.4 KiB/s |  22.1 KiB |  00m00s
[115/162] perl-IO-Socket-SSL-0:2.089-1. 100% |   2.7 MiB/s | 231.2 KiB |  00m00s
[116/162] perl-MIME-Base64-0:3.16-511.f 100% | 379.0 KiB/s |  29.9 KiB |  00m00s
[117/162] perl-Net-SSLeay-0:1.94-7.fc41 100% |   4.3 MiB/s | 375.7 KiB |  00m00s
[118/162] perl-Time-Local-2:1.350-511.f 100% | 437.0 KiB/s |  34.5 KiB |  00m00s
[119/162] perl-Pod-Escapes-1:1.07-511.f 100% | 247.7 KiB/s |  19.8 KiB |  00m00s
[120/162] perl-Text-Tabs+Wrap-0:2024.00 100% | 276.6 KiB/s |  21.9 KiB |  00m00s
[121/162] ncurses-0:6.5-2.20240629.fc41 100% |   4.8 MiB/s | 423.8 KiB |  00m00s
[122/162] perl-IO-Socket-IP-0:0.43-1.fc 100% | 527.7 KiB/s |  42.2 KiB |  00m00s
[123/162] perl-URI-0:5.31-1.fc42.noarch 100% |   1.7 MiB/s | 140.6 KiB |  00m00s
[124/162] perl-AutoLoader-0:5.74-512.fc 100% | 268.1 KiB/s |  21.2 KiB |  00m00s
[125/162] perl-MIME-Base32-0:1.303-21.f 100% | 259.1 KiB/s |  20.5 KiB |  00m00s
[126/162] perl-libnet-0:3.15-512.fc41.n 100% |   1.5 MiB/s | 128.5 KiB |  00m00s
[127/162] perl-Digest-MD5-0:2.59-5.fc41 100% | 455.8 KiB/s |  36.0 KiB |  00m00s
[128/162] perl-FileHandle-0:2.05-512.fc 100% | 195.6 KiB/s |  15.5 KiB |  00m00s
[129/162] perl-Digest-0:1.20-511.fc41.n 100% | 311.3 KiB/s |  24.9 KiB |  00m00s
[130/162] python3-0:3.13.1-2.fc42.x86_6 100% | 339.9 KiB/s |  26.9 KiB |  00m00s
[131/162] expat-0:2.6.4-1.fc42.x86_64   100% |   1.4 MiB/s | 114.5 KiB |  00m00s
[132/162] libb2-0:0.98.1-12.fc41.x86_64 100% | 321.0 KiB/s |  25.7 KiB |  00m00s
[133/162] mpdecimal-0:2.5.1-16.fc41.x86 100% |   1.1 MiB/s |  89.0 KiB |  00m00s
[134/162] python-pip-wheel-0:24.3.1-1.f 100% |  11.6 MiB/s |   1.2 MiB |  00m00s
[135/162] tzdata-0:2024b-1.fc42.noarch  100% |   7.5 MiB/s | 712.7 KiB |  00m00s
[136/162] python3-devel-0:3.13.1-2.fc42 100% |   4.6 MiB/s | 403.1 KiB |  00m00s
[137/162] python3-libs-0:3.13.1-2.fc42. 100% |  25.6 MiB/s |   8.9 MiB |  00m00s
[138/162] perl-Encode-4:3.21-511.fc41.x 100% |  10.4 MiB/s |   1.1 MiB |  00m00s
[139/162] perl-Getopt-Std-0:1.14-512.fc 100% | 198.1 KiB/s |  15.6 KiB |  00m00s
[140/162] perl-Storable-1:3.32-511.fc41 100% |   1.2 MiB/s |  98.4 KiB |  00m00s
[141/162] openblas-0:0.3.28-2.fc42.x86_ 100% | 518.5 KiB/s |  41.0 KiB |  00m00s
[142/162] glibc-devel-0:2.40.9000-24.fc 100% |   6.9 MiB/s | 647.2 KiB |  00m00s
[143/162] libxcrypt-devel-0:4.4.36-12.f 100% | 352.2 KiB/s |  27.8 KiB |  00m00s
[144/162] libstdc++-devel-0:14.2.1-6.fc 100% |  20.1 MiB/s |   2.8 MiB |  00m00s
[145/162] SuperLU-devel-0:7.0.0-1.fc42. 100% | 298.8 KiB/s |  27.5 KiB |  00m00s
[146/162] SuperLU-0:7.0.0-1.fc42.x86_64 100% |   2.1 MiB/s | 188.0 KiB |  00m00s
[147/162] metis-0:5.1.0.3-6.fc41.x86_64 100% |   5.4 MiB/s | 571.9 KiB |  00m00s
[148/162] arpack-devel-0:3.9.1-4.fc41.x 100% | 236.8 KiB/s |  22.0 KiB |  00m00s
[149/162] hdf5-devel-0:1.14.5-1.fc42.x8 100% |  11.6 MiB/s |   1.5 MiB |  00m00s
[150/162] hdf5-0:1.14.5-1.fc42.x86_64   100% |  15.8 MiB/s |   2.1 MiB |  00m00s
[151/162] libaec-devel-0:1.1.3-1.fc42.x 100% | 127.8 KiB/s |  12.1 KiB |  00m00s
[152/162] libaec-0:1.1.3-1.fc42.x86_64  100% | 415.6 KiB/s |  37.4 KiB |  00m00s
[153/162] kernel-headers-0:6.13.0-0.rc3 100% |  14.4 MiB/s |   1.6 MiB |  00m00s
[154/162] annobin-plugin-gcc-0:12.79-1. 100% |   9.7 MiB/s | 975.8 KiB |  00m00s
[155/162] gcc-plugin-annobin-0:14.2.1-6 100% | 664.0 KiB/s |  57.1 KiB |  00m00s
[156/162] gcc-gfortran-0:14.2.1-6.fc42. 100% |  29.0 MiB/s |  13.4 MiB |  00m00s
[157/162] annobin-docs-0:12.79-1.fc42.n 100% |   1.1 MiB/s |  92.7 KiB |  00m00s
[158/162] pyproject-rpm-macros-0:1.16.3 100% | 558.1 KiB/s |  44.6 KiB |  00m00s
[159/162] python-rpm-macros-0:3.13-3.fc 100% | 223.6 KiB/s |  17.7 KiB |  00m00s
[160/162] python3-rpm-generators-0:14-1 100% | 370.9 KiB/s |  29.3 KiB |  00m00s
[161/162] python3-rpm-macros-0:3.13-3.f 100% | 157.5 KiB/s |  12.4 KiB |  00m00s
[162/162] python3-packaging-0:24.2-2.fc 100% |   1.9 MiB/s | 153.8 KiB |  00m00s
--------------------------------------------------------------------------------
[162/162] Total                         100% |  26.0 MiB/s | 168.0 MiB |  00m06s
Running transaction
[  1/164] Verify package files          100% | 295.0   B/s | 162.0   B |  00m01s
[  2/164] Prepare transaction           100% | 669.0   B/s | 162.0   B |  00m00s
[  3/164] Installing boost-system-0:1.8 100% |  15.9 MiB/s |  16.3 KiB |  00m00s
[  4/164] Installing libgfortran-0:14.2 100% | 304.5 MiB/s |   3.0 MiB |  00m00s
[  5/164] Installing boost-chrono-0:1.8 100% |  39.8 MiB/s |  40.8 KiB |  00m00s
[  6/164] Installing boost-thread-0:1.8 100% | 129.7 MiB/s | 132.8 KiB |  00m00s
[  7/164] Installing libicu-0:76.1-1.fc 100% | 294.6 MiB/s |  36.2 MiB |  00m00s
[  8/164] Installing libquadmath-0:14.2 100% | 159.8 MiB/s | 327.2 KiB |  00m00s
[  9/164] Installing libmpc-0:1.3.1-6.f 100% |  81.1 MiB/s | 166.2 KiB |  00m00s
[ 10/164] Installing boost-regex-0:1.83 100% | 131.2 MiB/s | 268.7 KiB |  00m00s
[ 11/164] Installing python-rpm-macros- 100% |  22.3 MiB/s |  22.8 KiB |  00m00s
[ 12/164] Installing boost-context-0:1. 100% |  16.1 MiB/s |  16.5 KiB |  00m00s
[ 13/164] Installing boost-atomic-0:1.8 100% |  24.1 MiB/s |  24.7 KiB |  00m00s
[ 14/164] Installing boost-filesystem-0 100% |  70.8 MiB/s | 145.0 KiB |  00m00s
[ 15/164] Installing python3-rpm-macros 100% |   0.0   B/s |   6.7 KiB |  00m00s
[ 16/164] Installing libaec-0:1.1.3-1.f 100% |  24.5 MiB/s | 100.5 KiB |  00m00s
[ 17/164] Installing libstdc++-devel-0: 100% | 204.7 MiB/s |  15.6 MiB |  00m00s
[ 18/164] Installing openblas-0:0.3.28- 100% |  52.9 MiB/s | 108.3 KiB |  00m00s
[ 19/164] Installing boost-date-time-0: 100% |  16.0 MiB/s |  16.3 KiB |  00m00s
[ 20/164] Installing boost-container-0: 100% |  67.1 MiB/s |  68.7 KiB |  00m00s
[ 21/164] Installing cmake-filesystem-0 100% |   2.5 MiB/s |   7.6 KiB |  00m00s
[ 22/164] Installing zlib-ng-compat-dev 100% | 105.8 MiB/s | 108.3 KiB |  00m00s
[ 23/164] Installing boost-json-0:1.83. 100% | 160.6 MiB/s | 329.0 KiB |  00m00s
[ 24/164] Installing boost-wave-0:1.83. 100% | 203.6 MiB/s | 625.5 KiB |  00m00s
[ 25/164] Installing openblas-openmp-0: 100% | 446.4 MiB/s |  39.3 MiB |  00m00s
[ 26/164] Installing flexiblas-netlib-0 100% | 296.3 MiB/s |  10.7 MiB |  00m00s
[ 27/164] Installing flexiblas-0:3.4.4- 100% |  48.5 MiB/s |  49.7 KiB |  00m00s
[ 28/164] Installing flexiblas-openblas 100% |  43.1 MiB/s |  44.1 KiB |  00m00s
[ 29/164] Installing openblas-openmp64- 100% | 415.6 MiB/s |  39.5 MiB |  00m00s
[ 30/164] Installing flexiblas-netlib64 100% | 307.8 MiB/s |  10.8 MiB |  00m00s
[ 31/164] Installing flexiblas-openblas 100% |  43.1 MiB/s |  44.2 KiB |  00m00s
[ 32/164] Installing arpack-0:3.9.1-4.f 100% | 212.3 MiB/s | 652.1 KiB |  00m00s
[ 33/164] Installing armadillo-0:12.8.1 100% |  81.6 MiB/s |  83.6 KiB |  00m00s
[ 34/164] Installing arpack-devel-0:3.9 100% |  70.4 MiB/s |  72.1 KiB |  00m00s
[ 35/164] Installing flexiblas-devel-0: 100% | 396.9 MiB/s |   4.8 MiB |  00m00s
[ 36/164] Installing hdf5-0:1.14.5-1.fc 100% | 254.2 MiB/s |   7.1 MiB |  00m00s
[ 37/164] Installing libaec-devel-0:1.1 100% |  13.2 MiB/s |  13.5 KiB |  00m00s
[ 38/164] Installing pyproject-rpm-macr 100% | 113.0 MiB/s | 115.7 KiB |  00m00s
[ 39/164] Installing boost-fiber-0:1.83 100% |  78.9 MiB/s |  80.8 KiB |  00m00s
[ 40/164] Installing boost-log-0:1.83.0 100% | 237.8 MiB/s |   1.4 MiB |  00m00s
[ 41/164] Installing boost-coroutine-0: 100% |  24.2 MiB/s |  24.8 KiB |  00m00s
[ 42/164] Installing boost-graph-0:1.83 100% | 162.7 MiB/s | 333.2 KiB |  00m00s
[ 43/164] Installing cpp-0:14.2.1-6.fc4 100% | 296.4 MiB/s |  35.0 MiB |  00m00s
[ 44/164] Installing libicu-devel-0:76. 100% | 211.4 MiB/s |   5.1 MiB |  00m00s
[ 45/164] Installing boost-locale-0:1.8 100% | 193.1 MiB/s | 593.3 KiB |  00m00s
[ 46/164] Installing boost-type_erasure 100% |  55.5 MiB/s |  56.8 KiB |  00m00s
[ 47/164] Installing boost-timer-0:1.83 100% |  24.1 MiB/s |  24.7 KiB |  00m00s
[ 48/164] Installing annobin-docs-0:12. 100% |  32.5 MiB/s |  99.7 KiB |  00m00s
[ 49/164] Installing kernel-headers-0:6 100% | 112.6 MiB/s |   6.6 MiB |  00m00s
[ 50/164] Installing libxcrypt-devel-0: 100% |  10.7 MiB/s |  32.9 KiB |  00m00s
[ 51/164] Installing glibc-devel-0:2.40 100% |  77.7 MiB/s |   2.3 MiB |  00m00s
[ 52/164] Installing metis-0:5.1.0.3-6. 100% | 193.3 MiB/s | 989.8 KiB |  00m00s
[ 53/164] Installing SuperLU-0:7.0.0-1. 100% | 160.0 MiB/s | 491.4 KiB |  00m00s
[ 54/164] Installing SuperLU-devel-0:7. 100% |  20.8 MiB/s | 106.3 KiB |  00m00s
[ 55/164] Installing tzdata-0:2024b-1.f 100% |  25.1 MiB/s |   1.9 MiB |  00m00s
[ 56/164] Installing python-pip-wheel-0 100% | 414.7 MiB/s |   1.2 MiB |  00m00s
[ 57/164] Installing mpdecimal-0:2.5.1- 100% | 100.6 MiB/s | 206.0 KiB |  00m00s
[ 58/164] Installing libb2-0:0.98.1-12. 100% |  42.3 MiB/s |  43.3 KiB |  00m00s
[ 59/164] Installing expat-0:2.6.4-1.fc 100% |  40.1 MiB/s | 287.6 KiB |  00m00s
[ 60/164] Installing python3-libs-0:3.1 100% | 206.2 MiB/s |  40.2 MiB |  00m00s
[ 61/164] Installing python3-0:3.13.1-2 100% |  31.6 MiB/s |  32.4 KiB |  00m00s
[ 62/164] Installing boost-python3-0:1. 100% | 121.2 MiB/s | 248.2 KiB |  00m00s
[ 63/164] Installing python3-packaging- 100% | 110.9 MiB/s | 568.0 KiB |  00m00s
[ 64/164] Installing python3-rpm-genera 100% |  40.5 MiB/s |  82.9 KiB |  00m00s
[ 65/164] Installing python3-devel-0:3. 100% | 106.8 MiB/s |   1.8 MiB |  00m00s
[ 66/164] Installing python3-numpy-f2py 100% |  79.5 MiB/s |   2.1 MiB |  00m00s
[ 67/164] Installing python3-numpy-1:2. 100% | 236.1 MiB/s |  41.1 MiB |  00m00s
[ 68/164] Installing boost-numpy3-0:1.8 100% |  27.7 MiB/s |  56.7 KiB |  00m00s
[ 69/164] Installing ncurses-0:6.5-2.20 100% |  36.4 MiB/s | 633.9 KiB |  00m00s
[ 70/164] Installing groff-base-0:1.23. 100% | 110.7 MiB/s |   3.9 MiB |  00m00s
[ 71/164] Installing perl-Digest-0:1.20 100% |  18.1 MiB/s |  37.1 KiB |  00m00s
[ 72/164] Installing perl-B-0:1.89-512. 100% | 163.2 MiB/s | 501.3 KiB |  00m00s
[ 73/164] Installing perl-FileHandle-0: 100% |   9.5 MiB/s |   9.8 KiB |  00m00s
[ 74/164] Installing perl-Digest-MD5-0: 100% |  30.1 MiB/s |  61.7 KiB |  00m00s
[ 75/164] Installing perl-Data-Dumper-0 100% |  55.5 MiB/s | 113.6 KiB |  00m00s
[ 76/164] Installing perl-MIME-Base32-0 100% |  31.4 MiB/s |  32.2 KiB |  00m00s
[ 77/164] Installing perl-libnet-0:3.15 100% |  95.9 MiB/s | 294.7 KiB |  00m00s
[ 78/164] Installing perl-IO-Socket-IP- 100% |  49.9 MiB/s | 102.2 KiB |  00m00s
[ 79/164] Installing perl-AutoLoader-0: 100% |  20.5 MiB/s |  20.9 KiB |  00m00s
[ 80/164] Installing perl-URI-0:5.31-1. 100% |  52.7 MiB/s | 269.6 KiB |  00m00s
[ 81/164] Installing perl-File-Path-0:2 100% |  63.0 MiB/s |  64.5 KiB |  00m00s
[ 82/164] Installing perl-locale-0:1.12 100% |   0.0   B/s |   6.9 KiB |  00m00s
[ 83/164] Installing perl-if-0:0.61.000 100% |   0.0   B/s |   6.2 KiB |  00m00s
[ 84/164] Installing perl-Time-Local-2: 100% |  68.9 MiB/s |  70.6 KiB |  00m00s
[ 85/164] Installing perl-Pod-Escapes-1 100% |  25.3 MiB/s |  25.9 KiB |  00m00s
[ 86/164] Installing perl-Text-Tabs+Wra 100% |  23.3 MiB/s |  23.9 KiB |  00m00s
[ 87/164] Installing perl-Net-SSLeay-0: 100% | 136.3 MiB/s |   1.4 MiB |  00m00s
[ 88/164] Installing perl-IO-Socket-SSL 100% | 172.7 MiB/s | 707.4 KiB |  00m00s
[ 89/164] Installing perl-Class-Struct- 100% |  25.3 MiB/s |  25.9 KiB |  00m00s
[ 90/164] Installing perl-POSIX-0:2.20- 100% | 115.4 MiB/s | 236.4 KiB |  00m00s
[ 91/164] Installing perl-File-Temp-1:0 100% |  80.1 MiB/s | 164.1 KiB |  00m00s
[ 92/164] Installing perl-IPC-Open3-0:1 100% |  22.7 MiB/s |  23.3 KiB |  00m00s
[ 93/164] Installing perl-Term-ANSIColo 100% |  96.9 MiB/s |  99.2 KiB |  00m00s
[ 94/164] Installing perl-Term-Cap-0:1. 100% |  29.9 MiB/s |  30.6 KiB |  00m00s
[ 95/164] Installing perl-Pod-Simple-1: 100% | 111.4 MiB/s | 570.5 KiB |  00m00s
[ 96/164] Installing perl-HTTP-Tiny-0:0 100% |  76.4 MiB/s | 156.4 KiB |  00m00s
[ 97/164] Installing perl-Socket-4:2.03 100% |  61.6 MiB/s | 126.1 KiB |  00m00s
[ 98/164] Installing perl-SelectSaver-0 100% |   0.0   B/s |   2.6 KiB |  00m00s
[ 99/164] Installing perl-Symbol-0:1.09 100% |   0.0   B/s |   7.2 KiB |  00m00s
[100/164] Installing perl-File-stat-0:1 100% |  12.7 MiB/s |  13.1 KiB |  00m00s
[101/164] Installing perl-podlators-1:6 100% | 104.6 MiB/s | 321.4 KiB |  00m00s
[102/164] Installing perl-Pod-Perldoc-0 100% |  55.1 MiB/s | 169.3 KiB |  00m00s
[103/164] Installing perl-Text-ParseWor 100% |  14.2 MiB/s |  14.6 KiB |  00m00s
[104/164] Installing perl-base-0:2.27-5 100% |   0.0   B/s |  12.9 KiB |  00m00s
[105/164] Installing perl-Fcntl-0:1.18- 100% |  48.9 MiB/s |  50.1 KiB |  00m00s
[106/164] Installing perl-mro-0:1.29-51 100% |  45.6 MiB/s |  46.7 KiB |  00m00s
[107/164] Installing perl-IO-0:1.55-512 100% |  75.8 MiB/s | 155.2 KiB |  00m00s
[108/164] Installing perl-overloading-0 100% |   5.4 MiB/s |   5.5 KiB |  00m00s
[109/164] Installing perl-Pod-Usage-4:2 100% |  84.3 MiB/s |  86.3 KiB |  00m00s
[110/164] Installing perl-Errno-0:1.38- 100% |   8.6 MiB/s |   8.8 KiB |  00m00s
[111/164] Installing perl-constant-0:1. 100% |  26.7 MiB/s |  27.4 KiB |  00m00s
[112/164] Installing perl-vars-0:1.05-5 100% |   4.2 MiB/s |   4.3 KiB |  00m00s
[113/164] Installing perl-Scalar-List-U 100% |  49.7 MiB/s | 152.6 KiB |  00m00s
[114/164] Installing perl-parent-1:0.24 100% |  10.7 MiB/s |  11.0 KiB |  00m00s
[115/164] Installing perl-overload-0:1. 100% |  70.3 MiB/s |  71.9 KiB |  00m00s
[116/164] Installing perl-MIME-Base64-0 100% |  23.6 MiB/s |  48.4 KiB |  00m00s
[117/164] Installing perl-Getopt-Std-0: 100% |  11.5 MiB/s |  11.7 KiB |  00m00s
[118/164] Installing perl-Storable-1:3. 100% | 114.3 MiB/s | 234.0 KiB |  00m00s
[119/164] Installing perl-Getopt-Long-1 100% |  71.9 MiB/s | 147.2 KiB |  00m00s
[120/164] Installing perl-File-Basename 100% |  14.2 MiB/s |  14.6 KiB |  00m00s
[121/164] Installing perl-Carp-0:1.54-5 100% |  46.6 MiB/s |  47.7 KiB |  00m00s
[122/164] Installing perl-Exporter-0:5. 100% |  54.3 MiB/s |  55.6 KiB |  00m00s
[123/164] Installing perl-DynaLoader-0: 100% |  31.7 MiB/s |  32.5 KiB |  00m00s
[124/164] Installing perl-PathTools-0:3 100% |  60.1 MiB/s | 184.6 KiB |  00m00s
[125/164] Installing perl-Encode-4:3.21 100% | 224.7 MiB/s |   4.7 MiB |  00m00s
[126/164] Installing perl-libs-4:5.40.0 100% | 151.2 MiB/s |  10.0 MiB |  00m00s
[127/164] Installing perl-interpreter-4 100% |  60.5 MiB/s | 124.0 KiB |  00m00s
[128/164] Installing perl-threads-1:2.4 100% |  57.2 MiB/s | 117.2 KiB |  00m00s
[129/164] Installing perl-threads-share 100% |  42.0 MiB/s |  86.0 KiB |  00m00s
[130/164] Installing perl-Thread-Queue- 100% |  29.7 MiB/s |  30.4 KiB |  00m00s
[131/164] Installing perl-macros-4:5.40 100% |   0.0   B/s |   5.8 KiB |  00m00s
[132/164] Installing perl-Fedora-VSP-0: 100% |  39.6 MiB/s |  40.6 KiB |  00m00s
[133/164] Installing perl-File-Compare- 100% |   1.5 MiB/s |   6.1 KiB |  00m00s
[134/164] Installing perl-File-Copy-0:2 100% |  19.7 MiB/s |  20.2 KiB |  00m00s
[135/164] Installing perl-File-Find-0:1 100% |  41.5 MiB/s |  42.5 KiB |  00m00s
[136/164] Installing m4-0:1.4.19-10.fc4 100% |  97.5 MiB/s | 599.2 KiB |  00m00s
[137/164] Installing emacs-filesystem-1 100% | 531.2 KiB/s | 544.0   B |  00m00s
[138/164] Installing autoconf-0:2.72-3. 100% | 233.1 MiB/s |   2.8 MiB |  00m00s
[139/164] Installing automake-0:1.17-1. 100% | 151.0 MiB/s |   1.8 MiB |  00m00s
[140/164] Installing boost-test-0:1.83. 100% | 203.1 MiB/s | 624.0 KiB |  00m00s
[141/164] Installing boost-stacktrace-0 100% |  64.6 MiB/s |  66.1 KiB |  00m00s
[142/164] Installing boost-serializatio 100% | 139.2 MiB/s | 427.6 KiB |  00m00s
[143/164] Installing boost-random-0:1.8 100% |  28.1 MiB/s |  28.8 KiB |  00m00s
[144/164] Installing boost-program-opti 100% | 129.3 MiB/s | 264.8 KiB |  00m00s
[145/164] Installing boost-nowide-0:1.8 100% |  28.0 MiB/s |  28.7 KiB |  00m00s
[146/164] Installing boost-math-0:1.83. 100% | 158.8 MiB/s | 650.6 KiB |  00m00s
[147/164] Installing boost-iostreams-0: 100% |  90.6 MiB/s |  92.7 KiB |  00m00s
[148/164] Installing boost-contract-0:1 100% |  98.4 MiB/s | 100.8 KiB |  00m00s
[149/164] Installing boost-0:1.83.0-9.f 100% |   1.7 MiB/s |   1.7 KiB |  00m00s
[150/164] Installing htslib-0:1.15.1-6. 100% | 181.2 MiB/s |   1.1 MiB |  00m00s
[151/164] Installing gsl-0:2.7.1-11.fc4 100% | 273.6 MiB/s |   3.3 MiB |  00m00s
[152/164] Installing make-1:4.4.1-9.fc4 100% | 163.7 MiB/s |   1.8 MiB |  00m00s
[153/164] Installing gcc-0:14.2.1-6.fc4 100% | 317.1 MiB/s | 104.3 MiB |  00m00s
[154/164] Installing libquadmath-devel- 100% |  11.4 MiB/s |  23.4 KiB |  00m00s
[155/164] Installing gcc-gfortran-0:14. 100% | 297.8 MiB/s |  37.2 MiB |  00m00s
[156/164] Installing hdf5-devel-0:1.14. 100% | 143.1 MiB/s |   3.3 MiB |  00m00s
[157/164] Installing armadillo-devel-0: 100% |  95.4 MiB/s |   7.4 MiB |  00m00s
[158/164] Installing boost-devel-0:1.83 100% | 140.8 MiB/s | 145.8 MiB |  00m01s
[159/164] Installing gcc-c++-0:14.2.1-6 100% | 307.5 MiB/s |  38.1 MiB |  00m00s
[160/164] Installing annobin-plugin-gcc 100% |  40.3 MiB/s | 990.9 KiB |  00m00s
[161/164] Installing gcc-plugin-annobin 100% |   2.3 MiB/s |  59.2 KiB |  00m00s
[162/164] Installing gsl-devel-0:2.7.1- 100% | 110.1 MiB/s |   1.7 MiB |  00m00s
[163/164] Installing htslib-devel-0:1.1 100% | 135.2 MiB/s | 415.5 KiB |  00m00s
[164/164] Installing perl-generators-0: 100% |  77.8 KiB/s |  23.2 KiB |  00m00s
Complete!
Finish: build setup for mmseq-1.0.11-20.fc42.src.rpm
Start: rpmbuild mmseq-1.0.11-20.fc42.src.rpm
Building target platforms: x86_64
Building for target x86_64
setting SOURCE_DATE_EPOCH=1721260800
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.LdmwNQ
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ test -d /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/rm -rf /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/SPECPARTS
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.1tBKu9
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ rm -rf mmseq-1.0.11
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/1.0.11.zip
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd mmseq-1.0.11
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
Patch #2 (mmseq-zlib.patch):
+ echo 'Patch #2 (mmseq-zlib.patch):'
+ /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .mmseq-zlib.patch --fuzz=0
patching file src/Makefile
+ rm -f bin/offsetGTF-linux bin/postdiff-linux
+ sed -e s/-lblas/-lflexiblas/g -e s/-llapack/-lflexiblas/g -i src/Makefile
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.9GeEH2
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ cd src
+ make -j2 'CXXFLAGS=-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer'
g++ -O3 -c sokal.cc
g++ -fopenmp -O3 -c uh.cpp 
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O3 hitsio.cpp hitsio.hpp -c hitsio.cpp
gcc -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -c -o fasta.o fasta.c
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 offsetGTF.cpp -o ../bin/offsetGTF
offsetGTF.cpp: In function ‘int main(int, char**)’:
offsetGTF.cpp:115:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  115 |       while(gff_ind < gff_positions[chrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:117:57: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  117 |               pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:114:11: warning: unused variable ‘curoff’ [-Wunused-variable]
  114 |       int curoff=offset;
      |           ^~~~~~
offsetGTF.cpp:150:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  150 |       while(gff_ind < gff_positions[prevchrom].size()) {
      |             ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:163:53: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  163 |           pos + tokens[3].size() - tokens[4].size() >= gff_positions[chrom][gff_ind]) {
offsetGTF.cpp:177:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  177 |     while(gff_ind < gff_positions[chrom].size() && gff_positions[chrom][gff_ind] <= pos) {
      |           ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
offsetGTF.cpp:235:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  235 |     for(int i=5; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
offsetGTF.cpp:237:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  237 |       if(i < tokens.size()-1) {
      |          ~~^~~~~~~~~~~~~~~~~
offsetGTF.cpp:108:7: warning: unused variable ‘gff_pos’ [-Wunused-variable]
  108 |   int gff_pos= -1;
      |       ^~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 t2g_hits.cpp -o ../bin/t2g_hits
t2g_hits.cpp: In function ‘int main(int, char**)’:
t2g_hits.cpp:90:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   90 |         for(int i=2; i < tokens.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~
t2g_hits.cpp:112:13: warning: ignoring return value of ‘_FIter std::unique(_FIter, _FIter) [with _FIter = __gnu_cxx::__normal_iterator<__cxx11::basic_string<char>*, vector<__cxx11::basic_string<char> > >]’, declared with attribute ‘nodiscard’ [-Wunused-result]
  112 |       unique(comb.begin(), comb.end());
      |       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
                 from t2g_hits.cpp:27:
/usr/include/c++/14/bits/stl_algo.h:891:5: note: declared here
  891 |     unique(_ForwardIterator __first, _ForwardIterator __last)
      |     ^~~~~~
g++ -DVERSION=1.0.11 -DARMA_64BIT_WORD -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O3 uh.o sokal.o mmcollapse.cpp -o ../bin/mmcollapse -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmcollapse.cpp: In function ‘void get_unidentifiable_transcripts(std::string, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, std::map<std::__cxx11::basic_string<char>, double> >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, bool>&)’:
mmcollapse.cpp:158:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  158 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:213:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  213 |     for(int i=0; i < tokens2.size(); i++) isIdent[tokens2[i]]=1;
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  259 |   for(int i=0; i < tokens.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘void collapse(arma::cube&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&, std::vector<int, std::allocator<int> >)’:
mmcollapse.cpp:400:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  400 |   for(int s=0; s < R.n_slices; s++) {
      |                ~~^~~~~~~~~~~~
mmcollapse.cpp:401:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  401 |     for(int t=0; t < candidates.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:402:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  402 |       for(int j=1; j < indexes.size(); j++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:414:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  414 |     for(int j=1; j < indexes.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:417:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  417 |       for(int i=0; i < R.n_cols; i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:426:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  426 |   for(int i=0; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:431:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  431 |   for(int i=1; i < tset.size(); i++) {
      |                ~~^~~~~~~~~~~~~
mmcollapse.cpp:437:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  437 |   for(int i=1; i < indexes.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘std::map<int, int> join_traces(arma::mat&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >)’:
mmcollapse.cpp:445:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  445 |   for(int t=0; t < allnames.size(); t++) tmap[allnames[t]]=t;
      |                ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:452:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  452 |   for(int c=0; c < candidates.size(); c++) {
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:456:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  456 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:464:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  464 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:469:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  469 |     for(int t=1; t < indexes.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:476:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  476 |   for(int i=0; i < toshed.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘void mean_corrs(const arma::cube&, const arma::umat&, arma::mat&, arma::mat&, std::vector<int, std::allocator<int> >, std::vector<int, std::allocator<int> >, double)’:
mmcollapse.cpp:486:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  486 |     for(int v= 0; v < R.n_rows; v++) {
      |                   ~~^~~~~~~~~~
mmcollapse.cpp:492:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare]
  492 |       for(int i=0; i < u.size(); i++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp: In function ‘void get_corrs(arma::cube&, arma::mat&, const std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, std::map<std::__cxx11::basic_string<char>, int>&)’:
mmcollapse.cpp:519:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  519 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:543:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  543 |         for(int t=0; t < tokens.size(); t++) {
      |                      ~~^~~~~~~~~~~~~~~
mmcollapse.cpp: In function ‘int main(int, char**)’:
mmcollapse.cpp:632:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  632 |   for(int i=1; i < basenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:691:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  691 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:707:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  707 |   for(int i=0; i < candidates.size(); i++) ts.push_back(i);
      |                ~~^~~~~~~~~~~~~~~~~~~
mmcollapse.cpp:732:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  732 |     for(int i=0 ;i < maxcorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:738:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  738 |     for(int i=0 ;i < mincorrs.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:802:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  802 |         for(int i=0 ;i < maxcorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:808:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  808 |         for(int i=0 ;i < mincorrs.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~
mmcollapse.cpp:827:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  827 |   for(int s=0; s < basenames.size(); s++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmcollapse.cpp:852:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  852 |       for(int t=0; t < tokens.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~
mmcollapse.cpp:882:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  882 |       for(int t=0; t < tokens2.size(); t++) {
      |                    ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:934:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  934 |     for(int t=0; t < M.n_cols; t++) {
      |                  ~~^~~~~~~~~~
mmcollapse.cpp:963:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  963 |     for(int i=1; i < tokens2.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
mmcollapse.cpp:976:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  976 |       if(MM.size1() < i+1 ) factor1=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:977:21: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  977 |       if(MM.size2() < j+1 ) factor2=2;
      |          ~~~~~~~~~~~^~~~~
mmcollapse.cpp:1010:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1010 |     for(int t=0; t < ids.size(); t++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1083:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1083 |     for(int i=0; i < ids.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmcollapse.cpp:1092:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1092 |     for(int v = 0; v < M.n_cols; v++) {
      |                    ~~^~~~~~~~~~
mmcollapse.cpp:840:9: warning: unused variable ‘isident’ [-Wunused-variable]
  840 |     int isident=0;
      |         ^~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema0()’:
hitsio.cpp:163:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  163 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema0()’:
hitsio.cpp:184:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  184 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeHeaderSchema1()’:
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
      |                 ^
hitsio.cpp:191:9: note: in expansion of macro ‘WRITE_UINT’
  191 |         WRITE_UINT(ofs, hitsfileSchema);
      |         ^~~~~~~~~~
hitsio.cpp:193:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  193 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp:24:17: warning: comparison of integer expressions of different signedness: ‘std::map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare]
   24 |         if (VAL > numeric_limits<uint32_t>::max()) { \
hitsio.cpp:196:17: note: in expansion of macro ‘WRITE_UINT’
  196 |                 WRITE_UINT(ofs, transcriptTrueLength[transcriptName[i] ])
      |                 ^~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileWriter::writeReadMapRecordSchema1()’:
hitsio.cpp:236:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  236 |         for(int i = 0; i < currentReadTranscripts.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hitsio.cpp: In member function ‘void HitsfileReader::readHeaderSchema1(std::vector<std::__cxx11::basic_string<char> >*, std::map<std::__cxx11::basic_string<char>, double>*, std::map<std::__cxx11::basic_string<char>, int>*, std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >*, std::vector<std::vector<std::__cxx11::basic_string<char> > >*)’:
hitsio.cpp:356:16: warning: unused variable ‘nextStrLen’ [-Wunused-variable]
  356 |         size_t nextStrLen;
      |                ^~~~~~~~~~
hitsio.cpp: In member function ‘bool HitsfileReader::readReadMapRecordTranscriptID(std::string&)’:
hitsio.cpp:447:1: warning: control reaches end of non-void function [-Wreturn-type]
  447 | }
      | ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O2 bms.cpp bms.hpp -c bms.cpp
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O3 sokal.o uh.o hitsio.o mmseq.cpp -o ../bin/mmseq -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmseq.cpp: In function ‘std::vector<double> meanvar(std::vector<double>, double, double)’:
mmseq.cpp:130:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  130 |   for(int i=0;i < v.size(); i++) {
      |               ~~^~~~~~~~~~
mmseq.cpp: In function ‘int main(int, char**)’:
mmseq.cpp:244:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  244 |       for(int i=0; i < tokens.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~
mmseq.cpp:423:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  423 |       if(M.size1() < m ) factor1=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:424:20: warning: comparison of integer expressions of different signedness: ‘boost::numeric::ublas::compressed_matrix<bool>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  424 |       if(M.size2() < n ) factor2=2;
      |          ~~~~~~~~~~^~~
mmseq.cpp:594:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  594 |   for(unsigned t=0; t < n; t++)  {
      |                     ~~^~~
mmseq.cpp:736:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  736 |     for(unsigned t=0; t < n; t++)
      |                       ~~^~~
mmseq.cpp:765:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  765 |       for(unsigned t=0; t < n; t++)
      |                         ~~^~~
mmseq.cpp:774:11: warning: unused variable ‘threadid’ [-Wunused-variable]
  774 |       int threadid=OMP_GET_THREAD_NUM;
      |           ^~~~~~~~
mmseq.cpp:829:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  829 |   for(unsigned t=0; t < n; t++)
      |                     ~~^~~
mmseq.cpp:912:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  912 |       for(unsigned t=0; t < n; t++) {
      |                         ~~^~~
mmseq.cpp:940:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  940 |   for(int i=0; i < identical_transcripts.size() * trace_length; i++) mu_trace_identical[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:961:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  961 |   for(int i=0; i < gene2transcripts.size() * trace_length; i++) mu_trace_gene[i]=0;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1098:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1098 |   for(unsigned t=0; t < n; t++) gofs << indexSid[t] << " ";
      |                     ~~^~~
mmseq.cpp:1112:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1112 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1136:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1136 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1144:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1144 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1149:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1149 |   for(int i=0;i < identical_transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1156:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1156 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1161:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1161 |   for(int i=0;i < gene2transcripts.size(); i++) {
      |               ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1168:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1168 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1179:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1179 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1189:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1189 |     for(int j=0; j < percentiles.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1208:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1208 |     for(int t=0; t < identical_transcripts.size() ; t++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1212:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1212 |     for(int t=0; t < gene2transcripts.size(); t++){
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1226:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1226 |   for(int i=0; i < identical_transcripts.size() ; i++) meanmu_identical[i] /= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1227:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1227 |   for(int i=0; i < gene2transcripts.size(); i++) meanmu_gene[i]/= trace_length;
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1330:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1330 |   for(int t=0; t < identical_transcripts.size(); t++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1349:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::map<std::__cxx11::basic_string<char>, std::vector<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1349 |   for(int g=0; g < gene2transcripts.size(); g++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1473:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1473 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1475:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1475 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1482:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1482 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1484:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1484 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1506 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1508:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1508 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1514:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1514 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1516:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1516 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1536:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1536 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1538:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1538 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1544:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1544 |       for(int i=0; i < percentiles.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1546:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1546 |         if(i==percentiles.size()-1) {
      |            ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1560:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1560 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1562:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1562 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1582:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1582 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1584:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1584 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1599:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1599 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1601:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1601 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1619:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1619 |   for(int i=0; i < percentiles.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1621:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1621 |     if(i==percentiles.size()-1) {
      |        ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1644:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1644 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1646:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1646 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1656:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1656 |         for(int i=0; i < percentiles.size(); i++) {
      |                      ~~^~~~~~~~~~~~~~~~~~~~
mmseq.cpp:1658:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1658 |           if(i==percentiles.size()-1) {
      |              ~^~~~~~~~~~~~~~~~~~~~~~
mmseq.cpp:308:8: warning: unused variable ‘buf16384’ [-Wunused-variable]
  308 |   char buf16384[16384];
      |        ^~~~~~~~
mmseq.cpp:391:8: warning: variable ‘doublehit’ set but not used [-Wunused-but-set-variable]
  391 |   bool doublehit;
      |        ^~~~~~~~~
bms.cpp: In member function ‘arma::Col<int> BMS::m2v(arma::Mat<double>)’:
bms.cpp:36:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   36 |   for(int i=0; i < P.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:37:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   37 |     for(int j=0; j < P.n_rows; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘std::vector<double> BMS::meanvar(arma::Col<double>)’:
bms.cpp:76:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   76 |   for(int i=0;i < v.n_elem; i++) {
      |               ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::print(bool)’:
bms.cpp:93:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   93 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp:97:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
   97 |       for(int i=0; i < M.n_cols; i++) {
      |                    ~~^~~~~~~~~~
bms.cpp:102:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  102 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::printtune(int)’:
bms.cpp:132:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  132 |   for(int feature=0; feature < y->n_rows; feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_alpha()’:
bms.cpp:185:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  185 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_beta()’:
bms.cpp:253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  253 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:255:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  255 |       for(int b=0; b < M.n_cols; b++) {
      |                    ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_eta()’:
bms.cpp:332:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  332 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:334:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  334 |       for(int c=0; c < P[model].n_cols; c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_sigmasq()’:
bms.cpp:415:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  415 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_lambda()’:
bms.cpp:504:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  504 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:506:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  506 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::set_pseudoprior_rho()’:
bms.cpp:559:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  559 |     for(int j=0; j < y->n_rows; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::copy_pseudo()’:
bms.cpp:582:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  582 |   for(int j=0; j < y->n_rows; j++) {
      |                ~~^~~~~~~~~~~
bms.cpp:585:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  585 |     for(int c=0; c < P[0].n_cols; c++) {
      |                  ~~^~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_alpha(int, int, bool)’:
bms.cpp:603:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  603 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:610:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  610 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_beta(int, int, bool)’:
bms.cpp:631:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  631 |     for(int j=0; j < y->n_cols; j++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:638:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  638 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:646:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  646 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp:651:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  651 |     for(int i=0; i < M.n_cols; i++) {
      |                  ~~^~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_eta(int, int, bool)’:
bms.cpp:663:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  663 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:666:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  666 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:673:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  673 |       for(int i=0; i < y->n_cols; i++) {
      |                    ~~^~~~~~~~~~~
bms.cpp:681:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  681 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:686:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  686 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_lambda(int, int, bool)’:
bms.cpp:699:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  699 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:704:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  704 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:711:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  711 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq(int, int, bool, bool)’:
bms.cpp:729:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  729 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:740:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  740 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:751:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  751 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp:763:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  763 |         for(int i=0; i < y->n_cols; i++) {
      |                      ~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::update_sigmasq_RW(int, int, bool, bool)’:
bms.cpp:877:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  877 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_posterior(int, int)’:
bms.cpp:931:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  931 |   for(int i=0; i < y->n_cols; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:940:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  940 |     for(int j=0; j < M.n_cols; j++) {
      |                  ~~^~~~~~~~~~
bms.cpp:947:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  947 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘double BMS::log_target_pseudo(int, int)’:
bms.cpp:968:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  968 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:974:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  974 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp: In member function ‘void BMS::print_pseudo()’:
bms.cpp:1086:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1086 |     for(int l=0; l < M.n_cols; l++) {
      |                  ~~^~~~~~~~~~
bms.cpp:1089:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1089 |     for(int l=0; l < P[model].n_cols; l++) {
      |                  ~~^~~~~~~~~~~~~~~~~
bms.cpp:1100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1100 |   for(int i=0; i < y->n_rows; i++) {
      |                ~~^~~~~~~~~~~
bms.cpp:1103:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1103 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
bms.cpp:1106:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1106 |       for(int l=0; l < P[model].n_cols; l++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bms.cpp: In constructor ‘BMS::BMS(const arma::Mat<double>*, const arma::Mat<double>&, arma::Mat<double>, arma::Mat<double>, arma::Mat<double>, arma::Mat<int>, double, double, double, std::string, gsl_rng**, int, bool)’:
bms.cpp:1188:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1188 |     for(int i=0; i < y->n_cols; i++) {
      |                  ~~^~~~~~~~~~~
bms.cpp:1192:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 1192 |         if(C(i,model)+1 > _n.size()) {
      |            ~~~~~~~~~~~~~^~~~~~~~~~~
bms.cpp: In member function ‘void BMS::initialise_streams(std::string)’:
bms.cpp:1348:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1348 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1354:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1354 |   for(int i=0; i < M.n_cols; i++) {
      |                ~~^~~~~~~~~~
bms.cpp:1360:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1360 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1366:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1366 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1372:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1372 |   for(int i=0; i < P[0].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
bms.cpp:1378:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
 1378 |   for(int i=0; i < P[1].n_cols; i++) {
      |                ~~^~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O3 fasta.o hitsio.o bam2hits.cpp -o ../bin/bam2hits -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
bam2hits.cpp: In function ‘void outputMergeHeaders(std::vector<FastaRecord>&, char, const char*, bool, HitsfileWriter&)’:
bam2hits.cpp:109:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  109 |   for(int i=0; i < sortedfastas.size()-1; i++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:119:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  119 |       for(int j=0; j < curSet.size()-1; j++) {
      |                    ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  137 |   for(int j=0; j < curSet.size()-1; j++) {
      |                ~~^~~~~~~~~~~~~~~~~
bam2hits.cpp: In function ‘std::vector<Alignment> repetitiveTranscriptFilter(std::vector<Alignment>&, int)’:
bam2hits.cpp:218:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Alignment>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  218 |   for(int j=0; j < alns.size(); j++) {
      |                ~~^~~~~~~~~~~~~
bam2hits.cpp:219:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  219 |     if(i < torem.size() && j==torem[i]) {
      |        ~~^~~~~~~~~~~~~~
bam2hits.cpp: In function ‘int main(int, char**)’:
bam2hits.cpp:518:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  518 |         if(_B != tg[0].size()-2) {
      |            ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:520:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  520 |           if(_A == tg[0].size()-2) {
      |              ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:522:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  522 |             if(_A != tg[1].size()-2) {
      |                ~~~^~~~~~~~~~~~~~~~~
bam2hits.cpp:558:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  558 |       for(int i=1; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:609:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  609 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:645:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  645 |     for(int i=0;i < fastas.size(); i++) transcriptCounts[i] /= (double)fastas[i].seq().size();
      |                 ~~^~~~~~~~~~~~~~~
bam2hits.cpp:659:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<FastaRecord>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  659 |     for(int i=0; i < fastas.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
bam2hits.cpp:662:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  662 |         for(int j =0; j < fastas[i].seq().size(); j++) {
      |                       ~~^~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:663:44: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  663 |           int tag = (j <= MSEQ_BEFORE || j >= fastas[i].seq().size()-MSEQ_AFTER) ? -2 : 0;
      |                                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:791:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  791 |       for(int j=MSEQ_BEFORE + 1; j <= fastas[i].seq().length()-MSEQ_AFTER; j++) {
      |                                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:920:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  920 |     for(int j=1; j < frequencies.size()-WINDOWFORISIZEMODE + 1; j++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:948:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  948 |     for(int i=0; i < testIsizes.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~
bam2hits.cpp:959:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  959 |     for(int i=0; i < heights.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~
bam2hits.cpp:997:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  997 |       for(int fl=1; fl <= (it->seq()).size(); fl++) {
      |                     ~~~^~~~~~~~~~~~~~~~~~~~~
bam2hits.cpp:1091:56: warning: comparing the result of pointer addition ‘(bam_aux_get(((const bam1_t*)line), ((const char*)"NM")) + ((sizetype)ait.__gnu_cxx::__normal_iterator<Alignment*, std::vector<Alignment> >::operator->()->Alignment::NM()))’ and NULL [-Waddress]
 1091 |             ait->NM(ait->NM() + bam_aux_get(line,"NM") == NULL ? 0 : bam_aux2i(bam_aux_get(line,"NM")));
      |                                                        ^
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -O3 fasta.o extract_transcripts.cpp -o ../bin/extract_transcripts
extract_transcripts.cpp: In function ‘int main(int, char**)’:
extract_transcripts.cpp:122:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  122 |       for(int i=0; i < tokens2.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~
extract_transcripts.cpp:169:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  169 |     for(int i=0; i < tokens.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:195:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  195 |       for(int i=0; i < it->starts()->size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~
extract_transcripts.cpp:203:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  203 |       while(faline < stitch.size()) {
      |             ~~~~~~~^~~~~~~~~~~~~~~
extract_transcripts.cpp:108:7: warning: unused variable ‘line’ [-Wunused-variable]
  108 |   int line=0;
      |       ^~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O3 hitsio.o hitstools.cpp -o ../bin/hitstools -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
hitstools.cpp: In function ‘void convert(char*, std::string)’:
hitstools.cpp:51:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   51 |         for(int i = 0; i < transcriptName.size(); i++) {
      |                        ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp: In function ‘int main(int, char**)’:
hitstools.cpp:96:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   96 |                 for(int i = 0; i < transcriptName.size(); i++) {
      |                                ~~^~~~~~~~~~~~~~~~~~~~~~~
hitstools.cpp:136:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  136 |     for(int i = 0; i < transcriptName.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -DVERSION=1.0.11 -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fopenmp -O2 bms.o mmdiff.cpp -o ../bin/mmdiff -lgsl -lgslcblas -lboost_regex -lhts -lboost_iostreams -lflexiblas -lflexiblas -Wl,--as-needed -lz -lgfortran
mmdiff.cpp: In function ‘void parse_mmseq(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, int, int, double, bool)’:
mmdiff.cpp:100:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  100 |   for(int i=0; i < filenames.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:111:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  111 |     for(int j=0; j < tokens.size(); j++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp:138:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  138 |       if(k + 1 > features.size()) {
      |          ~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:147:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  147 |       if(k+1 > y.n_rows) {
      |          ~~~~^~~~~~~~~~
mmdiff.cpp:152:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  152 |       if(!useprops && tokens[lmg_ind]=="NA" || useprops && tokens[mp_ind]=="NA") {
      |          ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:173:62: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  173 |   if(range_start >=0 && range_end > range_start && range_end < y.n_rows) {
      |                                                    ~~~~~~~~~~^~~~~~~~~~
mmdiff.cpp:94:46: warning: variable ‘mcse_ind’ set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                              ^~~~~~~~
mmdiff.cpp:94:59: warning: variable ‘iact_ind’ set but not used [-Wunused-but-set-variable]
   94 |   int feature_ind=-1, lmg_ind=-1, sd_ind=-1, mcse_ind=-1, iact_ind=-1, mp_ind=-1, sp_ind=-1, uh_ind=-1;
      |                                                           ^~~~~~~~
mmdiff.cpp: In function ‘void apply_normalisation(std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >, arma::Mat<double>&, arma::Mat<double>&, double)’:
mmdiff.cpp:212:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  212 |   for(int i=0; i < uh.n_rows; i++) {
      |                ~~^~~~~~~~~~~
mmdiff.cpp:214:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  214 |     for(int j=0; j < uh.n_cols; j++) {
      |                  ~~^~~~~~~~~~~
mmdiff.cpp:230:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  230 |   for(int i=0; i < use.size(); i++) {
      |                ~~^~~~~~~~~~~~
mmdiff.cpp:232:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  232 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp:239:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  239 |   for(int sample=0; sample < y.n_cols; sample++) {
      |                     ~~~~~~~^~~~~~~~~~
mmdiff.cpp:241:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  241 |     for(int i=0; i < use.size(); i++) {
      |                  ~~^~~~~~~~~~~~
mmdiff.cpp:246:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  246 |     for(int i=0; i < y.n_rows; i++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void apply_permutation(arma::Mat<double>&, arma::Mat<double>&)’:
mmdiff.cpp:257:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  257 |   for(int j=0; j< y.n_cols; j++) randinds.push_back(j);
      |                ~^~~~~~~~~~
mmdiff.cpp:258:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  258 |   for(int i=0; i < y.n_rows; i++) {
      |                ~~^~~~~~~~~~
mmdiff.cpp:259:19: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<int*, vector<int, allocator<int> > >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations]
  259 |     random_shuffle(randinds.begin(), randinds.end());
      |     ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/algorithm:61,
                 from mmdiff.cpp:31:
/usr/include/c++/14/bits/stl_algo.h:4491:5: note: declared here
 4491 |     random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last)
      |     ^~~~~~~~~~~~~~
mmdiff.cpp:260:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  260 |     for(int j=0; j < y.n_cols; j++) {
      |                  ~~^~~~~~~~~~
mmdiff.cpp: In function ‘void parse_matrices(std::string, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<double>&, arma::Mat<int>&, int)’:
mmdiff.cpp:310:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  310 |     for(int t=0; t < tokens.size(); t++) {
      |                  ~~^~~~~~~~~~~~~~~
mmdiff.cpp: In function ‘int main(int, char**)’:
mmdiff.cpp:420:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  420 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:431:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  431 |       for(int i=0; i < arguments.size(); i++) {
      |                    ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:439:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  439 |       while(ss < arguments.size()) {
      |             ~~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:451:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  451 |       if(ss != arguments.size()) {
      |          ~~~^~~~~~~~~~~~~~~~~~~
mmdiff.cpp:578:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  578 |   for(int i=0; i < arguments.size(); i++) {
      |                ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:640:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int, std::allocator<int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  640 |     for(int i=0; i < simple_de.size(); i++) {
      |                  ~~^~~~~~~~~~~~~~~~~~
mmdiff.cpp:759:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  759 |     if(inburnin && iter == OUTLEN/10 || !inburnin && iter==tuneiters) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:764:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  764 |     for(int feature=0; feature < features.size(); feature++) {
      |                        ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:837:17: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  837 |     if(inburnin && iter % subsample_burnin ==0 || !inburnin && iter >= tuneiters && (iter - tuneiters) % subsample_iter == 0) {
      |        ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:886:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  886 |       for(int l=0; l < M.n_cols; l++) {
      |                    ~~^~~~~~~~~~
mmdiff.cpp:898:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  898 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:902:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string<char>::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare]
  902 |       found2 = found2==string::npos ? -1 : found2;
      |                ~~~~~~^~~~~~~~~~~~~~
mmdiff.cpp:907:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  907 |   for(int f=0; f < samplenames.size(); f++) {
      |                ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:909:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  909 |     if(f < samplenames.size()-1) cout << "\t";
      |        ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:914:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  914 |   for(int feature=0; feature < features.size(); feature++) {
      |                      ~~~~~~~~^~~~~~~~~~~~~~~~~
mmdiff.cpp:926:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
  926 |         for(int l=0; l < M.n_cols; l++) {
      |                      ~~^~~~~~~~~~
mmdiff.cpp:936:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  936 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:939:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  939 |     for(int f=0; f < samplenames.size(); f++) {
      |                  ~~^~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:941:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  941 |       if(f < samplenames.size()-1) cout << "\t";
      |          ~~^~~~~~~~~~~~~~~~~~~~~~
mmdiff.cpp:951:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  951 |       for(int feature=0; feature < features.size(); feature++) {
      |                          ~~~~~~~~^~~~~~~~~~~~~~~~~
/usr/bin/ld: /tmp/ccTwYYbr.ltrans0.ltrans.o: in function `main':
/builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/src/bam2hits.cpp:653:(.text.startup+0x4480): warning: the use of `tmpnam' is dangerous, better use `mkstemp'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.3UXebd
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ '[' /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
++ dirname /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build
+ mkdir /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/bam2hits /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/extract_transcripts /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/hitstools /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmcollapse /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmdiff /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/mmseq /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/offsetGTF /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/t2g_hits /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/fastagrep.sh bin/mouse_strain_transcriptome.sh bin/usage.sh /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/filterGTF.rb bin/haploref.rb bin/testregexp.rb /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ install -p -m 0755 bin/ensembl_gtf_to_gff.pl /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/bin
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 1.0.11-20.fc42 --unique-debug-suffix -1.0.11-20.fc42.x86_64 --unique-debug-src-base mmseq-1.0.11-20.fc42.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11
find-debuginfo: starting
Extracting debug info from 8 files
DWARF-compressing 8 files
sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/mmseq-1.0.11-20.fc42.x86_64
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/fastagrep.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/mouse_strain_transcriptome.sh from /bin/sh to #!/usr/bin/sh
mangling shebang in /usr/bin/usage.sh from /bin/bash to #!/usr/bin/bash
mangling shebang in /usr/bin/filterGTF.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/haploref.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/testregexp.rb from /usr/bin/env ruby to #!/usr/bin/ruby
mangling shebang in /usr/bin/ensembl_gtf_to_gff.pl from /usr/bin/env perl to #!/usr/bin/perl
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
Scanned 12 directories and 40 files,
               processed 0 inodes,
               0 modified (0 replaced + 0 rewritten),
               0 unsupported format, 0 errors
Reading /builddir/build/BUILD/mmseq-1.0.11-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.apuWHT
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed  -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd mmseq-1.0.11
++ bin/mmseq --version
++ true
+ test mmseq-1.0.11 = mmseq-1.0.11
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: mmseq-1.0.11-20.fc42.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.73rVBj
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ cd mmseq-1.0.11
+ DOCDIR=/builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/README.md /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/COPYING /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ cp -pr /builddir/build/BUILD/mmseq-1.0.11-build/mmseq-1.0.11/doc /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT/usr/share/doc/mmseq
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: mmseq = 1.0.11-20.fc42 mmseq(x86-64) = 1.0.11-20.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/bash /usr/bin/perl /usr/bin/ruby /usr/bin/sh libboost_iostreams.so.1.83.0()(64bit) libboost_regex.so.1.83.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libflexiblas.so.3()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgsl.so.27()(64bit) libgslcblas.so.0()(64bit) libhts.so.3()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.15)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) perl(strict) rtld(GNU_HASH)
Processing files: mmseq-debugsource-1.0.11-20.fc42.x86_64
Provides: mmseq-debugsource = 1.0.11-20.fc42 mmseq-debugsource(x86-64) = 1.0.11-20.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: mmseq-debuginfo-1.0.11-20.fc42.x86_64
Provides: debuginfo(build-id) = 244cca4db8960bfa9736e4777c8e13061e55e624 debuginfo(build-id) = 2d1e7b2f69de86d48baf04cb95f80bcfb96b0de6 debuginfo(build-id) = 4eceb10cf07c92b18b067f48e834a3159bd19c60 debuginfo(build-id) = 797c04539c71bae794da2a270d7f89964f7e6e0b debuginfo(build-id) = 89a7fab581335e9a04efe499a5f0e7f24953dac1 debuginfo(build-id) = a66c7c62bab8e1c27cb943a59ef125c96a0aee62 debuginfo(build-id) = e167606d7970ebfa224f31d7f8e44427438e0540 debuginfo(build-id) = fcd14c6975535f23d27aa535f2059db027935e81 mmseq-debuginfo = 1.0.11-20.fc42 mmseq-debuginfo(x86-64) = 1.0.11-20.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: mmseq-debugsource(x86-64) = 1.0.11-20.fc42
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/mmseq-1.0.11-build/BUILDROOT
Wrote: /builddir/build/RPMS/mmseq-1.0.11-20.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/mmseq-debugsource-1.0.11-20.fc42.x86_64.rpm
Wrote: /builddir/build/RPMS/mmseq-debuginfo-1.0.11-20.fc42.x86_64.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.Hj6sqn
+ umask 022
+ cd /builddir/build/BUILD/mmseq-1.0.11-build
+ test -d /builddir/build/BUILD/mmseq-1.0.11-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/mmseq-1.0.11-build
+ rm -rf /builddir/build/BUILD/mmseq-1.0.11-build
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild mmseq-1.0.11-20.fc42.src.rpm
Finish: build phase for mmseq-1.0.11-20.fc42.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-x86_64-1734958332.919499/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
INFO: Done(/var/lib/copr-rpmbuild/results/mmseq-1.0.11-20.fc42.src.rpm) Config(child) 1 minutes 37 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "mmseq",
            "epoch": null,
            "version": "1.0.11",
            "release": "20.fc42",
            "arch": "src"
        },
        {
            "name": "mmseq",
            "epoch": null,
            "version": "1.0.11",
            "release": "20.fc42",
            "arch": "x86_64"
        },
        {
            "name": "mmseq-debugsource",
            "epoch": null,
            "version": "1.0.11",
            "release": "20.fc42",
            "arch": "x86_64"
        },
        {
            "name": "mmseq-debuginfo",
            "epoch": null,
            "version": "1.0.11",
            "release": "20.fc42",
            "arch": "x86_64"
        }
    ]
}
RPMResults finished