Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c156' (ED25519) to the list of known hosts.
Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 5386211 --chroot epel-8-x86_64 --detached
Version: 0.64
PID: 5334
Logging PID: 5335
Task:
{'appstream': False,
 'background': False,
 'build_id': 5386211,
 'buildroot_pkgs': [],
 'chroot': 'epel-8-x86_64',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': '967d3672917e3de39f6c2e4b7bba16f9d2a726d6',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/wibi-sk/pymol/pymol',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'pymol',
 'package_version': '2.5.0-6.fc37',
 'project_dirname': 'pymol',
 'project_name': 'pymol',
 'project_owner': 'wibi-sk',
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/wibi-sk/pymol/epel-8-x86_64/',
            'id': 'copr_base',
            'name': 'Copr repository'}],
 'sandbox': 'wibi-sk/pymol--wibi-sk',
 'source_json': {},
 'source_type': None,
 'submitter': 'wibi-sk',
 'tags': [],
 'task_id': '5386211-epel-8-x86_64',
 'timeout': 18000,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/wibi-sk/pymol/pymol /var/lib/copr-rpmbuild/workspace/workdir-fwhhr2z0/pymol --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/wibi-sk/pymol/pymol', '/var/lib/copr-rpmbuild/workspace/workdir-fwhhr2z0/pymol', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-fwhhr2z0/pymol'...

Running: git checkout 967d3672917e3de39f6c2e4b7bba16f9d2a726d6

cmd: ['git', 'checkout', '967d3672917e3de39f6c2e4b7bba16f9d2a726d6']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-fwhhr2z0/pymol
rc: 0
stdout: 
stderr: Note: switching to '967d3672917e3de39f6c2e4b7bba16f9d2a726d6'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 967d367 automatic import of pymol

Running: copr-distgit-client sources
/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated

cmd: ['copr-distgit-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-fwhhr2z0/pymol
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading pymol-open-source-2.5.0.tar.gz
INFO: Calling: curl -H Pragma: -o pymol-open-source-2.5.0.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/wibi-sk/pymol/pymol/pymol-open-source-2.5.0.tar.gz/md5/1c2d43789dd5580958fd75672ecfd8e7/pymol-open-source-2.5.0.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100  9.9M  100  9.9M    0     0  8938k      0  0:00:01  0:00:01 --:--:-- 8945k
INFO: Reading stdout from command: md5sum pymol-open-source-2.5.0.tar.gz
INFO: Downloading pymol.png
INFO: Calling: curl -H Pragma: -o pymol.png --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/wibi-sk/pymol/pymol/pymol.png/md5/3bbd85dbd40f588f505ad988b6df2933/pymol.png
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 19466  100 19466    0     0   213k      0 --:--:-- --:--:-- --:--:--  213k
INFO: Reading stdout from command: md5sum pymol.png

Running (timeout=18000): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-fwhhr2z0/pymol/pymol.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-fwhhr2z0/pymol --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1675244409.748214 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-fwhhr2z0/pymol/pymol.spec)  Config(rhel+epel-8-x86_64)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/rhel+epel-8-x86_64-bootstrap-1675244409.748214/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start(bootstrap): dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity
Copr repository                                 100 kB/s |  14 kB     00:00    
Red Hat Enterprise Linux - BaseOS                27 MB/s |  56 MB     00:02    
Red Hat Enterprise Linux - AppStream             37 MB/s |  52 MB     00:01    
Red Hat Enterprise Linux - CodeReady Linux Buil 7.9 MB/s | 8.8 MB     00:01    
Extra Packages for Enterprise Linux 8 - x86_64   11 MB/s |  13 MB     00:01    
Dependencies resolved.
===================================================================================================
 Package                                  Arch    Version                        Repository    Size
===================================================================================================
Installing:
 dnf                                      noarch  4.7.0-11.el8                   rhel-baseos  541 k
 dnf-plugins-core                         noarch  4.0.21-14.1.el8                rhel-baseos   72 k
 subscription-manager                     x86_64  1.28.32-1.el8                  rhel-baseos  1.2 M
Installing dependencies:
 acl                                      x86_64  2.2.53-1.el8                   rhel-baseos   81 k
 audit-libs                               x86_64  3.0.7-4.el8                    rhel-baseos  123 k
 basesystem                               noarch  11-5.el8                       rhel-baseos   11 k
 bash                                     x86_64  4.4.20-4.el8_6                 rhel-baseos  1.5 M
 brotli                                   x86_64  1.0.6-3.el8                    rhel-baseos  323 k
 bzip2-libs                               x86_64  1.0.6-26.el8                   rhel-baseos   48 k
 ca-certificates                          noarch  2022.2.54-80.2.el8_6           rhel-baseos  921 k
 chkconfig                                x86_64  1.19.1-1.el8                   rhel-baseos  198 k
 coreutils                                x86_64  8.30-13.el8                    rhel-baseos  1.2 M
 coreutils-common                         x86_64  8.30-13.el8                    rhel-baseos  2.0 M
 cracklib                                 x86_64  2.9.6-15.el8                   rhel-baseos   93 k
 cracklib-dicts                           x86_64  2.9.6-15.el8                   rhel-baseos  4.0 M
 crypto-policies                          noarch  20211116-1.gitae470d6.el8      rhel-baseos   64 k
 cryptsetup-libs                          x86_64  2.3.7-2.el8                    rhel-baseos  488 k
 curl                                     x86_64  7.61.1-25.el8_7.1              rhel-baseos  352 k
 cyrus-sasl-lib                           x86_64  2.1.27-6.el8_5                 rhel-baseos  123 k
 dbus                                     x86_64  1:1.12.8-23.el8_7.1            rhel-baseos   42 k
 dbus-common                              noarch  1:1.12.8-23.el8_7.1            rhel-baseos   47 k
 dbus-daemon                              x86_64  1:1.12.8-23.el8_7.1            rhel-baseos  241 k
 dbus-glib                                x86_64  0.110-2.el8                    rhel-baseos  127 k
 dbus-libs                                x86_64  1:1.12.8-23.el8_7.1            rhel-baseos  185 k
 dbus-tools                               x86_64  1:1.12.8-23.el8_7.1            rhel-baseos   86 k
 device-mapper                            x86_64  8:1.02.181-6.el8               rhel-baseos  377 k
 device-mapper-libs                       x86_64  8:1.02.181-6.el8               rhel-baseos  410 k
 dmidecode                                x86_64  1:3.3-4.el8                    rhel-baseos   92 k
 dnf-data                                 noarch  4.7.0-11.el8                   rhel-baseos  155 k
 dnf-plugin-subscription-manager          x86_64  1.28.32-1.el8                  rhel-baseos  314 k
 elfutils-default-yama-scope              noarch  0.187-4.el8                    rhel-baseos   52 k
 elfutils-libelf                          x86_64  0.187-4.el8                    rhel-baseos  231 k
 elfutils-libs                            x86_64  0.187-4.el8                    rhel-baseos  297 k
 expat                                    x86_64  2.2.5-10.el8_7.1               rhel-baseos  113 k
 file-libs                                x86_64  5.33-21.el8                    rhel-baseos  543 k
 filesystem                               x86_64  3.8-6.el8                      rhel-baseos  1.1 M
 gawk                                     x86_64  4.2.1-4.el8                    rhel-baseos  1.1 M
 gdbm                                     x86_64  1:1.18-2.el8                   rhel-baseos  130 k
 gdbm-libs                                x86_64  1:1.18-2.el8                   rhel-baseos   60 k
 glib2                                    x86_64  2.56.4-159.el8                 rhel-baseos  2.5 M
 glibc                                    x86_64  2.28-211.el8                   rhel-baseos  2.2 M
 glibc-all-langpacks                      x86_64  2.28-211.el8                   rhel-baseos   26 M
 glibc-common                             x86_64  2.28-211.el8                   rhel-baseos  1.0 M
 gmp                                      x86_64  1:6.1.2-10.el8                 rhel-baseos  321 k
 gnupg2                                   x86_64  2.2.20-3.el8_6                 rhel-baseos  2.4 M
 gnutls                                   x86_64  3.6.16-5.el8_6                 rhel-baseos  1.0 M
 gobject-introspection                    x86_64  1.56.1-1.el8                   rhel-baseos  255 k
 gpgme                                    x86_64  1.13.1-11.el8                  rhel-baseos  336 k
 grep                                     x86_64  3.1-6.el8                      rhel-baseos  274 k
 gzip                                     x86_64  1.9-13.el8_5                   rhel-baseos  167 k
 ima-evm-utils                            x86_64  1.3.2-12.el8                   rhel-baseos   64 k
 info                                     x86_64  6.5-7.el8                      rhel-baseos  198 k
 json-c                                   x86_64  0.13.1-3.el8                   rhel-baseos   41 k
 json-glib                                x86_64  1.4.4-1.el8                    rhel-baseos  144 k
 keyutils-libs                            x86_64  1.5.10-9.el8                   rhel-baseos   34 k
 kmod-libs                                x86_64  25-19.el8                      rhel-baseos   68 k
 krb5-libs                                x86_64  1.18.2-22.el8_7                rhel-baseos  840 k
 libacl                                   x86_64  2.2.53-1.el8                   rhel-baseos   35 k
 libarchive                               x86_64  3.3.3-4.el8                    rhel-baseos  360 k
 libassuan                                x86_64  2.5.1-3.el8                    rhel-baseos   83 k
 libattr                                  x86_64  2.4.48-3.el8                   rhel-baseos   27 k
 libblkid                                 x86_64  2.32.1-39.el8_7                rhel-baseos  220 k
 libcap                                   x86_64  2.48-4.el8                     rhel-baseos   74 k
 libcap-ng                                x86_64  0.7.11-1.el8                   rhel-baseos   33 k
 libcom_err                               x86_64  1.45.6-5.el8                   rhel-baseos   49 k
 libcomps                                 x86_64  0.1.18-1.el8                   rhel-baseos   82 k
 libcurl                                  x86_64  7.61.1-25.el8_7.1              rhel-baseos  302 k
 libdb                                    x86_64  5.3.28-42.el8_4                rhel-baseos  751 k
 libdb-utils                              x86_64  5.3.28-42.el8_4                rhel-baseos  150 k
 libdnf                                   x86_64  0.63.0-11.1.el8                rhel-baseos  710 k
 libfdisk                                 x86_64  2.32.1-39.el8_7                rhel-baseos  253 k
 libffi                                   x86_64  3.1-23.el8                     rhel-baseos   37 k
 libgcc                                   x86_64  8.5.0-16.el8_7                 rhel-baseos   81 k
 libgcrypt                                x86_64  1.8.5-7.el8_6                  rhel-baseos  463 k
 libgpg-error                             x86_64  1.31-1.el8                     rhel-baseos  242 k
 libidn2                                  x86_64  2.2.0-1.el8                    rhel-baseos   94 k
 libksba                                  x86_64  1.3.5-8.el8_6                  rhel-baseos  134 k
 libmodulemd                              x86_64  2.13.0-1.el8                   rhel-baseos  233 k
 libmount                                 x86_64  2.32.1-39.el8_7                rhel-baseos  236 k
 libnghttp2                               x86_64  1.33.0-3.el8_2.1               rhel-baseos   77 k
 libnl3                                   x86_64  3.7.0-1.el8                    rhel-baseos  337 k
 libnsl2                                  x86_64  1.2.0-2.20180605git4a062cf.el8 rhel-baseos   58 k
 libpsl                                   x86_64  0.20.2-6.el8                   rhel-baseos   61 k
 libpwquality                             x86_64  1.4.4-5.el8                    rhel-baseos  107 k
 librepo                                  x86_64  1.14.2-3.el8                   rhel-baseos   93 k
 libreport-filesystem                     x86_64  2.9.5-15.el8                   rhel-baseos   21 k
 librhsm                                  x86_64  0.0.3-4.el8                    rhel-baseos   33 k
 libseccomp                               x86_64  2.5.2-1.el8                    rhel-baseos   71 k
 libselinux                               x86_64  2.9-6.el8                      rhel-baseos  165 k
 libsemanage                              x86_64  2.9-9.el8_6                    rhel-baseos  168 k
 libsepol                                 x86_64  2.9-3.el8                      rhel-baseos  340 k
 libsigsegv                               x86_64  2.11-5.el8                     rhel-baseos   30 k
 libsmartcols                             x86_64  2.32.1-39.el8_7                rhel-baseos  179 k
 libsolv                                  x86_64  0.7.20-4.el8_7                 rhel-baseos  376 k
 libssh                                   x86_64  0.9.6-3.el8                    rhel-baseos  216 k
 libssh-config                            noarch  0.9.6-3.el8                    rhel-baseos   19 k
 libstdc++                                x86_64  8.5.0-16.el8_7                 rhel-baseos  454 k
 libtasn1                                 x86_64  4.13-4.el8_7                   rhel-baseos   76 k
 libtirpc                                 x86_64  1.1.4-8.el8                    rhel-baseos  113 k
 libunistring                             x86_64  0.9.9-3.el8                    rhel-baseos  422 k
 libusbx                                  x86_64  1.0.23-4.el8                   rhel-baseos   74 k
 libuser                                  x86_64  0.62-24.el8                    rhel-baseos  414 k
 libutempter                              x86_64  1.1.6-14.el8                   rhel-baseos   32 k
 libuuid                                  x86_64  2.32.1-39.el8_7                rhel-baseos   98 k
 libverto                                 x86_64  0.3.2-2.el8                    rhel-baseos   24 k
 libxcrypt                                x86_64  4.1.1-6.el8                    rhel-baseos   73 k
 libxml2                                  x86_64  2.9.7-15.el8_7.1               rhel-baseos  697 k
 libyaml                                  x86_64  0.1.7-5.el8                    rhel-baseos   61 k
 libzstd                                  x86_64  1.4.4-1.el8                    rhel-baseos  266 k
 lua-libs                                 x86_64  5.3.4-12.el8                   rhel-baseos  118 k
 lz4-libs                                 x86_64  1.8.3-3.el8_4                  rhel-baseos   66 k
 mpfr                                     x86_64  3.1.6-1.el8                    rhel-baseos  221 k
 ncurses                                  x86_64  6.1-9.20180224.el8             rhel-baseos  387 k
 ncurses-base                             noarch  6.1-9.20180224.el8             rhel-baseos   81 k
 ncurses-libs                             x86_64  6.1-9.20180224.el8             rhel-baseos  334 k
 nettle                                   x86_64  3.4.1-7.el8                    rhel-baseos  301 k
 npth                                     x86_64  1.5-4.el8                      rhel-baseos   26 k
 openldap                                 x86_64  2.4.46-18.el8                  rhel-baseos  352 k
 openssl-libs                             x86_64  1:1.1.1k-7.el8_6               rhel-baseos  1.5 M
 p11-kit                                  x86_64  0.23.22-1.el8                  rhel-baseos  324 k
 p11-kit-trust                            x86_64  0.23.22-1.el8                  rhel-baseos  137 k
 pam                                      x86_64  1.3.1-22.el8                   rhel-baseos  743 k
 passwd                                   x86_64  0.80-4.el8                     rhel-baseos  115 k
 pcre                                     x86_64  8.42-6.el8                     rhel-baseos  211 k
 pcre2                                    x86_64  10.32-3.el8_6                  rhel-baseos  247 k
 platform-python                          x86_64  3.6.8-48.el8_7                 rhel-baseos   86 k
 platform-python-setuptools               noarch  39.2.0-6.el8                   rhel-baseos  632 k
 popt                                     x86_64  1.18-1.el8                     rhel-baseos   61 k
 publicsuffix-list-dafsa                  noarch  20180723-1.el8                 rhel-baseos   56 k
 python3-chardet                          noarch  3.0.4-7.el8                    rhel-baseos  195 k
 python3-cloud-what                       x86_64  1.28.32-1.el8                  rhel-baseos  313 k
 python3-dateutil                         noarch  1:2.6.1-6.el8                  rhel-baseos  251 k
 python3-dbus                             x86_64  1.2.4-15.el8                   rhel-baseos  134 k
 python3-decorator                        noarch  4.2.1-2.el8                    rhel-baseos   27 k
 python3-dmidecode                        x86_64  3.12.2-15.el8                  rhel-baseos   94 k
 python3-dnf                              noarch  4.7.0-11.el8                   rhel-baseos  548 k
 python3-dnf-plugins-core                 noarch  4.0.21-14.1.el8                rhel-baseos  243 k
 python3-ethtool                          x86_64  0.14-5.el8                     rhel-baseos   45 k
 python3-gobject-base                     x86_64  3.28.3-2.el8                   rhel-baseos  313 k
 python3-gpg                              x86_64  1.13.1-11.el8                  rhel-baseos  244 k
 python3-hawkey                           x86_64  0.63.0-11.1.el8                rhel-baseos  117 k
 python3-idna                             noarch  2.5-5.el8                      rhel-baseos   97 k
 python3-iniparse                         noarch  0.4-31.el8                     rhel-baseos   49 k
 python3-inotify                          noarch  0.9.6-13.el8                   rhel-baseos   57 k
 python3-libcomps                         x86_64  0.1.18-1.el8                   rhel-baseos   52 k
 python3-libdnf                           x86_64  0.63.0-11.1.el8                rhel-baseos  779 k
 python3-librepo                          x86_64  1.14.2-3.el8                   rhel-baseos   54 k
 python3-libs                             x86_64  3.6.8-48.el8_7                 rhel-baseos  7.8 M
 python3-libxml2                          x86_64  2.9.7-15.el8_7.1               rhel-baseos  238 k
 python3-pip-wheel                        noarch  9.0.3-22.el8                   rhel-baseos  895 k
 python3-pysocks                          noarch  1.6.8-3.el8                    rhel-baseos   34 k
 python3-requests                         noarch  2.20.0-2.1.el8_1               rhel-baseos  123 k
 python3-rpm                              x86_64  4.14.3-24.el8_7                rhel-baseos  155 k
 python3-setuptools-wheel                 noarch  39.2.0-6.el8                   rhel-baseos  289 k
 python3-six                              noarch  1.11.0-8.el8                   rhel-baseos   38 k
 python3-subscription-manager-rhsm        x86_64  1.28.32-1.el8                  rhel-baseos  391 k
 python3-syspurpose                       x86_64  1.28.32-1.el8                  rhel-baseos  330 k
 python3-urllib3                          noarch  1.24.2-5.el8                   rhel-baseos  177 k
 readline                                 x86_64  7.0-10.el8                     rhel-baseos  199 k
 redhat-release                           x86_64  8.7-0.3.el8                    rhel-baseos   44 k
 rpm                                      x86_64  4.14.3-24.el8_7                rhel-baseos  543 k
 rpm-build-libs                           x86_64  4.14.3-24.el8_7                rhel-baseos  157 k
 rpm-libs                                 x86_64  4.14.3-24.el8_7                rhel-baseos  346 k
 sed                                      x86_64  4.5-5.el8                      rhel-baseos  298 k
 setup                                    noarch  2.12.2-7.el8                   rhel-baseos  181 k
 shadow-utils                             x86_64  2:4.6-17.el8                   rhel-baseos  1.2 M
 sqlite-libs                              x86_64  3.26.0-17.el8_7                rhel-baseos  581 k
 subscription-manager-rhsm-certificates   x86_64  1.28.32-1.el8                  rhel-baseos  288 k
 systemd                                  x86_64  239-68.el8_7.2                 rhel-baseos  3.6 M
 systemd-libs                             x86_64  239-68.el8_7.2                 rhel-baseos  1.1 M
 systemd-pam                              x86_64  239-68.el8_7.2                 rhel-baseos  492 k
 tpm2-tss                                 x86_64  2.3.2-4.el8                    rhel-baseos  275 k
 tzdata                                   noarch  2022g-1.el8                    rhel-baseos  470 k
 usermode                                 x86_64  1.113-2.el8                    rhel-baseos  202 k
 util-linux                               x86_64  2.32.1-39.el8_7                rhel-baseos  2.5 M
 virt-what                                x86_64  1.25-1.el8                     rhel-baseos   38 k
 which                                    x86_64  2.21-18.el8                    rhel-baseos   50 k
 xz-libs                                  x86_64  5.2.4-4.el8_6                  rhel-baseos   94 k
 zlib                                     x86_64  1.2.11-21.el8_7                rhel-baseos  103 k

Transaction Summary
===================================================================================================
Install  179 Packages

Total download size: 98 M
Installed size: 653 M
Downloading Packages:
(1/179): libassuan-2.5.1-3.el8.x86_64.rpm       233 kB/s |  83 kB     00:00    
(2/179): cracklib-2.9.6-15.el8.x86_64.rpm       260 kB/s |  93 kB     00:00    
(3/179): json-glib-1.4.4-1.el8.x86_64.rpm       362 kB/s | 144 kB     00:00    
(4/179): libutempter-1.1.6-14.el8.x86_64.rpm    187 kB/s |  32 kB     00:00    
(5/179): readline-7.0-10.el8.x86_64.rpm         1.0 MB/s | 199 kB     00:00    
(6/179): grep-3.1-6.el8.x86_64.rpm              1.1 MB/s | 274 kB     00:00    
(7/179): libyaml-0.1.7-5.el8.x86_64.rpm         363 kB/s |  61 kB     00:00    
(8/179): libsigsegv-2.11-5.el8.x86_64.rpm       221 kB/s |  30 kB     00:00    
(9/179): npth-1.5-4.el8.x86_64.rpm              138 kB/s |  26 kB     00:00    
(10/179): libattr-2.4.48-3.el8.x86_64.rpm       213 kB/s |  27 kB     00:00    
(11/179): bzip2-libs-1.0.6-26.el8.x86_64.rpm    360 kB/s |  48 kB     00:00    
(12/179): mpfr-3.1.6-1.el8.x86_64.rpm           1.3 MB/s | 221 kB     00:00    
(13/179): cracklib-dicts-2.9.6-15.el8.x86_64.rp  11 MB/s | 4.0 MB     00:00    
(14/179): acl-2.2.53-1.el8.x86_64.rpm           585 kB/s |  81 kB     00:00    
(15/179): python3-inotify-0.9.6-13.el8.noarch.r 407 kB/s |  57 kB     00:00    
(16/179): libunistring-0.9.9-3.el8.x86_64.rpm   2.0 MB/s | 422 kB     00:00    
(17/179): dbus-glib-0.110-2.el8.x86_64.rpm      830 kB/s | 127 kB     00:00    
(18/179): libnsl2-1.2.0-2.20180605git4a062cf.el 462 kB/s |  58 kB     00:00    
(19/179): gobject-introspection-1.56.1-1.el8.x8 1.7 MB/s | 255 kB     00:00    
(20/179): python3-iniparse-0.4-31.el8.noarch.rp 268 kB/s |  49 kB     00:00    
(21/179): publicsuffix-list-dafsa-20180723-1.el 435 kB/s |  56 kB     00:00    
(22/179): python3-decorator-4.2.1-2.el8.noarch. 223 kB/s |  27 kB     00:00    
(23/179): python3-idna-2.5-5.el8.noarch.rpm     664 kB/s |  97 kB     00:00    
(24/179): python3-pysocks-1.6.8-3.el8.noarch.rp 258 kB/s |  34 kB     00:00    
(25/179): python3-dateutil-2.6.1-6.el8.noarch.r 1.7 MB/s | 251 kB     00:00    
(26/179): libacl-2.2.53-1.el8.x86_64.rpm        283 kB/s |  35 kB     00:00    
(27/179): basesystem-11-5.el8.noarch.rpm         82 kB/s |  11 kB     00:00    
(28/179): python3-chardet-3.0.4-7.el8.noarch.rp 1.4 MB/s | 195 kB     00:00    
(29/179): libgpg-error-1.31-1.el8.x86_64.rpm    1.6 MB/s | 242 kB     00:00    
(30/179): python3-six-1.11.0-8.el8.noarch.rpm   297 kB/s |  38 kB     00:00    
(31/179): python3-dmidecode-3.12.2-15.el8.x86_6 754 kB/s |  94 kB     00:00    
(32/179): gmp-6.1.2-10.el8.x86_64.rpm           2.0 MB/s | 321 kB     00:00    
(33/179): python3-requests-2.20.0-2.1.el8_1.noa 962 kB/s | 123 kB     00:00    
(34/179): libidn2-2.2.0-1.el8.x86_64.rpm        693 kB/s |  94 kB     00:00    
(35/179): python3-dbus-1.2.4-15.el8.x86_64.rpm  929 kB/s | 134 kB     00:00    
(36/179): libnghttp2-1.33.0-3.el8_2.1.x86_64.rp 607 kB/s |  77 kB     00:00    
(37/179): libzstd-1.4.4-1.el8.x86_64.rpm        2.0 MB/s | 266 kB     00:00    
(38/179): python3-setuptools-wheel-39.2.0-6.el8 1.9 MB/s | 289 kB     00:00    
(39/179): libreport-filesystem-2.9.5-15.el8.x86 119 kB/s |  21 kB     00:00    
(40/179): libusbx-1.0.23-4.el8.x86_64.rpm       622 kB/s |  74 kB     00:00    
(41/179): python3-gobject-base-3.28.3-2.el8.x86 1.9 MB/s | 313 kB     00:00    
(42/179): p11-kit-trust-0.23.22-1.el8.x86_64.rp 1.0 MB/s | 137 kB     00:00    
(43/179): platform-python-setuptools-39.2.0-6.e 3.4 MB/s | 632 kB     00:00    
(44/179): libpsl-0.20.2-6.el8.x86_64.rpm        455 kB/s |  61 kB     00:00    
(45/179): python3-urllib3-1.24.2-5.el8.noarch.r 1.1 MB/s | 177 kB     00:00    
(46/179): librhsm-0.0.3-4.el8.x86_64.rpm        228 kB/s |  33 kB     00:00    
(47/179): popt-1.18-1.el8.x86_64.rpm            381 kB/s |  61 kB     00:00    
(48/179): brotli-1.0.6-3.el8.x86_64.rpm         2.0 MB/s | 323 kB     00:00    
(49/179): lz4-libs-1.8.3-3.el8_4.x86_64.rpm     404 kB/s |  66 kB     00:00    
(50/179): ima-evm-utils-1.3.2-12.el8.x86_64.rpm 446 kB/s |  64 kB     00:00    
(51/179): p11-kit-0.23.22-1.el8.x86_64.rpm      2.1 MB/s | 324 kB     00:00    
(52/179): tpm2-tss-2.3.2-4.el8.x86_64.rpm       1.8 MB/s | 275 kB     00:00    
(53/179): pcre-8.42-6.el8.x86_64.rpm            1.6 MB/s | 211 kB     00:00    
(54/179): openldap-2.4.46-18.el8.x86_64.rpm     2.4 MB/s | 352 kB     00:00    
(55/179): nettle-3.4.1-7.el8.x86_64.rpm         2.2 MB/s | 301 kB     00:00    
(56/179): ncurses-libs-6.1-9.20180224.el8.x86_6 2.6 MB/s | 334 kB     00:00    
(57/179): libmodulemd-2.13.0-1.el8.x86_64.rpm   1.7 MB/s | 233 kB     00:00    
(58/179): libdb-utils-5.3.28-42.el8_4.x86_64.rp 1.1 MB/s | 150 kB     00:00    
(59/179): filesystem-3.8-6.el8.x86_64.rpm       7.1 MB/s | 1.1 MB     00:00    
(60/179): usermode-1.113-2.el8.x86_64.rpm       1.5 MB/s | 202 kB     00:00    
(61/179): libxcrypt-4.1.1-6.el8.x86_64.rpm      576 kB/s |  73 kB     00:00    
(62/179): chkconfig-1.19.1-1.el8.x86_64.rpm     1.6 MB/s | 198 kB     00:00    
(63/179): libcap-ng-0.7.11-1.el8.x86_64.rpm     272 kB/s |  33 kB     00:00    
(64/179): libdb-5.3.28-42.el8_4.x86_64.rpm      4.6 MB/s | 751 kB     00:00    
(65/179): ncurses-6.1-9.20180224.el8.x86_64.rpm 3.0 MB/s | 387 kB     00:00    
(66/179): gzip-1.9-13.el8_5.x86_64.rpm          1.3 MB/s | 167 kB     00:00    
(67/179): dmidecode-3.3-4.el8.x86_64.rpm        674 kB/s |  92 kB     00:00    
(68/179): libsepol-2.9-3.el8.x86_64.rpm         1.4 MB/s | 340 kB     00:00    
(69/179): passwd-0.80-4.el8.x86_64.rpm          962 kB/s | 115 kB     00:00    
(70/179): keyutils-libs-1.5.10-9.el8.x86_64.rpm 283 kB/s |  34 kB     00:00    
(71/179): ncurses-base-6.1-9.20180224.el8.noarc 588 kB/s |  81 kB     00:00    
(72/179): cyrus-sasl-lib-2.1.27-6.el8_5.x86_64. 1.0 MB/s | 123 kB     00:00    
(73/179): lua-libs-5.3.4-12.el8.x86_64.rpm      871 kB/s | 118 kB     00:00    
(74/179): gpgme-1.13.1-11.el8.x86_64.rpm        2.4 MB/s | 336 kB     00:00    
(75/179): sed-4.5-5.el8.x86_64.rpm              2.1 MB/s | 298 kB     00:00    
(76/179): kmod-libs-25-19.el8.x86_64.rpm        507 kB/s |  68 kB     00:00    
(77/179): python3-gpg-1.13.1-11.el8.x86_64.rpm  1.8 MB/s | 244 kB     00:00    
(78/179): python3-ethtool-0.14-5.el8.x86_64.rpm 362 kB/s |  45 kB     00:00    
(79/179): python3-libcomps-0.1.18-1.el8.x86_64. 426 kB/s |  52 kB     00:00    
(80/179): libffi-3.1-23.el8.x86_64.rpm          305 kB/s |  37 kB     00:00    
(81/179): json-c-0.13.1-3.el8.x86_64.rpm        314 kB/s |  41 kB     00:00    
(82/179): python3-pip-wheel-9.0.3-22.el8.noarch 6.1 MB/s | 895 kB     00:00    
(83/179): libssh-0.9.6-3.el8.x86_64.rpm         1.5 MB/s | 216 kB     00:00    
(84/179): libseccomp-2.5.2-1.el8.x86_64.rpm     569 kB/s |  71 kB     00:00    
(85/179): libcomps-0.1.18-1.el8.x86_64.rpm      665 kB/s |  82 kB     00:00    
(86/179): libuser-0.62-24.el8.x86_64.rpm        2.8 MB/s | 414 kB     00:00    
(87/179): cryptsetup-libs-2.3.7-2.el8.x86_64.rp 3.6 MB/s | 488 kB     00:00    
(88/179): gawk-4.2.1-4.el8.x86_64.rpm           8.0 MB/s | 1.1 MB     00:00    
(89/179): xz-libs-5.2.4-4.el8_6.x86_64.rpm      724 kB/s |  94 kB     00:00    
(90/179): crypto-policies-20211116-1.gitae470d6 527 kB/s |  64 kB     00:00    
(91/179): info-6.5-7.el8.x86_64.rpm             1.6 MB/s | 198 kB     00:00    
(92/179): libssh-config-0.9.6-3.el8.noarch.rpm  158 kB/s |  19 kB     00:00    
(93/179): coreutils-8.30-13.el8.x86_64.rpm      7.8 MB/s | 1.2 MB     00:00    
(94/179): dnf-data-4.7.0-11.el8.noarch.rpm      1.2 MB/s | 155 kB     00:00    
(95/179): libpwquality-1.4.4-5.el8.x86_64.rpm   867 kB/s | 107 kB     00:00    
(96/179): subscription-manager-1.28.32-1.el8.x8 8.7 MB/s | 1.2 MB     00:00    
(97/179): libksba-1.3.5-8.el8_6.x86_64.rpm      1.0 MB/s | 134 kB     00:00    
(98/179): gdbm-libs-1.18-2.el8.x86_64.rpm       484 kB/s |  60 kB     00:00    
(99/179): libverto-0.3.2-2.el8.x86_64.rpm       173 kB/s |  24 kB     00:00    
(100/179): coreutils-common-8.30-13.el8.x86_64.  13 MB/s | 2.0 MB     00:00    
(101/179): glibc-all-langpacks-2.28-211.el8.x86  48 MB/s |  26 MB     00:00    
(102/179): gnupg2-2.2.20-3.el8_6.x86_64.rpm     9.7 MB/s | 2.4 MB     00:00    
(103/179): libtirpc-1.1.4-8.el8.x86_64.rpm      925 kB/s | 113 kB     00:00    
(104/179): virt-what-1.25-1.el8.x86_64.rpm      303 kB/s |  38 kB     00:00    
(105/179): ca-certificates-2022.2.54-80.2.el8_6 6.6 MB/s | 921 kB     00:00    
(106/179): pcre2-10.32-3.el8_6.x86_64.rpm       2.0 MB/s | 247 kB     00:00    
(107/179): pam-1.3.1-22.el8.x86_64.rpm          5.7 MB/s | 743 kB     00:00    
(108/179): libgcrypt-1.8.5-7.el8_6.x86_64.rpm   3.5 MB/s | 463 kB     00:00    
(109/179): openssl-libs-1.1.1k-7.el8_6.x86_64.r  11 MB/s | 1.5 MB     00:00    
(110/179): python3-dnf-4.7.0-11.el8.noarch.rpm  4.0 MB/s | 548 kB     00:00    
(111/179): libcom_err-1.45.6-5.el8.x86_64.rpm   405 kB/s |  49 kB     00:00    
(112/179): libsemanage-2.9-9.el8_6.x86_64.rpm   1.2 MB/s | 168 kB     00:00    
(113/179): bash-4.4.20-4.el8_6.x86_64.rpm       8.7 MB/s | 1.5 MB     00:00    
(114/179): device-mapper-1.02.181-6.el8.x86_64. 2.8 MB/s | 377 kB     00:00    
(115/179): gnutls-3.6.16-5.el8_6.x86_64.rpm     7.2 MB/s | 1.0 MB     00:00    
(116/179): libdnf-0.63.0-11.1.el8.x86_64.rpm    5.3 MB/s | 710 kB     00:00    
(117/179): elfutils-libelf-0.187-4.el8.x86_64.r 1.8 MB/s | 231 kB     00:00    
(118/179): file-libs-5.33-21.el8.x86_64.rpm     4.1 MB/s | 543 kB     00:00    
(119/179): dnf-plugins-core-4.0.21-14.1.el8.noa 594 kB/s |  72 kB     00:00    
(120/179): python3-dnf-plugins-core-4.0.21-14.1 1.8 MB/s | 243 kB     00:00    
(121/179): librepo-1.14.2-3.el8.x86_64.rpm      767 kB/s |  93 kB     00:00    
(122/179): python3-syspurpose-1.28.32-1.el8.x86 2.6 MB/s | 330 kB     00:00    
(123/179): python3-cloud-what-1.28.32-1.el8.x86 2.5 MB/s | 313 kB     00:00    
(124/179): which-2.21-18.el8.x86_64.rpm         390 kB/s |  50 kB     00:00    
(125/179): gdbm-1.18-2.el8.x86_64.rpm           1.0 MB/s | 130 kB     00:00    
(126/179): libnl3-3.7.0-1.el8.x86_64.rpm        2.3 MB/s | 337 kB     00:00    
(127/179): python3-hawkey-0.63.0-11.1.el8.x86_6 946 kB/s | 117 kB     00:00    
(128/179): glibc-2.28-211.el8.x86_64.rpm         15 MB/s | 2.2 MB     00:00    
(129/179): glibc-common-2.28-211.el8.x86_64.rpm 7.1 MB/s | 1.0 MB     00:00    
(130/179): setup-2.12.2-7.el8.noarch.rpm        1.4 MB/s | 181 kB     00:00    
(131/179): elfutils-libs-0.187-4.el8.x86_64.rpm 2.3 MB/s | 297 kB     00:00    
(132/179): libarchive-3.3.3-4.el8.x86_64.rpm    2.7 MB/s | 360 kB     00:00    
(133/179): dnf-plugin-subscription-manager-1.28 2.5 MB/s | 314 kB     00:00    
(134/179): dnf-4.7.0-11.el8.noarch.rpm          4.1 MB/s | 541 kB     00:00    
(135/179): audit-libs-3.0.7-4.el8.x86_64.rpm    1.0 MB/s | 123 kB     00:00    
(136/179): device-mapper-libs-1.02.181-6.el8.x8 3.2 MB/s | 410 kB     00:00    
(137/179): python3-librepo-1.14.2-3.el8.x86_64. 415 kB/s |  54 kB     00:00    
(138/179): subscription-manager-rhsm-certificat 2.1 MB/s | 288 kB     00:00    
(139/179): python3-subscription-manager-rhsm-1. 2.9 MB/s | 391 kB     00:00    
(140/179): python3-libdnf-0.63.0-11.1.el8.x86_6 5.7 MB/s | 779 kB     00:00    
(141/179): elfutils-default-yama-scope-0.187-4. 434 kB/s |  52 kB     00:00    
(142/179): libcap-2.48-4.el8.x86_64.rpm         593 kB/s |  74 kB     00:00    
(143/179): shadow-utils-4.6-17.el8.x86_64.rpm   8.8 MB/s | 1.2 MB     00:00    
(144/179): libselinux-2.9-6.el8.x86_64.rpm      1.2 MB/s | 165 kB     00:00    
(145/179): glib2-2.56.4-159.el8.x86_64.rpm       15 MB/s | 2.5 MB     00:00    
(146/179): redhat-release-8.7-0.3.el8.x86_64.rp 349 kB/s |  44 kB     00:00    
(147/179): rpm-libs-4.14.3-24.el8_7.x86_64.rpm  2.6 MB/s | 346 kB     00:00    
(148/179): rpm-4.14.3-24.el8_7.x86_64.rpm       4.0 MB/s | 543 kB     00:00    
(149/179): python3-rpm-4.14.3-24.el8_7.x86_64.r 1.2 MB/s | 155 kB     00:00    
(150/179): rpm-build-libs-4.14.3-24.el8_7.x86_6 1.2 MB/s | 157 kB     00:00    
(151/179): platform-python-3.6.8-48.el8_7.x86_6 573 kB/s |  86 kB     00:00    
(152/179): python3-libs-3.6.8-48.el8_7.x86_64.r  26 MB/s | 7.8 MB     00:00    
(153/179): krb5-libs-1.18.2-22.el8_7.x86_64.rpm 5.6 MB/s | 840 kB     00:00    
(154/179): tzdata-2022g-1.el8.noarch.rpm        3.6 MB/s | 470 kB     00:00    
(155/179): libsolv-0.7.20-4.el8_7.x86_64.rpm    2.9 MB/s | 376 kB     00:00    
(156/179): dbus-tools-1.12.8-23.el8_7.1.x86_64. 702 kB/s |  86 kB     00:00    
(157/179): curl-7.61.1-25.el8_7.1.x86_64.rpm    2.8 MB/s | 352 kB     00:00    
(158/179): libuuid-2.32.1-39.el8_7.x86_64.rpm   795 kB/s |  98 kB     00:00    
(159/179): libgcc-8.5.0-16.el8_7.x86_64.rpm     662 kB/s |  81 kB     00:00    
(160/179): util-linux-2.32.1-39.el8_7.x86_64.rp  17 MB/s | 2.5 MB     00:00    
(161/179): expat-2.2.5-10.el8_7.1.x86_64.rpm    949 kB/s | 113 kB     00:00    
(162/179): systemd-pam-239-68.el8_7.2.x86_64.rp 3.9 MB/s | 492 kB     00:00    
(163/179): libtasn1-4.13-4.el8_7.x86_64.rpm     599 kB/s |  76 kB     00:00    
(164/179): libblkid-2.32.1-39.el8_7.x86_64.rpm  1.8 MB/s | 220 kB     00:00    
(165/179): dbus-libs-1.12.8-23.el8_7.1.x86_64.r 1.5 MB/s | 185 kB     00:00    
(166/179): libstdc++-8.5.0-16.el8_7.x86_64.rpm  3.2 MB/s | 454 kB     00:00    
(167/179): dbus-daemon-1.12.8-23.el8_7.1.x86_64 1.7 MB/s | 241 kB     00:00    
(168/179): systemd-239-68.el8_7.2.x86_64.rpm     21 MB/s | 3.6 MB     00:00    
(169/179): libmount-2.32.1-39.el8_7.x86_64.rpm  1.8 MB/s | 236 kB     00:00    
(170/179): libcurl-7.61.1-25.el8_7.1.x86_64.rpm 2.2 MB/s | 302 kB     00:00    
(171/179): systemd-libs-239-68.el8_7.2.x86_64.r 7.0 MB/s | 1.1 MB     00:00    
(172/179): dbus-1.12.8-23.el8_7.1.x86_64.rpm    345 kB/s |  42 kB     00:00    
(173/179): zlib-1.2.11-21.el8_7.x86_64.rpm      816 kB/s | 103 kB     00:00    
(174/179): sqlite-libs-3.26.0-17.el8_7.x86_64.r 4.2 MB/s | 581 kB     00:00    
(175/179): libfdisk-2.32.1-39.el8_7.x86_64.rpm  1.9 MB/s | 253 kB     00:00    
(176/179): dbus-common-1.12.8-23.el8_7.1.noarch 329 kB/s |  47 kB     00:00    
(177/179): libsmartcols-2.32.1-39.el8_7.x86_64. 1.4 MB/s | 179 kB     00:00    
(178/179): libxml2-2.9.7-15.el8_7.1.x86_64.rpm  5.1 MB/s | 697 kB     00:00    
(179/179): python3-libxml2-2.9.7-15.el8_7.1.x86 1.9 MB/s | 238 kB     00:00    
--------------------------------------------------------------------------------
Total                                            11 MB/s |  98 MB     00:08     
Red Hat Enterprise Linux - BaseOS               3.1 MB/s | 3.1 kB     00:00    
Importing GPG key 0xFD431D51:
 Userid     : "Red Hat, Inc. (release key 2) <security@redhat.com>"
 Fingerprint: 567E 347A D004 4ADE 55BA 8A5F 199E 2F91 FD43 1D51
 From       : /usr/share/distribution-gpg-keys/redhat/RPM-GPG-KEY-redhat8-release
Key imported successfully
Importing GPG key 0x2FA658E0:
 Userid     : "Red Hat, Inc. (auxiliary key) <security@redhat.com>"
 Fingerprint: 43A6 E49C 4A38 F4BE 9ABF 2A53 4568 9C88 2FA6 58E0
 From       : /usr/share/distribution-gpg-keys/redhat/RPM-GPG-KEY-redhat8-release
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.8-6.el8.x86_64                            1/1 
  Preparing        :                                                        1/1 
  Installing       : libgcc-8.5.0-16.el8_7.x86_64                         1/179 
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warning: /etc/hosts created as /etc/hosts.rpmnew

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warning: /etc/dnf/dnf.conf created as /etc/dnf/dnf.conf.rpmnew

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/var/tmp/rpm-tmp.I6uXyt: line 16: find: command not found
/var/tmp/rpm-tmp.I6uXyt: line 16: xargs: command not found

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  Verifying        : libnsl2-1.2.0-2.20180605git4a062cf.el8.x86_64       19/179 
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  Verifying        : publicsuffix-list-dafsa-20180723-1.el8.noarch       21/179 
  Verifying        : python3-decorator-4.2.1-2.el8.noarch                22/179 
  Verifying        : python3-idna-2.5-5.el8.noarch                       23/179 
  Verifying        : python3-pysocks-1.6.8-3.el8.noarch                  24/179 
  Verifying        : python3-dateutil-1:2.6.1-6.el8.noarch               25/179 
  Verifying        : libacl-2.2.53-1.el8.x86_64                          26/179 
  Verifying        : basesystem-11-5.el8.noarch                          27/179 
  Verifying        : libgpg-error-1.31-1.el8.x86_64                      28/179 
  Verifying        : python3-chardet-3.0.4-7.el8.noarch                  29/179 
  Verifying        : python3-six-1.11.0-8.el8.noarch                     30/179 
  Verifying        : python3-dmidecode-3.12.2-15.el8.x86_64              31/179 
  Verifying        : gmp-1:6.1.2-10.el8.x86_64                           32/179 
  Verifying        : python3-requests-2.20.0-2.1.el8_1.noarch            33/179 
  Verifying        : libidn2-2.2.0-1.el8.x86_64                          34/179 
  Verifying        : python3-dbus-1.2.4-15.el8.x86_64                    35/179 
  Verifying        : libnghttp2-1.33.0-3.el8_2.1.x86_64                  36/179 
  Verifying        : libzstd-1.4.4-1.el8.x86_64                          37/179 
  Verifying        : libreport-filesystem-2.9.5-15.el8.x86_64            38/179 
  Verifying        : python3-setuptools-wheel-39.2.0-6.el8.noarch        39/179 
  Verifying        : libusbx-1.0.23-4.el8.x86_64                         40/179 
  Verifying        : python3-gobject-base-3.28.3-2.el8.x86_64            41/179 
  Verifying        : platform-python-setuptools-39.2.0-6.el8.noarch      42/179 
  Verifying        : p11-kit-trust-0.23.22-1.el8.x86_64                  43/179 
  Verifying        : python3-urllib3-1.24.2-5.el8.noarch                 44/179 
  Verifying        : libpsl-0.20.2-6.el8.x86_64                          45/179 
  Verifying        : librhsm-0.0.3-4.el8.x86_64                          46/179 
  Verifying        : popt-1.18-1.el8.x86_64                              47/179 
  Verifying        : brotli-1.0.6-3.el8.x86_64                           48/179 
  Verifying        : lz4-libs-1.8.3-3.el8_4.x86_64                       49/179 
  Verifying        : ima-evm-utils-1.3.2-12.el8.x86_64                   50/179 
  Verifying        : p11-kit-0.23.22-1.el8.x86_64                        51/179 
  Verifying        : tpm2-tss-2.3.2-4.el8.x86_64                         52/179 
  Verifying        : pcre-8.42-6.el8.x86_64                              53/179 
  Verifying        : openldap-2.4.46-18.el8.x86_64                       54/179 
  Verifying        : nettle-3.4.1-7.el8.x86_64                           55/179 
  Verifying        : ncurses-libs-6.1-9.20180224.el8.x86_64              56/179 
  Verifying        : libmodulemd-2.13.0-1.el8.x86_64                     57/179 
  Verifying        : libdb-utils-5.3.28-42.el8_4.x86_64                  58/179 
  Verifying        : filesystem-3.8-6.el8.x86_64                         59/179 
  Verifying        : usermode-1.113-2.el8.x86_64                         60/179 
  Verifying        : libxcrypt-4.1.1-6.el8.x86_64                        61/179 
  Verifying        : chkconfig-1.19.1-1.el8.x86_64                       62/179 
  Verifying        : libcap-ng-0.7.11-1.el8.x86_64                       63/179 
  Verifying        : libdb-5.3.28-42.el8_4.x86_64                        64/179 
  Verifying        : ncurses-6.1-9.20180224.el8.x86_64                   65/179 
  Verifying        : libsepol-2.9-3.el8.x86_64                           66/179 
  Verifying        : gzip-1.9-13.el8_5.x86_64                            67/179 
  Verifying        : dmidecode-1:3.3-4.el8.x86_64                        68/179 
  Verifying        : passwd-0.80-4.el8.x86_64                            69/179 
  Verifying        : keyutils-libs-1.5.10-9.el8.x86_64                   70/179 
  Verifying        : ncurses-base-6.1-9.20180224.el8.noarch              71/179 
  Verifying        : cyrus-sasl-lib-2.1.27-6.el8_5.x86_64                72/179 
  Verifying        : lua-libs-5.3.4-12.el8.x86_64                        73/179 
  Verifying        : gpgme-1.13.1-11.el8.x86_64                          74/179 
  Verifying        : sed-4.5-5.el8.x86_64                                75/179 
  Verifying        : kmod-libs-25-19.el8.x86_64                          76/179 
  Verifying        : python3-gpg-1.13.1-11.el8.x86_64                    77/179 
  Verifying        : python3-ethtool-0.14-5.el8.x86_64                   78/179 
  Verifying        : python3-libcomps-0.1.18-1.el8.x86_64                79/179 
  Verifying        : libffi-3.1-23.el8.x86_64                            80/179 
  Verifying        : json-c-0.13.1-3.el8.x86_64                          81/179 
  Verifying        : python3-pip-wheel-9.0.3-22.el8.noarch               82/179 
  Verifying        : libssh-0.9.6-3.el8.x86_64                           83/179 
  Verifying        : libseccomp-2.5.2-1.el8.x86_64                       84/179 
  Verifying        : libcomps-0.1.18-1.el8.x86_64                        85/179 
  Verifying        : libuser-0.62-24.el8.x86_64                          86/179 
  Verifying        : cryptsetup-libs-2.3.7-2.el8.x86_64                  87/179 
  Verifying        : gawk-4.2.1-4.el8.x86_64                             88/179 
  Verifying        : xz-libs-5.2.4-4.el8_6.x86_64                        89/179 
  Verifying        : crypto-policies-20211116-1.gitae470d6.el8.noarch    90/179 
  Verifying        : info-6.5-7.el8.x86_64                               91/179 
  Verifying        : libssh-config-0.9.6-3.el8.noarch                    92/179 
  Verifying        : coreutils-8.30-13.el8.x86_64                        93/179 
  Verifying        : dnf-data-4.7.0-11.el8.noarch                        94/179 
  Verifying        : libpwquality-1.4.4-5.el8.x86_64                     95/179 
  Verifying        : glibc-all-langpacks-2.28-211.el8.x86_64             96/179 
  Verifying        : subscription-manager-1.28.32-1.el8.x86_64           97/179 
  Verifying        : libksba-1.3.5-8.el8_6.x86_64                        98/179 
  Verifying        : libverto-0.3.2-2.el8.x86_64                         99/179 
  Verifying        : gdbm-libs-1:1.18-2.el8.x86_64                      100/179 
  Verifying        : gnupg2-2.2.20-3.el8_6.x86_64                       101/179 
  Verifying        : coreutils-common-8.30-13.el8.x86_64                102/179 
  Verifying        : libtirpc-1.1.4-8.el8.x86_64                        103/179 
  Verifying        : virt-what-1.25-1.el8.x86_64                        104/179 
  Verifying        : ca-certificates-2022.2.54-80.2.el8_6.noarch        105/179 
  Verifying        : pcre2-10.32-3.el8_6.x86_64                         106/179 
  Verifying        : pam-1.3.1-22.el8.x86_64                            107/179 
  Verifying        : libgcrypt-1.8.5-7.el8_6.x86_64                     108/179 
  Verifying        : openssl-libs-1:1.1.1k-7.el8_6.x86_64               109/179 
  Verifying        : python3-dnf-4.7.0-11.el8.noarch                    110/179 
  Verifying        : libcom_err-1.45.6-5.el8.x86_64                     111/179 
  Verifying        : libsemanage-2.9-9.el8_6.x86_64                     112/179 
  Verifying        : bash-4.4.20-4.el8_6.x86_64                         113/179 
  Verifying        : device-mapper-8:1.02.181-6.el8.x86_64              114/179 
  Verifying        : gnutls-3.6.16-5.el8_6.x86_64                       115/179 
  Verifying        : libdnf-0.63.0-11.1.el8.x86_64                      116/179 
  Verifying        : elfutils-libelf-0.187-4.el8.x86_64                 117/179 
  Verifying        : file-libs-5.33-21.el8.x86_64                       118/179 
  Verifying        : dnf-plugins-core-4.0.21-14.1.el8.noarch            119/179 
  Verifying        : python3-dnf-plugins-core-4.0.21-14.1.el8.noarch    120/179 
  Verifying        : librepo-1.14.2-3.el8.x86_64                        121/179 
  Verifying        : python3-syspurpose-1.28.32-1.el8.x86_64            122/179 
  Verifying        : python3-cloud-what-1.28.32-1.el8.x86_64            123/179 
  Verifying        : which-2.21-18.el8.x86_64                           124/179 
  Verifying        : gdbm-1:1.18-2.el8.x86_64                           125/179 
  Verifying        : libnl3-3.7.0-1.el8.x86_64                          126/179 
  Verifying        : python3-hawkey-0.63.0-11.1.el8.x86_64              127/179 
  Verifying        : glibc-2.28-211.el8.x86_64                          128/179 
  Verifying        : glibc-common-2.28-211.el8.x86_64                   129/179 
  Verifying        : setup-2.12.2-7.el8.noarch                          130/179 
  Verifying        : elfutils-libs-0.187-4.el8.x86_64                   131/179 
  Verifying        : libarchive-3.3.3-4.el8.x86_64                      132/179 
  Verifying        : dnf-plugin-subscription-manager-1.28.32-1.el8.x8   133/179 
  Verifying        : dnf-4.7.0-11.el8.noarch                            134/179 
  Verifying        : audit-libs-3.0.7-4.el8.x86_64                      135/179 
  Verifying        : device-mapper-libs-8:1.02.181-6.el8.x86_64         136/179 
  Verifying        : python3-librepo-1.14.2-3.el8.x86_64                137/179 
  Verifying        : subscription-manager-rhsm-certificates-1.28.32-1   138/179 
  Verifying        : python3-subscription-manager-rhsm-1.28.32-1.el8.   139/179 
  Verifying        : python3-libdnf-0.63.0-11.1.el8.x86_64              140/179 
  Verifying        : libcap-2.48-4.el8.x86_64                           141/179 
  Verifying        : elfutils-default-yama-scope-0.187-4.el8.noarch     142/179 
  Verifying        : shadow-utils-2:4.6-17.el8.x86_64                   143/179 
  Verifying        : glib2-2.56.4-159.el8.x86_64                        144/179 
  Verifying        : libselinux-2.9-6.el8.x86_64                        145/179 
  Verifying        : redhat-release-8.7-0.3.el8.x86_64                  146/179 
  Verifying        : rpm-libs-4.14.3-24.el8_7.x86_64                    147/179 
  Verifying        : rpm-4.14.3-24.el8_7.x86_64                         148/179 
  Verifying        : python3-rpm-4.14.3-24.el8_7.x86_64                 149/179 
  Verifying        : python3-libs-3.6.8-48.el8_7.x86_64                 150/179 
  Verifying        : rpm-build-libs-4.14.3-24.el8_7.x86_64              151/179 
  Verifying        : platform-python-3.6.8-48.el8_7.x86_64              152/179 
  Verifying        : krb5-libs-1.18.2-22.el8_7.x86_64                   153/179 
  Verifying        : tzdata-2022g-1.el8.noarch                          154/179 
  Verifying        : libsolv-0.7.20-4.el8_7.x86_64                      155/179 
  Verifying        : dbus-tools-1:1.12.8-23.el8_7.1.x86_64              156/179 
  Verifying        : curl-7.61.1-25.el8_7.1.x86_64                      157/179 
  Verifying        : libuuid-2.32.1-39.el8_7.x86_64                     158/179 
  Verifying        : libgcc-8.5.0-16.el8_7.x86_64                       159/179 
  Verifying        : util-linux-2.32.1-39.el8_7.x86_64                  160/179 
  Verifying        : expat-2.2.5-10.el8_7.1.x86_64                      161/179 
  Verifying        : systemd-pam-239-68.el8_7.2.x86_64                  162/179 
  Verifying        : libtasn1-4.13-4.el8_7.x86_64                       163/179 
  Verifying        : libblkid-2.32.1-39.el8_7.x86_64                    164/179 
  Verifying        : dbus-libs-1:1.12.8-23.el8_7.1.x86_64               165/179 
  Verifying        : systemd-239-68.el8_7.2.x86_64                      166/179 
  Verifying        : libstdc++-8.5.0-16.el8_7.x86_64                    167/179 
  Verifying        : dbus-daemon-1:1.12.8-23.el8_7.1.x86_64             168/179 
  Verifying        : libcurl-7.61.1-25.el8_7.1.x86_64                   169/179 
  Verifying        : libmount-2.32.1-39.el8_7.x86_64                    170/179 
  Verifying        : systemd-libs-239-68.el8_7.2.x86_64                 171/179 
  Verifying        : zlib-1.2.11-21.el8_7.x86_64                        172/179 
  Verifying        : dbus-1:1.12.8-23.el8_7.1.x86_64                    173/179 
  Verifying        : sqlite-libs-3.26.0-17.el8_7.x86_64                 174/179 
  Verifying        : dbus-common-1:1.12.8-23.el8_7.1.noarch             175/179 
  Verifying        : libfdisk-2.32.1-39.el8_7.x86_64                    176/179 
  Verifying        : libsmartcols-2.32.1-39.el8_7.x86_64                177/179 
  Verifying        : libxml2-2.9.7-15.el8_7.1.x86_64                    178/179 
  Verifying        : python3-libxml2-2.9.7-15.el8_7.1.x86_64            179/179 
Installed products updated.

Installed:
  acl-2.2.53-1.el8.x86_64                                                       
  audit-libs-3.0.7-4.el8.x86_64                                                 
  basesystem-11-5.el8.noarch                                                    
  bash-4.4.20-4.el8_6.x86_64                                                    
  brotli-1.0.6-3.el8.x86_64                                                     
  bzip2-libs-1.0.6-26.el8.x86_64                                                
  ca-certificates-2022.2.54-80.2.el8_6.noarch                                   
  chkconfig-1.19.1-1.el8.x86_64                                                 
  coreutils-8.30-13.el8.x86_64                                                  
  coreutils-common-8.30-13.el8.x86_64                                           
  cracklib-2.9.6-15.el8.x86_64                                                  
  cracklib-dicts-2.9.6-15.el8.x86_64                                            
  crypto-policies-20211116-1.gitae470d6.el8.noarch                              
  cryptsetup-libs-2.3.7-2.el8.x86_64                                            
  curl-7.61.1-25.el8_7.1.x86_64                                                 
  cyrus-sasl-lib-2.1.27-6.el8_5.x86_64                                          
  dbus-1:1.12.8-23.el8_7.1.x86_64                                               
  dbus-common-1:1.12.8-23.el8_7.1.noarch                                        
  dbus-daemon-1:1.12.8-23.el8_7.1.x86_64                                        
  dbus-glib-0.110-2.el8.x86_64                                                  
  dbus-libs-1:1.12.8-23.el8_7.1.x86_64                                          
  dbus-tools-1:1.12.8-23.el8_7.1.x86_64                                         
  device-mapper-8:1.02.181-6.el8.x86_64                                         
  device-mapper-libs-8:1.02.181-6.el8.x86_64                                    
  dmidecode-1:3.3-4.el8.x86_64                                                  
  dnf-4.7.0-11.el8.noarch                                                       
  dnf-data-4.7.0-11.el8.noarch                                                  
  dnf-plugin-subscription-manager-1.28.32-1.el8.x86_64                          
  dnf-plugins-core-4.0.21-14.1.el8.noarch                                       
  elfutils-default-yama-scope-0.187-4.el8.noarch                                
  elfutils-libelf-0.187-4.el8.x86_64                                            
  elfutils-libs-0.187-4.el8.x86_64                                              
  expat-2.2.5-10.el8_7.1.x86_64                                                 
  file-libs-5.33-21.el8.x86_64                                                  
  filesystem-3.8-6.el8.x86_64                                                   
  gawk-4.2.1-4.el8.x86_64                                                       
  gdbm-1:1.18-2.el8.x86_64                                                      
  gdbm-libs-1:1.18-2.el8.x86_64                                                 
  glib2-2.56.4-159.el8.x86_64                                                   
  glibc-2.28-211.el8.x86_64                                                     
  glibc-all-langpacks-2.28-211.el8.x86_64                                       
  glibc-common-2.28-211.el8.x86_64                                              
  gmp-1:6.1.2-10.el8.x86_64                                                     
  gnupg2-2.2.20-3.el8_6.x86_64                                                  
  gnutls-3.6.16-5.el8_6.x86_64                                                  
  gobject-introspection-1.56.1-1.el8.x86_64                                     
  gpgme-1.13.1-11.el8.x86_64                                                    
  grep-3.1-6.el8.x86_64                                                         
  gzip-1.9-13.el8_5.x86_64                                                      
  ima-evm-utils-1.3.2-12.el8.x86_64                                             
  info-6.5-7.el8.x86_64                                                         
  json-c-0.13.1-3.el8.x86_64                                                    
  json-glib-1.4.4-1.el8.x86_64                                                  
  keyutils-libs-1.5.10-9.el8.x86_64                                             
  kmod-libs-25-19.el8.x86_64                                                    
  krb5-libs-1.18.2-22.el8_7.x86_64                                              
  libacl-2.2.53-1.el8.x86_64                                                    
  libarchive-3.3.3-4.el8.x86_64                                                 
  libassuan-2.5.1-3.el8.x86_64                                                  
  libattr-2.4.48-3.el8.x86_64                                                   
  libblkid-2.32.1-39.el8_7.x86_64                                               
  libcap-2.48-4.el8.x86_64                                                      
  libcap-ng-0.7.11-1.el8.x86_64                                                 
  libcom_err-1.45.6-5.el8.x86_64                                                
  libcomps-0.1.18-1.el8.x86_64                                                  
  libcurl-7.61.1-25.el8_7.1.x86_64                                              
  libdb-5.3.28-42.el8_4.x86_64                                                  
  libdb-utils-5.3.28-42.el8_4.x86_64                                            
  libdnf-0.63.0-11.1.el8.x86_64                                                 
  libfdisk-2.32.1-39.el8_7.x86_64                                               
  libffi-3.1-23.el8.x86_64                                                      
  libgcc-8.5.0-16.el8_7.x86_64                                                  
  libgcrypt-1.8.5-7.el8_6.x86_64                                                
  libgpg-error-1.31-1.el8.x86_64                                                
  libidn2-2.2.0-1.el8.x86_64                                                    
  libksba-1.3.5-8.el8_6.x86_64                                                  
  libmodulemd-2.13.0-1.el8.x86_64                                               
  libmount-2.32.1-39.el8_7.x86_64                                               
  libnghttp2-1.33.0-3.el8_2.1.x86_64                                            
  libnl3-3.7.0-1.el8.x86_64                                                     
  libnsl2-1.2.0-2.20180605git4a062cf.el8.x86_64                                 
  libpsl-0.20.2-6.el8.x86_64                                                    
  libpwquality-1.4.4-5.el8.x86_64                                               
  librepo-1.14.2-3.el8.x86_64                                                   
  libreport-filesystem-2.9.5-15.el8.x86_64                                      
  librhsm-0.0.3-4.el8.x86_64                                                    
  libseccomp-2.5.2-1.el8.x86_64                                                 
  libselinux-2.9-6.el8.x86_64                                                   
  libsemanage-2.9-9.el8_6.x86_64                                                
  libsepol-2.9-3.el8.x86_64                                                     
  libsigsegv-2.11-5.el8.x86_64                                                  
  libsmartcols-2.32.1-39.el8_7.x86_64                                           
  libsolv-0.7.20-4.el8_7.x86_64                                                 
  libssh-0.9.6-3.el8.x86_64                                                     
  libssh-config-0.9.6-3.el8.noarch                                              
  libstdc++-8.5.0-16.el8_7.x86_64                                               
  libtasn1-4.13-4.el8_7.x86_64                                                  
  libtirpc-1.1.4-8.el8.x86_64                                                   
  libunistring-0.9.9-3.el8.x86_64                                               
  libusbx-1.0.23-4.el8.x86_64                                                   
  libuser-0.62-24.el8.x86_64                                                    
  libutempter-1.1.6-14.el8.x86_64                                               
  libuuid-2.32.1-39.el8_7.x86_64                                                
  libverto-0.3.2-2.el8.x86_64                                                   
  libxcrypt-4.1.1-6.el8.x86_64                                                  
  libxml2-2.9.7-15.el8_7.1.x86_64                                               
  libyaml-0.1.7-5.el8.x86_64                                                    
  libzstd-1.4.4-1.el8.x86_64                                                    
  lua-libs-5.3.4-12.el8.x86_64                                                  
  lz4-libs-1.8.3-3.el8_4.x86_64                                                 
  mpfr-3.1.6-1.el8.x86_64                                                       
  ncurses-6.1-9.20180224.el8.x86_64                                             
  ncurses-base-6.1-9.20180224.el8.noarch                                        
  ncurses-libs-6.1-9.20180224.el8.x86_64                                        
  nettle-3.4.1-7.el8.x86_64                                                     
  npth-1.5-4.el8.x86_64                                                         
  openldap-2.4.46-18.el8.x86_64                                                 
  openssl-libs-1:1.1.1k-7.el8_6.x86_64                                          
  p11-kit-0.23.22-1.el8.x86_64                                                  
  p11-kit-trust-0.23.22-1.el8.x86_64                                            
  pam-1.3.1-22.el8.x86_64                                                       
  passwd-0.80-4.el8.x86_64                                                      
  pcre-8.42-6.el8.x86_64                                                        
  pcre2-10.32-3.el8_6.x86_64                                                    
  platform-python-3.6.8-48.el8_7.x86_64                                         
  platform-python-setuptools-39.2.0-6.el8.noarch                                
  popt-1.18-1.el8.x86_64                                                        
  publicsuffix-list-dafsa-20180723-1.el8.noarch                                 
  python3-chardet-3.0.4-7.el8.noarch                                            
  python3-cloud-what-1.28.32-1.el8.x86_64                                       
  python3-dateutil-1:2.6.1-6.el8.noarch                                         
  python3-dbus-1.2.4-15.el8.x86_64                                              
  python3-decorator-4.2.1-2.el8.noarch                                          
  python3-dmidecode-3.12.2-15.el8.x86_64                                        
  python3-dnf-4.7.0-11.el8.noarch                                               
  python3-dnf-plugins-core-4.0.21-14.1.el8.noarch                               
  python3-ethtool-0.14-5.el8.x86_64                                             
  python3-gobject-base-3.28.3-2.el8.x86_64                                      
  python3-gpg-1.13.1-11.el8.x86_64                                              
  python3-hawkey-0.63.0-11.1.el8.x86_64                                         
  python3-idna-2.5-5.el8.noarch                                                 
  python3-iniparse-0.4-31.el8.noarch                                            
  python3-inotify-0.9.6-13.el8.noarch                                           
  python3-libcomps-0.1.18-1.el8.x86_64                                          
  python3-libdnf-0.63.0-11.1.el8.x86_64                                         
  python3-librepo-1.14.2-3.el8.x86_64                                           
  python3-libs-3.6.8-48.el8_7.x86_64                                            
  python3-libxml2-2.9.7-15.el8_7.1.x86_64                                       
  python3-pip-wheel-9.0.3-22.el8.noarch                                         
  python3-pysocks-1.6.8-3.el8.noarch                                            
  python3-requests-2.20.0-2.1.el8_1.noarch                                      
  python3-rpm-4.14.3-24.el8_7.x86_64                                            
  python3-setuptools-wheel-39.2.0-6.el8.noarch                                  
  python3-six-1.11.0-8.el8.noarch                                               
  python3-subscription-manager-rhsm-1.28.32-1.el8.x86_64                        
  python3-syspurpose-1.28.32-1.el8.x86_64                                       
  python3-urllib3-1.24.2-5.el8.noarch                                           
  readline-7.0-10.el8.x86_64                                                    
  redhat-release-8.7-0.3.el8.x86_64                                             
  rpm-4.14.3-24.el8_7.x86_64                                                    
  rpm-build-libs-4.14.3-24.el8_7.x86_64                                         
  rpm-libs-4.14.3-24.el8_7.x86_64                                               
  sed-4.5-5.el8.x86_64                                                          
  setup-2.12.2-7.el8.noarch                                                     
  shadow-utils-2:4.6-17.el8.x86_64                                              
  sqlite-libs-3.26.0-17.el8_7.x86_64                                            
  subscription-manager-1.28.32-1.el8.x86_64                                     
  subscription-manager-rhsm-certificates-1.28.32-1.el8.x86_64                   
  systemd-239-68.el8_7.2.x86_64                                                 
  systemd-libs-239-68.el8_7.2.x86_64                                            
  systemd-pam-239-68.el8_7.2.x86_64                                             
  tpm2-tss-2.3.2-4.el8.x86_64                                                   
  tzdata-2022g-1.el8.noarch                                                     
  usermode-1.113-2.el8.x86_64                                                   
  util-linux-2.32.1-39.el8_7.x86_64                                             
  virt-what-1.25-1.el8.x86_64                                                   
  which-2.21-18.el8.x86_64                                                      
  xz-libs-5.2.4-4.el8_6.x86_64                                                  
  zlib-1.2.11-21.el8_7.x86_64                                                   

Complete!
Finish(bootstrap): dnf install
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/rhel+epel-8-x86_64-1675244409.748214/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start: dnf install
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity

This system is not registered with an entitlement server. You can use subscription-manager to register.

Copr repository                                 184 kB/s |  14 kB     00:00    
Red Hat Enterprise Linux - BaseOS                40 MB/s |  56 MB     00:01    
Red Hat Enterprise Linux - AppStream             38 MB/s |  52 MB     00:01    
Red Hat Enterprise Linux - CodeReady Linux Buil  10 MB/s | 8.8 MB     00:00    
Extra Packages for Enterprise Linux 8 - x86_64   30 MB/s |  13 MB     00:00    
Dependencies resolved.
===========================================================================================
 Package                       Arch    Version                        Repository       Size
===========================================================================================
Installing:
 bash                          x86_64  4.4.20-4.el8_6                 rhel-baseos     1.5 M
 bzip2                         x86_64  1.0.6-26.el8                   rhel-baseos      60 k
 coreutils                     x86_64  8.30-13.el8                    rhel-baseos     1.2 M
 cpio                          x86_64  2.12-11.el8                    rhel-baseos     266 k
 diffutils                     x86_64  3.6-6.el8                      rhel-baseos     359 k
 epel-rpm-macros               noarch  8-35                           epel             24 k
 findutils                     x86_64  1:4.6.0-20.el8                 rhel-baseos     528 k
 gawk                          x86_64  4.2.1-4.el8                    rhel-baseos     1.1 M
 gcc                           x86_64  8.5.0-16.el8_7                 rhel-appstream   23 M
 gcc-c++                       x86_64  8.5.0-16.el8_7                 rhel-appstream   12 M
 grep                          x86_64  3.1-6.el8                      rhel-baseos     274 k
 gzip                          x86_64  1.9-13.el8_5                   rhel-baseos     167 k
 info                          x86_64  6.5-7.el8                      rhel-baseos     198 k
 make                          x86_64  1:4.2.1-11.el8                 rhel-baseos     498 k
 patch                         x86_64  2.7.6-11.el8                   rhel-baseos     138 k
 redhat-release                x86_64  8.7-0.3.el8                    rhel-baseos      44 k
 redhat-rpm-config             noarch  130-1.el8                      rhel-appstream   90 k
 rpm-build                     x86_64  4.14.3-24.el8_7                rhel-appstream  174 k
 sed                           x86_64  4.5-5.el8                      rhel-baseos     298 k
 shadow-utils                  x86_64  2:4.6-17.el8                   rhel-baseos     1.2 M
 tar                           x86_64  2:1.30-6.el8                   rhel-baseos     838 k
 unzip                         x86_64  6.0-46.el8                     rhel-baseos     196 k
 util-linux                    x86_64  2.32.1-39.el8_7                rhel-baseos     2.5 M
 which                         x86_64  2.21-18.el8                    rhel-baseos      50 k
 xz                            x86_64  5.2.4-4.el8_6                  rhel-baseos     153 k
Installing dependencies:
 annobin                       x86_64  10.67-3.el8                    rhel-appstream  955 k
 ansible-srpm-macros           noarch  1-8.1.el8                      epel            8.5 k
 audit-libs                    x86_64  3.0.7-4.el8                    rhel-baseos     123 k
 basesystem                    noarch  11-5.el8                       rhel-baseos      11 k
 binutils                      x86_64  2.30-117.el8                   rhel-baseos     5.8 M
 brotli                        x86_64  1.0.6-3.el8                    rhel-baseos     323 k
 bzip2-libs                    x86_64  1.0.6-26.el8                   rhel-baseos      48 k
 ca-certificates               noarch  2022.2.54-80.2.el8_6           rhel-baseos     921 k
 chkconfig                     x86_64  1.19.1-1.el8                   rhel-baseos     198 k
 coreutils-common              x86_64  8.30-13.el8                    rhel-baseos     2.0 M
 cpp                           x86_64  8.5.0-16.el8_7                 rhel-appstream   10 M
 cracklib                      x86_64  2.9.6-15.el8                   rhel-baseos      93 k
 cracklib-dicts                x86_64  2.9.6-15.el8                   rhel-baseos     4.0 M
 crypto-policies               noarch  20211116-1.gitae470d6.el8      rhel-baseos      64 k
 curl                          x86_64  7.61.1-25.el8_7.1              rhel-baseos     352 k
 cyrus-sasl-lib                x86_64  2.1.27-6.el8_5                 rhel-baseos     123 k
 dwz                           x86_64  0.12-10.el8                    rhel-appstream  109 k
 efi-srpm-macros               noarch  3-3.el8                        rhel-appstream   22 k
 elfutils                      x86_64  0.187-4.el8                    rhel-baseos     543 k
 elfutils-default-yama-scope   noarch  0.187-4.el8                    rhel-baseos      52 k
 elfutils-libelf               x86_64  0.187-4.el8                    rhel-baseos     231 k
 elfutils-libs                 x86_64  0.187-4.el8                    rhel-baseos     297 k
 expat                         x86_64  2.2.5-10.el8_7.1               rhel-baseos     113 k
 file                          x86_64  5.33-21.el8                    rhel-baseos      77 k
 file-libs                     x86_64  5.33-21.el8                    rhel-baseos     543 k
 filesystem                    x86_64  3.8-6.el8                      rhel-baseos     1.1 M
 fpc-srpm-macros               noarch  1.3-1.el8                      epel            8.2 k
 gc                            x86_64  7.6.4-3.el8                    rhel-appstream  109 k
 gcc-plugin-annobin            x86_64  8.5.0-16.el8_7                 rhel-appstream   35 k
 gdb-headless                  x86_64  8.2-19.el8                     rhel-appstream  3.7 M
 gdbm                          x86_64  1:1.18-2.el8                   rhel-baseos     130 k
 gdbm-libs                     x86_64  1:1.18-2.el8                   rhel-baseos      60 k
 ghc-srpm-macros               noarch  1.4.2-7.el8                    rhel-appstream  9.4 k
 glib2                         x86_64  2.56.4-159.el8                 rhel-baseos     2.5 M
 glibc                         x86_64  2.28-211.el8                   rhel-baseos     2.2 M
 glibc-all-langpacks           x86_64  2.28-211.el8                   rhel-baseos      26 M
 glibc-common                  x86_64  2.28-211.el8                   rhel-baseos     1.0 M
 glibc-devel                   x86_64  2.28-211.el8                   rhel-baseos      82 k
 glibc-gconv-extra             x86_64  2.28-211.el8                   rhel-baseos     1.5 M
 glibc-headers                 x86_64  2.28-211.el8                   rhel-baseos     486 k
 gmp                           x86_64  1:6.1.2-10.el8                 rhel-baseos     321 k
 gnupg2                        x86_64  2.2.20-3.el8_6                 rhel-baseos     2.4 M
 gnutls                        x86_64  3.6.16-5.el8_6                 rhel-baseos     1.0 M
 go-srpm-macros                noarch  2-17.el8                       rhel-appstream   13 k
 guile                         x86_64  5:2.0.14-7.el8                 rhel-appstream  3.5 M
 ima-evm-utils                 x86_64  1.3.2-12.el8                   rhel-baseos      64 k
 isl                           x86_64  0.16.1-6.el8                   rhel-appstream  841 k
 kernel-headers                x86_64  4.18.0-425.10.1.el8_7          rhel-baseos      10 M
 keyutils-libs                 x86_64  1.5.10-9.el8                   rhel-baseos      34 k
 krb5-libs                     x86_64  1.18.2-22.el8_7                rhel-baseos     840 k
 libacl                        x86_64  2.2.53-1.el8                   rhel-baseos      35 k
 libarchive                    x86_64  3.3.3-4.el8                    rhel-baseos     360 k
 libassuan                     x86_64  2.5.1-3.el8                    rhel-baseos      83 k
 libatomic_ops                 x86_64  7.6.2-3.el8                    rhel-appstream   38 k
 libattr                       x86_64  2.4.48-3.el8                   rhel-baseos      27 k
 libbabeltrace                 x86_64  1.5.4-4.el8                    rhel-baseos     200 k
 libblkid                      x86_64  2.32.1-39.el8_7                rhel-baseos     220 k
 libcap                        x86_64  2.48-4.el8                     rhel-baseos      74 k
 libcap-ng                     x86_64  0.7.11-1.el8                   rhel-baseos      33 k
 libcom_err                    x86_64  1.45.6-5.el8                   rhel-baseos      49 k
 libcurl                       x86_64  7.61.1-25.el8_7.1              rhel-baseos     302 k
 libdb                         x86_64  5.3.28-42.el8_4                rhel-baseos     751 k
 libdb-utils                   x86_64  5.3.28-42.el8_4                rhel-baseos     150 k
 libfdisk                      x86_64  2.32.1-39.el8_7                rhel-baseos     253 k
 libffi                        x86_64  3.1-23.el8                     rhel-baseos      37 k
 libgcc                        x86_64  8.5.0-16.el8_7                 rhel-baseos      81 k
 libgcrypt                     x86_64  1.8.5-7.el8_6                  rhel-baseos     463 k
 libgomp                       x86_64  8.5.0-16.el8_7                 rhel-baseos     207 k
 libgpg-error                  x86_64  1.31-1.el8                     rhel-baseos     242 k
 libidn2                       x86_64  2.2.0-1.el8                    rhel-baseos      94 k
 libipt                        x86_64  1.6.1-8.el8                    rhel-appstream   50 k
 libksba                       x86_64  1.3.5-8.el8_6                  rhel-baseos     134 k
 libmount                      x86_64  2.32.1-39.el8_7                rhel-baseos     236 k
 libmpc                        x86_64  1.1.0-9.1.el8                  rhel-appstream   61 k
 libnghttp2                    x86_64  1.33.0-3.el8_2.1               rhel-baseos      77 k
 libnsl2                       x86_64  1.2.0-2.20180605git4a062cf.el8 rhel-baseos      58 k
 libpkgconf                    x86_64  1.4.2-1.el8                    rhel-baseos      35 k
 libpsl                        x86_64  0.20.2-6.el8                   rhel-baseos      61 k
 libpwquality                  x86_64  1.4.4-5.el8                    rhel-baseos     107 k
 libselinux                    x86_64  2.9-6.el8                      rhel-baseos     165 k
 libsemanage                   x86_64  2.9-9.el8_6                    rhel-baseos     168 k
 libsepol                      x86_64  2.9-3.el8                      rhel-baseos     340 k
 libsigsegv                    x86_64  2.11-5.el8                     rhel-baseos      30 k
 libsmartcols                  x86_64  2.32.1-39.el8_7                rhel-baseos     179 k
 libssh                        x86_64  0.9.6-3.el8                    rhel-baseos     216 k
 libssh-config                 noarch  0.9.6-3.el8                    rhel-baseos      19 k
 libstdc++                     x86_64  8.5.0-16.el8_7                 rhel-baseos     454 k
 libstdc++-devel               x86_64  8.5.0-16.el8_7                 rhel-appstream  2.1 M
 libtasn1                      x86_64  4.13-4.el8_7                   rhel-baseos      76 k
 libtirpc                      x86_64  1.1.4-8.el8                    rhel-baseos     113 k
 libtool-ltdl                  x86_64  2.4.6-25.el8                   rhel-baseos      58 k
 libunistring                  x86_64  0.9.9-3.el8                    rhel-baseos     422 k
 libusbx                       x86_64  1.0.23-4.el8                   rhel-baseos      74 k
 libutempter                   x86_64  1.1.6-14.el8                   rhel-baseos      32 k
 libuuid                       x86_64  2.32.1-39.el8_7                rhel-baseos      98 k
 libverto                      x86_64  0.3.2-2.el8                    rhel-baseos      24 k
 libxcrypt                     x86_64  4.1.1-6.el8                    rhel-baseos      73 k
 libxcrypt-devel               x86_64  4.1.1-6.el8                    rhel-baseos      25 k
 libxml2                       x86_64  2.9.7-15.el8_7.1               rhel-baseos     697 k
 libzstd                       x86_64  1.4.4-1.el8                    rhel-baseos     266 k
 lua-libs                      x86_64  5.3.4-12.el8                   rhel-baseos     118 k
 lua-srpm-macros               noarch  1-3.el8                        epel            8.1 k
 lz4-libs                      x86_64  1.8.3-3.el8_4                  rhel-baseos      66 k
 mpfr                          x86_64  3.1.6-1.el8                    rhel-baseos     221 k
 ncurses                       x86_64  6.1-9.20180224.el8             rhel-baseos     387 k
 ncurses-base                  noarch  6.1-9.20180224.el8             rhel-baseos      81 k
 ncurses-libs                  x86_64  6.1-9.20180224.el8             rhel-baseos     334 k
 nettle                        x86_64  3.4.1-7.el8                    rhel-baseos     301 k
 npth                          x86_64  1.5-4.el8                      rhel-baseos      26 k
 ocaml-srpm-macros             noarch  5-4.el8                        rhel-appstream  9.5 k
 openblas-srpm-macros          noarch  2-2.el8                        rhel-appstream  8.0 k
 openldap                      x86_64  2.4.46-18.el8                  rhel-baseos     352 k
 openssl-libs                  x86_64  1:1.1.1k-7.el8_6               rhel-baseos     1.5 M
 p11-kit                       x86_64  0.23.22-1.el8                  rhel-baseos     324 k
 p11-kit-trust                 x86_64  0.23.22-1.el8                  rhel-baseos     137 k
 pam                           x86_64  1.3.1-22.el8                   rhel-baseos     743 k
 pcre                          x86_64  8.42-6.el8                     rhel-baseos     211 k
 pcre2                         x86_64  10.32-3.el8_6                  rhel-baseos     247 k
 perl-srpm-macros              noarch  1-25.el8                       rhel-appstream   11 k
 pkgconf                       x86_64  1.4.2-1.el8                    rhel-baseos      38 k
 pkgconf-m4                    noarch  1.4.2-1.el8                    rhel-baseos      17 k
 pkgconf-pkg-config            x86_64  1.4.2-1.el8                    rhel-baseos      15 k
 platform-python               x86_64  3.6.8-48.el8_7                 rhel-baseos      86 k
 platform-python-setuptools    noarch  39.2.0-6.el8                   rhel-baseos     632 k
 popt                          x86_64  1.18-1.el8                     rhel-baseos      61 k
 publicsuffix-list-dafsa       noarch  20180723-1.el8                 rhel-baseos      56 k
 python-rpm-macros             noarch  3-43.el8                       rhel-appstream   16 k
 python-srpm-macros            noarch  3-43.el8                       rhel-appstream   15 k
 python3-libs                  x86_64  3.6.8-48.el8_7                 rhel-baseos     7.8 M
 python3-pip-wheel             noarch  9.0.3-22.el8                   rhel-baseos     895 k
 python3-rpm-macros            noarch  3-43.el8                       rhel-appstream   15 k
 python3-setuptools-wheel      noarch  39.2.0-6.el8                   rhel-baseos     289 k
 qt5-srpm-macros               noarch  5.15.3-1.el8                   rhel-appstream   11 k
 readline                      x86_64  7.0-10.el8                     rhel-baseos     199 k
 rpm                           x86_64  4.14.3-24.el8_7                rhel-baseos     543 k
 rpm-build-libs                x86_64  4.14.3-24.el8_7                rhel-baseos     157 k
 rpm-libs                      x86_64  4.14.3-24.el8_7                rhel-baseos     346 k
 rust-srpm-macros              noarch  5-2.el8                        rhel-appstream  9.3 k
 setup                         noarch  2.12.2-7.el8                   rhel-baseos     181 k
 sqlite-libs                   x86_64  3.26.0-17.el8_7                rhel-baseos     581 k
 systemd-libs                  x86_64  239-68.el8_7.2                 rhel-baseos     1.1 M
 tpm2-tss                      x86_64  2.3.2-4.el8                    rhel-baseos     275 k
 tzdata                        noarch  2022g-1.el8                    rhel-baseos     470 k
 xz-libs                       x86_64  5.2.4-4.el8_6                  rhel-baseos      94 k
 zip                           x86_64  3.0-23.el8                     rhel-baseos     270 k
 zlib                          x86_64  1.2.11-21.el8_7                rhel-baseos     103 k
 zstd                          x86_64  1.4.4-1.el8                    rhel-appstream  393 k

Transaction Summary
===========================================================================================
Install  172 Packages

Total download size: 162 M
Installed size: 813 M
Downloading Packages:
(1/172): libassuan-2.5.1-3.el8.x86_64.rpm       295 kB/s |  83 kB     00:00    
(2/172): cracklib-2.9.6-15.el8.x86_64.rpm       325 kB/s |  93 kB     00:00    
(3/172): libutempter-1.1.6-14.el8.x86_64.rpm     98 kB/s |  32 kB     00:00    
(4/172): pkgconf-1.4.2-1.el8.x86_64.rpm         386 kB/s |  38 kB     00:00    
(5/172): readline-7.0-10.el8.x86_64.rpm         1.3 MB/s | 199 kB     00:00    
(6/172): grep-3.1-6.el8.x86_64.rpm              1.7 MB/s | 274 kB     00:00    
(7/172): npth-1.5-4.el8.x86_64.rpm              295 kB/s |  26 kB     00:00    
(8/172): libsigsegv-2.11-5.el8.x86_64.rpm       277 kB/s |  30 kB     00:00    
(9/172): pkgconf-pkg-config-1.4.2-1.el8.x86_64. 145 kB/s |  15 kB     00:00    
(10/172): cracklib-dicts-2.9.6-15.el8.x86_64.rp  16 MB/s | 4.0 MB     00:00    
(11/172): bzip2-libs-1.0.6-26.el8.x86_64.rpm    452 kB/s |  48 kB     00:00    
(12/172): mpfr-3.1.6-1.el8.x86_64.rpm           2.4 MB/s | 221 kB     00:00    
(13/172): libunistring-0.9.9-3.el8.x86_64.rpm   4.0 MB/s | 422 kB     00:00    
(14/172): zip-3.0-23.el8.x86_64.rpm             1.3 MB/s | 270 kB     00:00    
(15/172): bzip2-1.0.6-26.el8.x86_64.rpm         687 kB/s |  60 kB     00:00    
(16/172): libnsl2-1.2.0-2.20180605git4a062cf.el 608 kB/s |  58 kB     00:00    
(17/172): publicsuffix-list-dafsa-20180723-1.el 571 kB/s |  56 kB     00:00    
(18/172): libattr-2.4.48-3.el8.x86_64.rpm        35 kB/s |  27 kB     00:00    
(19/172): libpkgconf-1.4.2-1.el8.x86_64.rpm      86 kB/s |  35 kB     00:00    
(20/172): pkgconf-m4-1.4.2-1.el8.noarch.rpm      73 kB/s |  17 kB     00:00    
(21/172): libacl-2.2.53-1.el8.x86_64.rpm        403 kB/s |  35 kB     00:00    
(22/172): findutils-4.6.0-20.el8.x86_64.rpm     2.9 MB/s | 528 kB     00:00    
(23/172): basesystem-11-5.el8.noarch.rpm        107 kB/s |  11 kB     00:00    
(24/172): libtool-ltdl-2.4.6-25.el8.x86_64.rpm  646 kB/s |  58 kB     00:00    
(25/172): libgpg-error-1.31-1.el8.x86_64.rpm    2.3 MB/s | 242 kB     00:00    
(26/172): gmp-6.1.2-10.el8.x86_64.rpm           2.6 MB/s | 321 kB     00:00    
(27/172): diffutils-3.6-6.el8.x86_64.rpm        3.7 MB/s | 359 kB     00:00    
(28/172): libidn2-2.2.0-1.el8.x86_64.rpm        1.0 MB/s |  94 kB     00:00    
(29/172): patch-2.7.6-11.el8.x86_64.rpm         1.3 MB/s | 138 kB     00:00    
(30/172): libnghttp2-1.33.0-3.el8_2.1.x86_64.rp 837 kB/s |  77 kB     00:00    
(31/172): libzstd-1.4.4-1.el8.x86_64.rpm        2.4 MB/s | 266 kB     00:00    
(32/172): python3-setuptools-wheel-39.2.0-6.el8 2.5 MB/s | 289 kB     00:00    
(33/172): libusbx-1.0.23-4.el8.x86_64.rpm       738 kB/s |  74 kB     00:00    
(34/172): p11-kit-trust-0.23.22-1.el8.x86_64.rp 1.3 MB/s | 137 kB     00:00    
(35/172): platform-python-setuptools-39.2.0-6.e 4.3 MB/s | 632 kB     00:00    
(36/172): libpsl-0.20.2-6.el8.x86_64.rpm        543 kB/s |  61 kB     00:00    
(37/172): popt-1.18-1.el8.x86_64.rpm            648 kB/s |  61 kB     00:00    
(38/172): lz4-libs-1.8.3-3.el8_4.x86_64.rpm     675 kB/s |  66 kB     00:00    
(39/172): brotli-1.0.6-3.el8.x86_64.rpm         2.2 MB/s | 323 kB     00:00    
(40/172): ima-evm-utils-1.3.2-12.el8.x86_64.rpm 677 kB/s |  64 kB     00:00    
(41/172): libxcrypt-devel-4.1.1-6.el8.x86_64.rp 283 kB/s |  25 kB     00:00    
(42/172): p11-kit-0.23.22-1.el8.x86_64.rpm      2.4 MB/s | 324 kB     00:00    
(43/172): tpm2-tss-2.3.2-4.el8.x86_64.rpm       2.5 MB/s | 275 kB     00:00    
(44/172): pcre-8.42-6.el8.x86_64.rpm            1.9 MB/s | 211 kB     00:00    
(45/172): openldap-2.4.46-18.el8.x86_64.rpm     3.2 MB/s | 352 kB     00:00    
(46/172): nettle-3.4.1-7.el8.x86_64.rpm         2.9 MB/s | 301 kB     00:00    
(47/172): ncurses-libs-6.1-9.20180224.el8.x86_6 3.0 MB/s | 334 kB     00:00    
(48/172): libdb-utils-5.3.28-42.el8_4.x86_64.rp 1.6 MB/s | 150 kB     00:00    
(49/172): chkconfig-1.19.1-1.el8.x86_64.rpm     2.2 MB/s | 198 kB     00:00    
(50/172): filesystem-3.8-6.el8.x86_64.rpm       6.0 MB/s | 1.1 MB     00:00    
(51/172): libxcrypt-4.1.1-6.el8.x86_64.rpm      474 kB/s |  73 kB     00:00    
(52/172): libcap-ng-0.7.11-1.el8.x86_64.rpm     376 kB/s |  33 kB     00:00    
(53/172): libdb-5.3.28-42.el8_4.x86_64.rpm      6.2 MB/s | 751 kB     00:00    
(54/172): libsepol-2.9-3.el8.x86_64.rpm         3.8 MB/s | 340 kB     00:00    
(55/172): ncurses-6.1-9.20180224.el8.x86_64.rpm 2.4 MB/s | 387 kB     00:00    
(56/172): gzip-1.9-13.el8_5.x86_64.rpm          1.6 MB/s | 167 kB     00:00    
(57/172): keyutils-libs-1.5.10-9.el8.x86_64.rpm 285 kB/s |  34 kB     00:00    
(58/172): ncurses-base-6.1-9.20180224.el8.noarc 810 kB/s |  81 kB     00:00    
(59/172): cyrus-sasl-lib-2.1.27-6.el8_5.x86_64. 1.3 MB/s | 123 kB     00:00    
(60/172): cpio-2.12-11.el8.x86_64.rpm           2.5 MB/s | 266 kB     00:00    
(61/172): lua-libs-5.3.4-12.el8.x86_64.rpm      930 kB/s | 118 kB     00:00    
(62/172): sed-4.5-5.el8.x86_64.rpm              3.0 MB/s | 298 kB     00:00    
(63/172): make-4.2.1-11.el8.x86_64.rpm          4.2 MB/s | 498 kB     00:00    
(64/172): libffi-3.1-23.el8.x86_64.rpm          347 kB/s |  37 kB     00:00    
(65/172): python3-pip-wheel-9.0.3-22.el8.noarch 7.3 MB/s | 895 kB     00:00    
(66/172): libssh-0.9.6-3.el8.x86_64.rpm         2.2 MB/s | 216 kB     00:00    
(67/172): gawk-4.2.1-4.el8.x86_64.rpm            11 MB/s | 1.1 MB     00:00    
(68/172): xz-libs-5.2.4-4.el8_6.x86_64.rpm      1.0 MB/s |  94 kB     00:00    
(69/172): xz-5.2.4-4.el8_6.x86_64.rpm           1.4 MB/s | 153 kB     00:00    
(70/172): crypto-policies-20211116-1.gitae470d6 556 kB/s |  64 kB     00:00    
(71/172): info-6.5-7.el8.x86_64.rpm             1.7 MB/s | 198 kB     00:00    
(72/172): libssh-config-0.9.6-3.el8.noarch.rpm  227 kB/s |  19 kB     00:00    
(73/172): unzip-6.0-46.el8.x86_64.rpm           1.6 MB/s | 196 kB     00:00    
(74/172): coreutils-8.30-13.el8.x86_64.rpm      9.6 MB/s | 1.2 MB     00:00    
(75/172): libpwquality-1.4.4-5.el8.x86_64.rpm   1.1 MB/s | 107 kB     00:00    
(76/172): glibc-headers-2.28-211.el8.x86_64.rpm 4.8 MB/s | 486 kB     00:00    
(77/172): tar-1.30-6.el8.x86_64.rpm             6.2 MB/s | 838 kB     00:00    
(78/172): libbabeltrace-1.5.4-4.el8.x86_64.rpm  1.8 MB/s | 200 kB     00:00    
(79/172): libksba-1.3.5-8.el8_6.x86_64.rpm      1.3 MB/s | 134 kB     00:00    
(80/172): libverto-0.3.2-2.el8.x86_64.rpm       224 kB/s |  24 kB     00:00    
(81/172): gdbm-libs-1.18-2.el8.x86_64.rpm       599 kB/s |  60 kB     00:00    
(82/172): gnupg2-2.2.20-3.el8_6.x86_64.rpm       17 MB/s | 2.4 MB     00:00    
(83/172): coreutils-common-8.30-13.el8.x86_64.r  12 MB/s | 2.0 MB     00:00    
(84/172): libtirpc-1.1.4-8.el8.x86_64.rpm       1.1 MB/s | 113 kB     00:00    
(85/172): ca-certificates-2022.2.54-80.2.el8_6. 6.7 MB/s | 921 kB     00:00    
(86/172): pcre2-10.32-3.el8_6.x86_64.rpm        2.0 MB/s | 247 kB     00:00    
(87/172): glibc-all-langpacks-2.28-211.el8.x86_  37 MB/s |  26 MB     00:00    
(88/172): pam-1.3.1-22.el8.x86_64.rpm           7.0 MB/s | 743 kB     00:00    
(89/172): libgcrypt-1.8.5-7.el8_6.x86_64.rpm    4.3 MB/s | 463 kB     00:00    
(90/172): glibc-devel-2.28-211.el8.x86_64.rpm   693 kB/s |  82 kB     00:00    
(91/172): openssl-libs-1.1.1k-7.el8_6.x86_64.rp  11 MB/s | 1.5 MB     00:00    
(92/172): libcom_err-1.45.6-5.el8.x86_64.rpm    470 kB/s |  49 kB     00:00    
(93/172): libsemanage-2.9-9.el8_6.x86_64.rpm    1.6 MB/s | 168 kB     00:00    
(94/172): binutils-2.30-117.el8.x86_64.rpm       17 MB/s | 5.8 MB     00:00    
(95/172): bash-4.4.20-4.el8_6.x86_64.rpm         11 MB/s | 1.5 MB     00:00    
(96/172): gnutls-3.6.16-5.el8_6.x86_64.rpm      9.0 MB/s | 1.0 MB     00:00    
(97/172): glibc-gconv-extra-2.28-211.el8.x86_64  13 MB/s | 1.5 MB     00:00    
(98/172): elfutils-libelf-0.187-4.el8.x86_64.rp 2.4 MB/s | 231 kB     00:00    
(99/172): file-libs-5.33-21.el8.x86_64.rpm      4.7 MB/s | 543 kB     00:00    
(100/172): file-5.33-21.el8.x86_64.rpm          843 kB/s |  77 kB     00:00    
(101/172): which-2.21-18.el8.x86_64.rpm         482 kB/s |  50 kB     00:00    
(102/172): gdbm-1.18-2.el8.x86_64.rpm           1.5 MB/s | 130 kB     00:00    
(103/172): glibc-2.28-211.el8.x86_64.rpm         16 MB/s | 2.2 MB     00:00    
(104/172): elfutils-0.187-4.el8.x86_64.rpm      4.4 MB/s | 543 kB     00:00    
(105/172): glibc-common-2.28-211.el8.x86_64.rpm 7.3 MB/s | 1.0 MB     00:00    
(106/172): setup-2.12.2-7.el8.noarch.rpm        1.7 MB/s | 181 kB     00:00    
(107/172): elfutils-libs-0.187-4.el8.x86_64.rpm 2.3 MB/s | 297 kB     00:00    
(108/172): libarchive-3.3.3-4.el8.x86_64.rpm    3.0 MB/s | 360 kB     00:00    
(109/172): audit-libs-3.0.7-4.el8.x86_64.rpm    1.1 MB/s | 123 kB     00:00    
(110/172): libcap-2.48-4.el8.x86_64.rpm         753 kB/s |  74 kB     00:00    
(111/172): elfutils-default-yama-scope-0.187-4. 473 kB/s |  52 kB     00:00    
(112/172): shadow-utils-4.6-17.el8.x86_64.rpm   9.8 MB/s | 1.2 MB     00:00    
(113/172): libselinux-2.9-6.el8.x86_64.rpm      1.3 MB/s | 165 kB     00:00    
(114/172): glib2-2.56.4-159.el8.x86_64.rpm       12 MB/s | 2.5 MB     00:00    
(115/172): redhat-release-8.7-0.3.el8.x86_64.rp 390 kB/s |  44 kB     00:00    
(116/172): rpm-libs-4.14.3-24.el8_7.x86_64.rpm  3.1 MB/s | 346 kB     00:00    
(117/172): rpm-4.14.3-24.el8_7.x86_64.rpm       3.3 MB/s | 543 kB     00:00    
(118/172): rpm-build-libs-4.14.3-24.el8_7.x86_6 765 kB/s | 157 kB     00:00    
(119/172): platform-python-3.6.8-48.el8_7.x86_6 738 kB/s |  86 kB     00:00    
(120/172): python3-libs-3.6.8-48.el8_7.x86_64.r  25 MB/s | 7.8 MB     00:00    
(121/172): tzdata-2022g-1.el8.noarch.rpm        4.4 MB/s | 470 kB     00:00    
(122/172): krb5-libs-1.18.2-22.el8_7.x86_64.rpm 7.3 MB/s | 840 kB     00:00    
(123/172): curl-7.61.1-25.el8_7.1.x86_64.rpm    3.2 MB/s | 352 kB     00:00    
(124/172): libuuid-2.32.1-39.el8_7.x86_64.rpm   939 kB/s |  98 kB     00:00    
(125/172): libgcc-8.5.0-16.el8_7.x86_64.rpm     748 kB/s |  81 kB     00:00    
(126/172): util-linux-2.32.1-39.el8_7.x86_64.rp  15 MB/s | 2.5 MB     00:00    
(127/172): libtasn1-4.13-4.el8_7.x86_64.rpm     671 kB/s |  76 kB     00:00    
(128/172): expat-2.2.5-10.el8_7.1.x86_64.rpm    940 kB/s | 113 kB     00:00    
(129/172): libstdc++-8.5.0-16.el8_7.x86_64.rpm  3.4 MB/s | 454 kB     00:00    
(130/172): libblkid-2.32.1-39.el8_7.x86_64.rpm  1.3 MB/s | 220 kB     00:00    
(131/172): libcurl-7.61.1-25.el8_7.1.x86_64.rpm 2.3 MB/s | 302 kB     00:00    
(132/172): libmount-2.32.1-39.el8_7.x86_64.rpm  1.6 MB/s | 236 kB     00:00    
(133/172): kernel-headers-4.18.0-425.10.1.el8_7  31 MB/s |  10 MB     00:00    
(134/172): systemd-libs-239-68.el8_7.2.x86_64.r  10 MB/s | 1.1 MB     00:00    
(135/172): zlib-1.2.11-21.el8_7.x86_64.rpm      1.0 MB/s | 103 kB     00:00    
(136/172): sqlite-libs-3.26.0-17.el8_7.x86_64.r 4.9 MB/s | 581 kB     00:00    
(137/172): libgomp-8.5.0-16.el8_7.x86_64.rpm    1.2 MB/s | 207 kB     00:00    
(138/172): libfdisk-2.32.1-39.el8_7.x86_64.rpm  2.4 MB/s | 253 kB     00:00    
(139/172): libsmartcols-2.32.1-39.el8_7.x86_64. 1.7 MB/s | 179 kB     00:00    
(140/172): libxml2-2.9.7-15.el8_7.1.x86_64.rpm  6.6 MB/s | 697 kB     00:00    
(141/172): rust-srpm-macros-5-2.el8.noarch.rpm   91 kB/s | 9.3 kB     00:00    
(142/172): ocaml-srpm-macros-5-4.el8.noarch.rpm 114 kB/s | 9.5 kB     00:00    
(143/172): ghc-srpm-macros-1.4.2-7.el8.noarch.r  96 kB/s | 9.4 kB     00:00    
(144/172): openblas-srpm-macros-2-2.el8.noarch.  77 kB/s | 8.0 kB     00:00    
(145/172): perl-srpm-macros-1-25.el8.noarch.rpm 113 kB/s |  11 kB     00:00    
(146/172): libatomic_ops-7.6.2-3.el8.x86_64.rpm 376 kB/s |  38 kB     00:00    
(147/172): gc-7.6.4-3.el8.x86_64.rpm            1.1 MB/s | 109 kB     00:00    
(148/172): libipt-1.6.1-8.el8.x86_64.rpm        462 kB/s |  50 kB     00:00    
(149/172): isl-0.16.1-6.el8.x86_64.rpm          6.6 MB/s | 841 kB     00:00    
(150/172): guile-2.0.14-7.el8.x86_64.rpm         21 MB/s | 3.5 MB     00:00    
(151/172): libmpc-1.1.0-9.1.el8.x86_64.rpm      700 kB/s |  61 kB     00:00    
(152/172): zstd-1.4.4-1.el8.x86_64.rpm          3.8 MB/s | 393 kB     00:00    
(153/172): efi-srpm-macros-3-3.el8.noarch.rpm   222 kB/s |  22 kB     00:00    
(154/172): go-srpm-macros-2-17.el8.noarch.rpm   131 kB/s |  13 kB     00:00    
(155/172): dwz-0.12-10.el8.x86_64.rpm           1.0 MB/s | 109 kB     00:00    
(156/172): qt5-srpm-macros-5.15.3-1.el8.noarch. 107 kB/s |  11 kB     00:00    
(157/172): python3-rpm-macros-3-43.el8.noarch.r 160 kB/s |  15 kB     00:00    
(158/172): redhat-rpm-config-130-1.el8.noarch.r 556 kB/s |  90 kB     00:00    
(159/172): python-rpm-macros-3-43.el8.noarch.rp 139 kB/s |  16 kB     00:00    
(160/172): gdb-headless-8.2-19.el8.x86_64.rpm    17 MB/s | 3.7 MB     00:00    
(161/172): python-srpm-macros-3-43.el8.noarch.r 143 kB/s |  15 kB     00:00    
(162/172): annobin-10.67-3.el8.x86_64.rpm       8.9 MB/s | 955 kB     00:00    
(163/172): rpm-build-4.14.3-24.el8_7.x86_64.rpm 1.7 MB/s | 174 kB     00:00    
(164/172): libstdc++-devel-8.5.0-16.el8_7.x86_6 8.4 MB/s | 2.1 MB     00:00    
(165/172): cpp-8.5.0-16.el8_7.x86_64.rpm         28 MB/s |  10 MB     00:00    
(166/172): gcc-plugin-annobin-8.5.0-16.el8_7.x8 321 kB/s |  35 kB     00:00    
(167/172): ansible-srpm-macros-1-8.1.el8.noarch  47 kB/s | 8.5 kB     00:00    
(168/172): gcc-8.5.0-16.el8_7.x86_64.rpm         33 MB/s |  23 MB     00:00    
(169/172): epel-rpm-macros-8-35.noarch.rpm      151 kB/s |  24 kB     00:00    
(170/172): gcc-c++-8.5.0-16.el8_7.x86_64.rpm     32 MB/s |  12 MB     00:00    
(171/172): fpc-srpm-macros-1.3-1.el8.noarch.rpm 121 kB/s | 8.2 kB     00:00    
(172/172): lua-srpm-macros-1-3.el8.noarch.rpm    59 kB/s | 8.1 kB     00:00    
--------------------------------------------------------------------------------
Total                                            20 MB/s | 162 MB     00:08     
Red Hat Enterprise Linux - BaseOS               3.1 MB/s | 3.1 kB     00:00    
Importing GPG key 0xFD431D51:
 Userid     : "Red Hat, Inc. (release key 2) <security@redhat.com>"
 Fingerprint: 567E 347A D004 4ADE 55BA 8A5F 199E 2F91 FD43 1D51
 From       : /usr/share/distribution-gpg-keys/redhat/RPM-GPG-KEY-redhat8-release
Key imported successfully
Importing GPG key 0x2FA658E0:
 Userid     : "Red Hat, Inc. (auxiliary key) <security@redhat.com>"
 Fingerprint: 43A6 E49C 4A38 F4BE 9ABF 2A53 4568 9C88 2FA6 58E0
 From       : /usr/share/distribution-gpg-keys/redhat/RPM-GPG-KEY-redhat8-release
Key imported successfully
Extra Packages for Enterprise Linux 8 - x86_64  1.6 MB/s | 1.6 kB     00:00    
Importing GPG key 0x2F86D6A1:
 Userid     : "Fedora EPEL (8) <epel@fedoraproject.org>"
 Fingerprint: 94E2 79EB 8D8F 25B2 1810 ADF1 21EA 45AB 2F86 D6A1
 From       : /usr/share/distribution-gpg-keys/epel/RPM-GPG-KEY-EPEL-8
Key imported successfully
Running transaction check
Transaction check succeeded.
Running transaction test
Transaction test succeeded.
Running transaction
  Running scriptlet: filesystem-3.8-6.el8.x86_64                            1/1 
  Preparing        :                                                        1/1 
  Installing       : libgcc-8.5.0-16.el8_7.x86_64                         1/172 
  Running scriptlet: libgcc-8.5.0-16.el8_7.x86_64                         1/172 
  Installing       : python-srpm-macros-3-43.el8.noarch                   2/172 
  Installing       : crypto-policies-20211116-1.gitae470d6.el8.noarch     3/172 
  Running scriptlet: crypto-policies-20211116-1.gitae470d6.el8.noarch     3/172 
  Installing       : python-rpm-macros-3-43.el8.noarch                    4/172 
  Installing       : redhat-release-8.7-0.3.el8.x86_64                    5/172 
  Installing       : setup-2.12.2-7.el8.noarch                            6/172 
warning: /etc/hosts created as /etc/hosts.rpmnew

  Running scriptlet: setup-2.12.2-7.el8.noarch                            6/172 
  Installing       : filesystem-3.8-6.el8.x86_64                          7/172 
  Installing       : python3-pip-wheel-9.0.3-22.el8.noarch                8/172 
  Installing       : python3-setuptools-wheel-39.2.0-6.el8.noarch         9/172 
  Installing       : basesystem-11-5.el8.noarch                          10/172 
  Installing       : python3-rpm-macros-3-43.el8.noarch                  11/172 
  Installing       : fpc-srpm-macros-1.3-1.el8.noarch                    12/172 
  Installing       : ansible-srpm-macros-1-8.1.el8.noarch                13/172 
  Installing       : qt5-srpm-macros-5.15.3-1.el8.noarch                 14/172 
  Installing       : go-srpm-macros-2-17.el8.noarch                      15/172 
  Installing       : perl-srpm-macros-1-25.el8.noarch                    16/172 
  Installing       : openblas-srpm-macros-2-2.el8.noarch                 17/172 
  Installing       : ghc-srpm-macros-1.4.2-7.el8.noarch                  18/172 
  Installing       : ocaml-srpm-macros-5-4.el8.noarch                    19/172 
  Installing       : rust-srpm-macros-5-2.el8.noarch                     20/172 
  Installing       : kernel-headers-4.18.0-425.10.1.el8_7.x86_64         21/172 
  Installing       : tzdata-2022g-1.el8.noarch                           22/172 
  Installing       : libssh-config-0.9.6-3.el8.noarch                    23/172 
  Installing       : ncurses-base-6.1-9.20180224.el8.noarch              24/172 
  Installing       : pcre2-10.32-3.el8_6.x86_64                          25/172 
  Installing       : libselinux-2.9-6.el8.x86_64                         26/172 
  Installing       : ncurses-libs-6.1-9.20180224.el8.x86_64              27/172 
  Installing       : glibc-all-langpacks-2.28-211.el8.x86_64             28/172 
  Installing       : glibc-gconv-extra-2.28-211.el8.x86_64               29/172 
  Running scriptlet: glibc-gconv-extra-2.28-211.el8.x86_64               29/172 
  Installing       : glibc-common-2.28-211.el8.x86_64                    30/172 
  Running scriptlet: glibc-2.28-211.el8.x86_64                           31/172 
  Installing       : glibc-2.28-211.el8.x86_64                           31/172 
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  Installing       : file-libs-5.33-21.el8.x86_64                        61/172 
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  Installing       : expat-2.2.5-10.el8_7.1.x86_64                       76/172 
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  Installing       : zip-3.0-23.el8.x86_64                               83/172 
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  Installing       : ncurses-6.1-9.20180224.el8.x86_64                  108/172 
  Installing       : openssl-libs-1:1.1.1k-7.el8_6.x86_64               109/172 
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  Installing       : binutils-2.30-117.el8.x86_64                       119/172 
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  Installing       : ima-evm-utils-1.3.2-12.el8.x86_64                  123/172 
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  Installing       : krb5-libs-1.18.2-22.el8_7.x86_64                   132/172 
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  Verifying        : sed-4.5-5.el8.x86_64                                62/172 
  Verifying        : make-1:4.2.1-11.el8.x86_64                          63/172 
  Verifying        : libffi-3.1-23.el8.x86_64                            64/172 
  Verifying        : python3-pip-wheel-9.0.3-22.el8.noarch               65/172 
  Verifying        : libssh-0.9.6-3.el8.x86_64                           66/172 
  Verifying        : gawk-4.2.1-4.el8.x86_64                             67/172 
  Verifying        : xz-libs-5.2.4-4.el8_6.x86_64                        68/172 
  Verifying        : xz-5.2.4-4.el8_6.x86_64                             69/172 
  Verifying        : crypto-policies-20211116-1.gitae470d6.el8.noarch    70/172 
  Verifying        : info-6.5-7.el8.x86_64                               71/172 
  Verifying        : libssh-config-0.9.6-3.el8.noarch                    72/172 
  Verifying        : unzip-6.0-46.el8.x86_64                             73/172 
  Verifying        : coreutils-8.30-13.el8.x86_64                        74/172 
  Verifying        : libpwquality-1.4.4-5.el8.x86_64                     75/172 
  Verifying        : glibc-headers-2.28-211.el8.x86_64                   76/172 
  Verifying        : tar-2:1.30-6.el8.x86_64                             77/172 
  Verifying        : glibc-all-langpacks-2.28-211.el8.x86_64             78/172 
  Verifying        : libbabeltrace-1.5.4-4.el8.x86_64                    79/172 
  Verifying        : libksba-1.3.5-8.el8_6.x86_64                        80/172 
  Verifying        : libverto-0.3.2-2.el8.x86_64                         81/172 
  Verifying        : gdbm-libs-1:1.18-2.el8.x86_64                       82/172 
  Verifying        : gnupg2-2.2.20-3.el8_6.x86_64                        83/172 
  Verifying        : coreutils-common-8.30-13.el8.x86_64                 84/172 
  Verifying        : libtirpc-1.1.4-8.el8.x86_64                         85/172 
  Verifying        : ca-certificates-2022.2.54-80.2.el8_6.noarch         86/172 
  Verifying        : pcre2-10.32-3.el8_6.x86_64                          87/172 
  Verifying        : pam-1.3.1-22.el8.x86_64                             88/172 
  Verifying        : libgcrypt-1.8.5-7.el8_6.x86_64                      89/172 
  Verifying        : binutils-2.30-117.el8.x86_64                        90/172 
  Verifying        : glibc-devel-2.28-211.el8.x86_64                     91/172 
  Verifying        : openssl-libs-1:1.1.1k-7.el8_6.x86_64                92/172 
  Verifying        : libcom_err-1.45.6-5.el8.x86_64                      93/172 
  Verifying        : libsemanage-2.9-9.el8_6.x86_64                      94/172 
  Verifying        : bash-4.4.20-4.el8_6.x86_64                          95/172 
  Verifying        : gnutls-3.6.16-5.el8_6.x86_64                        96/172 
  Verifying        : glibc-gconv-extra-2.28-211.el8.x86_64               97/172 
  Verifying        : elfutils-libelf-0.187-4.el8.x86_64                  98/172 
  Verifying        : file-libs-5.33-21.el8.x86_64                        99/172 
  Verifying        : file-5.33-21.el8.x86_64                            100/172 
  Verifying        : which-2.21-18.el8.x86_64                           101/172 
  Verifying        : gdbm-1:1.18-2.el8.x86_64                           102/172 
  Verifying        : glibc-2.28-211.el8.x86_64                          103/172 
  Verifying        : elfutils-0.187-4.el8.x86_64                        104/172 
  Verifying        : glibc-common-2.28-211.el8.x86_64                   105/172 
  Verifying        : setup-2.12.2-7.el8.noarch                          106/172 
  Verifying        : elfutils-libs-0.187-4.el8.x86_64                   107/172 
  Verifying        : libarchive-3.3.3-4.el8.x86_64                      108/172 
  Verifying        : audit-libs-3.0.7-4.el8.x86_64                      109/172 
  Verifying        : libcap-2.48-4.el8.x86_64                           110/172 
  Verifying        : elfutils-default-yama-scope-0.187-4.el8.noarch     111/172 
  Verifying        : shadow-utils-2:4.6-17.el8.x86_64                   112/172 
  Verifying        : glib2-2.56.4-159.el8.x86_64                        113/172 
  Verifying        : libselinux-2.9-6.el8.x86_64                        114/172 
  Verifying        : redhat-release-8.7-0.3.el8.x86_64                  115/172 
  Verifying        : rpm-libs-4.14.3-24.el8_7.x86_64                    116/172 
  Verifying        : rpm-4.14.3-24.el8_7.x86_64                         117/172 
  Verifying        : python3-libs-3.6.8-48.el8_7.x86_64                 118/172 
  Verifying        : rpm-build-libs-4.14.3-24.el8_7.x86_64              119/172 
  Verifying        : platform-python-3.6.8-48.el8_7.x86_64              120/172 
  Verifying        : krb5-libs-1.18.2-22.el8_7.x86_64                   121/172 
  Verifying        : tzdata-2022g-1.el8.noarch                          122/172 
  Verifying        : curl-7.61.1-25.el8_7.1.x86_64                      123/172 
  Verifying        : libuuid-2.32.1-39.el8_7.x86_64                     124/172 
  Verifying        : libgcc-8.5.0-16.el8_7.x86_64                       125/172 
  Verifying        : util-linux-2.32.1-39.el8_7.x86_64                  126/172 
  Verifying        : expat-2.2.5-10.el8_7.1.x86_64                      127/172 
  Verifying        : libtasn1-4.13-4.el8_7.x86_64                       128/172 
  Verifying        : libblkid-2.32.1-39.el8_7.x86_64                    129/172 
  Verifying        : kernel-headers-4.18.0-425.10.1.el8_7.x86_64        130/172 
  Verifying        : libstdc++-8.5.0-16.el8_7.x86_64                    131/172 
  Verifying        : libcurl-7.61.1-25.el8_7.1.x86_64                   132/172 
  Verifying        : libmount-2.32.1-39.el8_7.x86_64                    133/172 
  Verifying        : systemd-libs-239-68.el8_7.2.x86_64                 134/172 
  Verifying        : zlib-1.2.11-21.el8_7.x86_64                        135/172 
  Verifying        : libgomp-8.5.0-16.el8_7.x86_64                      136/172 
  Verifying        : sqlite-libs-3.26.0-17.el8_7.x86_64                 137/172 
  Verifying        : libfdisk-2.32.1-39.el8_7.x86_64                    138/172 
  Verifying        : libsmartcols-2.32.1-39.el8_7.x86_64                139/172 
  Verifying        : libxml2-2.9.7-15.el8_7.1.x86_64                    140/172 
  Verifying        : rust-srpm-macros-5-2.el8.noarch                    141/172 
  Verifying        : ocaml-srpm-macros-5-4.el8.noarch                   142/172 
  Verifying        : ghc-srpm-macros-1.4.2-7.el8.noarch                 143/172 
  Verifying        : openblas-srpm-macros-2-2.el8.noarch                144/172 
  Verifying        : perl-srpm-macros-1-25.el8.noarch                   145/172 
  Verifying        : libatomic_ops-7.6.2-3.el8.x86_64                   146/172 
  Verifying        : gc-7.6.4-3.el8.x86_64                              147/172 
  Verifying        : guile-5:2.0.14-7.el8.x86_64                        148/172 
  Verifying        : isl-0.16.1-6.el8.x86_64                            149/172 
  Verifying        : libipt-1.6.1-8.el8.x86_64                          150/172 
  Verifying        : zstd-1.4.4-1.el8.x86_64                            151/172 
  Verifying        : libmpc-1.1.0-9.1.el8.x86_64                        152/172 
  Verifying        : efi-srpm-macros-3-3.el8.noarch                     153/172 
  Verifying        : go-srpm-macros-2-17.el8.noarch                     154/172 
  Verifying        : dwz-0.12-10.el8.x86_64                             155/172 
  Verifying        : qt5-srpm-macros-5.15.3-1.el8.noarch                156/172 
  Verifying        : python3-rpm-macros-3-43.el8.noarch                 157/172 
  Verifying        : redhat-rpm-config-130-1.el8.noarch                 158/172 
  Verifying        : gdb-headless-8.2-19.el8.x86_64                     159/172 
  Verifying        : python-rpm-macros-3-43.el8.noarch                  160/172 
  Verifying        : python-srpm-macros-3-43.el8.noarch                 161/172 
  Verifying        : annobin-10.67-3.el8.x86_64                         162/172 
  Verifying        : rpm-build-4.14.3-24.el8_7.x86_64                   163/172 
  Verifying        : cpp-8.5.0-16.el8_7.x86_64                          164/172 
  Verifying        : gcc-8.5.0-16.el8_7.x86_64                          165/172 
  Verifying        : libstdc++-devel-8.5.0-16.el8_7.x86_64              166/172 
  Verifying        : gcc-plugin-annobin-8.5.0-16.el8_7.x86_64           167/172 
  Verifying        : gcc-c++-8.5.0-16.el8_7.x86_64                      168/172 
  Verifying        : ansible-srpm-macros-1-8.1.el8.noarch               169/172 
  Verifying        : epel-rpm-macros-8-35.noarch                        170/172 
  Verifying        : fpc-srpm-macros-1.3-1.el8.noarch                   171/172 
  Verifying        : lua-srpm-macros-1-3.el8.noarch                     172/172 
Installed products updated.

Installed:
  annobin-10.67-3.el8.x86_64                                                    
  ansible-srpm-macros-1-8.1.el8.noarch                                          
  audit-libs-3.0.7-4.el8.x86_64                                                 
  basesystem-11-5.el8.noarch                                                    
  bash-4.4.20-4.el8_6.x86_64                                                    
  binutils-2.30-117.el8.x86_64                                                  
  brotli-1.0.6-3.el8.x86_64                                                     
  bzip2-1.0.6-26.el8.x86_64                                                     
  bzip2-libs-1.0.6-26.el8.x86_64                                                
  ca-certificates-2022.2.54-80.2.el8_6.noarch                                   
  chkconfig-1.19.1-1.el8.x86_64                                                 
  coreutils-8.30-13.el8.x86_64                                                  
  coreutils-common-8.30-13.el8.x86_64                                           
  cpio-2.12-11.el8.x86_64                                                       
  cpp-8.5.0-16.el8_7.x86_64                                                     
  cracklib-2.9.6-15.el8.x86_64                                                  
  cracklib-dicts-2.9.6-15.el8.x86_64                                            
  crypto-policies-20211116-1.gitae470d6.el8.noarch                              
  curl-7.61.1-25.el8_7.1.x86_64                                                 
  cyrus-sasl-lib-2.1.27-6.el8_5.x86_64                                          
  diffutils-3.6-6.el8.x86_64                                                    
  dwz-0.12-10.el8.x86_64                                                        
  efi-srpm-macros-3-3.el8.noarch                                                
  elfutils-0.187-4.el8.x86_64                                                   
  elfutils-default-yama-scope-0.187-4.el8.noarch                                
  elfutils-libelf-0.187-4.el8.x86_64                                            
  elfutils-libs-0.187-4.el8.x86_64                                              
  epel-rpm-macros-8-35.noarch                                                   
  expat-2.2.5-10.el8_7.1.x86_64                                                 
  file-5.33-21.el8.x86_64                                                       
  file-libs-5.33-21.el8.x86_64                                                  
  filesystem-3.8-6.el8.x86_64                                                   
  findutils-1:4.6.0-20.el8.x86_64                                               
  fpc-srpm-macros-1.3-1.el8.noarch                                              
  gawk-4.2.1-4.el8.x86_64                                                       
  gc-7.6.4-3.el8.x86_64                                                         
  gcc-8.5.0-16.el8_7.x86_64                                                     
  gcc-c++-8.5.0-16.el8_7.x86_64                                                 
  gcc-plugin-annobin-8.5.0-16.el8_7.x86_64                                      
  gdb-headless-8.2-19.el8.x86_64                                                
  gdbm-1:1.18-2.el8.x86_64                                                      
  gdbm-libs-1:1.18-2.el8.x86_64                                                 
  ghc-srpm-macros-1.4.2-7.el8.noarch                                            
  glib2-2.56.4-159.el8.x86_64                                                   
  glibc-2.28-211.el8.x86_64                                                     
  glibc-all-langpacks-2.28-211.el8.x86_64                                       
  glibc-common-2.28-211.el8.x86_64                                              
  glibc-devel-2.28-211.el8.x86_64                                               
  glibc-gconv-extra-2.28-211.el8.x86_64                                         
  glibc-headers-2.28-211.el8.x86_64                                             
  gmp-1:6.1.2-10.el8.x86_64                                                     
  gnupg2-2.2.20-3.el8_6.x86_64                                                  
  gnutls-3.6.16-5.el8_6.x86_64                                                  
  go-srpm-macros-2-17.el8.noarch                                                
  grep-3.1-6.el8.x86_64                                                         
  guile-5:2.0.14-7.el8.x86_64                                                   
  gzip-1.9-13.el8_5.x86_64                                                      
  ima-evm-utils-1.3.2-12.el8.x86_64                                             
  info-6.5-7.el8.x86_64                                                         
  isl-0.16.1-6.el8.x86_64                                                       
  kernel-headers-4.18.0-425.10.1.el8_7.x86_64                                   
  keyutils-libs-1.5.10-9.el8.x86_64                                             
  krb5-libs-1.18.2-22.el8_7.x86_64                                              
  libacl-2.2.53-1.el8.x86_64                                                    
  libarchive-3.3.3-4.el8.x86_64                                                 
  libassuan-2.5.1-3.el8.x86_64                                                  
  libatomic_ops-7.6.2-3.el8.x86_64                                              
  libattr-2.4.48-3.el8.x86_64                                                   
  libbabeltrace-1.5.4-4.el8.x86_64                                              
  libblkid-2.32.1-39.el8_7.x86_64                                               
  libcap-2.48-4.el8.x86_64                                                      
  libcap-ng-0.7.11-1.el8.x86_64                                                 
  libcom_err-1.45.6-5.el8.x86_64                                                
  libcurl-7.61.1-25.el8_7.1.x86_64                                              
  libdb-5.3.28-42.el8_4.x86_64                                                  
  libdb-utils-5.3.28-42.el8_4.x86_64                                            
  libfdisk-2.32.1-39.el8_7.x86_64                                               
  libffi-3.1-23.el8.x86_64                                                      
  libgcc-8.5.0-16.el8_7.x86_64                                                  
  libgcrypt-1.8.5-7.el8_6.x86_64                                                
  libgomp-8.5.0-16.el8_7.x86_64                                                 
  libgpg-error-1.31-1.el8.x86_64                                                
  libidn2-2.2.0-1.el8.x86_64                                                    
  libipt-1.6.1-8.el8.x86_64                                                     
  libksba-1.3.5-8.el8_6.x86_64                                                  
  libmount-2.32.1-39.el8_7.x86_64                                               
  libmpc-1.1.0-9.1.el8.x86_64                                                   
  libnghttp2-1.33.0-3.el8_2.1.x86_64                                            
  libnsl2-1.2.0-2.20180605git4a062cf.el8.x86_64                                 
  libpkgconf-1.4.2-1.el8.x86_64                                                 
  libpsl-0.20.2-6.el8.x86_64                                                    
  libpwquality-1.4.4-5.el8.x86_64                                               
  libselinux-2.9-6.el8.x86_64                                                   
  libsemanage-2.9-9.el8_6.x86_64                                                
  libsepol-2.9-3.el8.x86_64                                                     
  libsigsegv-2.11-5.el8.x86_64                                                  
  libsmartcols-2.32.1-39.el8_7.x86_64                                           
  libssh-0.9.6-3.el8.x86_64                                                     
  libssh-config-0.9.6-3.el8.noarch                                              
  libstdc++-8.5.0-16.el8_7.x86_64                                               
  libstdc++-devel-8.5.0-16.el8_7.x86_64                                         
  libtasn1-4.13-4.el8_7.x86_64                                                  
  libtirpc-1.1.4-8.el8.x86_64                                                   
  libtool-ltdl-2.4.6-25.el8.x86_64                                              
  libunistring-0.9.9-3.el8.x86_64                                               
  libusbx-1.0.23-4.el8.x86_64                                                   
  libutempter-1.1.6-14.el8.x86_64                                               
  libuuid-2.32.1-39.el8_7.x86_64                                                
  libverto-0.3.2-2.el8.x86_64                                                   
  libxcrypt-4.1.1-6.el8.x86_64                                                  
  libxcrypt-devel-4.1.1-6.el8.x86_64                                            
  libxml2-2.9.7-15.el8_7.1.x86_64                                               
  libzstd-1.4.4-1.el8.x86_64                                                    
  lua-libs-5.3.4-12.el8.x86_64                                                  
  lua-srpm-macros-1-3.el8.noarch                                                
  lz4-libs-1.8.3-3.el8_4.x86_64                                                 
  make-1:4.2.1-11.el8.x86_64                                                    
  mpfr-3.1.6-1.el8.x86_64                                                       
  ncurses-6.1-9.20180224.el8.x86_64                                             
  ncurses-base-6.1-9.20180224.el8.noarch                                        
  ncurses-libs-6.1-9.20180224.el8.x86_64                                        
  nettle-3.4.1-7.el8.x86_64                                                     
  npth-1.5-4.el8.x86_64                                                         
  ocaml-srpm-macros-5-4.el8.noarch                                              
  openblas-srpm-macros-2-2.el8.noarch                                           
  openldap-2.4.46-18.el8.x86_64                                                 
  openssl-libs-1:1.1.1k-7.el8_6.x86_64                                          
  p11-kit-0.23.22-1.el8.x86_64                                                  
  p11-kit-trust-0.23.22-1.el8.x86_64                                            
  pam-1.3.1-22.el8.x86_64                                                       
  patch-2.7.6-11.el8.x86_64                                                     
  pcre-8.42-6.el8.x86_64                                                        
  pcre2-10.32-3.el8_6.x86_64                                                    
  perl-srpm-macros-1-25.el8.noarch                                              
  pkgconf-1.4.2-1.el8.x86_64                                                    
  pkgconf-m4-1.4.2-1.el8.noarch                                                 
  pkgconf-pkg-config-1.4.2-1.el8.x86_64                                         
  platform-python-3.6.8-48.el8_7.x86_64                                         
  platform-python-setuptools-39.2.0-6.el8.noarch                                
  popt-1.18-1.el8.x86_64                                                        
  publicsuffix-list-dafsa-20180723-1.el8.noarch                                 
  python-rpm-macros-3-43.el8.noarch                                             
  python-srpm-macros-3-43.el8.noarch                                            
  python3-libs-3.6.8-48.el8_7.x86_64                                            
  python3-pip-wheel-9.0.3-22.el8.noarch                                         
  python3-rpm-macros-3-43.el8.noarch                                            
  python3-setuptools-wheel-39.2.0-6.el8.noarch                                  
  qt5-srpm-macros-5.15.3-1.el8.noarch                                           
  readline-7.0-10.el8.x86_64                                                    
  redhat-release-8.7-0.3.el8.x86_64                                             
  redhat-rpm-config-130-1.el8.noarch                                            
  rpm-4.14.3-24.el8_7.x86_64                                                    
  rpm-build-4.14.3-24.el8_7.x86_64                                              
  rpm-build-libs-4.14.3-24.el8_7.x86_64                                         
  rpm-libs-4.14.3-24.el8_7.x86_64                                               
  rust-srpm-macros-5-2.el8.noarch                                               
  sed-4.5-5.el8.x86_64                                                          
  setup-2.12.2-7.el8.noarch                                                     
  shadow-utils-2:4.6-17.el8.x86_64                                              
  sqlite-libs-3.26.0-17.el8_7.x86_64                                            
  systemd-libs-239-68.el8_7.2.x86_64                                            
  tar-2:1.30-6.el8.x86_64                                                       
  tpm2-tss-2.3.2-4.el8.x86_64                                                   
  tzdata-2022g-1.el8.noarch                                                     
  unzip-6.0-46.el8.x86_64                                                       
  util-linux-2.32.1-39.el8_7.x86_64                                             
  which-2.21-18.el8.x86_64                                                      
  xz-5.2.4-4.el8_6.x86_64                                                       
  xz-libs-5.2.4-4.el8_6.x86_64                                                  
  zip-3.0-23.el8.x86_64                                                         
  zlib-1.2.11-21.el8_7.x86_64                                                   
  zstd-1.4.4-1.el8.x86_64                                                       

Complete!
Finish: dnf install
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: tar-1.30-6.el8.x86_64
ncurses-6.1-9.20180224.el8.x86_64
cracklib-dicts-2.9.6-15.el8.x86_64
zip-3.0-23.el8.x86_64
guile-2.0.14-7.el8.x86_64
libidn2-2.2.0-1.el8.x86_64
util-linux-2.32.1-39.el8_7.x86_64
glib2-2.56.4-159.el8.x86_64
lz4-libs-1.8.3-3.el8_4.x86_64
gc-7.6.4-3.el8.x86_64
glibc-2.28-211.el8.x86_64
file-libs-5.33-21.el8.x86_64
file-5.33-21.el8.x86_64
python3-libs-3.6.8-48.el8_7.x86_64
libselinux-2.9-6.el8.x86_64
libtasn1-4.13-4.el8_7.x86_64
libcom_err-1.45.6-5.el8.x86_64
gdb-headless-8.2-19.el8.x86_64
libfdisk-2.32.1-39.el8_7.x86_64
libssh-0.9.6-3.el8.x86_64
go-srpm-macros-2-17.el8.noarch
libcap-ng-0.7.11-1.el8.x86_64
gpg-pubkey-2f86d6a1-5cf7cefb
info-6.5-7.el8.x86_64
python3-rpm-macros-3-43.el8.noarch
npth-1.5-4.el8.x86_64
coreutils-8.30-13.el8.x86_64
openblas-srpm-macros-2-2.el8.noarch
grep-3.1-6.el8.x86_64
libnghttp2-1.33.0-3.el8_2.1.x86_64
elfutils-libs-0.187-4.el8.x86_64
rpm-libs-4.14.3-24.el8_7.x86_64
ncurses-libs-6.1-9.20180224.el8.x86_64
openssl-libs-1.1.1k-7.el8_6.x86_64
elfutils-libelf-0.187-4.el8.x86_64
efi-srpm-macros-3-3.el8.noarch
libxcrypt-4.1.1-6.el8.x86_64
sqlite-libs-3.26.0-17.el8_7.x86_64
pkgconf-pkg-config-1.4.2-1.el8.x86_64
libtirpc-1.1.4-8.el8.x86_64
cyrus-sasl-lib-2.1.27-6.el8_5.x86_64
platform-python-setuptools-39.2.0-6.el8.noarch
redhat-rpm-config-130-1.el8.noarch
p11-kit-trust-0.23.22-1.el8.x86_64
mpfr-3.1.6-1.el8.x86_64
libsigsegv-2.11-5.el8.x86_64
libutempter-1.1.6-14.el8.x86_64
libblkid-2.32.1-39.el8_7.x86_64
diffutils-3.6-6.el8.x86_64
libsepol-2.9-3.el8.x86_64
gcc-c++-8.5.0-16.el8_7.x86_64
libmpc-1.1.0-9.1.el8.x86_64
epel-rpm-macros-8-35.noarch
brotli-1.0.6-3.el8.x86_64
ocaml-srpm-macros-5-4.el8.noarch
readline-7.0-10.el8.x86_64
glibc-common-2.28-211.el8.x86_64
libatomic_ops-7.6.2-3.el8.x86_64
bash-4.4.20-4.el8_6.x86_64
gmp-6.1.2-10.el8.x86_64
gawk-4.2.1-4.el8.x86_64
basesystem-11-5.el8.noarch
ghc-srpm-macros-1.4.2-7.el8.noarch
ncurses-base-6.1-9.20180224.el8.noarch
python3-setuptools-wheel-39.2.0-6.el8.noarch
libpkgconf-1.4.2-1.el8.x86_64
glibc-all-langpacks-2.28-211.el8.x86_64
shadow-utils-4.6-17.el8.x86_64
xz-5.2.4-4.el8_6.x86_64
curl-7.61.1-25.el8_7.1.x86_64
lua-libs-5.3.4-12.el8.x86_64
make-4.2.1-11.el8.x86_64
libffi-3.1-23.el8.x86_64
libstdc++-devel-8.5.0-16.el8_7.x86_64
zlib-1.2.11-21.el8_7.x86_64
ima-evm-utils-1.3.2-12.el8.x86_64
tzdata-2022g-1.el8.noarch
cpp-8.5.0-16.el8_7.x86_64
gnutls-3.6.16-5.el8_6.x86_64
bzip2-1.0.6-26.el8.x86_64
libpwquality-1.4.4-5.el8.x86_64
isl-0.16.1-6.el8.x86_64
libxml2-2.9.7-15.el8_7.1.x86_64
gcc-8.5.0-16.el8_7.x86_64
setup-2.12.2-7.el8.noarch
zstd-1.4.4-1.el8.x86_64
libtool-ltdl-2.4.6-25.el8.x86_64
libarchive-3.3.3-4.el8.x86_64
expat-2.2.5-10.el8_7.1.x86_64
python-srpm-macros-3-43.el8.noarch
cracklib-2.9.6-15.el8.x86_64
gpg-pubkey-fd431d51-4ae0493b
xz-libs-5.2.4-4.el8_6.x86_64
libcap-2.48-4.el8.x86_64
perl-srpm-macros-1-25.el8.noarch
glibc-headers-2.28-211.el8.x86_64
libgpg-error-1.31-1.el8.x86_64
libmount-2.32.1-39.el8_7.x86_64
pcre2-10.32-3.el8_6.x86_64
glibc-gconv-extra-2.28-211.el8.x86_64
tpm2-tss-2.3.2-4.el8.x86_64
patch-2.7.6-11.el8.x86_64
rpm-build-4.14.3-24.el8_7.x86_64
openldap-2.4.46-18.el8.x86_64
filesystem-3.8-6.el8.x86_64
rpm-build-libs-4.14.3-24.el8_7.x86_64
libcurl-7.61.1-25.el8_7.1.x86_64
libipt-1.6.1-8.el8.x86_64
libbabeltrace-1.5.4-4.el8.x86_64
rust-srpm-macros-5-2.el8.noarch
ansible-srpm-macros-1-8.1.el8.noarch
unzip-6.0-46.el8.x86_64
coreutils-common-8.30-13.el8.x86_64
annobin-10.67-3.el8.x86_64
libxcrypt-devel-4.1.1-6.el8.x86_64
redhat-release-8.7-0.3.el8.x86_64
which-2.21-18.el8.x86_64
libzstd-1.4.4-1.el8.x86_64
popt-1.18-1.el8.x86_64
pkgconf-1.4.2-1.el8.x86_64
libstdc++-8.5.0-16.el8_7.x86_64
keyutils-libs-1.5.10-9.el8.x86_64
libacl-2.2.53-1.el8.x86_64
libdb-utils-5.3.28-42.el8_4.x86_64
gdbm-1.18-2.el8.x86_64
libusbx-1.0.23-4.el8.x86_64
gzip-1.9-13.el8_5.x86_64
cpio-2.12-11.el8.x86_64
dwz-0.12-10.el8.x86_64
rpm-4.14.3-24.el8_7.x86_64
libassuan-2.5.1-3.el8.x86_64
libunistring-0.9.9-3.el8.x86_64
sed-4.5-5.el8.x86_64
libsmartcols-2.32.1-39.el8_7.x86_64
lua-srpm-macros-1-3.el8.noarch
binutils-2.30-117.el8.x86_64
pcre-8.42-6.el8.x86_64
findutils-4.6.0-20.el8.x86_64
elfutils-default-yama-scope-0.187-4.el8.noarch
libsemanage-2.9-9.el8_6.x86_64
libksba-1.3.5-8.el8_6.x86_64
nettle-3.4.1-7.el8.x86_64
gcc-plugin-annobin-8.5.0-16.el8_7.x86_64
crypto-policies-20211116-1.gitae470d6.el8.noarch
elfutils-0.187-4.el8.x86_64
libgomp-8.5.0-16.el8_7.x86_64
fpc-srpm-macros-1.3-1.el8.noarch
glibc-devel-2.28-211.el8.x86_64
libattr-2.4.48-3.el8.x86_64
libgcc-8.5.0-16.el8_7.x86_64
libssh-config-0.9.6-3.el8.noarch
publicsuffix-list-dafsa-20180723-1.el8.noarch
libgcrypt-1.8.5-7.el8_6.x86_64
krb5-libs-1.18.2-22.el8_7.x86_64
python-rpm-macros-3-43.el8.noarch
python3-pip-wheel-9.0.3-22.el8.noarch
gpg-pubkey-2fa658e0-45700c69
kernel-headers-4.18.0-425.10.1.el8_7.x86_64
libnsl2-1.2.0-2.20180605git4a062cf.el8.x86_64
audit-libs-3.0.7-4.el8.x86_64
pkgconf-m4-1.4.2-1.el8.noarch
p11-kit-0.23.22-1.el8.x86_64
systemd-libs-239-68.el8_7.2.x86_64
libuuid-2.32.1-39.el8_7.x86_64
pam-1.3.1-22.el8.x86_64
gnupg2-2.2.20-3.el8_6.x86_64
gdbm-libs-1.18-2.el8.x86_64
libverto-0.3.2-2.el8.x86_64
libdb-5.3.28-42.el8_4.x86_64
bzip2-libs-1.0.6-26.el8.x86_64
ca-certificates-2022.2.54-80.2.el8_6.noarch
qt5-srpm-macros-5.15.3-1.el8.noarch
chkconfig-1.19.1-1.el8.x86_64
platform-python-3.6.8-48.el8_7.x86_64
libpsl-0.20.2-6.el8.x86_64
Start: buildsrpm
Start: rpmbuild -bs
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
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sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
warning: bogus date in %changelog: Sat Jul 08 2012 Tim Fenn <tim.fenn@gmail.com> - 1.5.0.2-3.20120218svn3982
warning: bogus date in %changelog: Thu Jul 07 2009 Tim Fenn <fenn@stanford.edu> - 1.2-5.20090709svn3827
Building target platforms: x86_64
Building for target x86_64
Wrote: /builddir/build/SRPMS/pymol-2.5.0-6.el8.src.rpm
Finish: rpmbuild -bs
cp: ‘var/lib/mock/rhel+epel-8-x86_64-1675244409.748214/root/var/log’: No such file or directory
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/rhel+epel-8-x86_64-1675244409.748214/root/var/log/dnf.rpm.log
/var/lib/mock/rhel+epel-8-x86_64-1675244409.748214/root/var/log/dnf.librepo.log
/var/lib/mock/rhel+epel-8-x86_64-1675244409.748214/root/var/log/dnf.log
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-fwhhr2z0/pymol/pymol.spec) Config(child) 2 minutes 39 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running (timeout=18000): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/pymol-2.5.0-6.el8.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1675244409.748214 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)...
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/results/pymol-2.5.0-6.el8.src.rpm)  Config(rhel+epel-8-x86_64)
Start: clean chroot
Finish: clean chroot
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/rhel+epel-8-x86_64-bootstrap-1675244409.748214/root.
INFO: reusing tmpfs at /var/lib/mock/rhel+epel-8-x86_64-bootstrap-1675244409.748214/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/rhel+epel-8-x86_64-1675244409.748214/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
Mock Version: 3.5
INFO: Mock Version: 3.5
Start: dnf update
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity

This system is not registered with an entitlement server. You can use subscription-manager to register.

Copr repository                                  72 kB/s | 3.0 kB     00:00    
Red Hat Enterprise Linux - BaseOS                15 kB/s | 4.1 kB     00:00    
Red Hat Enterprise Linux - AppStream             18 kB/s | 4.5 kB     00:00    
Red Hat Enterprise Linux - CodeReady Linux Buil  13 kB/s | 4.5 kB     00:00    
Extra Packages for Enterprise Linux 8 - x86_64  763 kB/s |  22 kB     00:00    
Dependencies resolved.
Nothing to do.
Complete!
Finish: dnf update
Finish: chroot init
Start: build phase for pymol-2.5.0-6.el8.src.rpm
Start: build setup for pymol-2.5.0-6.el8.src.rpm
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
sh: /usr/bin/python3.6: No such file or directory
warning: bogus date in %changelog: Sat Jul 08 2012 Tim Fenn <tim.fenn@gmail.com> - 1.5.0.2-3.20120218svn3982
warning: bogus date in %changelog: Thu Jul 07 2009 Tim Fenn <fenn@stanford.edu> - 1.2-5.20090709svn3827
Building target platforms: x86_64
Building for target x86_64
Wrote: /builddir/build/SRPMS/pymol-2.5.0-6.el8.src.rpm
No matches found for the following disable plugin patterns: local, spacewalk, versionlock
Updating Subscription Management repositories.
Unable to read consumer identity

This system is not registered with an entitlement server. You can use subscription-manager to register.

Copr repository                                  86 kB/s | 3.0 kB     00:00    
Red Hat Enterprise Linux - BaseOS                13 kB/s | 4.1 kB     00:00    
Red Hat Enterprise Linux - AppStream             15 kB/s | 4.5 kB     00:00    
Red Hat Enterprise Linux - CodeReady Linux Buil  19 kB/s | 4.5 kB     00:00    
Extra Packages for Enterprise Linux 8 - x86_64  750 kB/s |  22 kB     00:00    
Package gcc-c++-8.5.0-16.el8_7.x86_64 is already installed.
Dependencies resolved.
======================================================================================================
 Package                       Arch    Version                                Repository          Size
======================================================================================================
Installing:
 catch-devel                   x86_64  2.13.8-1.el8                           epel               212 k
 desktop-file-utils            x86_64  0.23-8.el8                             rhel-appstream      80 k
 freeglut-devel                x86_64  3.0.0-8.el8                            rhel-appstream     121 k
 freetype-devel                x86_64  2.9.1-9.el8                            rhel-baseos        465 k
 glew-devel                    x86_64  2.0.0-6.el8                            codeready-builder  194 k
 glm-devel                     noarch  0.9.8.5-2.el8                          codeready-builder  206 k
 libappstream-glib             x86_64  0.7.14-3.el8                           rhel-baseos        338 k
 libpng-devel                  x86_64  2:1.6.34-5.el8                         rhel-baseos        328 k
 libxml2-devel                 x86_64  2.9.7-15.el8_7.1                       rhel-appstream     1.0 M
 mesa-libGL-devel              x86_64  22.1.5-2.el8                           rhel-appstream      52 k
 mmtf-cpp-devel                x86_64  1.1.0-1.el8                            epel                32 k
 msgpack-devel                 x86_64  3.1.0-3.el8                            epel               308 k
 netcdf-devel                  x86_64  4.7.0-2.el8                            epel               121 k
 python3-mmtf                  noarch  1.1.2-4.el8                            epel                56 k
 python3-numpy                 x86_64  1:1.14.3-10.el8                        rhel-appstream     3.7 M
 python3-qt5-devel             x86_64  5.15.0-3.el8                           codeready-builder  578 k
 python3-setuptools            noarch  39.2.0-6.el8                           rhel-baseos        163 k
 python3-simplejson            x86_64  3.17.0-2.el8                           epel               286 k
 python36-devel                x86_64  3.6.8-38.module+el8.5.0+12207+5c5719bc rhel-appstream      17 k
Installing dependencies:
 abattis-cantarell-fonts       noarch  0.0.25-6.el8                           rhel-appstream     156 k
 alsa-lib                      x86_64  1.2.7.2-1.el8                          rhel-appstream     496 k
 avahi-libs                    x86_64  0.7-20.el8                             rhel-baseos         62 k
 bluez-libs                    x86_64  5.63-1.el8                             rhel-baseos        114 k
 bzip2-devel                   x86_64  1.0.6-26.el8                           rhel-baseos        224 k
 cairo                         x86_64  1.15.12-6.el8                          rhel-appstream     719 k
 cmake                         x86_64  3.20.2-4.el8                           rhel-appstream      12 M
 cmake-data                    noarch  3.20.2-4.el8                           rhel-appstream     1.7 M
 cmake-filesystem              x86_64  3.20.2-4.el8                           rhel-appstream      45 k
 cmake-rpm-macros              noarch  3.20.2-4.el8                           rhel-appstream      44 k
 cups-libs                     x86_64  1:2.2.6-50.el8                         rhel-baseos        435 k
 dbus-glib                     x86_64  0.110-2.el8                            rhel-baseos        127 k
 dbus-libs                     x86_64  1:1.12.8-23.el8_7.1                    rhel-baseos        185 k
 emacs-filesystem              noarch  1:26.1-7.el8                           rhel-baseos         70 k
 flac-libs                     x86_64  1.3.2-9.el8                            rhel-appstream     217 k
 fontconfig                    x86_64  2.13.1-4.el8                           rhel-baseos        274 k
 fontpackages-filesystem       noarch  1.44-22.el8                            rhel-baseos         16 k
 freeglut                      x86_64  3.0.0-8.el8                            rhel-appstream     191 k
 freetype                      x86_64  2.9.1-9.el8                            rhel-baseos        394 k
 fribidi                       x86_64  1.0.4-9.el8                            rhel-appstream      89 k
 gcc-gfortran                  x86_64  8.5.0-16.el8_7                         rhel-appstream      12 M
 gdk-pixbuf2                   x86_64  2.36.12-5.el8                          rhel-baseos        467 k
 gl-manpages                   noarch  1.1-15.20161227.el8                    rhel-appstream     1.2 M
 glib-networking               x86_64  2.56.1-1.1.el8                         rhel-baseos        155 k
 glx-utils                     x86_64  8.4.0-5.20181118git1830dcb.el8         rhel-appstream      44 k
 graphite2                     x86_64  1.3.10-10.el8                          rhel-appstream     122 k
 groff-base                    x86_64  1.22.3-18.el8                          rhel-baseos        1.0 M
 gsettings-desktop-schemas     x86_64  3.32.0-6.el8                           rhel-baseos        633 k
 gsm                           x86_64  1.0.17-5.el8                           rhel-appstream      37 k
 gstreamer1                    x86_64  1.16.1-2.el8                           rhel-appstream     1.3 M
 gstreamer1-plugins-bad-free   x86_64  1.16.1-1.el8                           rhel-appstream     1.8 M
 gstreamer1-plugins-base       x86_64  1.16.1-2.el8                           rhel-appstream     2.0 M
 harfbuzz                      x86_64  1.7.5-3.el8                            rhel-appstream     294 k
 hdf                           x86_64  4.2.14-5.el8                           epel               651 k
 hdf5                          x86_64  1.10.5-4.el8                           epel               2.1 M
 hdf5-devel                    x86_64  1.10.5-4.el8                           epel               1.2 M
 hwdata                        noarch  0.314-8.14.el8                         rhel-baseos        1.7 M
 iso-codes                     noarch  3.79-2.el8                             rhel-appstream     3.4 M
 json-glib                     x86_64  1.4.4-1.el8                            rhel-baseos        144 k
 lcms2                         x86_64  2.9-2.el8                              rhel-appstream     165 k
 libGLEW                       x86_64  2.0.0-6.el8                            codeready-builder  143 k
 libICE                        x86_64  1.0.9-15.el8                           rhel-appstream      74 k
 libSM                         x86_64  1.2.3-1.el8                            rhel-appstream      48 k
 libX11                        x86_64  1.6.8-5.el8                            rhel-appstream     611 k
 libX11-common                 noarch  1.6.8-5.el8                            rhel-appstream     158 k
 libX11-devel                  x86_64  1.6.8-5.el8                            rhel-appstream     976 k
 libX11-xcb                    x86_64  1.6.8-5.el8                            rhel-appstream      14 k
 libXau                        x86_64  1.0.9-3.el8                            rhel-appstream      37 k
 libXau-devel                  x86_64  1.0.9-3.el8                            rhel-appstream      21 k
 libXext                       x86_64  1.3.4-1.el8                            rhel-appstream      45 k
 libXfixes                     x86_64  5.0.3-7.el8                            rhel-appstream      25 k
 libXft                        x86_64  2.3.3-1.el8                            rhel-appstream      67 k
 libXi                         x86_64  1.7.10-1.el8                           rhel-appstream      49 k
 libXrender                    x86_64  0.9.10-7.el8                           rhel-appstream      33 k
 libXtst                       x86_64  1.2.3-7.el8                            rhel-appstream      22 k
 libXv                         x86_64  1.0.11-7.el8                           rhel-appstream      20 k
 libXxf86vm                    x86_64  1.1.4-9.el8                            rhel-appstream      19 k
 libaec                        x86_64  1.0.2-3.el8                            codeready-builder   39 k
 libaec-devel                  x86_64  1.0.2-3.el8                            codeready-builder   12 k
 libasyncns                    x86_64  0.8-14.el8                             rhel-appstream      32 k
 libcroco                      x86_64  0.6.12-4.el8_2.1                       rhel-baseos        113 k
 libcurl-devel                 x86_64  7.61.1-25.el8_7.1                      rhel-baseos        834 k
 libdatrie                     x86_64  0.2.9-7.el8                            rhel-appstream      33 k
 libdrm                        x86_64  2.4.111-1.el8                          rhel-appstream     163 k
 libdrm-devel                  x86_64  2.4.111-1.el8                          rhel-appstream     167 k
 libdvdnav                     x86_64  5.0.3-8.el8                            rhel-appstream      61 k
 libdvdread                    x86_64  5.0.3-9.el8                            rhel-appstream      75 k
 libevdev                      x86_64  1.10.0-1.el8                           rhel-appstream      44 k
 libgfortran                   x86_64  8.5.0-16.el8_7                         rhel-baseos        644 k
 libglvnd                      x86_64  1:1.3.4-1.el8                          rhel-appstream     128 k
 libglvnd-core-devel           x86_64  1:1.3.4-1.el8                          rhel-appstream      25 k
 libglvnd-devel                x86_64  1:1.3.4-1.el8                          rhel-appstream     185 k
 libglvnd-egl                  x86_64  1:1.3.4-1.el8                          rhel-appstream      49 k
 libglvnd-gles                 x86_64  1:1.3.4-1.el8                          rhel-appstream      40 k
 libglvnd-glx                  x86_64  1:1.3.4-1.el8                          rhel-appstream     137 k
 libglvnd-opengl               x86_64  1:1.3.4-1.el8                          rhel-appstream      47 k
 libgudev                      x86_64  232-4.el8                              rhel-baseos         33 k
 libicu                        x86_64  60.3-2.el8_1                           rhel-baseos        8.8 M
 libinput                      x86_64  1.16.3-3.el8_6                         rhel-appstream     217 k
 libjpeg-turbo                 x86_64  1.5.3-12.el8                           rhel-appstream     157 k
 libmodman                     x86_64  2.0.1-17.el8                           rhel-baseos         36 k
 libogg                        x86_64  2:1.3.2-10.el8                         rhel-appstream      31 k
 libpciaccess                  x86_64  0.14-1.el8                             rhel-baseos         32 k
 libpciaccess-devel            x86_64  0.14-1.el8                             rhel-appstream      19 k
 libpng                        x86_64  2:1.6.34-5.el8                         rhel-baseos        126 k
 libproxy                      x86_64  0.4.15-5.2.el8                         rhel-baseos         74 k
 libquadmath                   x86_64  8.5.0-16.el8_7                         rhel-baseos        172 k
 libquadmath-devel             x86_64  8.5.0-16.el8_7                         rhel-appstream      25 k
 librsvg2                      x86_64  2.42.7-4.el8                           rhel-appstream     555 k
 libsndfile                    x86_64  1.0.28-12.el8                          rhel-appstream     193 k
 libsoup                       x86_64  2.62.3-2.el8                           rhel-baseos        424 k
 libsrtp                       x86_64  1.5.4-8.el8                            rhel-appstream     282 k
 libstemmer                    x86_64  0-10.585svn.el8                        rhel-baseos         73 k
 libthai                       x86_64  0.1.27-2.el8                           rhel-appstream     203 k
 libtheora                     x86_64  1:1.1.1-21.el8                         rhel-appstream     184 k
 libuv                         x86_64  1:1.41.1-1.el8_4                       rhel-appstream     156 k
 libvisual                     x86_64  1:0.4.0-25.el8                         rhel-appstream     145 k
 libvorbis                     x86_64  1:1.3.6-2.el8                          rhel-appstream     196 k
 libwacom                      x86_64  1.6-3.el8                              rhel-appstream      42 k
 libwacom-data                 noarch  1.6-3.el8                              rhel-appstream     104 k
 libwayland-client             x86_64  1.19.0-1.el8                           rhel-appstream      39 k
 libwayland-cursor             x86_64  1.19.0-1.el8                           rhel-appstream      26 k
 libwayland-egl                x86_64  1.19.0-1.el8                           rhel-appstream      19 k
 libwayland-server             x86_64  1.19.0-1.el8                           rhel-appstream      47 k
 libwebp                       x86_64  1.0.0-5.el8                            rhel-appstream     273 k
 libxcb                        x86_64  1.13.1-1.el8                           rhel-appstream     229 k
 libxcb-devel                  x86_64  1.13.1-1.el8                           rhel-appstream     1.1 M
 libxkbcommon                  x86_64  0.9.1-1.el8                            rhel-appstream     116 k
 libxkbcommon-x11              x86_64  0.9.1-1.el8                            rhel-appstream      25 k
 libxshmfence                  x86_64  1.3-2.el8                              rhel-appstream      13 k
 mesa-libEGL                   x86_64  22.1.5-2.el8                           rhel-appstream     142 k
 mesa-libEGL-devel             x86_64  22.1.5-2.el8                           rhel-appstream      35 k
 mesa-libGL                    x86_64  22.1.5-2.el8                           rhel-appstream     187 k
 mesa-libGLU                   x86_64  9.0.0-15.el8                           rhel-appstream     185 k
 mesa-libGLU-devel             x86_64  9.0.0-15.el8                           rhel-appstream      15 k
 mesa-libgbm                   x86_64  22.1.5-2.el8                           rhel-appstream      59 k
 mesa-libglapi                 x86_64  22.1.5-2.el8                           rhel-appstream      66 k
 msgpack                       x86_64  3.1.0-3.el8                            epel                29 k
 mtdev                         x86_64  1.1.5-12.el8                           rhel-appstream      24 k
 netcdf                        x86_64  4.7.0-2.el8                            epel               647 k
 openal-soft                   x86_64  1.18.2-7.el8                           rhel-appstream     394 k
 openblas                      x86_64  0.3.15-4.el8                           rhel-appstream     4.7 M
 openblas-threads              x86_64  0.3.15-4.el8                           rhel-appstream     4.9 M
 opus                          x86_64  1.3-0.4.beta.el8                       rhel-appstream     204 k
 orc                           x86_64  0.4.28-3.el8                           rhel-appstream     175 k
 pango                         x86_64  1.42.4-8.el8                           rhel-appstream     297 k
 pcre2-utf16                   x86_64  10.32-3.el8_6                          rhel-baseos        229 k
 perl-Carp                     noarch  1.42-396.el8                           rhel-baseos         30 k
 perl-Encode                   x86_64  4:2.97-3.el8                           rhel-baseos        1.5 M
 perl-Errno                    x86_64  1.28-421.el8                           rhel-baseos         76 k
 perl-Exporter                 noarch  5.72-396.el8                           rhel-baseos         34 k
 perl-File-Path                noarch  2.15-2.el8                             rhel-baseos         38 k
 perl-File-Temp                noarch  0.230.600-1.el8                        rhel-baseos         63 k
 perl-Getopt-Long              noarch  1:2.50-4.el8                           rhel-baseos         63 k
 perl-HTTP-Tiny                noarch  0.074-1.el8                            rhel-baseos         58 k
 perl-IO                       x86_64  1.38-421.el8                           rhel-baseos        142 k
 perl-MIME-Base64              x86_64  3.15-396.el8                           rhel-baseos         31 k
 perl-PathTools                x86_64  3.74-1.el8                             rhel-baseos         90 k
 perl-Pod-Escapes              noarch  1:1.07-395.el8                         rhel-baseos         20 k
 perl-Pod-Perldoc              noarch  3.28-396.el8                           rhel-baseos         88 k
 perl-Pod-Simple               noarch  1:3.35-395.el8                         rhel-baseos        213 k
 perl-Pod-Usage                noarch  4:1.69-395.el8                         rhel-baseos         34 k
 perl-Scalar-List-Utils        x86_64  3:1.49-2.el8                           rhel-baseos         68 k
 perl-Socket                   x86_64  4:2.027-3.el8                          rhel-baseos         59 k
 perl-Storable                 x86_64  1:3.11-3.el8                           rhel-baseos         98 k
 perl-Term-ANSIColor           noarch  4.06-396.el8                           rhel-baseos         46 k
 perl-Term-Cap                 noarch  1.17-395.el8                           rhel-baseos         23 k
 perl-Text-ParseWords          noarch  3.30-395.el8                           rhel-baseos         18 k
 perl-Text-Tabs+Wrap           noarch  2013.0523-395.el8                      rhel-baseos         24 k
 perl-Time-Local               noarch  1:1.280-1.el8                          rhel-baseos         34 k
 perl-Unicode-Normalize        x86_64  1.25-396.el8                           rhel-baseos         82 k
 perl-constant                 noarch  1.33-396.el8                           rhel-baseos         25 k
 perl-interpreter              x86_64  4:5.26.3-421.el8                       rhel-baseos        6.3 M
 perl-libs                     x86_64  4:5.26.3-421.el8                       rhel-baseos        1.6 M
 perl-macros                   x86_64  4:5.26.3-421.el8                       rhel-baseos         72 k
 perl-parent                   noarch  1:0.237-1.el8                          rhel-baseos         20 k
 perl-podlators                noarch  4.11-1.el8                             rhel-baseos        118 k
 perl-threads                  x86_64  1:2.21-2.el8                           rhel-baseos         61 k
 perl-threads-shared           x86_64  1.58-2.el8                             rhel-baseos         48 k
 pixman                        x86_64  0.38.4-2.el8                           rhel-appstream     257 k
 platform-python-devel         x86_64  3.6.8-48.el8_7                         rhel-appstream     250 k
 platform-python-pip           noarch  9.0.3-22.el8                           rhel-baseos        1.6 M
 pulseaudio-libs               x86_64  14.0-4.el8                             rhel-appstream     682 k
 pulseaudio-libs-glib2         x86_64  14.0-4.el8                             rhel-appstream      31 k
 python-qt5-rpm-macros         noarch  5.15.0-3.el8                           rhel-appstream      18 k
 python3-dbus                  x86_64  1.2.4-15.el8                           rhel-baseos        134 k
 python3-msgpack               x86_64  0.6.2-1.el8                            epel                92 k
 python3-pip                   noarch  9.0.3-22.el8                           rhel-appstream      20 k
 python3-pyqt5-sip             x86_64  4.19.25-1.el8                          rhel-appstream      92 k
 python3-qt5                   x86_64  5.15.0-3.el8                           rhel-appstream     1.2 M
 python3-qt5-base              x86_64  5.15.0-3.el8                           rhel-appstream     3.2 M
 python3-rpm-generators        noarch  5-7.el8                                rhel-appstream      25 k
 python3-sip-devel             x86_64  4.19.25-1.el8                          codeready-builder   65 k
 python36                      x86_64  3.6.8-38.module+el8.5.0+12207+5c5719bc rhel-appstream      19 k
 python36-rpm-macros           noarch  3.6.8-38.module+el8.5.0+12207+5c5719bc rhel-appstream      16 k
 qt5-qtbase                    x86_64  5.15.3-1.el8                           rhel-appstream     3.6 M
 qt5-qtbase-common             noarch  5.15.3-1.el8                           rhel-appstream      41 k
 qt5-qtbase-devel              x86_64  5.15.3-1.el8                           rhel-appstream     3.4 M
 qt5-qtbase-gui                x86_64  5.15.3-1.el8                           rhel-appstream     6.1 M
 qt5-qtconnectivity            x86_64  5.15.3-1.el8                           rhel-appstream     539 k
 qt5-qtdeclarative             x86_64  5.15.3-1.el8                           rhel-appstream     4.2 M
 qt5-qtlocation                x86_64  5.15.3-1.el8                           rhel-appstream     3.2 M
 qt5-qtmultimedia              x86_64  5.15.3-1.el8                           rhel-appstream     882 k
 qt5-qtsensors                 x86_64  5.15.3-1.el8                           rhel-appstream     219 k
 qt5-qtserialport              x86_64  5.15.3-1.el8                           rhel-appstream      71 k
 qt5-qtsvg                     x86_64  5.15.3-1.el8                           rhel-appstream     185 k
 qt5-qttools-common            noarch  5.15.3-2.el8                           rhel-appstream      22 k
 qt5-qttools-libs-designer     x86_64  5.15.3-2.el8                           rhel-appstream     2.8 M
 qt5-qttools-libs-help         x86_64  5.15.3-2.el8                           rhel-appstream     195 k
 qt5-qtwebchannel              x86_64  5.15.3-1.el8                           rhel-appstream     102 k
 qt5-qtwebsockets              x86_64  5.15.3-1.el8                           rhel-appstream     102 k
 qt5-qtx11extras               x86_64  5.15.3-1.el8                           rhel-appstream      40 k
 qt5-qtxmlpatterns             x86_64  5.15.3-1.el8                           rhel-appstream     1.1 M
 qt5-rpm-macros                noarch  5.15.3-1.el8                           rhel-appstream      12 k
 shared-mime-info              x86_64  1.9-3.el8                              rhel-baseos        329 k
 sip                           x86_64  4.19.25-1.el8                          rhel-appstream     190 k
 soundtouch                    x86_64  2.0.0-3.el8                            rhel-appstream      76 k
 valgrind                      x86_64  1:3.19.0-1.el8                         rhel-appstream      11 M
 valgrind-devel                x86_64  1:3.19.0-1.el8                         rhel-appstream      94 k
 vim-filesystem                noarch  2:8.0.1763-19.el8_6.4                  rhel-appstream      50 k
 webrtc-audio-processing       x86_64  0.3-10.el8                             rhel-appstream     297 k
 xcb-util                      x86_64  0.4.0-10.el8                           rhel-appstream      22 k
 xcb-util-image                x86_64  0.4.0-9.el8                            rhel-appstream      21 k
 xcb-util-keysyms              x86_64  0.4.0-7.el8                            rhel-appstream      16 k
 xcb-util-renderutil           x86_64  0.3.9-10.el8                           rhel-appstream      19 k
 xcb-util-wm                   x86_64  0.4.1-12.el8                           rhel-appstream      32 k
 xkeyboard-config              noarch  2.28-1.el8                             rhel-appstream     782 k
 xml-common                    noarch  0.6.3-50.el8                           rhel-baseos         39 k
 xorg-x11-proto-devel          noarch  2020.1-3.el8                           rhel-appstream     280 k
 xz-devel                      x86_64  5.2.4-4.el8_6                          rhel-baseos         63 k
 zlib-devel                    x86_64  1.2.11-21.el8_7                        rhel-baseos         58 k
Enabling module streams:
 python36                              3.6                                                            

Transaction Summary
======================================================================================================
Install  230 Packages

Total download size: 146 M
Installed size: 538 M
Downloading Packages:
(1/230): perl-Scalar-List-Utils-1.49-2.el8.x86_ 198 kB/s |  68 kB     00:00    
(2/230): perl-PathTools-3.74-1.el8.x86_64.rpm   262 kB/s |  90 kB     00:00    
(3/230): bzip2-devel-1.0.6-26.el8.x86_64.rpm    571 kB/s | 224 kB     00:00    
(4/230): perl-threads-shared-1.58-2.el8.x86_64. 346 kB/s |  48 kB     00:00    
(5/230): json-glib-1.4.4-1.el8.x86_64.rpm       704 kB/s | 144 kB     00:00    
(6/230): libmodman-2.0.1-17.el8.x86_64.rpm      226 kB/s |  36 kB     00:00    
(7/230): shared-mime-info-1.9-3.el8.x86_64.rpm  1.2 MB/s | 329 kB     00:00    
(8/230): libproxy-0.4.15-5.2.el8.x86_64.rpm     543 kB/s |  74 kB     00:00    
(9/230): libpng-1.6.34-5.el8.x86_64.rpm         791 kB/s | 126 kB     00:00    
(10/230): perl-Encode-2.97-3.el8.x86_64.rpm     5.6 MB/s | 1.5 MB     00:00    
(11/230): libgudev-232-4.el8.x86_64.rpm         250 kB/s |  33 kB     00:00    
(12/230): libappstream-glib-0.7.14-3.el8.x86_64 2.0 MB/s | 338 kB     00:00    
(13/230): groff-base-1.22.3-18.el8.x86_64.rpm   5.4 MB/s | 1.0 MB     00:00    
(14/230): perl-Unicode-Normalize-1.25-396.el8.x 513 kB/s |  82 kB     00:00    
(15/230): libpng-devel-1.6.34-5.el8.x86_64.rpm  2.4 MB/s | 328 kB     00:00    
(16/230): perl-MIME-Base64-3.15-396.el8.x86_64. 195 kB/s |  31 kB     00:00    
(17/230): fontpackages-filesystem-1.44-22.el8.n 122 kB/s |  16 kB     00:00    
(18/230): perl-threads-2.21-2.el8.x86_64.rpm    441 kB/s |  61 kB     00:00    
(19/230): perl-Pod-Simple-3.35-395.el8.noarch.r 1.5 MB/s | 213 kB     00:00    
(20/230): libstemmer-0-10.585svn.el8.x86_64.rpm 517 kB/s |  73 kB     00:00    
(21/230): perl-Term-ANSIColor-4.06-396.el8.noar 356 kB/s |  46 kB     00:00    
(22/230): dbus-glib-0.110-2.el8.x86_64.rpm      706 kB/s | 127 kB     00:00    
(23/230): perl-HTTP-Tiny-0.074-1.el8.noarch.rpm 420 kB/s |  58 kB     00:00    
(24/230): perl-Pod-Escapes-1.07-395.el8.noarch. 152 kB/s |  20 kB     00:00    
(25/230): perl-Pod-Perldoc-3.28-396.el8.noarch. 598 kB/s |  88 kB     00:00    
(26/230): perl-parent-0.237-1.el8.noarch.rpm    150 kB/s |  20 kB     00:00    
(27/230): perl-File-Path-2.15-2.el8.noarch.rpm  245 kB/s |  38 kB     00:00    
(28/230): xml-common-0.6.3-50.el8.noarch.rpm    290 kB/s |  39 kB     00:00    
(29/230): perl-Text-Tabs+Wrap-2013.0523-395.el8 186 kB/s |  24 kB     00:00    
(30/230): perl-Getopt-Long-2.50-4.el8.noarch.rp 453 kB/s |  63 kB     00:00    
(31/230): perl-podlators-4.11-1.el8.noarch.rpm  923 kB/s | 118 kB     00:00    
(32/230): libpciaccess-0.14-1.el8.x86_64.rpm    206 kB/s |  32 kB     00:00    
(33/230): perl-Time-Local-1.280-1.el8.noarch.rp 257 kB/s |  34 kB     00:00    
(34/230): perl-Carp-1.42-396.el8.noarch.rpm     242 kB/s |  30 kB     00:00    
(35/230): perl-Exporter-5.72-396.el8.noarch.rpm 251 kB/s |  34 kB     00:00    
(36/230): perl-Storable-3.11-3.el8.x86_64.rpm   679 kB/s |  98 kB     00:00    
(37/230): perl-Text-ParseWords-3.30-395.el8.noa 139 kB/s |  18 kB     00:00    
(38/230): glib-networking-2.56.1-1.1.el8.x86_64 1.1 MB/s | 155 kB     00:00    
(39/230): perl-File-Temp-0.230.600-1.el8.noarch 447 kB/s |  63 kB     00:00    
(40/230): perl-constant-1.33-396.el8.noarch.rpm 182 kB/s |  25 kB     00:00    
(41/230): perl-Term-Cap-1.17-395.el8.noarch.rpm 176 kB/s |  23 kB     00:00    
(42/230): perl-Pod-Usage-1.69-395.el8.noarch.rp 228 kB/s |  34 kB     00:00    
(43/230): gdk-pixbuf2-2.36.12-5.el8.x86_64.rpm  3.5 MB/s | 467 kB     00:00    
(44/230): perl-Socket-2.027-3.el8.x86_64.rpm    401 kB/s |  59 kB     00:00    
(45/230): python3-dbus-1.2.4-15.el8.x86_64.rpm  986 kB/s | 134 kB     00:00    
(46/230): libsoup-2.62.3-2.el8.x86_64.rpm       2.8 MB/s | 424 kB     00:00    
(47/230): libcroco-0.6.12-4.el8_2.1.x86_64.rpm  836 kB/s | 113 kB     00:00    
(48/230): python3-setuptools-39.2.0-6.el8.noarc 947 kB/s | 163 kB     00:00    
(49/230): avahi-libs-0.7-20.el8.x86_64.rpm      403 kB/s |  62 kB     00:00    
(50/230): libicu-60.3-2.el8_1.x86_64.rpm         18 MB/s | 8.8 MB     00:00    
(51/230): gsettings-desktop-schemas-3.32.0-6.el 4.0 MB/s | 633 kB     00:00    
(52/230): emacs-filesystem-26.1-7.el8.noarch.rp 525 kB/s |  70 kB     00:00    
(53/230): fontconfig-2.13.1-4.el8.x86_64.rpm    2.0 MB/s | 274 kB     00:00    
(54/230): platform-python-pip-9.0.3-22.el8.noar 8.6 MB/s | 1.6 MB     00:00    
(55/230): perl-IO-1.38-421.el8.x86_64.rpm       1.0 MB/s | 142 kB     00:00    
(56/230): perl-libs-5.26.3-421.el8.x86_64.rpm   9.3 MB/s | 1.6 MB     00:00    
(57/230): xz-devel-5.2.4-4.el8_6.x86_64.rpm     360 kB/s |  63 kB     00:00    
(58/230): perl-macros-5.26.3-421.el8.x86_64.rpm 512 kB/s |  72 kB     00:00    
(59/230): perl-interpreter-5.26.3-421.el8.x86_6  28 MB/s | 6.3 MB     00:00    
(60/230): freetype-2.9.1-9.el8.x86_64.rpm       2.9 MB/s | 394 kB     00:00    
(61/230): perl-Errno-1.28-421.el8.x86_64.rpm    515 kB/s |  76 kB     00:00    
(62/230): freetype-devel-2.9.1-9.el8.x86_64.rpm 3.4 MB/s | 465 kB     00:00    
(63/230): pcre2-utf16-10.32-3.el8_6.x86_64.rpm  1.5 MB/s | 229 kB     00:00    
(64/230): hwdata-0.314-8.14.el8.noarch.rpm       11 MB/s | 1.7 MB     00:00    
(65/230): cups-libs-2.2.6-50.el8.x86_64.rpm     3.2 MB/s | 435 kB     00:00    
(66/230): bluez-libs-5.63-1.el8.x86_64.rpm      856 kB/s | 114 kB     00:00    
(67/230): libquadmath-8.5.0-16.el8_7.x86_64.rpm 1.3 MB/s | 172 kB     00:00    
(68/230): libgfortran-8.5.0-16.el8_7.x86_64.rpm 4.4 MB/s | 644 kB     00:00    
(69/230): dbus-libs-1.12.8-23.el8_7.1.x86_64.rp 1.4 MB/s | 185 kB     00:00    
(70/230): libcurl-devel-7.61.1-25.el8_7.1.x86_6 5.8 MB/s | 834 kB     00:00    
(71/230): zlib-devel-1.2.11-21.el8_7.x86_64.rpm 426 kB/s |  58 kB     00:00    
(72/230): xcb-util-wm-0.4.1-12.el8.x86_64.rpm   244 kB/s |  32 kB     00:00    
(73/230): iso-codes-3.79-2.el8.noarch.rpm        18 MB/s | 3.4 MB     00:00    
(74/230): gl-manpages-1.1-15.20161227.el8.noarc 8.0 MB/s | 1.2 MB     00:00    
(75/230): lcms2-2.9-2.el8.x86_64.rpm            1.2 MB/s | 165 kB     00:00    
(76/230): mesa-libGLU-devel-9.0.0-15.el8.x86_64 108 kB/s |  15 kB     00:00    
(77/230): libtheora-1.1.1-21.el8.x86_64.rpm     1.1 MB/s | 184 kB     00:00    
(78/230): libXtst-1.2.3-7.el8.x86_64.rpm        165 kB/s |  22 kB     00:00    
(79/230): flac-libs-1.3.2-9.el8.x86_64.rpm      1.6 MB/s | 217 kB     00:00    
(80/230): libdvdnav-5.0.3-8.el8.x86_64.rpm      473 kB/s |  61 kB     00:00    
(81/230): libsrtp-1.5.4-8.el8.x86_64.rpm        2.1 MB/s | 282 kB     00:00    
(82/230): xcb-util-image-0.4.0-9.el8.x86_64.rpm  83 kB/s |  21 kB     00:00    
(83/230): graphite2-1.3.10-10.el8.x86_64.rpm    943 kB/s | 122 kB     00:00    
(84/230): libogg-1.3.2-10.el8.x86_64.rpm        224 kB/s |  31 kB     00:00    
(85/230): libSM-1.2.3-1.el8.x86_64.rpm          379 kB/s |  48 kB     00:00    
(86/230): xcb-util-keysyms-0.4.0-7.el8.x86_64.r 122 kB/s |  16 kB     00:00    
(87/230): libXfixes-5.0.3-7.el8.x86_64.rpm      189 kB/s |  25 kB     00:00    
(88/230): freeglut-3.0.0-8.el8.x86_64.rpm       1.5 MB/s | 191 kB     00:00    
(89/230): freeglut-devel-3.0.0-8.el8.x86_64.rpm 920 kB/s | 121 kB     00:00    
(90/230): libXxf86vm-1.1.4-9.el8.x86_64.rpm     142 kB/s |  19 kB     00:00    
(91/230): xcb-util-0.4.0-10.el8.x86_64.rpm      149 kB/s |  22 kB     00:00    
(92/230): libthai-0.1.27-2.el8.x86_64.rpm       1.6 MB/s | 203 kB     00:00    
(93/230): opus-1.3-0.4.beta.el8.x86_64.rpm      1.5 MB/s | 204 kB     00:00    
(94/230): libdvdread-5.0.3-9.el8.x86_64.rpm     600 kB/s |  75 kB     00:00    
(95/230): harfbuzz-1.7.5-3.el8.x86_64.rpm       2.2 MB/s | 294 kB     00:00    
(96/230): mesa-libGLU-9.0.0-15.el8.x86_64.rpm   1.3 MB/s | 185 kB     00:00    
(97/230): xcb-util-renderutil-0.3.9-10.el8.x86_ 141 kB/s |  19 kB     00:00    
(98/230): libasyncns-0.8-14.el8.x86_64.rpm      258 kB/s |  32 kB     00:00    
(99/230): libXrender-0.9.10-7.el8.x86_64.rpm    250 kB/s |  33 kB     00:00    
(100/230): libdatrie-0.2.9-7.el8.x86_64.rpm     266 kB/s |  33 kB     00:00    
(101/230): libxshmfence-1.3-2.el8.x86_64.rpm     91 kB/s |  13 kB     00:00    
(102/230): gsm-1.0.17-5.el8.x86_64.rpm          294 kB/s |  37 kB     00:00    
(103/230): openal-soft-1.18.2-7.el8.x86_64.rpm  2.8 MB/s | 394 kB     00:00    
(104/230): libXv-1.0.11-7.el8.x86_64.rpm        146 kB/s |  20 kB     00:00    
(105/230): desktop-file-utils-0.23-8.el8.x86_64 610 kB/s |  80 kB     00:00    
(106/230): mtdev-1.1.5-12.el8.x86_64.rpm        189 kB/s |  24 kB     00:00    
(107/230): libvorbis-1.3.6-2.el8.x86_64.rpm     1.5 MB/s | 196 kB     00:00    
(108/230): libICE-1.0.9-15.el8.x86_64.rpm       572 kB/s |  74 kB     00:00    
(109/230): libxkbcommon-0.9.1-1.el8.x86_64.rpm  889 kB/s | 116 kB     00:00    
(110/230): gstreamer1-plugins-bad-free-1.16.1-1  12 MB/s | 1.8 MB     00:00    
(111/230): xkeyboard-config-2.28-1.el8.noarch.r 5.6 MB/s | 782 kB     00:00    
(112/230): gstreamer1-1.16.1-2.el8.x86_64.rpm   8.5 MB/s | 1.3 MB     00:00    
(113/230): libxcb-1.13.1-1.el8.x86_64.rpm       1.6 MB/s | 229 kB     00:00    
(114/230): orc-0.4.28-3.el8.x86_64.rpm          1.4 MB/s | 175 kB     00:00    
(115/230): libxkbcommon-x11-0.9.1-1.el8.x86_64. 184 kB/s |  25 kB     00:00    
(116/230): libxcb-devel-1.13.1-1.el8.x86_64.rpm 7.6 MB/s | 1.1 MB     00:00    
(117/230): xorg-x11-proto-devel-2020.1-3.el8.no 2.1 MB/s | 280 kB     00:00    
(118/230): libXext-1.3.4-1.el8.x86_64.rpm       351 kB/s |  45 kB     00:00    
(119/230): libXau-devel-1.0.9-3.el8.x86_64.rpm  160 kB/s |  21 kB     00:00    
(120/230): libXi-1.7.10-1.el8.x86_64.rpm        379 kB/s |  49 kB     00:00    
(121/230): librsvg2-2.42.7-4.el8.x86_64.rpm     4.0 MB/s | 555 kB     00:00    
(122/230): libXft-2.3.3-1.el8.x86_64.rpm        512 kB/s |  67 kB     00:00    
(123/230): libXau-1.0.9-3.el8.x86_64.rpm        307 kB/s |  37 kB     00:00    
(124/230): glx-utils-8.4.0-5.20181118git1830dcb 339 kB/s |  44 kB     00:00    
(125/230): soundtouch-2.0.0-3.el8.x86_64.rpm    619 kB/s |  76 kB     00:00    
(126/230): abattis-cantarell-fonts-0.0.25-6.el8 1.2 MB/s | 156 kB     00:00    
(127/230): libvisual-0.4.0-25.el8.x86_64.rpm    1.1 MB/s | 145 kB     00:00    
(128/230): libuv-1.41.1-1.el8_4.x86_64.rpm      1.2 MB/s | 156 kB     00:00    
(129/230): gstreamer1-plugins-base-1.16.1-2.el8  13 MB/s | 2.0 MB     00:00    
(130/230): python36-3.6.8-38.module+el8.5.0+122 155 kB/s |  19 kB     00:00    
(131/230): python36-rpm-macros-3.6.8-38.module+ 104 kB/s |  16 kB     00:00    
(132/230): libjpeg-turbo-1.5.3-12.el8.x86_64.rp 1.1 MB/s | 157 kB     00:00    
(133/230): libevdev-1.10.0-1.el8.x86_64.rpm     347 kB/s |  44 kB     00:00    
(134/230): libX11-xcb-1.6.8-5.el8.x86_64.rpm    110 kB/s |  14 kB     00:00    
(135/230): libpciaccess-devel-0.14-1.el8.x86_64 150 kB/s |  19 kB     00:00    
(136/230): python3-numpy-1.14.3-10.el8.x86_64.r  20 MB/s | 3.7 MB     00:00    
(137/230): cmake-filesystem-3.20.2-4.el8.x86_64 331 kB/s |  45 kB     00:00    
(138/230): libwayland-cursor-1.19.0-1.el8.x86_6 208 kB/s |  26 kB     00:00    
(139/230): libwayland-egl-1.19.0-1.el8.x86_64.r 154 kB/s |  19 kB     00:00    
(140/230): python3-rpm-generators-5-7.el8.noarc 196 kB/s |  25 kB     00:00    
(141/230): python36-devel-3.6.8-38.module+el8.5  21 kB/s |  17 kB     00:00    
(142/230): pango-1.42.4-8.el8.x86_64.rpm        2.2 MB/s | 297 kB     00:00    
(143/230): libwacom-data-1.6-3.el8.noarch.rpm   757 kB/s | 104 kB     00:00    
(144/230): libX11-1.6.8-5.el8.x86_64.rpm        3.9 MB/s | 611 kB     00:00    
(145/230): libwacom-1.6-3.el8.x86_64.rpm        320 kB/s |  42 kB     00:00    
(146/230): cmake-data-3.20.2-4.el8.noarch.rpm    11 MB/s | 1.7 MB     00:00    
(147/230): libX11-devel-1.6.8-5.el8.x86_64.rpm  6.3 MB/s | 976 kB     00:00    
(148/230): libwayland-server-1.19.0-1.el8.x86_6 321 kB/s |  47 kB     00:00    
(149/230): libX11-common-1.6.8-5.el8.noarch.rpm 1.0 MB/s | 158 kB     00:00    
(150/230): cmake-3.20.2-4.el8.x86_64.rpm         36 MB/s |  12 MB     00:00    
(151/230): libwayland-client-1.19.0-1.el8.x86_6 307 kB/s |  39 kB     00:00    
(152/230): libwebp-1.0.0-5.el8.x86_64.rpm       2.1 MB/s | 273 kB     00:00    
(153/230): cmake-rpm-macros-3.20.2-4.el8.noarch 331 kB/s |  44 kB     00:00    
(154/230): pixman-0.38.4-2.el8.x86_64.rpm       1.9 MB/s | 257 kB     00:00    
(155/230): cairo-1.15.12-6.el8.x86_64.rpm       5.0 MB/s | 719 kB     00:00    
(156/230): libglvnd-glx-1.3.4-1.el8.x86_64.rpm  1.0 MB/s | 137 kB     00:00    
(157/230): libglvnd-egl-1.3.4-1.el8.x86_64.rpm  378 kB/s |  49 kB     00:00    
(158/230): libglvnd-1.3.4-1.el8.x86_64.rpm      828 kB/s | 128 kB     00:00    
(159/230): python3-pip-9.0.3-22.el8.noarch.rpm  154 kB/s |  20 kB     00:00    
(160/230): webrtc-audio-processing-0.3-10.el8.x 2.2 MB/s | 297 kB     00:00    
(161/230): libsndfile-1.0.28-12.el8.x86_64.rpm  1.5 MB/s | 193 kB     00:00    
(162/230): libglvnd-gles-1.3.4-1.el8.x86_64.rpm 318 kB/s |  40 kB     00:00    
(163/230): libglvnd-core-devel-1.3.4-1.el8.x86_ 194 kB/s |  25 kB     00:00    
(164/230): libglvnd-devel-1.3.4-1.el8.x86_64.rp 1.5 MB/s | 185 kB     00:00    
(165/230): libglvnd-opengl-1.3.4-1.el8.x86_64.r 356 kB/s |  47 kB     00:00    
(166/230): vim-filesystem-8.0.1763-19.el8_6.4.n 392 kB/s |  50 kB     00:00    
(167/230): fribidi-1.0.4-9.el8.x86_64.rpm       662 kB/s |  89 kB     00:00    
(168/230): libinput-1.16.3-3.el8_6.x86_64.rpm   1.5 MB/s | 217 kB     00:00    
(169/230): qt5-qtmultimedia-5.15.3-1.el8.x86_64 6.2 MB/s | 882 kB     00:00    
(170/230): qt5-qtsensors-5.15.3-1.el8.x86_64.rp 1.7 MB/s | 219 kB     00:00    
(171/230): qt5-qtsvg-5.15.3-1.el8.x86_64.rpm    1.3 MB/s | 185 kB     00:00    
(172/230): qt5-qtbase-devel-5.15.3-1.el8.x86_64  18 MB/s | 3.4 MB     00:00    
(173/230): qt5-qtwebchannel-5.15.3-1.el8.x86_64 818 kB/s | 102 kB     00:00    
(174/230): mesa-libglapi-22.1.5-2.el8.x86_64.rp 509 kB/s |  66 kB     00:00    
(175/230): mesa-libEGL-22.1.5-2.el8.x86_64.rpm  986 kB/s | 142 kB     00:00    
(176/230): qt5-rpm-macros-5.15.3-1.el8.noarch.r  92 kB/s |  12 kB     00:00    
(177/230): mesa-libgbm-22.1.5-2.el8.x86_64.rpm  478 kB/s |  59 kB     00:00    
(178/230): libdrm-devel-2.4.111-1.el8.x86_64.rp 1.1 MB/s | 167 kB     00:00    
(179/230): python3-pyqt5-sip-4.19.25-1.el8.x86_ 634 kB/s |  92 kB     00:00    
(180/230): valgrind-3.19.0-1.el8.x86_64.rpm      34 MB/s |  11 MB     00:00    
(181/230): alsa-lib-1.2.7.2-1.el8.x86_64.rpm    3.4 MB/s | 496 kB     00:00    
(182/230): qt5-qtbase-common-5.15.3-1.el8.noarc 305 kB/s |  41 kB     00:00    
(183/230): pulseaudio-libs-glib2-14.0-4.el8.x86 216 kB/s |  31 kB     00:00    
(184/230): qt5-qttools-libs-help-5.15.3-2.el8.x 1.4 MB/s | 195 kB     00:00    
(185/230): qt5-qtbase-5.15.3-1.el8.x86_64.rpm    19 MB/s | 3.6 MB     00:00    
(186/230): qt5-qtserialport-5.15.3-1.el8.x86_64 508 kB/s |  71 kB     00:00    
(187/230): pulseaudio-libs-14.0-4.el8.x86_64.rp 4.3 MB/s | 682 kB     00:00    
(188/230): qt5-qttools-common-5.15.3-2.el8.noar 159 kB/s |  22 kB     00:00    
(189/230): qt5-qtx11extras-5.15.3-1.el8.x86_64. 287 kB/s |  40 kB     00:00    
(190/230): sip-4.19.25-1.el8.x86_64.rpm         1.4 MB/s | 190 kB     00:00    
(191/230): libdrm-2.4.111-1.el8.x86_64.rpm      1.2 MB/s | 163 kB     00:00    
(192/230): qt5-qtlocation-5.15.3-1.el8.x86_64.r  15 MB/s | 3.2 MB     00:00    
(193/230): python-qt5-rpm-macros-5.15.0-3.el8.n 127 kB/s |  18 kB     00:00    
(194/230): qt5-qtdeclarative-5.15.3-1.el8.x86_6  20 MB/s | 4.2 MB     00:00    
(195/230): qt5-qtconnectivity-5.15.3-1.el8.x86_ 3.8 MB/s | 539 kB     00:00    
(196/230): valgrind-devel-3.19.0-1.el8.x86_64.r 676 kB/s |  94 kB     00:00    
(197/230): python3-qt5-5.15.0-3.el8.x86_64.rpm  8.1 MB/s | 1.2 MB     00:00    
(198/230): mesa-libGL-devel-22.1.5-2.el8.x86_64 364 kB/s |  52 kB     00:00    
(199/230): python3-qt5-base-5.15.0-3.el8.x86_64  15 MB/s | 3.2 MB     00:00    
(200/230): mesa-libEGL-devel-22.1.5-2.el8.x86_6 206 kB/s |  35 kB     00:00    
(201/230): qt5-qtbase-gui-5.15.3-1.el8.x86_64.r  22 MB/s | 6.1 MB     00:00    
(202/230): qt5-qttools-libs-designer-5.15.3-2.e 5.5 MB/s | 2.8 MB     00:00    
(203/230): mesa-libGL-22.1.5-2.el8.x86_64.rpm   1.0 MB/s | 187 kB     00:00    
(204/230): openblas-threads-0.3.15-4.el8.x86_64  22 MB/s | 4.9 MB     00:00    
(205/230): qt5-qtwebsockets-5.15.3-1.el8.x86_64 707 kB/s | 102 kB     00:00    
(206/230): openblas-0.3.15-4.el8.x86_64.rpm      22 MB/s | 4.7 MB     00:00    
(207/230): qt5-qtxmlpatterns-5.15.3-1.el8.x86_6 4.5 MB/s | 1.1 MB     00:00    
(208/230): platform-python-devel-3.6.8-48.el8_7 1.7 MB/s | 250 kB     00:00    
(209/230): libquadmath-devel-8.5.0-16.el8_7.x86 178 kB/s |  25 kB     00:00    
(210/230): libxml2-devel-2.9.7-15.el8_7.1.x86_6 6.7 MB/s | 1.0 MB     00:00    
(211/230): gcc-gfortran-8.5.0-16.el8_7.x86_64.r  33 MB/s |  12 MB     00:00    
(212/230): libaec-devel-1.0.2-3.el8.x86_64.rpm   88 kB/s |  12 kB     00:00    
(213/230): libaec-1.0.2-3.el8.x86_64.rpm        303 kB/s |  39 kB     00:00    
(214/230): glew-devel-2.0.0-6.el8.x86_64.rpm    1.4 MB/s | 194 kB     00:00    
(215/230): glm-devel-0.9.8.5-2.el8.noarch.rpm   1.5 MB/s | 206 kB     00:00    
(216/230): libGLEW-2.0.0-6.el8.x86_64.rpm       989 kB/s | 143 kB     00:00    
(217/230): python3-qt5-devel-5.15.0-3.el8.x86_6 4.1 MB/s | 578 kB     00:00    
(218/230): python3-sip-devel-4.19.25-1.el8.x86_ 496 kB/s |  65 kB     00:00    
(219/230): catch-devel-2.13.8-1.el8.x86_64.rpm  776 kB/s | 212 kB     00:00    
(220/230): hdf-4.2.14-5.el8.x86_64.rpm          2.0 MB/s | 651 kB     00:00    
(221/230): mmtf-cpp-devel-1.1.0-1.el8.x86_64.rp 561 kB/s |  32 kB     00:00    
(222/230): hdf5-devel-1.10.5-4.el8.x86_64.rpm   7.2 MB/s | 1.2 MB     00:00    
(223/230): msgpack-3.1.0-3.el8.x86_64.rpm       620 kB/s |  29 kB     00:00    
(224/230): msgpack-devel-3.1.0-3.el8.x86_64.rpm 5.8 MB/s | 308 kB     00:00    
(225/230): hdf5-1.10.5-4.el8.x86_64.rpm         5.5 MB/s | 2.1 MB     00:00    
(226/230): netcdf-devel-4.7.0-2.el8.x86_64.rpm  2.6 MB/s | 121 kB     00:00    
(227/230): python3-mmtf-1.1.2-4.el8.noarch.rpm  1.2 MB/s |  56 kB     00:00    
(228/230): netcdf-4.7.0-2.el8.x86_64.rpm        8.7 MB/s | 647 kB     00:00    
(229/230): python3-msgpack-0.6.2-1.el8.x86_64.r 1.9 MB/s |  92 kB     00:00    
(230/230): python3-simplejson-3.17.0-2.el8.x86_ 5.5 MB/s | 286 kB     00:00    
--------------------------------------------------------------------------------
Total                                            12 MB/s | 146 MB     00:12     
Running transaction check
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Running transaction
  Preparing        :                                                        1/1 
  Installing       : cmake-filesystem-3.20.2-4.el8.x86_64                 1/230 
  Installing       : libX11-xcb-1.6.8-5.el8.x86_64                        2/230 
  Installing       : dbus-libs-1:1.12.8-23.el8_7.1.x86_64                 3/230 
  Running scriptlet: dbus-libs-1:1.12.8-23.el8_7.1.x86_64                 3/230 
  Installing       : libpng-2:1.6.34-5.el8.x86_64                         4/230 
  Installing       : freetype-2.9.1-9.el8.x86_64                          5/230 
  Installing       : libglvnd-1:1.3.4-1.el8.x86_64                        6/230 
  Installing       : libICE-1.0.9-15.el8.x86_64                           7/230 
  Installing       : libogg-2:1.3.2-10.el8.x86_64                         8/230 
  Installing       : libaec-1.0.2-3.el8.x86_64                            9/230 
  Installing       : libwayland-client-1.19.0-1.el8.x86_64               10/230 
  Installing       : libjpeg-turbo-1.5.3-12.el8.x86_64                   11/230 
  Installing       : zlib-devel-1.2.11-21.el8_7.x86_64                   12/230 
  Installing       : libSM-1.2.3-1.el8.x86_64                            13/230 
  Installing       : mesa-libglapi-22.1.5-2.el8.x86_64                   14/230 
  Running scriptlet: mesa-libglapi-22.1.5-2.el8.x86_64                   14/230 
  Installing       : gstreamer1-1.16.1-2.el8.x86_64                      15/230 
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Installed products updated.

Installed:
  abattis-cantarell-fonts-0.0.25-6.el8.noarch                                   
  alsa-lib-1.2.7.2-1.el8.x86_64                                                 
  avahi-libs-0.7-20.el8.x86_64                                                  
  bluez-libs-5.63-1.el8.x86_64                                                  
  bzip2-devel-1.0.6-26.el8.x86_64                                               
  cairo-1.15.12-6.el8.x86_64                                                    
  catch-devel-2.13.8-1.el8.x86_64                                               
  cmake-3.20.2-4.el8.x86_64                                                     
  cmake-data-3.20.2-4.el8.noarch                                                
  cmake-filesystem-3.20.2-4.el8.x86_64                                          
  cmake-rpm-macros-3.20.2-4.el8.noarch                                          
  cups-libs-1:2.2.6-50.el8.x86_64                                               
  dbus-glib-0.110-2.el8.x86_64                                                  
  dbus-libs-1:1.12.8-23.el8_7.1.x86_64                                          
  desktop-file-utils-0.23-8.el8.x86_64                                          
  emacs-filesystem-1:26.1-7.el8.noarch                                          
  flac-libs-1.3.2-9.el8.x86_64                                                  
  fontconfig-2.13.1-4.el8.x86_64                                                
  fontpackages-filesystem-1.44-22.el8.noarch                                    
  freeglut-3.0.0-8.el8.x86_64                                                   
  freeglut-devel-3.0.0-8.el8.x86_64                                             
  freetype-2.9.1-9.el8.x86_64                                                   
  freetype-devel-2.9.1-9.el8.x86_64                                             
  fribidi-1.0.4-9.el8.x86_64                                                    
  gcc-gfortran-8.5.0-16.el8_7.x86_64                                            
  gdk-pixbuf2-2.36.12-5.el8.x86_64                                              
  gl-manpages-1.1-15.20161227.el8.noarch                                        
  glew-devel-2.0.0-6.el8.x86_64                                                 
  glib-networking-2.56.1-1.1.el8.x86_64                                         
  glm-devel-0.9.8.5-2.el8.noarch                                                
  glx-utils-8.4.0-5.20181118git1830dcb.el8.x86_64                               
  graphite2-1.3.10-10.el8.x86_64                                                
  groff-base-1.22.3-18.el8.x86_64                                               
  gsettings-desktop-schemas-3.32.0-6.el8.x86_64                                 
  gsm-1.0.17-5.el8.x86_64                                                       
  gstreamer1-1.16.1-2.el8.x86_64                                                
  gstreamer1-plugins-bad-free-1.16.1-1.el8.x86_64                               
  gstreamer1-plugins-base-1.16.1-2.el8.x86_64                                   
  harfbuzz-1.7.5-3.el8.x86_64                                                   
  hdf-4.2.14-5.el8.x86_64                                                       
  hdf5-1.10.5-4.el8.x86_64                                                      
  hdf5-devel-1.10.5-4.el8.x86_64                                                
  hwdata-0.314-8.14.el8.noarch                                                  
  iso-codes-3.79-2.el8.noarch                                                   
  json-glib-1.4.4-1.el8.x86_64                                                  
  lcms2-2.9-2.el8.x86_64                                                        
  libGLEW-2.0.0-6.el8.x86_64                                                    
  libICE-1.0.9-15.el8.x86_64                                                    
  libSM-1.2.3-1.el8.x86_64                                                      
  libX11-1.6.8-5.el8.x86_64                                                     
  libX11-common-1.6.8-5.el8.noarch                                              
  libX11-devel-1.6.8-5.el8.x86_64                                               
  libX11-xcb-1.6.8-5.el8.x86_64                                                 
  libXau-1.0.9-3.el8.x86_64                                                     
  libXau-devel-1.0.9-3.el8.x86_64                                               
  libXext-1.3.4-1.el8.x86_64                                                    
  libXfixes-5.0.3-7.el8.x86_64                                                  
  libXft-2.3.3-1.el8.x86_64                                                     
  libXi-1.7.10-1.el8.x86_64                                                     
  libXrender-0.9.10-7.el8.x86_64                                                
  libXtst-1.2.3-7.el8.x86_64                                                    
  libXv-1.0.11-7.el8.x86_64                                                     
  libXxf86vm-1.1.4-9.el8.x86_64                                                 
  libaec-1.0.2-3.el8.x86_64                                                     
  libaec-devel-1.0.2-3.el8.x86_64                                               
  libappstream-glib-0.7.14-3.el8.x86_64                                         
  libasyncns-0.8-14.el8.x86_64                                                  
  libcroco-0.6.12-4.el8_2.1.x86_64                                              
  libcurl-devel-7.61.1-25.el8_7.1.x86_64                                        
  libdatrie-0.2.9-7.el8.x86_64                                                  
  libdrm-2.4.111-1.el8.x86_64                                                   
  libdrm-devel-2.4.111-1.el8.x86_64                                             
  libdvdnav-5.0.3-8.el8.x86_64                                                  
  libdvdread-5.0.3-9.el8.x86_64                                                 
  libevdev-1.10.0-1.el8.x86_64                                                  
  libgfortran-8.5.0-16.el8_7.x86_64                                             
  libglvnd-1:1.3.4-1.el8.x86_64                                                 
  libglvnd-core-devel-1:1.3.4-1.el8.x86_64                                      
  libglvnd-devel-1:1.3.4-1.el8.x86_64                                           
  libglvnd-egl-1:1.3.4-1.el8.x86_64                                             
  libglvnd-gles-1:1.3.4-1.el8.x86_64                                            
  libglvnd-glx-1:1.3.4-1.el8.x86_64                                             
  libglvnd-opengl-1:1.3.4-1.el8.x86_64                                          
  libgudev-232-4.el8.x86_64                                                     
  libicu-60.3-2.el8_1.x86_64                                                    
  libinput-1.16.3-3.el8_6.x86_64                                                
  libjpeg-turbo-1.5.3-12.el8.x86_64                                             
  libmodman-2.0.1-17.el8.x86_64                                                 
  libogg-2:1.3.2-10.el8.x86_64                                                  
  libpciaccess-0.14-1.el8.x86_64                                                
  libpciaccess-devel-0.14-1.el8.x86_64                                          
  libpng-2:1.6.34-5.el8.x86_64                                                  
  libpng-devel-2:1.6.34-5.el8.x86_64                                            
  libproxy-0.4.15-5.2.el8.x86_64                                                
  libquadmath-8.5.0-16.el8_7.x86_64                                             
  libquadmath-devel-8.5.0-16.el8_7.x86_64                                       
  librsvg2-2.42.7-4.el8.x86_64                                                  
  libsndfile-1.0.28-12.el8.x86_64                                               
  libsoup-2.62.3-2.el8.x86_64                                                   
  libsrtp-1.5.4-8.el8.x86_64                                                    
  libstemmer-0-10.585svn.el8.x86_64                                             
  libthai-0.1.27-2.el8.x86_64                                                   
  libtheora-1:1.1.1-21.el8.x86_64                                               
  libuv-1:1.41.1-1.el8_4.x86_64                                                 
  libvisual-1:0.4.0-25.el8.x86_64                                               
  libvorbis-1:1.3.6-2.el8.x86_64                                                
  libwacom-1.6-3.el8.x86_64                                                     
  libwacom-data-1.6-3.el8.noarch                                                
  libwayland-client-1.19.0-1.el8.x86_64                                         
  libwayland-cursor-1.19.0-1.el8.x86_64                                         
  libwayland-egl-1.19.0-1.el8.x86_64                                            
  libwayland-server-1.19.0-1.el8.x86_64                                         
  libwebp-1.0.0-5.el8.x86_64                                                    
  libxcb-1.13.1-1.el8.x86_64                                                    
  libxcb-devel-1.13.1-1.el8.x86_64                                              
  libxkbcommon-0.9.1-1.el8.x86_64                                               
  libxkbcommon-x11-0.9.1-1.el8.x86_64                                           
  libxml2-devel-2.9.7-15.el8_7.1.x86_64                                         
  libxshmfence-1.3-2.el8.x86_64                                                 
  mesa-libEGL-22.1.5-2.el8.x86_64                                               
  mesa-libEGL-devel-22.1.5-2.el8.x86_64                                         
  mesa-libGL-22.1.5-2.el8.x86_64                                                
  mesa-libGL-devel-22.1.5-2.el8.x86_64                                          
  mesa-libGLU-9.0.0-15.el8.x86_64                                               
  mesa-libGLU-devel-9.0.0-15.el8.x86_64                                         
  mesa-libgbm-22.1.5-2.el8.x86_64                                               
  mesa-libglapi-22.1.5-2.el8.x86_64                                             
  mmtf-cpp-devel-1.1.0-1.el8.x86_64                                             
  msgpack-3.1.0-3.el8.x86_64                                                    
  msgpack-devel-3.1.0-3.el8.x86_64                                              
  mtdev-1.1.5-12.el8.x86_64                                                     
  netcdf-4.7.0-2.el8.x86_64                                                     
  netcdf-devel-4.7.0-2.el8.x86_64                                               
  openal-soft-1.18.2-7.el8.x86_64                                               
  openblas-0.3.15-4.el8.x86_64                                                  
  openblas-threads-0.3.15-4.el8.x86_64                                          
  opus-1.3-0.4.beta.el8.x86_64                                                  
  orc-0.4.28-3.el8.x86_64                                                       
  pango-1.42.4-8.el8.x86_64                                                     
  pcre2-utf16-10.32-3.el8_6.x86_64                                              
  perl-Carp-1.42-396.el8.noarch                                                 
  perl-Encode-4:2.97-3.el8.x86_64                                               
  perl-Errno-1.28-421.el8.x86_64                                                
  perl-Exporter-5.72-396.el8.noarch                                             
  perl-File-Path-2.15-2.el8.noarch                                              
  perl-File-Temp-0.230.600-1.el8.noarch                                         
  perl-Getopt-Long-1:2.50-4.el8.noarch                                          
  perl-HTTP-Tiny-0.074-1.el8.noarch                                             
  perl-IO-1.38-421.el8.x86_64                                                   
  perl-MIME-Base64-3.15-396.el8.x86_64                                          
  perl-PathTools-3.74-1.el8.x86_64                                              
  perl-Pod-Escapes-1:1.07-395.el8.noarch                                        
  perl-Pod-Perldoc-3.28-396.el8.noarch                                          
  perl-Pod-Simple-1:3.35-395.el8.noarch                                         
  perl-Pod-Usage-4:1.69-395.el8.noarch                                          
  perl-Scalar-List-Utils-3:1.49-2.el8.x86_64                                    
  perl-Socket-4:2.027-3.el8.x86_64                                              
  perl-Storable-1:3.11-3.el8.x86_64                                             
  perl-Term-ANSIColor-4.06-396.el8.noarch                                       
  perl-Term-Cap-1.17-395.el8.noarch                                             
  perl-Text-ParseWords-3.30-395.el8.noarch                                      
  perl-Text-Tabs+Wrap-2013.0523-395.el8.noarch                                  
  perl-Time-Local-1:1.280-1.el8.noarch                                          
  perl-Unicode-Normalize-1.25-396.el8.x86_64                                    
  perl-constant-1.33-396.el8.noarch                                             
  perl-interpreter-4:5.26.3-421.el8.x86_64                                      
  perl-libs-4:5.26.3-421.el8.x86_64                                             
  perl-macros-4:5.26.3-421.el8.x86_64                                           
  perl-parent-1:0.237-1.el8.noarch                                              
  perl-podlators-4.11-1.el8.noarch                                              
  perl-threads-1:2.21-2.el8.x86_64                                              
  perl-threads-shared-1.58-2.el8.x86_64                                         
  pixman-0.38.4-2.el8.x86_64                                                    
  platform-python-devel-3.6.8-48.el8_7.x86_64                                   
  platform-python-pip-9.0.3-22.el8.noarch                                       
  pulseaudio-libs-14.0-4.el8.x86_64                                             
  pulseaudio-libs-glib2-14.0-4.el8.x86_64                                       
  python-qt5-rpm-macros-5.15.0-3.el8.noarch                                     
  python3-dbus-1.2.4-15.el8.x86_64                                              
  python3-mmtf-1.1.2-4.el8.noarch                                               
  python3-msgpack-0.6.2-1.el8.x86_64                                            
  python3-numpy-1:1.14.3-10.el8.x86_64                                          
  python3-pip-9.0.3-22.el8.noarch                                               
  python3-pyqt5-sip-4.19.25-1.el8.x86_64                                        
  python3-qt5-5.15.0-3.el8.x86_64                                               
  python3-qt5-base-5.15.0-3.el8.x86_64                                          
  python3-qt5-devel-5.15.0-3.el8.x86_64                                         
  python3-rpm-generators-5-7.el8.noarch                                         
  python3-setuptools-39.2.0-6.el8.noarch                                        
  python3-simplejson-3.17.0-2.el8.x86_64                                        
  python3-sip-devel-4.19.25-1.el8.x86_64                                        
  python36-3.6.8-38.module+el8.5.0+12207+5c5719bc.x86_64                        
  python36-devel-3.6.8-38.module+el8.5.0+12207+5c5719bc.x86_64                  
  python36-rpm-macros-3.6.8-38.module+el8.5.0+12207+5c5719bc.noarch             
  qt5-qtbase-5.15.3-1.el8.x86_64                                                
  qt5-qtbase-common-5.15.3-1.el8.noarch                                         
  qt5-qtbase-devel-5.15.3-1.el8.x86_64                                          
  qt5-qtbase-gui-5.15.3-1.el8.x86_64                                            
  qt5-qtconnectivity-5.15.3-1.el8.x86_64                                        
  qt5-qtdeclarative-5.15.3-1.el8.x86_64                                         
  qt5-qtlocation-5.15.3-1.el8.x86_64                                            
  qt5-qtmultimedia-5.15.3-1.el8.x86_64                                          
  qt5-qtsensors-5.15.3-1.el8.x86_64                                             
  qt5-qtserialport-5.15.3-1.el8.x86_64                                          
  qt5-qtsvg-5.15.3-1.el8.x86_64                                                 
  qt5-qttools-common-5.15.3-2.el8.noarch                                        
  qt5-qttools-libs-designer-5.15.3-2.el8.x86_64                                 
  qt5-qttools-libs-help-5.15.3-2.el8.x86_64                                     
  qt5-qtwebchannel-5.15.3-1.el8.x86_64                                          
  qt5-qtwebsockets-5.15.3-1.el8.x86_64                                          
  qt5-qtx11extras-5.15.3-1.el8.x86_64                                           
  qt5-qtxmlpatterns-5.15.3-1.el8.x86_64                                         
  qt5-rpm-macros-5.15.3-1.el8.noarch                                            
  shared-mime-info-1.9-3.el8.x86_64                                             
  sip-4.19.25-1.el8.x86_64                                                      
  soundtouch-2.0.0-3.el8.x86_64                                                 
  valgrind-1:3.19.0-1.el8.x86_64                                                
  valgrind-devel-1:3.19.0-1.el8.x86_64                                          
  vim-filesystem-2:8.0.1763-19.el8_6.4.noarch                                   
  webrtc-audio-processing-0.3-10.el8.x86_64                                     
  xcb-util-0.4.0-10.el8.x86_64                                                  
  xcb-util-image-0.4.0-9.el8.x86_64                                             
  xcb-util-keysyms-0.4.0-7.el8.x86_64                                           
  xcb-util-renderutil-0.3.9-10.el8.x86_64                                       
  xcb-util-wm-0.4.1-12.el8.x86_64                                               
  xkeyboard-config-2.28-1.el8.noarch                                            
  xml-common-0.6.3-50.el8.noarch                                                
  xorg-x11-proto-devel-2020.1-3.el8.noarch                                      
  xz-devel-5.2.4-4.el8_6.x86_64                                                 
  zlib-devel-1.2.11-21.el8_7.x86_64                                             

Complete!
Finish: build setup for pymol-2.5.0-6.el8.src.rpm
Start: rpmbuild pymol-2.5.0-6.el8.src.rpm
warning: bogus date in %changelog: Sat Jul 08 2012 Tim Fenn <tim.fenn@gmail.com> - 1.5.0.2-3.20120218svn3982
warning: bogus date in %changelog: Thu Jul 07 2009 Tim Fenn <fenn@stanford.edu> - 1.2-5.20090709svn3827
Building target platforms: x86_64
Building for target x86_64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.maTcoK
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf pymol-open-source-2.5.0
+ /usr/bin/gzip -dc /builddir/build/SOURCES/pymol-open-source-2.5.0.tar.gz
+ /usr/bin/tar -xof -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd pymol-open-source-2.5.0
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/bin/cat /builddir/build/SOURCES/pymol-setup.py.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch
+ /usr/bin/cat /builddir/build/SOURCES/pymol-wmclass-main.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch
+ /usr/bin/cat /builddir/build/SOURCES/pymol-wmclass-pmgapp.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch
+ /usr/bin/cat /builddir/build/SOURCES/pymol-mmtf.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch
+ /usr/bin/cat /builddir/build/SOURCES/pymol-2.5.0-bug186.patch
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch
+ ln -sr modules/web modules/pymol_web
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.hmyR1H
+ umask 022
+ cd /builddir/build/BUILD
+ cd pymol-open-source-2.5.0
+ export 'CXXFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
++ /usr/bin/getconf _NPROCESSORS_ONLN
+ CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ LDFLAGS='-Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld'
+ /usr/bin/python3.6 setup.py build '--executable=/usr/bin/python3.6 -s' --use-msgpackc=c++11 --use-openmp=yes --jobs 2
running build
running build_py
creating build/lib.linux-x86_64-3.6
creating build/lib.linux-x86_64-3.6/pymol2
copying modules/pymol2/cmd2.py -> build/lib.linux-x86_64-3.6/pymol2
copying modules/pymol2/__init__.py -> build/lib.linux-x86_64-3.6/pymol2
creating build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/xwin.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/xray.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/wizarding.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/viewing.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/vfont.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/util.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/shortcut_manager.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/shortcut_dict.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/shortcut.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/setting.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/seqalign.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/selector.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/selecting.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/save_shortcut.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/rpc.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/querying.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/pymolhttpd.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/preset.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/povray.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/parsing.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/parser.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/mpeg_encode.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/moving.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/movie.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/morphing.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/monitoring.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/menu.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/locking.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/lazyio.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/keywords.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/keyboard.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/invocation.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/internal.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/importing.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/helping.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/headering.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/gui.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/fitting.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/feedingback.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/externing.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/exporting.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/experimenting.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/editor.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/editing.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/diagnosing.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/creating.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/controlling.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/constants_palette.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/constants.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/computing.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/completing.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/commanding.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/colorramping.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/colorprinting.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/cmd.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/checking.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/cgo.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/callback.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/api.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/_gui.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/__main__.py -> build/lib.linux-x86_64-3.6/pymol
copying modules/pymol/__init__.py -> build/lib.linux-x86_64-3.6/pymol
creating build/lib.linux-x86_64-3.6/pymol/wizard
copying modules/pymol/wizard/toggle.py -> build/lib.linux-x86_64-3.6/pymol/wizard
copying modules/pymol/wizard/stereodemo.py -> build/lib.linux-x86_64-3.6/pymol/wizard
copying modules/pymol/wizard/security.py -> build/lib.linux-x86_64-3.6/pymol/wizard
copying modules/pymol/wizard/sculpting.py -> build/lib.linux-x86_64-3.6/pymol/wizard
copying modules/pymol/wizard/renaming.py -> build/lib.linux-x86_64-3.6/pymol/wizard
copying modules/pymol/wizard/pseudoatom.py -> build/lib.linux-x86_64-3.6/pymol/wizard
copying modules/pymol/wizard/pair_fit.py -> build/lib.linux-x86_64-3.6/pymol/wizard
copying modules/pymol/wizard/openvr.py -> build/lib.linux-x86_64-3.6/pymol/wizard
copying modules/pymol/wizard/nucmutagenesis.py -> build/lib.linux-x86_64-3.6/pymol/wizard
copying modules/pymol/wizard/mutagenesis.py -> build/lib.linux-x86_64-3.6/pymol/wizard
copying modules/pymol/wizard/message.py -> build/lib.linux-x86_64-3.6/pymol/wizard
copying modules/pymol/wizard/measurement.py -> build/lib.linux-x86_64-3.6/pymol/wizard
copying modules/pymol/wizard/label.py -> build/lib.linux-x86_64-3.6/pymol/wizard
copying modules/pymol/wizard/filter.py -> build/lib.linux-x86_64-3.6/pymol/wizard
copying modules/pymol/wizard/dragging.py -> build/lib.linux-x86_64-3.6/pymol/wizard
copying modules/pymol/wizard/distance.py -> build/lib.linux-x86_64-3.6/pymol/wizard
copying modules/pymol/wizard/density.py -> build/lib.linux-x86_64-3.6/pymol/wizard
copying modules/pymol/wizard/demo.py -> build/lib.linux-x86_64-3.6/pymol/wizard
copying modules/pymol/wizard/command.py -> build/lib.linux-x86_64-3.6/pymol/wizard
copying modules/pymol/wizard/cleanup.py -> build/lib.linux-x86_64-3.6/pymol/wizard
copying modules/pymol/wizard/charge.py -> build/lib.linux-x86_64-3.6/pymol/wizard
copying modules/pymol/wizard/box.py -> build/lib.linux-x86_64-3.6/pymol/wizard
copying modules/pymol/wizard/benchmark.py -> build/lib.linux-x86_64-3.6/pymol/wizard
copying modules/pymol/wizard/appearance.py -> build/lib.linux-x86_64-3.6/pymol/wizard
copying modules/pymol/wizard/annotation.py -> build/lib.linux-x86_64-3.6/pymol/wizard
copying modules/pymol/wizard/__init__.py -> build/lib.linux-x86_64-3.6/pymol/wizard
creating build/lib.linux-x86_64-3.6/pymol/stereochemistry
copying modules/pymol/stereochemistry/__init__.py -> build/lib.linux-x86_64-3.6/pymol/stereochemistry
creating build/lib.linux-x86_64-3.6/pymol/plugins
copying modules/pymol/plugins/repository.py -> build/lib.linux-x86_64-3.6/pymol/plugins
copying modules/pymol/plugins/managergui_qt.py -> build/lib.linux-x86_64-3.6/pymol/plugins
copying modules/pymol/plugins/managergui.py -> build/lib.linux-x86_64-3.6/pymol/plugins
copying modules/pymol/plugins/legacysupport.py -> build/lib.linux-x86_64-3.6/pymol/plugins
copying modules/pymol/plugins/installation.py -> build/lib.linux-x86_64-3.6/pymol/plugins
copying modules/pymol/plugins/__init__.py -> build/lib.linux-x86_64-3.6/pymol/plugins
creating build/lib.linux-x86_64-3.6/pymol/Qt
copying modules/pymol/Qt/utils.py -> build/lib.linux-x86_64-3.6/pymol/Qt
copying modules/pymol/Qt/__init__.py -> build/lib.linux-x86_64-3.6/pymol/Qt
creating build/lib.linux-x86_64-3.6/pmg_tk
copying modules/pmg_tk/PMGApp.py -> build/lib.linux-x86_64-3.6/pmg_tk
copying modules/pmg_tk/volume.py -> build/lib.linux-x86_64-3.6/pmg_tk
copying modules/pmg_tk/__init__.py -> build/lib.linux-x86_64-3.6/pmg_tk
copying modules/pmg_tk/TextEditor.py -> build/lib.linux-x86_64-3.6/pmg_tk
copying modules/pmg_tk/Setting.py -> build/lib.linux-x86_64-3.6/pmg_tk
copying modules/pmg_tk/SetEditor.py -> build/lib.linux-x86_64-3.6/pmg_tk
copying modules/pmg_tk/PyMOLMapLoad.py -> build/lib.linux-x86_64-3.6/pmg_tk
copying modules/pmg_tk/Demo.py -> build/lib.linux-x86_64-3.6/pmg_tk
copying modules/pmg_tk/ColorEditor.py -> build/lib.linux-x86_64-3.6/pmg_tk
creating build/lib.linux-x86_64-3.6/pmg_tk/startup
copying modules/pmg_tk/startup/__init__.py -> build/lib.linux-x86_64-3.6/pmg_tk/startup
creating build/lib.linux-x86_64-3.6/pmg_tk/skins
copying modules/pmg_tk/skins/__init__.py -> build/lib.linux-x86_64-3.6/pmg_tk/skins
creating build/lib.linux-x86_64-3.6/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/builder.py -> build/lib.linux-x86_64-3.6/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/__init__.py -> build/lib.linux-x86_64-3.6/pmg_tk/skins/normal
copying modules/pmg_tk/skins/normal/ModalWindow.py -> build/lib.linux-x86_64-3.6/pmg_tk/skins/normal
creating build/lib.linux-x86_64-3.6/pmg_tk/skins/demo
copying modules/pmg_tk/skins/demo/__init__.py -> build/lib.linux-x86_64-3.6/pmg_tk/skins/demo
creating build/lib.linux-x86_64-3.6/pmg_qt
copying modules/pmg_qt/volume.py -> build/lib.linux-x86_64-3.6/pmg_qt
copying modules/pmg_qt/shortcut_menu_gui.py -> build/lib.linux-x86_64-3.6/pmg_qt
copying modules/pmg_qt/pymol_qt_gui.py -> build/lib.linux-x86_64-3.6/pmg_qt
copying modules/pmg_qt/pymol_gl_widget.py -> build/lib.linux-x86_64-3.6/pmg_qt
copying modules/pmg_qt/properties_dialog.py -> build/lib.linux-x86_64-3.6/pmg_qt
copying modules/pmg_qt/mimic_tk.py -> build/lib.linux-x86_64-3.6/pmg_qt
copying modules/pmg_qt/mimic_pmg_tk.py -> build/lib.linux-x86_64-3.6/pmg_qt
copying modules/pmg_qt/keymapping.py -> build/lib.linux-x86_64-3.6/pmg_qt
copying modules/pmg_qt/file_dialogs.py -> build/lib.linux-x86_64-3.6/pmg_qt
copying modules/pmg_qt/builder.py -> build/lib.linux-x86_64-3.6/pmg_qt
copying modules/pmg_qt/advanced_settings_gui.py -> build/lib.linux-x86_64-3.6/pmg_qt
copying modules/pmg_qt/__init__.py -> build/lib.linux-x86_64-3.6/pmg_qt
copying modules/pmg_qt/TextEditor.py -> build/lib.linux-x86_64-3.6/pmg_qt
creating build/lib.linux-x86_64-3.6/pmg_qt/syntax
copying modules/pmg_qt/syntax/python.py -> build/lib.linux-x86_64-3.6/pmg_qt/syntax
copying modules/pmg_qt/syntax/pmlparser.py -> build/lib.linux-x86_64-3.6/pmg_qt/syntax
copying modules/pmg_qt/syntax/pml.py -> build/lib.linux-x86_64-3.6/pmg_qt/syntax
copying modules/pmg_qt/syntax/__init__.py -> build/lib.linux-x86_64-3.6/pmg_qt/syntax
creating build/lib.linux-x86_64-3.6/pmg_qt/forms
copying modules/pmg_qt/forms/__init__.py -> build/lib.linux-x86_64-3.6/pmg_qt/forms
creating build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/xyz.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/water_residues.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/water_amber.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/solvate.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/sdf.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/protein_residues.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/protein_mmff.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/protein_amber99.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/protein_amber.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/protein.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/place.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/pkl.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/pdb.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/neighbor.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/mol2.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/mol.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/models.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/mmd.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/mass.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/map.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/mae.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/lst.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/io.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/hetatm.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/gms.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/gamess1.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/dictdb.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/cpv.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/cif.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/charge.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/cc1.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/brick.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/bonds.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/bond_mmff.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/bond_amber.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/arc.py -> build/lib.linux-x86_64-3.6/chempy
copying modules/chempy/__init__.py -> build/lib.linux-x86_64-3.6/chempy
creating build/lib.linux-x86_64-3.6/chempy/tinker
copying modules/chempy/tinker/state.py -> build/lib.linux-x86_64-3.6/chempy/tinker
copying modules/chempy/tinker/realtime.py -> build/lib.linux-x86_64-3.6/chempy/tinker
copying modules/chempy/tinker/keyword.py -> build/lib.linux-x86_64-3.6/chempy/tinker
copying modules/chempy/tinker/amber.py -> build/lib.linux-x86_64-3.6/chempy/tinker
copying modules/chempy/tinker/__init__.py -> build/lib.linux-x86_64-3.6/chempy/tinker
creating build/lib.linux-x86_64-3.6/chempy/mmtf
copying modules/chempy/mmtf/io.py -> build/lib.linux-x86_64-3.6/chempy/mmtf
copying modules/chempy/mmtf/__init__.py -> build/lib.linux-x86_64-3.6/chempy/mmtf
creating build/lib.linux-x86_64-3.6/chempy/fragments
copying modules/chempy/fragments/__init__.py -> build/lib.linux-x86_64-3.6/chempy/fragments
creating build/lib.linux-x86_64-3.6/chempy/fast
copying modules/chempy/fast/__init__.py -> build/lib.linux-x86_64-3.6/chempy/fast
creating build/lib.linux-x86_64-3.6/chempy/champ
copying modules/chempy/champ/formal_charges.py -> build/lib.linux-x86_64-3.6/chempy/champ
copying modules/chempy/champ/assign.py -> build/lib.linux-x86_64-3.6/chempy/champ
copying modules/chempy/champ/amber99.py -> build/lib.linux-x86_64-3.6/chempy/champ
copying modules/chempy/champ/__init__.py -> build/lib.linux-x86_64-3.6/chempy/champ
creating build/lib.linux-x86_64-3.6/chempy/bmin
copying modules/chempy/bmin/util.py -> build/lib.linux-x86_64-3.6/chempy/bmin
copying modules/chempy/bmin/state.py -> build/lib.linux-x86_64-3.6/chempy/bmin
copying modules/chempy/bmin/realtime.py -> build/lib.linux-x86_64-3.6/chempy/bmin
copying modules/chempy/bmin/commands.py -> build/lib.linux-x86_64-3.6/chempy/bmin
copying modules/chempy/bmin/__init__.py -> build/lib.linux-x86_64-3.6/chempy/bmin
copying modules/pmg_qt/forms/shortcut_menu.ui -> build/lib.linux-x86_64-3.6/pmg_qt/forms
copying modules/pmg_qt/forms/save_object.ui -> build/lib.linux-x86_64-3.6/pmg_qt/forms
copying modules/pmg_qt/forms/save_molecule.ui -> build/lib.linux-x86_64-3.6/pmg_qt/forms
copying modules/pmg_qt/forms/render.ui -> build/lib.linux-x86_64-3.6/pmg_qt/forms
copying modules/pmg_qt/forms/props.ui -> build/lib.linux-x86_64-3.6/pmg_qt/forms
copying modules/pmg_qt/forms/png.ui -> build/lib.linux-x86_64-3.6/pmg_qt/forms
copying modules/pmg_qt/forms/pluginmanager.ui -> build/lib.linux-x86_64-3.6/pmg_qt/forms
copying modules/pmg_qt/forms/pluginitem.ui -> build/lib.linux-x86_64-3.6/pmg_qt/forms
copying modules/pmg_qt/forms/movieexport.ui -> build/lib.linux-x86_64-3.6/pmg_qt/forms
copying modules/pmg_qt/forms/load_traj.ui -> build/lib.linux-x86_64-3.6/pmg_qt/forms
copying modules/pmg_qt/forms/load_mtz.ui -> build/lib.linux-x86_64-3.6/pmg_qt/forms
copying modules/pmg_qt/forms/load_map.ui -> build/lib.linux-x86_64-3.6/pmg_qt/forms
copying modules/pmg_qt/forms/load_mae.ui -> build/lib.linux-x86_64-3.6/pmg_qt/forms
copying modules/pmg_qt/forms/load_aln.ui -> build/lib.linux-x86_64-3.6/pmg_qt/forms
copying modules/pmg_qt/forms/help_shortcut.ui -> build/lib.linux-x86_64-3.6/pmg_qt/forms
copying modules/pmg_qt/forms/fetch.ui -> build/lib.linux-x86_64-3.6/pmg_qt/forms
copying modules/pmg_qt/forms/create_shortcut.ui -> build/lib.linux-x86_64-3.6/pmg_qt/forms
copying modules/pmg_qt/forms/colors.ui -> build/lib.linux-x86_64-3.6/pmg_qt/forms
copying modules/pmg_qt/forms/change_confirm.ui -> build/lib.linux-x86_64-3.6/pmg_qt/forms
copying modules/pmg_qt/forms/askpartial.ui -> build/lib.linux-x86_64-3.6/pmg_qt/forms
running build_ext
building 'pymol._cmd' extension
creating build/temp.linux-x86_64-3.6
creating build/temp.linux-x86_64-3.6/build
creating build/temp.linux-x86_64-3.6/build/generated
creating build/temp.linux-x86_64-3.6/contrib
creating build/temp.linux-x86_64-3.6/contrib/mmtf-c
creating build/temp.linux-x86_64-3.6/contrib/uiuc
creating build/temp.linux-x86_64-3.6/contrib/uiuc/plugins
creating build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin
creating build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src
creating build/temp.linux-x86_64-3.6/layer0
creating build/temp.linux-x86_64-3.6/layer1
creating build/temp.linux-x86_64-3.6/layer2
creating build/temp.linux-x86_64-3.6/layer3
creating build/temp.linux-x86_64-3.6/layer4
creating build/temp.linux-x86_64-3.6/layer5
creating build/temp.linux-x86_64-3.6/ov
creating build/temp.linux-x86_64-3.6/ov/src
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD build/generated/ShaderText.cpp -o build/temp.linux-x86_64-3.6/build/generated/ShaderText.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/mmtf-c/mmtf_parser.cpp -o build/temp.linux-x86_64-3.6/contrib/mmtf-c/mmtf_parser.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:89:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘swap8_unaligned’ defined but not used [-Wunused-function]
 static void swap8_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘swap4_unaligned’ defined but not used [-Wunused-function]
 static void swap4_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
 static void swap2_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:79:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
 static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
                   ^~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/mmtf-c/mmtf_parser.cpp: In function ‘bool MMTF_unpack_from_file(const char*, MMTF_container*)’:
contrib/mmtf-c/mmtf_parser.cpp:1075:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fread(buffer, fileLen, 1, file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function ‘int {anonymous}::write_structure(void*, int, const molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1904:9: warning: unused variable ‘last_ctnumber’ [-Wunused-variable]
     int last_ctnumber = -1;
         ^~~~~~~~~~~~~
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerInitAll’:
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:271:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 if(ok) ok = ok && (molfile_xyzplugin_init() == VMDPLUGIN_SUCCESS);
 ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:273:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
        if(ok) {
        ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c: In function ‘PlugIOManagerFreeAll’:
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:411:1: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 if(ok) ok = ok && (molfile_xyzplugin_fini() == VMDPLUGIN_SUCCESS);
 ^~
contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c:413:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
        return ok;
        ^~~~~~
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘DEN_read_volumetric_data’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:970:5: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
     fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:971:5: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
     fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘POT_read_volumetric_data’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1113:5: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
     fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1114:5: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
     fread(recordmarker, 1, data->hdr->bintype.recordmarker, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘abinit_header’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:1511:3: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
   fread(skip, 1, 8, fp);
   ^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c: In function ‘GEO_read_next_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:619:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
     fscanf(data->file, "%*s %f %f %f", &x, &y, &z);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.c:70:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
 static int get_pte_idx_from_string(const char *label) {
            ^~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:42:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
 static void whereami(FILE *file) {
             ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
 static void thisline(FILE *file) {
             ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: ‘fpexpftoc’ defined but not used [-Wunused-function]
 static int fpexpftoc(char *ftocstr) {
            ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: ‘have_keyline’ defined but not used [-Wunused-function]
 static int have_keyline(FILE *file, const char *keystring1,
            ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:962:12: warning: ‘goto_keyline’ defined but not used [-Wunused-function]
 static int goto_keyline(FILE *file, ...) {
            ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: ‘strtoupper’ defined but not used [-Wunused-function]
 static char *strtoupper(char *s) {
              ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: ‘iswhiteline’ defined but not used [-Wunused-function]
 static int iswhiteline(char *s) {
            ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:846:13: warning: ‘eatwhitelines’ defined but not used [-Wunused-function]
 static void eatwhitelines(FILE *file) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:13: warning: ‘eatline’ defined but not used [-Wunused-function]
 static void eatline(FILE * fd, int n)
             ^~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: ‘symmetry_expand’ defined but not used [-Wunused-function]
 static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
            ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
 static void print_matrix4(const float mat[16]) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:540:13: warning: ‘angular_momentum_expon’ defined but not used [-Wunused-function]
 static void angular_momentum_expon(int  *ang_mom_expon,
             ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: ‘del_wavefunction’ defined but not used [-Wunused-function]
 static void del_wavefunction(qm_timestep_t *ts) {
             ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: ‘replace_wavefunction’ defined but not used [-Wunused-function]
 static void replace_wavefunction(qm_timestep_t *ts, int n) {
             ^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:471:27: warning: ‘add_wavefunction’ defined but not used [-Wunused-function]
 static qm_wavefunction_t* add_wavefunction(qm_timestep_t *ts) {
                           ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:437:18: warning: ‘init_qmdata’ defined but not used [-Wunused-function]
 static qmdata_t* init_qmdata() {
                  ^~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, bgf->file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, bgf->file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, bgf->file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(line, LINESIZE, bgf->file);
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(nextline, LINESIZE, bgf->file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
         fgets(line, LINESIZE, bgf->file);
         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘int read_bgf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, bgf->file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, bgf->file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function ‘void* open_bgf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, fd);
     ~~~~~^~~~~~~~~~~~~~~~~~~~
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function ‘open_binpos_read’:
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:3: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
   fread(magicchar,sizeof(char),4,fd);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:3: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
   fread(&igarb,sizeof(int),1,fd);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘int read_brix_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
         fread(brick, sizeof(char), 512, fd);
         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function ‘void* open_brix_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(fd, "%3s", keyWord);
   ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z);
   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z);
   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z);
   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:109:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(fd, " %s %f %f %f %f %f %f", keyWord,
   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
          &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma);
          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(fd, " %s %f", keyWord, &prod);
   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(fd, " %s %f", keyWord, &plus);
   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(fd, " %s %f", keyWord, &sigma);
   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(line, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(line, LINESIZE, data->file);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_structure’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(line, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(line, LINESIZE, data->file);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘open_car_read’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(line, LINESIZE, fd);
   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(line, LINESIZE, fd);
   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, fd);
     ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(line, LINESIZE, fd);
   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(line, LINESIZE, fd);
   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, fd);
     ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, fd);
     ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(line, LINESIZE, fd);
   ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(line, LINESIZE, fd);
       ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, fd);
     ^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function ‘read_car_structure’:
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:29: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=]
     sprintf(atom->resname, "%d", resid);
                             ^~
contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:127:28: note: directive argument in the range [-2147483648, 9999999]
     sprintf(atom->resname, "%d", resid);
                            ^~~~
In file included from /usr/include/stdio.h:873,
                 from contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:85:
/usr/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 12 bytes into a destination of size 8
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __glibc_objsize (__s), __fmt,
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function ‘int read_ccp4_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:495:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
         if ( fread(rowdata, sizeof(char), extent[0], fd) != extent[0] ) {
              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:525:67: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
         if ( fread(rowdata, sizeof(unsigned char), extent[0], fd) != extent[0] ) {
              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:556:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
         if (fread(rowdata, sizeof(float), extent[0], fd) != extent[0] ) {
             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:588:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
         if (fread(rowdata, sizeof(short), extent[0], fd) != extent[0] ) {
             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:623:67: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
         if (fread(rowdata, sizeof(unsigned short), extent[0], fd) != extent[0] ) {
             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:655:60: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
         if ( fread(rowdata, sizeof(uchar3), extent[0], fd) != extent[0] ) {
              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function ‘void* open_ccp4_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:304:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(symData, 81, fd);
       ~~~~~^~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:42:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap8_aligned(void *v, long ndata) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap8_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap4_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap2_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp: In function ‘void* open_ccp4_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:287:42: warning: ‘dataOffset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
     } else if ((dataOffset > CCP4HDSIZE) && (dataOffset < (1024*1024))) {
                ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function ‘void* open_cube_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:175:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(readbuf, 1023, cube->fd);    // go on to next line
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(readbuf, 1023, cube->fd); // skip second header line
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:326:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(readbuf, 1023, cube->fd);
       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:337:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(readbuf, 1023, cube->fd);
       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:339:11: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
     fscanf(cube->fd, "%d", &cube->nsets);
     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:344:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
       fscanf(cube->fd, "%d", &orb);
       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:349:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(readbuf, 1023, cube->fd);  // gobble up rest of line
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:107:13: warning: ‘void cube_buildrotmat(cube_t*, float*, float*, float*)’ defined but not used [-Wunused-function]
 static void cube_buildrotmat(cube_t *cube, float *o, float *a, float *b)
             ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:42:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘int get_pte_idx_from_string(const char*)’ defined but not used [-Wunused-function]
 static int get_pte_idx_from_string(const char *label) {
            ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘int get_pte_idx(const char*)’ defined but not used [-Wunused-function]
 static int get_pte_idx(const char *label)
            ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘int read_mdf_bonds(void*, int*, int**, int**, float**, int**, int*, char***)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:278:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, mdf->file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:297:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(line, LINESIZE, mdf->file);
       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:319:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, mdf->file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:357:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(line, LINESIZE, mdf->file);
       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘int read_mdf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:223:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, mdf->file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:241:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(line, LINESIZE, mdf->file);
       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp: In function ‘void* open_mdf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:164:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, fd);
     ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:176:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, fd);
     ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:183:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(line, LINESIZE, fd);
       ~~~~~^~~~~~~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:275:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, mol2->file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:289:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, mol2->file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:199:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, mol2->file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:209:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, mol2->file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘int read_mol2(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:127:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, mol2->file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:138:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, mol2->file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp: In function ‘void* open_mol2_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:74:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, fd);
     ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:81:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(line, LINESIZE, fd);  // Read and ignore the mol_name
   ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:82:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(line, LINESIZE, fd);  // Read the molecule info
   ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:91:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(line, LINESIZE, fd);  // Read and ignore the mol_type
   ~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp:92:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(line, LINESIZE, fd);  // Read the charge_type
   ~~~~~^~~~~~~~~~~~~~~~~~~~
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c: In function ‘read_dcdstep’:
contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:546:16: warning: variable ‘readlen’ set but not used [-Wunused-but-set-variable]
     fio_size_t readlen; /* number of bytes actually read            */
                ^~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:60:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
 static void swap2_aligned(void *v, long ndata) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
 static void swap2_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:609:12: warning: ‘fio_write_str’ defined but not used [-Wunused-function]
 static int fio_write_str(fio_fd fd, const char *str) {
            ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:605:12: warning: ‘fio_read_int32’ defined but not used [-Wunused-function]
 static int fio_read_int32(fio_fd fd, int *i) {
            ^~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fastio.h:459:19: warning: ‘fio_readv’ defined but not used [-Wunused-function]
 static fio_size_t fio_readv(fio_fd fd, const fio_iovec * iov, int iovcnt) {
                   ^~~~~~~~~
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘read_molden_rundata’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:596:25: warning: variable ‘hessian_data’ set but not used [-Wunused-but-set-variable]
   molfile_qm_hessian_t *hessian_data;
                         ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘count_orbitals’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1165:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(data->file, " Ene= %f\n", &orbenergy);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1166:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(data->file, " Spin= %s\n", spin);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:1167:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(data->file, " Occup= %f\n", &occu);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘eatline’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(readbuf, 1024, fd);
     ^~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function ‘open_molden_read’:
contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:224:11: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
           fscanf(data->file, "%d", &natm);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:49:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
 static void whereami(FILE *file) {
             ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
 static void thisline(FILE *file) {
             ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1006:12: warning: ‘have_keyline’ defined but not used [-Wunused-function]
 static int have_keyline(FILE *file, const char *keystring1,
            ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:711:12: warning: ‘symmetry_expand’ defined but not used [-Wunused-function]
 static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
            ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
 static void print_matrix4(const float mat[16]) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:507:13: warning: ‘del_wavefunction’ defined but not used [-Wunused-function]
 static void del_wavefunction(qm_timestep_t *ts) {
             ^~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:490:13: warning: ‘replace_wavefunction’ defined but not used [-Wunused-function]
 static void replace_wavefunction(qm_timestep_t *ts, int n) {
             ^~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:48:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
 static int get_pte_idx(const char *label)
            ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: ‘get_pte_vdw_radius’ defined but not used [-Wunused-function]
 static float get_pte_vdw_radius(const int idx)
              ^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: ‘get_pte_mass’ defined but not used [-Wunused-function]
 static float get_pte_mass(const int idx)
              ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘get_pte_label’ defined but not used [-Wunused-function]
 static const char *get_pte_label(const int idx)
                    ^~~~~~~~~~~~~
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_structure’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:292:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   if (NULL == fgets(fbuffer, 1024, data->file))
   ^~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:295:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
     if (NULL == fgets(fbuffer, 1024, data->file))
     ^~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_config_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:669:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(fbuffer, 1024, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function ‘read_dlpoly_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:554:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(fbuffer, 1024, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘int read_dsn6_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
         fread(brick, sizeof(char), 512, fd);
         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function ‘void* open_dsn6_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fread(fileHeader, sizeof(short), 19, fd);
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:63:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap8_aligned(void *v, long ndata) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: ‘void swap4_aligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap4_aligned(void *v, long ndata) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap8_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap4_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:91:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, 80, infile);
     ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:116:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, 80, infile);
     ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:132:9: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
    fgets(line, 80, infile);
    ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:149:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
      fgets(line, 80, infile);
      ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:155:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
               fgets(line, 80, infile);
               ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:161:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
      fgets(line, 80, infile); //one more read to keep us in sync
      ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:170:27: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
                      fgets(line, 80, infile);
                      ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:217:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
          fgets(line, 80, infile);
          ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:237:23: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
                  fgets(line, 80, infile);
                  ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.cpp:256:15: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
          fgets(line, 80, infile);
          ~~~~~^~~~~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘read_next_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:103:10: warning: variable ‘numatoms’ set but not used [-Wunused-but-set-variable]
   int i, numatoms;
          ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function ‘open_namdbin_read’:
contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:78:3: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result]
   fread(&filen, sizeof(namdbin_int32), 1, fd);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/offplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:71:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap8_aligned(void *v, long ndata) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: ‘void swap4_aligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap4_aligned(void *v, long ndata) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap2_aligned(void *v, long ndata) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap2_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:70:
contrib/uiuc/plugins/molfile_plugin/src/vmddir.h:145:12: warning: ‘int vmd_file_is_executable(const char*)’ defined but not used [-Wunused-function]
 static int vmd_file_is_executable(const char * filename) {
            ^~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp: In function ‘int read_parm7_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:78:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
         fgets(buf, 85, file);
         ~~~~~^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp:25:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_atoms(const char*, int, molfile_atom_t*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:204:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(buf, 85, file);
       ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_atype(const char*, int, molfile_atom_t*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:257:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(buf, 85, file);
       ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_resnames(const char*, int, char*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:275:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(buf, 85, file);
       ~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int parse_parm7_respointers(const char*, int, molfile_atom_t*, int, const char*, FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:289:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(file, " %d", &cur);
   ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘parmstruct* read_parm7_header(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:368:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(sdum, 512, file);
   ~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:371:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(file, "%s\n", sdum); // "%FLAG"
   ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:378:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(file, "%s\n", sdum); // "TITLE" or "CTITLE"
   ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:385:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(file, "%s\n", sdum); // "FORMAT (20a4)"
   ~~~~~~^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:399:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(prm->title, sizeof(prm->title), file);
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:427:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(sdum, sizeof(sdum), file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:439:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(file,parm7,
   ~~~~~~^~~~~~~~~~~~
          &prm->Natom,  &prm->Ntypes, &prm->Nbonh, &prm->Nbona,
          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
          &prm->Ntheth, &prm->Ntheta, &prm->Nphih, &prm->Nphia,
          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
          &prm->Jparm,  &prm->Nparm);
          ~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:443:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(file, parm7,
   ~~~~~~^~~~~~~~~~~~~
          &prm->Nnb,   &prm->Nres,   &prm->Mbona,  &prm->Mtheta,
          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
          &prm->Mphia, &prm->Numbnd, &prm->Numang, &prm->Mptra,
          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
          &prm->Natyp, &prm->Nphb);
          ~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:447:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(file, parm7,  &prm->Ifpert, &prm->Nbper,  &prm->Ngper,
   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
          &prm->Ndper, &prm->Mbper,  &prm->Mgper, &prm->Mdper,
          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
          &prm->IfBox, &prm->Nmxrs,  &prm->IfCap);
          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:451:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(file,"%8d",&prm->Numextra); //BB
   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h: In function ‘int read_parm7_flag(FILE*, const char*, const char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:79:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(file, "%s\n", buf);
   ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:87:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(file, "%s\n", buf);
   ~~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h:97:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(file, "%s\n", buf);
   ~~~~~~^~~~~~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp:24:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h: In member function ‘int {anonymous}::ReadPARM::readparm(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:435:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
           fscanf(file, " " DBLFMT, &prm->Charges[i]);
           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:444:10: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
    fscanf(file, " " DBLFMT, &prm->Masses[i]);
    ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:510:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
           fscanf(file, " " DBLFMT, &prm->Rk[i]);
           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:517:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
           fscanf(file, " " DBLFMT, &prm->Req[i]);
           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:524:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
           fscanf(file, " " DBLFMT, &prm->Tk[i]);
           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:531:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
           fscanf(file, " " DBLFMT, &prm->Teq[i]);
           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:538:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
           fscanf(file, " " DBLFMT, &prm->Pk[i]);
           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:545:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
           fscanf(file, " " DBLFMT, &prm->Pn[i]);
           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:552:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
           fscanf(file, " " DBLFMT, &prm->Phase[i]);
           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:559:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
           fscanf(file, " " DBLFMT, &prm->Solty[i]);
           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:567:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
           fscanf(file, " " DBLFMT, &prm->Cn1[i]);
           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:575:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
           fscanf(file, " " DBLFMT, &prm->Cn2[i]);
           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:756:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
           fscanf(file, " " DBLFMT, &prm->HB12[i]);
           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:763:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
           fscanf(file, " " DBLFMT, &prm->HB6[i]);
           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:771:17: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
           fscanf(file, " " DBLFMT, &H[i]);
           ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:853:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(file, " " DBLFMT " " DBLFMT " " DBLFMT,
   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     &prm->Box[0], &prm->Box[1], &prm->Box[2]);
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h:867:9: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
   fscanf(file, " %d " DBLFMT " " DBLFMT " " DBLFMT " " DBLFMT,
   ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     &prm->Natcap, &prm->Cutcap,
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~
     &prm->Xcap, &prm->Ycap, &prm->Zcap);
     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp:53:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap2_aligned(void *v, long ndata) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap8_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap4_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap2_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:32:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
 static int get_pte_idx(const char *label)
            ^~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int getUniqueResID(char*, int)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:443:7: warning: unused variable ‘i’ [-Wunused-variable]
   int i, uid;
       ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘int parseStructureFaster(molfile_atom_t*, int*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:484:47: warning: unused variable ‘j’ [-Wunused-variable]
   int i, count, atomdata, pos, idx, xyzcount, j;
                                               ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:503:8: warning: unused variable ‘oldChain’ [-Wunused-variable]
   char oldChain[8];
        ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readAngleBonds(molfile_atom_t*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:803:7: warning: unused variable ‘bondTable’ [-Wunused-variable]
   int bondTable[32];
       ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:807:15: warning: unused variable ‘j’ [-Wunused-variable]
   int i, pos, j, k;
               ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:811:8: warning: unused variable ‘modelNum’ [-Wunused-variable]
   char modelNum[8];
        ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:822:20: warning: unused variable ‘atom’ [-Wunused-variable]
   molfile_atom_t * atom;
                    ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:884:7: warning: unused variable ‘test’ [-Wunused-variable]
   int test = parser->nbonds + bnum;
       ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘bool readRMSDBonds(molfile_atom_t*, pdbxParser*)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:984:7: warning: unused variable ‘bondTable’ [-Wunused-variable]
   int bondTable[32];
       ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:988:15: warning: unused variable ‘j’ [-Wunused-variable]
   int i, pos, j, k;
               ^
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:991:8: warning: unused variable ‘modelNum’ [-Wunused-variable]
   char modelNum[8];
        ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1002:20: warning: unused variable ‘atom’ [-Wunused-variable]
   molfile_atom_t * atom;
                    ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: In function ‘void* open_file_write(const char*, const char*, int)’:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:1409:9: warning: unused variable ‘fd’ [-Wunused-variable]
   FILE* fd;
         ^~
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:313:14: warning: ‘float stringToFloat(char*)’ defined but not used [-Wunused-function]
 static float stringToFloat(char * str) {
              ^~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.cpp:25:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘int get_pte_idx(const char*)’ defined but not used [-Wunused-function]
 static int get_pte_idx(const char *label)
            ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘const char* get_pte_label(int)’ defined but not used [-Wunused-function]
 static const char *get_pte_label(const int idx)
                    ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘void DDmkdir(const string&, mode_t, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:15: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
  sprintf(sub, "%03x/", i);
               ^~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:714:15: note: directive argument in the range [0, 2147483647]
In file included from /usr/include/stdio.h:873,
                 from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
                 from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
/usr/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10 bytes into a destination of size 6
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __glibc_objsize (__s), __fmt,
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~           
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:22: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size 6 [-Wformat-overflow=]
      sprintf(subsub, "%03x", j);
                      ^~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:722:22: note: directive argument in the range [0, 2147483647]
In file included from /usr/include/stdio.h:873,
                 from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
                 from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
/usr/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 4 and 9 bytes into a destination of size 6
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __glibc_objsize (__s), __fmt,
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~           
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In function ‘std::__cxx11::string framefile(const string&, size_t, size_t, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:675:22: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
      sprintf(answer, "%03x/", d1);
                      ^~~~~~~
In file included from /usr/include/stdio.h:873,
                 from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
                 from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
/usr/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 5 and 10 bytes into a destination of size 9
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __glibc_objsize (__s), __fmt,
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~           
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:22: warning: ‘%03x’ directive writing between 3 and 8 bytes into a region of size between 0 and 5 [-Wformat-overflow=]
      sprintf(answer, "%03x/%03x/", d1, d2);
                      ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:673:22: note: directive argument in the range [0, 2147483646]
In file included from /usr/include/stdio.h:873,
                 from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.hxx:56,
                 from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:47:
/usr/include/bits/stdio2.h:36:34: note: ‘__builtin___sprintf_chk’ output between 9 and 19 bytes into a destination of size 9
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __glibc_objsize (__s), __fmt,
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~           
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function ‘int read_plt_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:143:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   if ( fread(datablock, sizeof(float), ndata, fd) != ndata ) {
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function ‘void* open_plt_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fread(intHeader, sizeof(int), 5, fd);
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fread(floatHeader, sizeof(float), 6, fd);
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:42:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap8_aligned(void *v, long ndata) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap2_aligned(void *v, long ndata) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap8_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap4_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap2_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void put_element_ply(PlyFile*, void*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:459:7: warning: unused variable ‘i’ [-Wunused-variable]
   int i,j,k;
       ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void ascii_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1407:7: warning: unused variable ‘i’ [-Wunused-variable]
   int i,j,k;
       ^
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void binary_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1541:7: warning: unused variable ‘i’ [-Wunused-variable]
   int i,j,k;
       ^
contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:107:17: warning: variable ‘vert_other’ set but not used [-Wunused-but-set-variable]
   PlyOtherProp *vert_other=NULL;
                 ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:108:17: warning: variable ‘face_other’ set but not used [-Wunused-but-set-variable]
   PlyOtherProp *face_other=NULL;
                 ^~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void binary_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1629:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fread (&len, sizeof(int), 1, fp);
       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1631:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fread (str, len, 1, fp);
       ~~~~~~^~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void get_binary_item(FILE*, int, int*, unsigned int*, double*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2057:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fread (ptr, 1, 1, fp);
       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2063:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fread (ptr, 1, 1, fp);
       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2069:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fread (ptr, 2, 1, fp);
       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2075:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fread (ptr, 2, 1, fp);
       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2081:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fread (ptr, 4, 1, fp);
       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2087:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fread (ptr, 4, 1, fp);
       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2093:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fread (ptr, 4, 1, fp);
       ~~~~~~^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:2099:13: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fread (ptr, 8, 1, fp);
       ~~~~~~^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:27:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap8_aligned(void *v, long ndata) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: ‘void swap4_aligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap4_aligned(void *v, long ndata) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap2_aligned(void *v, long ndata) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap8_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap4_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap2_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/plyplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void ascii_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1497:18: warning: ‘item’ may be used uninitialized in this function [-Wmaybe-uninitialized]
             item += item_size;
             ~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1477:19: warning: ‘other_data’ may be used uninitialized in this function [-Wmaybe-uninitialized]
       store_array = (char **) (elem_data + prop->offset);
       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h: In function ‘void binary_get_element(PlyFile*, char*)’:
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1620:18: warning: ‘item’ may be used uninitialized in this function [-Wmaybe-uninitialized]
             item += item_size;
             ~~~~~^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/ply_c.h:1601:19: warning: ‘other_data’ may be used uninitialized in this function [-Wmaybe-uninitialized]
       store_array = (char **) (elem_data + prop->offset);
       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c: In function ‘get_atom_radius’:
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:16: warning: variable ‘type’ set but not used [-Wunused-but-set-variable]
   char *name, *type;
                ^~~~
contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c:166:9: warning: variable ‘name’ set but not used [-Wunused-but-set-variable]
   char *name, *type;
         ^~~~
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:103:12: warning: ‘fortread_4’ defined but not used [-Wunused-function]
 static int fortread_4(void *dest, int n, int swap, FILE *fd) {
            ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: ‘fort_get_endian_reclen’ defined but not used [-Wunused-function]
 static int fort_get_endian_reclen(int reclen, int word0, int word1,
            ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: ‘fort_eat_recmark’ defined but not used [-Wunused-function]
 static int fort_eat_recmark(FILE *ifp, int recmarklen) {
            ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/fortread.h:28,
                 from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:30:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘swap8_aligned’ defined but not used [-Wunused-function]
 static void swap8_aligned(void *v, long ndata) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘swap2_aligned’ defined but not used [-Wunused-function]
 static void swap2_aligned(void *v, long ndata) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘swap8_unaligned’ defined but not used [-Wunused-function]
 static void swap8_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘swap4_unaligned’ defined but not used [-Wunused-function]
 static void swap4_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘swap2_unaligned’ defined but not used [-Wunused-function]
 static void swap2_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function ‘open_rst_read’:
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:48:11: warning: variable ‘timesteprst’ set but not used [-Wunused-but-set-variable]
   double  timesteprst;
           ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:67:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(title, 82, fd);
   ^~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:70:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(line, 82, fd);
   ^~~~~~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘int read_edm_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:240:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(readbuf, 13, edm->fd);
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function ‘void eatline(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(readbuf, 1024, fd);    // go on to next line
   ~~~~~^~~~~~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp: In function ‘int read_spider_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:286:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fread(datablock, total * sizeof(float), 1, fd);
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:36:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap8_aligned(void *v, long ndata) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap2_aligned(void *v, long ndata) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap8_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap4_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap2_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function ‘void* open_fs4_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fread(&dataBegin, sizeof(int), 1, fd);
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:48:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:133:13: warning: ‘void strnwscpy(char*, const char*, int)’ defined but not used [-Wunused-function]
 static void strnwscpy(char *target, const char *source, const int len) {
             ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: ‘int fort_get_endian_reclen(int, int, int, int*, int*)’ defined but not used [-Wunused-function]
 static int fort_get_endian_reclen(int reclen, int word0, int word1,
            ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: ‘int fort_eat_recmark(FILE*, int)’ defined but not used [-Wunused-function]
 static int fort_eat_recmark(FILE *ifp, int recmarklen) {
            ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:47:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap8_aligned(void *v, long ndata) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap2_aligned(void *v, long ndata) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap8_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap4_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap2_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, 80, infile);
     ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, 80, infile);
     ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(line, 80, infile);
       ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
         fgets(line, 80, infile);
         ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(line, 80, infile);
       ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(line, 80, infile);
       ~~~~~^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(line, 80, infile);
       ~~~~~^~~~~~~~~~~~~~~~~~
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘have_gamess’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1106:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
   char word[3][BUFSIZ];
        ^~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_basis_stats’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:2264:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
   char word[7][BUFSIZ];
        ^~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_wavefunction’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:3573:8: warning: variable ‘word’ set but not used [-Wunused-but-set-variable]
   char word[6][BUFSIZ];
        ^~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function ‘eatline’:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:840:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(readbuf, 1024, fd);
     ^~~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
At top level:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1002:13: warning: ‘print_input_data’ defined but not used [-Wunused-function]
 static void print_input_data(qmdata_t *data) {
             ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:162:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: ‘get_pte_idx’ defined but not used [-Wunused-function]
 static int get_pte_idx(const char *label)
            ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: ‘get_pte_vdw_radius’ defined but not used [-Wunused-function]
 static float get_pte_vdw_radius(const int idx)
              ^~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: ‘get_pte_mass’ defined but not used [-Wunused-function]
 static float get_pte_mass(const int idx)
              ^~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: ‘get_pte_label’ defined but not used [-Wunused-function]
 static const char *get_pte_label(const int idx)
                    ^~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1097:13: warning: ‘whereami’ defined but not used [-Wunused-function]
 static void whereami(FILE *file) {
             ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1077:13: warning: ‘thisline’ defined but not used [-Wunused-function]
 static void thisline(FILE *file) {
             ^~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1028:12: warning: ‘fpexpftoc’ defined but not used [-Wunused-function]
 static int fpexpftoc(char *ftocstr) {
            ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:901:14: warning: ‘strtoupper’ defined but not used [-Wunused-function]
 static char *strtoupper(char *s) {
              ^~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:895:12: warning: ‘iswhiteline’ defined but not used [-Wunused-function]
 static int iswhiteline(char *s) {
            ^~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:585:13: warning: ‘print_matrix4’ defined but not used [-Wunused-function]
 static void print_matrix4(const float mat[16]) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘void* open_uhbd_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:90:22: warning: variable ‘o’ set but not used [-Wunused-but-set-variable]
   float orig[3], ra, o[3], s[3]; //xdelta[3], ydelta[3], zdelta[3];
                      ^
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:90:28: warning: variable ‘s’ set but not used [-Wunused-but-set-variable]
   float orig[3], ra, o[3], s[3]; //xdelta[3], ydelta[3], zdelta[3];
                            ^
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘int read_uhbd_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:254:66: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
       if (fread(datablock + z*xysize, sizeof(float), xysize, fd) != xysize) {
           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function ‘void* open_uhbd_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fread(&headersize, sizeof(int), 1, fd);
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:47:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap8_aligned(void *v, long ndata) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap2_aligned(void *v, long ndata) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap8_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap2_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘read_vasp5xdatcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:224:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(lineptr, LINESIZE, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘read_vasp5xdatcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:174:27: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file);
                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:180:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(lineptr, LINESIZE, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:189:26: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
  for (i = 0; i < 3; ++i) fgets(lineptr, LINESIZE, data->file);
                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:194:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
    fgets(lineptr, LINESIZE, data->file);
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:204:26: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
  for (i = 0; i < 8; ++i) fgets(lineptr, LINESIZE, data->file);
                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c: In function ‘open_vasp5xdatcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:69:27: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file);
                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:72:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:77:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.c:40:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
 static int get_pte_idx_from_string(const char *label) {
            ^~~~~~~~~~~~~~~~~~~~~~~
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘read_vaspchgcar_data’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:237:60: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file);
                                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:282:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(lineptr, LINESIZE, data->file);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘read_vaspchgcar_metadata’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:150:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function ‘open_vaspchgcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:71:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:75:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:81:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(lineptr, LINESIZE, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:92:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:103:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(lineptr, LINESIZE, data->file);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:131:44: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file);
                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:41:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: ‘vasp_timestep_unitcell’ defined but not used [-Wunused-function]
 static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
             ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c: In function ‘get_basis_options’:
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1398:41: warning: ‘%s’ directive writing up to 8191 bytes into a region of size 8190 [-Wformat-overflow=]
       sprintf(data->basis_string, "%d-%s%sG%s",
                                         ^~
               ngauss, (data->gbasis+1), diffuse,
                                         ~~~~~~~
In file included from /usr/include/stdio.h:873,
                 from contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:27,
                 from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
/usr/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 4 or more bytes (assuming 16386) into a destination of size 8192
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __glibc_objsize (__s), __fmt,
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:1394:43: warning: ‘%s’ directive writing up to 8191 bytes into a region of size between 8176 and 8186 [-Wformat-overflow=]
       sprintf(data->basis_string, "STO-%dG%s%s",
                                           ^~
               ngauss, diffuse, polarization);
                       ~~~~~~~              
In file included from /usr/include/stdio.h:873,
                 from contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:27,
                 from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
/usr/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 7 and 16399 bytes into a destination of size 8192
   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __glibc_objsize (__s), __fmt,
       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       __va_arg_pack ());
       ~~~~~~~~~~~~~~~~~
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘read_vaspoutcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:239:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(lineptr, LINESIZE, data->file);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:242:2: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
  fgets(lineptr, LINESIZE, data->file);
  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘read_vaspoutcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:204:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
         fgets(lineptr, LINESIZE, data->file);
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function ‘open_vaspoutcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:87:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:40:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
 static int get_pte_idx_from_string(const char *label) {
            ^~~~~~~~~~~~~~~~~~~~~~~
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘read_vaspparchg_data’:
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:238:60: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file);
                                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘read_vaspparchg_metadata’:
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:150:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function ‘open_vaspparchg_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:71:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:75:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:81:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(lineptr, LINESIZE, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:92:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:103:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(lineptr, LINESIZE, data->file);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:131:44: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file);
                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:41:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: ‘vasp_timestep_unitcell’ defined but not used [-Wunused-function]
 static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
             ^~~~~~~~~~~~~~~~~~~~~~
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘write_vaspposcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:360:40: warning: argument to ‘sizeof’ in ‘strncpy’ call is the same expression as the source; did you mean to use the size of the destination? [-Wsizeof-pointer-memaccess]
     strncpy(tmptype, atom->type, sizeof(atom->type));
                                        ^
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘read_vaspposcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(lineptr, LINESIZE, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:43: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file);
                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:35: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file);
                                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(lineptr, LINESIZE, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘read_vaspposcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:42: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
  for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file);
                                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:34: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
  if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file);
                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:4: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
    fgets(lineptr, LINESIZE, data->file);
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function ‘open_vaspposcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:69:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:73:27: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file);
                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(lineptr, LINESIZE, data->file);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:40:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
 static int get_pte_idx_from_string(const char *label) {
            ^~~~~~~~~~~~~~~~~~~~~~~
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘read_vaspxdatcar_timestep’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:283:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, data->file);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘read_vaspxdatcar_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:228:27: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   for (i = 0; i < 4; ++i) fgets(lineptr, LINESIZE, data->file);
                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:233:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(lineptr, LINESIZE, data->file);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:237:32: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
       for (i = 0; i < 2; ++i)  fgets(lineptr, LINESIZE, data->file);
                                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:252:44: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   for (i = 0; i < 10 - data->version; ++i) fgets(lineptr, LINESIZE, data->file);
                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function ‘open_vaspxdatcar_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:89:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, poscar);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:92:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, poscar);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:97:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(lineptr, LINESIZE, poscar);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:111:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(lineptr, LINESIZE, poscar);
   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:121:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(lineptr, LINESIZE, poscar);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:40:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
 static int get_pte_idx_from_string(const char *label) {
            ^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘void line3(FILE*, GRASSP*)’:
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fread(line3, 1, 80, infile);
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function ‘int read_rawgraphics(void*, int*, const molfile_graphics_t**)’:
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
 #define TRASH fread(trash, 4, 1, infile)
               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:3: note: in expansion of macro ‘TRASH’
   TRASH;
   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fread(line, 1, 80, infile);
   ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
 #define TRASH fread(trash, 4, 1, infile)
               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:3: note: in expansion of macro ‘TRASH’
   TRASH;
   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
 #define TRASH fread(trash, 4, 1, infile)
               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:3: note: in expansion of macro ‘TRASH’
   TRASH;
   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fread(line, 1, 80, infile);
   ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
 #define TRASH fread(trash, 4, 1, infile)
               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:3: note: in expansion of macro ‘TRASH’
   TRASH;
   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
 #define TRASH fread(trash, 4, 1, infile)
               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:3: note: in expansion of macro ‘TRASH’
   TRASH;
   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
 #define TRASH fread(trash, 4, 1, infile)
               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:3: note: in expansion of macro ‘TRASH’
   TRASH;
   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
 #define TRASH fread(trash, 4, 1, infile)
               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:3: note: in expansion of macro ‘TRASH’
   TRASH;
   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fread(line, 1, 80, infile);
   ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
 #define TRASH fread(trash, 4, 1, infile)
               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:3: note: in expansion of macro ‘TRASH’
   TRASH;
   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
 #define TRASH fread(trash, 4, 1, infile)
               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:3: note: in expansion of macro ‘TRASH’
   TRASH;
   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fread(line, 1, 80, infile);
   ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
 #define TRASH fread(trash, 4, 1, infile)
               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:3: note: in expansion of macro ‘TRASH’
   TRASH;
   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
 #define TRASH fread(trash, 4, 1, infile)
               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:3: note: in expansion of macro ‘TRASH’
   TRASH;
   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fread(vertex, 3 * sizeof(float), nvert, infile);
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
 #define TRASH fread(trash, 4, 1, infile)
               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:3: note: in expansion of macro ‘TRASH’
   TRASH;
   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
 #define TRASH fread(trash, 4, 1, infile)
               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:3: note: in expansion of macro ‘TRASH’
   TRASH;
   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fread(access, 3 * sizeof(float), nvert, infile);
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
 #define TRASH fread(trash, 4, 1, infile)
               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:3: note: in expansion of macro ‘TRASH’
   TRASH;
   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
 #define TRASH fread(trash, 4, 1, infile)
               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:3: note: in expansion of macro ‘TRASH’
   TRASH;
   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fread(normal, 3 * sizeof(float), nvert, infile);
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
 #define TRASH fread(trash, 4, 1, infile)
               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:3: note: in expansion of macro ‘TRASH’
   TRASH;
   ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
 #define TRASH fread(trash, 4, 1, infile)
               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:5: note: in expansion of macro ‘TRASH’
     TRASH;
     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fread(triangle, 3 * sizeof(int), ntriangles, infile);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
 #define TRASH fread(trash, 4, 1, infile)
               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:5: note: in expansion of macro ‘TRASH’
     TRASH;
     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
 #define TRASH fread(trash, 4, 1, infile)
               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:5: note: in expansion of macro ‘TRASH’
     TRASH;
     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fread(properties, 3 * sizeof(float), nvert, infile);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
 #define TRASH fread(trash, 4, 1, infile)
               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:5: note: in expansion of macro ‘TRASH’
     TRASH;
     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fread(striangle, sizeof(short), 3 * ntriangles, infile);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
 #define TRASH fread(trash, 4, 1, infile)
               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:5: note: in expansion of macro ‘TRASH’
     TRASH;
     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:280:20: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
 #define TRASH fread(trash, 4, 1, infile)
               ~~~~~^~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:5: note: in expansion of macro ‘TRASH’
     TRASH;
     ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:10: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fread(properties, sizeof(float), 3 * nvert, infile);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:40:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap8_aligned(void *v, long ndata) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap8_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap4_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap2_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function ‘read_vaspxml_structure’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:139:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(lineptr, LINESIZE, data->file);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:144:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
         fgets(lineptr, LINESIZE, data->file);
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function ‘open_vaspxml_read’:
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:86:8: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
        fgets(lineptr, LINESIZE, data->file);
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:92:8: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
        fgets(lineptr, LINESIZE, data->file);
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:47:
At top level:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
 static int get_pte_idx_from_string(const char *label) {
            ^~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp:51:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap8_aligned(void *v, long ndata) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap2_aligned(void *v, long ndata) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap8_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap4_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap2_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function ‘void* open_grid_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:8: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fread(&dataBegin, sizeof(int), 1, fd);
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:60:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:133:13: warning: ‘void strnwscpy(char*, const char*, int)’ defined but not used [-Wunused-function]
 static void strnwscpy(char *target, const char *source, const int len) {
             ^~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: ‘int fort_get_endian_reclen(int, int, int, int*, int*)’ defined but not used [-Wunused-function]
 static int fort_get_endian_reclen(int reclen, int word0, int word1,
            ^~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: ‘int fort_eat_recmark(FILE*, int)’ defined but not used [-Wunused-function]
 static int fort_eat_recmark(FILE *ifp, int recmarklen) {
            ^~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:59:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: ‘void swap8_aligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap8_aligned(void *v, long ndata) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap2_aligned(void *v, long ndata) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap8_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap4_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap2_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h: In function ‘int mdio_readline(md_file*, char*, int, int)’:
contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:426:7: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
  fgets(buf, n, mf->f);
  ~~~~~^~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:48,
                 from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: ‘void swap2_aligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap2_aligned(void *v, long ndata) {
             ^~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: ‘void swap8_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap8_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: ‘void swap4_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap4_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: ‘void swap2_unaligned(void*, long int)’ defined but not used [-Wunused-function]
 static void swap2_unaligned(void *v, long ndata) {
             ^~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:276:45: warning: variable ‘total’ set but not used [-Wunused-but-set-variable]
   int x, y, z, xsize, ysize, zsize, xysize, total;
                                             ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data_ex(void*, molfile_volumetric_readwrite_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:338:45: warning: variable ‘total’ set but not used [-Wunused-but-set-variable]
   int x, y, z, xsize, ysize, zsize, xysize, total;
                                             ^~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:371:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
         fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp: In function ‘int read_vtk_data(void*, int, float*, float*)’:
contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:306:15: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
         fscanf(fd, "%lf %lf %lf", &vx, &vy, &vz);
         ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.cpp:72:
contrib/uiuc/plugins/include/vmdconio.h: At global scope:
contrib/uiuc/plugins/include/vmdconio.h:56:12: warning: ‘int vmdcon_printf(int, const char*, ...)’ defined but not used [-Wunused-function]
 static int vmdcon_printf(int lvl, const char *fmt, ...) {
            ^~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_timestep(void*, int, molfile_timestep_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, bgf->file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, bgf->file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_bonds_aux(void*, int*, int**, int**, float**)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, bgf->file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(line, LINESIZE, bgf->file);
   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(nextline, LINESIZE, bgf->file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
         fgets(line, LINESIZE, bgf->file);
         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘int read_xbgf_structure(void*, int*, molfile_atom_t*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, bgf->file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, bgf->file);
     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function ‘void* open_xbgf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(line, LINESIZE, fd);
     ~~~~~^~~~~~~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/hash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void eatline(FILE*)’:
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:238:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   fgets(readbuf, 1024, fd);    // go on to next line
   ~~~~~^~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp: In function ‘void* open_xsf_read(const char*, const char*, int*)’:
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:408:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
         fgets(readbuf, 256, xsf->fd);
         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:442:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
               fgets(readbuf, 256, xsf->fd);
               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:444:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
               fgets(readbuf, 256, xsf->fd);
               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:446:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
               fgets(readbuf, 256, xsf->fd);
               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:448:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
               fgets(readbuf, 256, xsf->fd);
               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:450:20: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
               fgets(readbuf, 256, xsf->fd);
               ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:473:22: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
                 fgets(readbuf, 256, xsf->fd);
                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:508:16: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
           fgets(readbuf, 256, xsf->fd);
           ~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:37:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h: At global scope:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘int get_pte_idx_from_string(const char*)’ defined but not used [-Wunused-function]
 static int get_pte_idx_from_string(const char *label) {
            ^~~~~~~~~~~~~~~~~~~~~~~
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/inthash.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/inthash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/Parse.cpp -o build/temp.linux-x86_64-3.6/layer0/Parse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/Pixmap.cpp -o build/temp.linux-x86_64-3.6/layer0/Pixmap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:57:
contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: ‘get_pte_idx_from_string’ defined but not used [-Wunused-function]
 static int get_pte_idx_from_string(const char *label) {
            ^~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/Block.cpp -o build/temp.linux-x86_64-3.6/layer0/Block.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/PostProcess.cpp -o build/temp.linux-x86_64-3.6/layer0/PostProcess.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/CarveHelper.cpp -o build/temp.linux-x86_64-3.6/layer0/CarveHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/ShaderMgr.cpp -o build/temp.linux-x86_64-3.6/layer0/ShaderMgr.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer0/CarveHelper.cpp:8:
layer0/CarveHelper.h: In constructor ‘CarveHelper::CarveHelper(PyMOLGlobals*, float, const float*, std::size_t)’:
layer0/CarveHelper.h:23:9: warning: ‘CarveHelper::m_cutoff’ will be initialized after [-Wreorder]
   float m_cutoff;
         ^~~~~~~~
layer0/CarveHelper.h:22:16: warning:   ‘const float* CarveHelper::m_vertices’ [-Wreorder]
   const float* m_vertices;
                ^~~~~~~~~~
layer0/CarveHelper.cpp:20:1: warning:   when initialized here [-Wreorder]
 CarveHelper::CarveHelper(PyMOLGlobals* G, float cutoff, const float* vertices,
 ^~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/ContourSurf.cpp -o build/temp.linux-x86_64-3.6/layer0/ContourSurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from /usr/include/c++/8/cassert:44,
                 from layer0/Field.h:24,
                 from layer0/Isosurf.h:24,
                 from layer0/ContourSurf.cpp:11:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {long unsigned int, long unsigned int, long unsigned int}]’:
layer0/Field.h:114:12:   required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {long unsigned int, long unsigned int, long unsigned int}]’
layer0/ContourSurf.cpp:410:58:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
     assert(sizeof...(pos) <= n_dim());
            ~~~~~~~~~~~~~~~^~~~~~~~~~
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {long unsigned int, long unsigned int, long unsigned int, int}]’:
layer0/Field.h:114:12:   required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {long unsigned int, long unsigned int, long unsigned int, int}]’
layer0/ContourSurf.cpp:419:47:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/Crystal.cpp -o build/temp.linux-x86_64-3.6/layer0/Crystal.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/Deferred.cpp -o build/temp.linux-x86_64-3.6/layer0/Deferred.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/Err.cpp -o build/temp.linux-x86_64-3.6/layer0/Err.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/Feedback.cpp -o build/temp.linux-x86_64-3.6/layer0/Feedback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/Field.cpp -o build/temp.linux-x86_64-3.6/layer0/Field.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer0/Field.cpp: In function ‘PyObject* FieldAsNumPyArray(CField*, short int)’:
layer0/Field.cpp:83:1: warning: label ‘ok_except1’ defined but not used [-Wunused-label]
 ok_except1:
 ^~~~~~~~~~
layer0/Field.cpp: In function ‘CField* FieldNewFromPyList(PyMOLGlobals*, PyObject*)’:
layer0/Field.cpp:179:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   ok = ok && I->size() == size;
              ~~~~~~~~~~^~~~~~~
In file included from /usr/include/c++/8/cassert:44,
                 from layer0/Field.h:24,
                 from layer0/Field.cpp:26:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer0/Field.h:114:12:   required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’
layer0/Field.cpp:343:17:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
     assert(sizeof...(pos) <= n_dim());
            ~~~~~~~~~~~~~~~^~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/File.cpp -o build/temp.linux-x86_64-3.6/layer0/File.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/GenericBuffer.cpp -o build/temp.linux-x86_64-3.6/layer0/GenericBuffer.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/GraphicsUtil.cpp -o build/temp.linux-x86_64-3.6/layer0/GraphicsUtil.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/ShaderPrg.cpp -o build/temp.linux-x86_64-3.6/layer0/ShaderPrg.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/Isosurf.cpp -o build/temp.linux-x86_64-3.6/layer0/Isosurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from /usr/include/c++/8/cassert:44,
                 from layer0/Field.h:24,
                 from layer0/Isosurf.h:24,
                 from layer0/Isosurf.cpp:25:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int, int}]’:
layer0/Isosurf.cpp:552:24:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
     assert(sizeof...(pos) <= n_dim());
            ~~~~~~~~~~~~~~~^~~~~~~~~~
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer0/Isosurf.cpp:1459:32:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = PointType; SizeTs = {int, int, int, int}]’:
layer0/Field.h:134:33:   required from ‘T* CFieldTyped<T>::ptr(SizeTs ...) [with SizeTs = {int, int, int, int}; T = PointType]’
layer0/Isosurf.cpp:1617:19:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’:
layer0/Field.h:114:12:   required from ‘T& CField::get(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’
layer0/Field.h:144:33:   required from ‘T& CFieldTyped<T>::get(SizeTs ...) [with SizeTs = {int, int, int}; T = int]’
layer0/Isosurf.cpp:1456:15:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = int; SizeTs = {int, int, int, int}]’:
layer0/Field.h:114:12:   required from ‘T& CField::get(SizeTs ...) [with T = int; SizeTs = {int, int, int, int}]’
layer0/Field.h:144:33:   required from ‘T& CFieldTyped<T>::get(SizeTs ...) [with SizeTs = {int, int, int, int}; T = int]’
layer0/Isosurf.cpp:1487:13:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/Sphere.cpp -o build/temp.linux-x86_64-3.6/layer0/Sphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/Tetsurf.cpp -o build/temp.linux-x86_64-3.6/layer0/Tetsurf.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from /usr/include/c++/8/cassert:44,
                 from layer0/Field.h:24,
                 from layer0/Isosurf.h:24,
                 from layer0/Tetsurf.cpp:24:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int, int}]’:
layer0/Tetsurf.cpp:802:18:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
     assert(sizeof...(pos) <= n_dim());
            ~~~~~~~~~~~~~~~^~~~~~~~~~
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = PointType; SizeTs = {int, int, int, int}]’:
layer0/Tetsurf.cpp:831:27:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’:
layer0/Field.h:114:12:   required from ‘T& CField::get(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’
layer0/Tetsurf.cpp:791:16:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer0/Field.h:114:12:   required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’
layer0/Tetsurf.cpp:822:18:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/Map.cpp -o build/temp.linux-x86_64-3.6/layer0/Map.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/Texture.cpp -o build/temp.linux-x86_64-3.6/layer0/Texture.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/Match.cpp -o build/temp.linux-x86_64-3.6/layer0/Match.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/Matrix.cpp -o build/temp.linux-x86_64-3.6/layer0/Matrix.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/Tracker.cpp -o build/temp.linux-x86_64-3.6/layer0/Tracker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/Triangle.cpp -o build/temp.linux-x86_64-3.6/layer0/Triangle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/MemoryDebug.cpp -o build/temp.linux-x86_64-3.6/layer0/MemoryDebug.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer0/MemoryDebug.cpp: In function ‘void* VLADeleteRaw(void*, int, unsigned int)’:
layer0/MemoryDebug.cpp:223:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
       if(index < -old_size)
          ~~~~~~^~~~~~~~~~~
layer0/MemoryDebug.cpp:235:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
        (index < vla->size) && ((count + index) <= vla->size)) {
         ~~~~~~^~~~~~~~~~~
layer0/MemoryDebug.cpp: In function ‘void* VLAInsertRaw(void*, int, unsigned int)’:
layer0/MemoryDebug.cpp:256:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
       if(index < -old_size)
          ~~~~~~^~~~~~~~~~~
layer0/MemoryDebug.cpp:263:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
     if(index > old_size)
        ~~~~~~^~~~~~~~~~
layer0/MemoryDebug.cpp:266:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
     if((index >= 0) && (count > 0) && (index <= old_size)) {
                                        ~~~~~~^~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/MemoryUsage.cpp -o build/temp.linux-x86_64-3.6/layer0/MemoryUsage.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer0/MemoryUsage.cpp: In function ‘size_t pymol::memory_usage()’:
layer0/MemoryUsage.cpp:38:21: warning: use of assignment suppression and length modifier together in gnu_scanf format [-Wformat=]
     std::fscanf(fp, "%*zu%zu", &vmRSS);
                     ^~~~~~~~~
layer0/MemoryUsage.cpp:38:16: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result]
     std::fscanf(fp, "%*zu%zu", &vmRSS);
     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/MyPNG.cpp -o build/temp.linux-x86_64-3.6/layer0/MyPNG.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer0/MyPNG.cpp: In function ‘int MyPNGWrite(const char*, const pymol::Image&, float, int, int, float, float, png_outbuf_t*)’:
layer0/MyPNG.cpp:299:20: warning: comparison of integer expressions of different signedness: ‘png_uint_32’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
       for(k = 0; k < height; k++)
                  ~~^~~~~~~~
layer0/MyPNG.cpp:340:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
           for(b = 0; b < height; b++) {
                      ~~^~~~~~~~
layer0/MyPNG.cpp:341:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
             for(a = 0; a < width; a++) {
                        ~~^~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/Util.cpp -o build/temp.linux-x86_64-3.6/layer0/Util.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/FontGLUTHel10.cpp -o build/temp.linux-x86_64-3.6/layer1/FontGLUTHel10.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/FontGLUTHel12.cpp -o build/temp.linux-x86_64-3.6/layer1/FontGLUTHel12.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/FontGLUTHel18.cpp -o build/temp.linux-x86_64-3.6/layer1/FontGLUTHel18.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/Util2.cpp -o build/temp.linux-x86_64-3.6/layer0/Util2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/FontType.cpp -o build/temp.linux-x86_64-3.6/layer1/FontType.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/Vector.cpp -o build/temp.linux-x86_64-3.6/layer0/Vector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/Movie.cpp -o build/temp.linux-x86_64-3.6/layer1/Movie.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/Word.cpp -o build/temp.linux-x86_64-3.6/layer0/Word.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/ccealignmodule.cpp -o build/temp.linux-x86_64-3.6/layer0/ccealignmodule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from include/tnt/tnt.h:49,
                 from layer0/ccealignmodule.cpp:39:
include/tnt/tnt_array2d_utils.h: In function ‘std::istream& TNT::operator>>(std::istream&, TNT::Array2D<T>&)’:
include/tnt/tnt_array2d_utils.h:62:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
     for (int i=0; i<M; i++)
     ^~~
include/tnt/tnt_array2d_utils.h:68:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  A = B;
  ^
In file included from include/tnt/tnt.h:50,
                 from layer0/ccealignmodule.cpp:39:
include/tnt/tnt_array3d_utils.h: In function ‘std::istream& TNT::operator>>(std::istream&, TNT::Array3D<T>&)’:
include/tnt/tnt_array3d_utils.h:47:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
     for (int i=0; i<M; i++)
     ^~~
include/tnt/tnt_array3d_utils.h:52:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  A = B;
  ^
In file included from include/tnt/tnt.h:56,
                 from layer0/ccealignmodule.cpp:39:
include/tnt/tnt_fortran_array2d_utils.h: In function ‘std::istream& TNT::operator>>(std::istream&, TNT::Fortran_Array2D<T>&)’:
include/tnt/tnt_fortran_array2d_utils.h:61:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
     for (int i=1; i<=M; i++)
     ^~~
include/tnt/tnt_fortran_array2d_utils.h:67:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  A = B;
  ^
In file included from include/tnt/tnt.h:57,
                 from layer0/ccealignmodule.cpp:39:
include/tnt/tnt_fortran_array3d_utils.h: In function ‘std::istream& TNT::operator>>(std::istream&, TNT::Fortran_Array3D<T>&)’:
include/tnt/tnt_fortran_array3d_utils.h:65:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
     for (int i=1; i<=M; i++)
     ^~~
include/tnt/tnt_fortran_array3d_utils.h:70:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  A = B;
  ^
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/marching_cubes.cpp -o build/temp.linux-x86_64-3.6/layer0/marching_cubes.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer0/marching_cubes.cpp: In function ‘mc::Mesh mc::march(const mc::Field&, float, bool)’:
layer0/marching_cubes.cpp:517:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare]
   for (int z = 0; z < zDim; ++z) {
                   ~~^~~~~~
layer0/marching_cubes.cpp:550:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare]
   for (int z = 0; z < zEnd; ++z) {
                   ~~^~~~~~
layer0/marching_cubes.cpp:603:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
           if (z == zEnd - 1) {
               ~~^~~~~~~~~~~
layer0/marching_cubes.cpp:608:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
         if (z == zEnd - 1) {
             ~~^~~~~~~~~~~
layer0/marching_cubes.cpp: In function ‘void mc::calculateNormals(mc::Mesh&)’:
layer0/marching_cubes.cpp:681:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   for (int i = 0; i < vertexCount; ++i) {
                   ~~^~~~~~~~~~~~~
layer0/marching_cubes.cpp:686:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   for (int i = 0; i < triangleCount; ++i) {
                   ~~^~~~~~~~~~~~~~~
layer0/marching_cubes.cpp:720:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   for (int i = 0; i < vertexCount; ++i) {
                   ~~^~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/Ortho.cpp -o build/temp.linux-x86_64-3.6/layer1/Ortho.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer0/os_gl.cpp -o build/temp.linux-x86_64-3.6/layer0/os_gl.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/Basis.cpp -o build/temp.linux-x86_64-3.6/layer1/Basis.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Ortho.cpp:783:6: warning: ‘void OrthoKeyCmmd(PyMOLGlobals*, unsigned char)’ defined but not used [-Wunused-function]
 void OrthoKeyCmmd(PyMOLGlobals * G, unsigned char k)
      ^~~~~~~~~~~~
In file included from /usr/include/string.h:495,
                 from /usr/include/python3.6m/Python.h:30,
                 from layer0/os_python.h:34,
                 from layer1/Ortho.cpp:24:
In function ‘char* strcat(char*, const char*)’,
    inlined from ‘void OrthoSpecial(PyMOLGlobals*, int, int, int, int)’ at layer1/Ortho.cpp:332:13:
/usr/include/bits/string_fortified.h:143:33: warning: ‘char* __builtin_strcat(char*, const char*)’ accessing 81 or more bytes at offsets [80, 261200] and [0, 9223372036854775807] may overlap 1 byte at offset [80, 9223372036854775807] [-Wrestrict]
   return __builtin___strcat_chk (__dest, __src, __glibc_objsize (__dest));
          ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘char* strcat(char*, const char*)’,
    inlined from ‘void OrthoSpecial(PyMOLGlobals*, int, int, int, int)’ at layer1/Ortho.cpp:349:13:
/usr/include/bits/string_fortified.h:143:33: warning: ‘char* __builtin_strcat(char*, const char*)’ accessing 81 or more bytes at offsets [80, 261200] and [0, 9223372036854775807] may overlap 1 byte at offset [80, 9223372036854775807] [-Wrestrict]
   return __builtin___strcat_chk (__dest, __src, __glibc_objsize (__dest));
          ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/ButMode.cpp -o build/temp.linux-x86_64-3.6/layer1/ButMode.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/P.cpp -o build/temp.linux-x86_64-3.6/layer1/P.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer1/ButMode.cpp:22:
layer1/ButMode.cpp: In function ‘void ButModeFree(PyMOLGlobals*)’:
layer1/ButMode.cpp:144:14: warning: deleting object of polymorphic class type ‘CButMode’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   DeleteP(G->ButMode);
              ^~~~~~~
layer0/MemoryDebug.h:86:39: note: in definition of macro ‘DeleteP’
 #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
                                       ^~~
layer1/P.cpp: In function ‘int WrapperObjectAssignSubScript(PyObject*, PyObject*, PyObject*)’:
layer1/P.cpp:825:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
       if (strlen(valstr) > ap->maxlen) {
           ~~~~~~~~~~~~~~~^~~~~~~~~~~~
layer1/P.cpp:849:18: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
       if (valint == -1 && PyErr_Occurred())
           ~~~~~~~^~~~~
layer1/P.cpp: At global scope:
layer1/P.cpp:2422:13: warning: ‘void PLockAPIWhileBlocked(PyMOLGlobals*)’ defined but not used [-Wunused-function]
 static void PLockAPIWhileBlocked(PyMOLGlobals * G)
             ^~~~~~~~~~~~~~~~~~~~
layer1/P.cpp:2411:13: warning: ‘void PUnlockAPIWhileBlocked(PyMOLGlobals*)’ defined but not used [-Wunused-function]
 static void PUnlockAPIWhileBlocked(PyMOLGlobals * G)
             ^~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/CGO.cpp -o build/temp.linux-x86_64-3.6/layer1/CGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/P.cpp: In function ‘int PLabelAtomAlt(PyMOLGlobals*, AtomInfoType*, const char*, const char*, int)’:
layer1/P.cpp:322:12: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound 1024 equals destination size [-Wstringop-truncation]
     strncpy(label, origexpr, OrthoLineLength);
     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/PConv.cpp -o build/temp.linux-x86_64-3.6/layer1/PConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/CGO.cpp: In function ‘void CheckAttributesForUsage(const CGO*, AttribDataDesc&, AttribDataDesc&, CGO*, bool&)’:
layer1/CGO.cpp:10842:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
     for (auto idx = 0; idx < attrIdx; ++idx){
                        ~~~~^~~~~~~~~
layer1/CGO.cpp: In function ‘void PopulateOpsIntoStructuresForConversion(std::map<int, int>&, std::map<int, std::map<int, AttribOp*> >&, AttribDataDesc&, AttribDataDesc&, int&, bool)’:
layer1/CGO.cpp:10920:37: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
           if (attrOp->incr_vertices != vertsperpickinfo){
               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer1/CGO.cpp: In function ‘CGO* CGOConvertToShader(const CGO*, AttribDataDesc&, AttribDataDesc&, int, GenericBuffer<34962>::buffer_layout, bool, int*, int, int)’:
layer1/CGO.cpp:11222:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<AttribDesc>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
             for (auto idx = 0; idx < attrData.size(); ++idx){
                                ~~~~^~~~~~~~~~~~~~~~~
layer1/CGO.cpp:11234:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<AttribDesc>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
             for (auto idx = 0; idx < attrData.size(); ++idx){
                                ~~~~^~~~~~~~~~~~~~~~~
layer1/CGO.cpp:11243:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
           for (int nxt = 0; nxt < attribOp->incr_vertices; ++nxt){
                             ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
layer1/PConv.cpp: In function ‘int PConvPyListToBitmask(PyObject*, int*, ov_size)’:
layer1/PConv.cpp:83:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(int i = 0; i < ll; i++)
                  ~~^~~~
layer1/PConv.cpp: In function ‘PyObject* PConvLabPosVecToPyList(const std::vector<LabPosType>&)’:
layer1/PConv.cpp:1194:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<LabPosType>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for (int a = 0; a < vec.size(); a++) {
                     ~~^~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/Picking.cpp -o build/temp.linux-x86_64-3.6/layer1/Picking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/Pop.cpp -o build/temp.linux-x86_64-3.6/layer1/Pop.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer1/Pop.cpp:22:
layer1/Pop.cpp: In function ‘void PopFree(PyMOLGlobals*)’:
layer1/Pop.cpp:54:14: warning: deleting object of polymorphic class type ‘CPop’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   DeleteP(G->Pop);
              ^~~
layer0/MemoryDebug.h:86:39: note: in definition of macro ‘DeleteP’
 #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
                                       ^~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/PyMOLObject.cpp -o build/temp.linux-x86_64-3.6/layer1/PyMOLObject.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/Ray.cpp -o build/temp.linux-x86_64-3.6/layer1/Ray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Ray.cpp: In function ‘void RayRender(CRay*, unsigned int*, double, float, int, unsigned int*)’:
layer1/Ray.cpp:6065:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
       if(x_stop > width)
          ~~~~~~~^~~~~~~
layer1/Ray.cpp:6067:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
       if(y_stop > height)
          ~~~~~~~^~~~~~~~
layer1/Ray.cpp:6148:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
       for(y = 0; y < height; y++)
                  ~~^~~~~~~~
layer1/Ray.cpp:6149:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
         for(x = 0; x < width; x++) {
                    ~~^~~~~~~
layer1/Ray.cpp:6160:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
           if(x < (width - 1)) {
              ~~^~~~~~~~~~~~~
layer1/Ray.cpp:6171:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
           if(y < (height - 1)) {
              ~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6232:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
             for(y = 0; y < height; y++)
                        ~~^~~~~~~~
layer1/Ray.cpp:6233:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
               for(x = 0; x < width; x++) {
                          ~~^~~~~~~
layer1/Ray.cpp:6243:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
                   if(x < (width - 1)) {
                      ~~^~~~~~~~~~~~~
layer1/Ray.cpp:6255:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
                   if(y < (height - 1)) {
                      ~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6306:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
           for(y = 0; y < height; y++){
                      ~~^~~~~~~~
layer1/Ray.cpp:6326:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
             for(x = 0; x < width; x++) {
                        ~~^~~~~~~
layer1/Ray.cpp:6345:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
                   if(x < (width - 1)) {
                      ~~^~~~~~~~~~~~~
layer1/Ray.cpp:6359:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
                   if(y < (height - 1)) {
                      ~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6373:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
                   if(x && (y < (height - 1))) {
                            ~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6380:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
                   if(y && (x < (width - 1))) {
                            ~~^~~~~~~~~~~~~
layer1/Ray.cpp:6387:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
                   if((y < (height - 1)) && (x < (width - 1))) {
                       ~~^~~~~~~~~~~~~~
layer1/Ray.cpp:6387:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
                   if((y < (height - 1)) && (x < (width - 1))) {
                                             ~~^~~~~~~~~~~~~
layer1/Ray.cpp:6543:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
       for(y = 0; y < height; y++) {
                  ~~^~~~~~~~
layer1/Ray.cpp:6544:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  for(x = 0; x < width; x++) {
             ~~^~~~~~~
layer1/Ray.cpp: In function ‘int RayTraceThread(CRayThreadInfo*)’:
layer1/Ray.cpp:3606:32: warning: ‘hl’ may be used uninitialized in this function [-Wmaybe-uninitialized]
    compute_background_for_pixel(bkrd_uc, isOutsideInY,
    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
               bg_image_mode, bg_image_tilesize, bg_rgb, bg_image_linear,
               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
               (unsigned char*) T->bkrd_data, T->bgWidth, T->bgHeight,
               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
               x, wr, hl, hpixelx, orig_opaque_back );
               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer1/Ray.cpp: In function ‘void RayRenderVRML2(CRay*, int, int, char**, float, float, float, float, float)’:
layer1/Ray.cpp:1531:19: warning: ‘%s’ directive writing up to 1023 bytes into a region of size between 0 and 914 [-Wformat-overflow=]
                   "Transform {\n"
                   ^~~~~~~~~~~~~~~
                   " translation %8.6f %8.6f %8.6f\n"
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                   " rotation %8.6f %8.6f %8.6f %8.6f\n"
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                   " children [\n"
                   ~~~~~~~~~~~~~~~
                   "%s"
                   ~~~~
                   " ]\n"
                   ~~~~~~
                   "}\n",
                   ~~~~~
layer1/Ray.cpp:1540:72:
                   vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry);
                                                                        ~~~~~~~~
layer1/Ray.cpp:1530:18: note: ‘sprintf’ output between 116 and 3302 bytes into a destination of size 1024
           sprintf(buffer,
           ~~~~~~~^~~~~~~~
                   "Transform {\n"
                   ~~~~~~~~~~~~~~~
                   " translation %8.6f %8.6f %8.6f\n"
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                   " rotation %8.6f %8.6f %8.6f %8.6f\n"
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                   " children [\n"
                   ~~~~~~~~~~~~~~~
                   "%s"
                   ~~~~
                   " ]\n"
                   ~~~~~~
                   "}\n",
                   ~~~~~~
                   vert2[0] - mid[0],
                   ~~~~~~~~~~~~~~~~~~
                   vert2[1] - mid[1],
                   ~~~~~~~~~~~~~~~~~~
                   vert2[2] - mid[2], axis[0], axis[1], axis[2], angle, geometry);
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/Rep.cpp -o build/temp.linux-x86_64-3.6/layer1/Rep.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/Scene.cpp -o build/temp.linux-x86_64-3.6/layer1/Scene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Scene.cpp: In function ‘int SceneViewEqual(float*, float*)’:
layer1/Scene.cpp:127:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(i = 0; i < cSceneViewSize; i++) {
              ~~^~~~~~~~~~~~~~~~
layer1/Scene.cpp: In function ‘void SceneFree(PyMOLGlobals*)’:
layer1/Scene.cpp:4071:13: warning: deleting object of polymorphic class type ‘CScene’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   delete G->Scene;
             ^~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/COLLADA.cpp -o build/temp.linux-x86_64-3.6/layer1/COLLADA.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/Character.cpp -o build/temp.linux-x86_64-3.6/layer1/Character.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/SceneMouse.cpp -o build/temp.linux-x86_64-3.6/layer1/SceneMouse.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/Color.cpp -o build/temp.linux-x86_64-3.6/layer1/Color.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Color.cpp: In function ‘ObjectGadgetRamp* ColorGetRamp(PyMOLGlobals*, int)’:
layer1/Color.cpp:180:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     if (index < I->Ext.size()) {
         ~~~~~~^~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘int ColorExtFromPyList(PyMOLGlobals*, PyObject*, int)’:
layer1/Color.cpp:501:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   for (int a = 0; a < n_ext; ++a) {
                   ~~^~~~~~~
In file included from /usr/include/c++/8/cassert:44,
                 from /usr/include/glm/detail/setup.hpp:28,
                 from /usr/include/glm/detail/precision.hpp:6,
                 from /usr/include/glm/detail/type_vec.hpp:6,
                 from /usr/include/glm/detail/type_vec2.hpp:6,
                 from /usr/include/glm/vec2.hpp:6,
                 from layer0/GenericBuffer.h:12,
                 from layer0/ShaderMgr.h:24,
                 from layer1/Scene.h:29,
                 from layer3/Executive.h:35,
                 from layer1/Color.cpp:31:
layer1/Color.cpp:515:18: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(a_new <= I->Ext.size());
            ~~~~~~^~~~~~~~~~~~~~~~
layer1/Color.cpp:518:15: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     if (a_new == I->Ext.size()) {
         ~~~~~~^~~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘int ColorFromPyList(PyMOLGlobals*, PyObject*, int)’:
layer1/Color.cpp:569:44: warning: comparison of integer expressions of different signedness: ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
     if (partial_restore && I->Color.size() > index) {
                            ~~~~~~~~~~~~~~~~^~~~~~~
layer1/Color.cpp:575:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     if (index >= I->Color.size()) {
         ~~~~~~^~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/cassert:44,
                 from /usr/include/glm/detail/setup.hpp:28,
                 from /usr/include/glm/detail/precision.hpp:6,
                 from /usr/include/glm/detail/type_vec.hpp:6,
                 from /usr/include/glm/detail/type_vec2.hpp:6,
                 from /usr/include/glm/vec2.hpp:6,
                 from layer0/GenericBuffer.h:12,
                 from layer0/ShaderMgr.h:24,
                 from layer1/Scene.h:29,
                 from layer3/Executive.h:35,
                 from layer1/Color.cpp:31:
layer1/Color.cpp:576:30: warning: comparison of integer expressions of different signedness: ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
       assert(I->Color.size() == index);
              ~~~~~~~~~~~~~~~~^~~~~~~~
layer1/Color.cpp: In function ‘int ColorGetIndex(PyMOLGlobals*, const char*)’:
layer1/Color.cpp:683:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
       if((i < I->Color.size()) && (i >= 0))
           ~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘const char* ColorGetName(PyMOLGlobals*, int)’:
layer1/Color.cpp:764:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   if((index >= 0) && (index < I->Color.size())) {
                       ~~~~~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp:776:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     if (a < I->Ext.size()) {
         ~~^~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘int ColorGetStatus(PyMOLGlobals*, int)’:
layer1/Color.cpp:792:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   if((index >= 0) && (index < I->Color.size())) {
                       ~~~~~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/cassert:44,
                 from /usr/include/glm/detail/setup.hpp:28,
                 from /usr/include/glm/detail/precision.hpp:6,
                 from /usr/include/glm/detail/type_vec.hpp:6,
                 from /usr/include/glm/detail/type_vec2.hpp:6,
                 from /usr/include/glm/vec2.hpp:6,
                 from layer0/GenericBuffer.h:12,
                 from layer0/ShaderMgr.h:24,
                 from layer1/Scene.h:29,
                 from layer3/Executive.h:35,
                 from layer1/Color.cpp:31:
layer1/Color.cpp: In function ‘void ColorReset(PyMOLGlobals*)’:
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1026:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("white", 1.F, 1.F, 1.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1027:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("black", 0.F, 0.F, 0.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1028:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("blue", 0.F, 0.F, 1.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1029:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("green", 0.F, 1.F, 0.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1030:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("red", 1.F, 0.F, 0.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1031:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("cyan", 0.F, 1.F, 1.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1032:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("yellow", 1.F, 1.F, 0.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1033:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("dash", 1.F, 1.F, 0.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1034:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("magenta", 1.F, 0.F, 1.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1035:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("salmon", 1.F, 0.6F, 0.6F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1036:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("lime", 0.5F, 1.F, 0.5F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1037:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("slate", 0.5F, 0.5F, 1.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1038:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("hotpink", 1.F, 0.F, 0.5F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1039:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("orange", 1.F, 0.5F, 0.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1040:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("chartreuse", 0.5F, 1.F, 0.F); /* AKA puke green */
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1041:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("limegreen", 0.F, 1.F, 0.5F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1042:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("purpleblue", 0.5F, 0.F, 1.F); /* legacy name */
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1043:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("marine", 0.F, 0.5F, 1.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1044:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("olive", 0.77F, 0.7F, 0.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1045:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("purple", 0.75F, 0.F, 0.75F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1046:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("teal", 0.F, 0.75F, 0.75F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1047:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("ruby", 0.6F, 0.2F, 0.2F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1048:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("forest", 0.2F, 0.6F, 0.2F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1049:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("deepblue", 0.25F, 0.25F, 0.65F); /* was "deep" */
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1050:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("grey", 0.5F, 0.5F, 0.5F); /* english spelling */
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1051:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("gray", 0.5F, 0.5F, 0.5F); /* american spelling */
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1052:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("carbon", 0.2F, 1.F, 0.2F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1053:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("nitrogen", 0.2F, 0.2F, 1.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1054:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("oxygen", 1.F, 0.3F, 0.3F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1055:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("hydrogen", 0.9F, 0.9F, 0.9F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1056:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("brightorange", 1.F, 0.7F, 0.2F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1057:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("sulfur", 0.9F, 0.775F, 0.25F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1058:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("tv_red", 1.F, 0.2F, 0.2F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1059:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("tv_green", 0.2F, 1.F, 0.2F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1060:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("tv_blue", 0.3F, 0.3F, 1.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1061:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("tv_yellow", 1.F, 1.F, 0.2F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1062:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("yelloworange", 1.F, 0.87F, 0.37F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1063:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("tv_orange", 1.F, 0.55F, 0.15F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1064:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("br0", 0.1F, 0.1F, 1.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1065:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("br1", 0.2F, 0.1F, 0.9F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1066:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("br2", 0.3F, 0.1F, 0.8F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1067:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("br3", 0.4F, 0.1F, 0.7F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1068:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("br4", 0.5F, 0.1F, 0.6F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1069:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("br5", 0.6F, 0.1F, 0.5F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1070:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("br6", 0.7F, 0.1F, 0.4F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1071:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("br7", 0.8F, 0.1F, 0.3F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1072:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("br8", 0.9F, 0.1F, 0.2F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1073:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("br9", 1.F, 0.1F, 0.1F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1074:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("pink", 1.F, 0.65F, 0.85F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1075:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("firebrick", 0.698F, 0.13F, 0.13F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1076:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("chocolate", 0.555F, 0.222F, 0.111F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1077:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("brown", 0.65F, 0.32F, 0.17F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1078:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("wheat", 0.99F, 0.82F, 0.65F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1079:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("violet", 1.F, 0.5F, 1.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1088:5: note: in expansion of macro ‘reg_named_color’
     reg_named_color(name, a / 99.F, a / 99.F, a / 99.F);
     ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1091:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("lightmagenta", 1.F, 0.2F, 0.8F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1105:5: note: in expansion of macro ‘reg_named_color’
     reg_named_color(name,
     ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1121:5: note: in expansion of macro ‘reg_named_color’
     reg_named_color(name,
     ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1137:5: note: in expansion of macro ‘reg_named_color’
     reg_named_color(name,
     ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1155:5: note: in expansion of macro ‘reg_named_color’
     reg_named_color(name,
     ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1161:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("density", 0.1F, 0.1F, 0.6F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1168:5: note: in expansion of macro ‘reg_named_color’
     reg_named_color(name, a / 99.F, a / 99.F, a / 99.F);
     ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1183:5: note: in expansion of macro ‘reg_named_color’
     reg_named_color(name,
     ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1189:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("paleyellow", 1.F, 1.F, 0.5F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1190:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("aquamarine", 0.5F, 1.F, 1.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1191:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("deepsalmon", 1.F, 0.5F, 0.5F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1192:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("palegreen", 0.65F, 0.9F, 0.65F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1193:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("deepolive", 0.6F, 0.6F, 0.1F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1194:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("deeppurple", 0.6F, 0.1F, 0.6F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1195:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("deepteal", 0.1F, 0.6F, 0.6F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1196:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("lightblue", 0.75F, 0.75F, 1.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1197:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("lightorange", 1.F, 0.8F, 0.5F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1198:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("palecyan", 0.8F, 1.F, 1.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1199:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("lightteal", 0.4F, 0.7F, 0.7F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1200:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("splitpea", 0.52F, 0.75F, 0.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1201:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("raspberry", 0.7F, 0.3F, 0.4F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1202:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("sand", 0.72F, 0.55F, 0.3F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1203:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("smudge", 0.55F, 0.7F, 0.4F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1204:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("violetpurple", 0.55F, 0.25F, 0.6F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1205:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("dirtyviolet", 0.7F, 0.5F, 0.5F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1208:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("_deepsalmon", 1.F, 0.42F, 0.42F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1210:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("lightpink", 1.F, 0.75F, 0.87F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1211:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("greencyan", 0.25F, 1.F, 0.75F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1212:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("limon", 0.75F, 1.F, 0.25F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1213:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("skyblue", 0.2F, 0.5F, 0.8F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1214:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("bluewhite", 0.85F, 0.85F, 1.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1215:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("warmpink", 0.85F, 0.2F, 0.5F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1216:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("darksalmon", 0.73F, 0.55F, 0.52F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1217:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("helium", 0.850980392F, 1.F, 1.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1218:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("lithium", 0.8F, 0.501960784F, 1.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1219:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("beryllium", 0.760784314F, 1.F, 0.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1220:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("boron", 1.F, 0.709803922F, 0.709803922F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1221:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("fluorine", 0.701960784F, 1.F, 1.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1222:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("neon", 0.701960784F, 0.890196078F, 0.960784314F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1223:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("sodium", 0.670588235F, 0.360784314F, 0.949019608F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1224:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("magnesium", 0.541176471F, 1.F, 0.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1225:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("aluminum", 0.749019608F, 0.650980392F, 0.650980392F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1226:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("silicon", 0.941176471F, 0.784313725F, 0.62745098F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1227:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("phosphorus", 1.F, 0.501960784F, 0.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1228:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("chlorine", 0.121568627F, 0.941176471F, 0.121568627F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1229:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("argon", 0.501960784F, 0.819607843F, 0.890196078F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1230:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("potassium", 0.560784314F, 0.250980392F, 0.831372549F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1231:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("calcium", 0.239215686F, 1.F, 0.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1232:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("scandium", 0.901960784F, 0.901960784F, 0.901960784F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1233:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("titanium", 0.749019608F, 0.760784314F, 0.780392157F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1234:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("vanadium", 0.650980392F, 0.650980392F, 0.670588235F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1235:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("chromium", 0.541176471F, 0.6F, 0.780392157F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1236:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("manganese", 0.611764706F, 0.478431373F, 0.780392157F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1237:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("iron", 0.878431373F, 0.4F, 0.2F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1238:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("cobalt", 0.941176471F, 0.564705882F, 0.62745098F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1239:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("nickel", 0.31372549F, 0.815686275F, 0.31372549F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1240:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("copper", 0.784313725F, 0.501960784F, 0.2F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1241:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("zinc", 0.490196078F, 0.501960784F, 0.690196078F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1242:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("gallium", 0.760784314F, 0.560784314F, 0.560784314F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1243:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("germanium", 0.4F, 0.560784314F, 0.560784314F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1244:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("arsenic", 0.741176471F, 0.501960784F, 0.890196078F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1245:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("selenium", 1.F, 0.631372549F, 0.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1246:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("bromine", 0.650980392F, 0.160784314F, 0.160784314F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1247:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("krypton", 0.360784314F, 0.721568627F, 0.819607843F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1248:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("rubidium", 0.439215686F, 0.180392157F, 0.690196078F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1249:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("strontium", 0.F, 1.F, 0.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1250:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("yttrium", 0.580392157F, 1.F, 1.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1251:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("zirconium", 0.580392157F, 0.878431373F, 0.878431373F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1252:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("niobium", 0.450980392F, 0.760784314F, 0.788235294F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1253:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("molybdenum", 0.329411765F, 0.709803922F, 0.709803922F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1254:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("technetium", 0.231372549F, 0.619607843F, 0.619607843F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1255:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("ruthenium", 0.141176471F, 0.560784314F, 0.560784314F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1256:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("rhodium", 0.039215686F, 0.490196078F, 0.549019608F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1257:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("palladium", 0.F, 0.411764706F, 0.521568627F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1258:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("silver", 0.752941176F, 0.752941176F, 0.752941176F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1259:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("cadmium", 1.F, 0.850980392F, 0.560784314F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1260:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("indium", 0.650980392F, 0.458823529F, 0.450980392F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1261:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("tin", 0.4F, 0.501960784F, 0.501960784F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1262:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("antimony", 0.619607843F, 0.388235294F, 0.709803922F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1263:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("tellurium", 0.831372549F, 0.478431373F, 0.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1264:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("iodine", 0.580392157F, 0.F, 0.580392157F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1265:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("xenon", 0.258823529F, 0.619607843F, 0.690196078F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1266:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("cesium", 0.341176471F, 0.090196078F, 0.560784314F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1267:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("barium", 0.F, 0.788235294F, 0.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1268:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("lanthanum", 0.439215686F, 0.831372549F, 1.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1269:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("cerium", 1.F, 1.F, 0.780392157F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1270:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("praseodymium", 0.850980392F, 1.F, 0.780392157F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1271:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("neodymium", 0.780392157F, 1.F, 0.780392157F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1272:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("promethium", 0.639215686F, 1.F, 0.780392157F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1273:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("samarium", 0.560784314F, 1.F, 0.780392157F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1274:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("europium", 0.380392157F, 1.F, 0.780392157F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1275:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("gadolinium", 0.270588235F, 1.F, 0.780392157F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1276:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("terbium", 0.188235294F, 1.F, 0.780392157F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1277:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("dysprosium", 0.121568627F, 1.F, 0.780392157F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1278:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("holmium", 0.F, 1.F, 0.611764706F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1279:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("erbium", 0.F, 0.901960784F, 0.458823529F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1280:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("thulium", 0.F, 0.831372549F, 0.321568627F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1281:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("ytterbium", 0.F, 0.749019608F, 0.219607843F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1282:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("lutetium", 0.F, 0.670588235F, 0.141176471F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1283:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("hafnium", 0.301960784F, 0.760784314F, 1.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1284:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("tantalum", 0.301960784F, 0.650980392F, 1.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1285:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("tungsten", 0.129411765F, 0.580392157F, 0.839215686F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1286:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("rhenium", 0.149019608F, 0.490196078F, 0.670588235F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1287:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("osmium", 0.149019608F, 0.4F, 0.588235294F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1288:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("iridium", 0.090196078F, 0.329411765F, 0.529411765F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1289:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("platinum", 0.815686275F, 0.815686275F, 0.878431373F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1290:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("gold", 1.F, 0.819607843F, 0.137254902F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1291:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("mercury", 0.721568627F, 0.721568627F, 0.815686275F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1292:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("thallium", 0.650980392F, 0.329411765F, 0.301960784F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1293:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("lead", 0.341176471F, 0.349019608F, 0.380392157F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1294:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("bismuth", 0.619607843F, 0.309803922F, 0.709803922F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1295:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("polonium", 0.670588235F, 0.360784314F, 0.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1296:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("astatine", 0.458823529F, 0.309803922F, 0.270588235F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1297:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("radon", 0.258823529F, 0.509803922F, 0.588235294F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1298:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("francium", 0.258823529F, 0.F, 0.4F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1299:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("radium", 0.F, 0.490196078F, 0.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1300:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("actinium", 0.439215686F, 0.670588235F, 0.980392157F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1301:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("thorium", 0.F, 0.729411765F, 1.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1302:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("protactinium", 0.F, 0.631372549F, 1.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1303:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("uranium", 0.F, 0.560784314F, 1.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1304:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("neptunium", 0.F, 0.501960784F, 1.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1305:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("plutonium", 0.F, 0.419607843F, 1.F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1306:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("americium", 0.329411765F, 0.360784314F, 0.949019608F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1307:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("curium", 0.470588235F, 0.360784314F, 0.890196078F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1308:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("berkelium", 0.541176471F, 0.309803922F, 0.890196078F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1309:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("californium", 0.631372549F, 0.211764706F, 0.831372549F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1310:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("einsteinium", 0.701960784F, 0.121568627F, 0.831372549F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1311:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("fermium", 0.701960784F, 0.121568627F, 0.729411765F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1312:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("mendelevium", 0.701960784F, 0.050980392F, 0.650980392F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1313:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("nobelium", 0.741176471F, 0.050980392F, 0.529411765F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1314:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("lawrencium", 0.780392157F, 0.F, 0.4F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1315:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("rutherfordium", 0.8F, 0.F, 0.349019608F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1316:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("dubnium", 0.819607843F, 0.F, 0.309803922F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1317:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("seaborgium", 0.850980392F, 0.F, 0.270588235F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1318:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("bohrium", 0.878431373F, 0.F, 0.219607843F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1319:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("hassium", 0.901960784F, 0.F, 0.180392157F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1320:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("meitnerium", 0.921568627F, 0.F, 0.149019608F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1321:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("deuterium", 0.9F, 0.9F, 0.9F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1322:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("lonepair", 0.5F, 0.5F, 0.5F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp:1023:25: warning: comparison of integer expressions of different signedness: ‘std::unordered_map<std::__cxx11::basic_string<char>, int>::mapped_type’ {aka ‘int’} and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     assert(I->Idx[name] == Color.size() - 1);                                  \
layer1/Color.cpp:1323:3: note: in expansion of macro ‘reg_named_color’
   reg_named_color("pseudoatom", 0.9F, 0.9F, 0.9F);
   ^~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘void ColorUpdateFromLut(PyMOLGlobals*, int)’:
layer1/Color.cpp:1695:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(i = 0; i < I->Color.size(); i++) {
              ~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp:1699:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     if(index < I->Color.size()) {
        ~~~~~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘const float* ColorGet(PyMOLGlobals*, int)’:
layer1/Color.cpp:1808:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   if((index >= 0) && (index < I->Color.size())) {
                       ~~~~~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘const float* ColorGetRaw(PyMOLGlobals*, int)’:
layer1/Color.cpp:1835:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   if((index >= 0) && (index < I->Color.size())) {
                       ~~~~~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp: In function ‘int ColorGetEncoded(PyMOLGlobals*, int, float*)’:
layer1/Color.cpp:1853:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   if((index >= 0) && (index < I->Color.size())) {
                       ~~~~~~^~~~~~~~~~~~~~~~~
layer1/Color.cpp: In instantiation of ‘int findByCaseInsensitiveName(PyMOLGlobals*, const Sequence&, const char*) [with Sequence = std::vector<ExtRec>]’:
layer1/Color.cpp:304:58:   required from here
layer1/Color.cpp:245:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for (int a = 0; a < seq.size(); ++a) {
layer1/Color.cpp: In instantiation of ‘int findByCaseInsensitiveName(PyMOLGlobals*, const Sequence&, const char*) [with Sequence = std::vector<ColorRec>]’:
layer1/Color.cpp:626:56:   required from here
layer1/Color.cpp:245:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
layer1/Color.cpp: In instantiation of ‘int findByCaseInsensitivePrefix(PyMOLGlobals*, const Sequence&, const char*, int&) [with Sequence = std::vector<ColorRec>]’:
layer1/Color.cpp:741:66:   required from here
layer1/Color.cpp:275:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ColorRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for (int a = 0; a < seq.size(); ++a) {
layer1/Color.cpp: In instantiation of ‘int findByCaseInsensitivePrefix(PyMOLGlobals*, const Sequence&, const char*, int&) [with Sequence = std::vector<ExtRec>]’:
layer1/Color.cpp:743:76:   required from here
layer1/Color.cpp:275:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ExtRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
layer1/SceneMouse.cpp: In function ‘void SceneClickPickBond(PyMOLGlobals*, int, int, int, const NamedPicking&)’:
layer1/SceneMouse.cpp:513:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
     if (atIndex == LastPicked.src.index)
         ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
layer1/SceneMouse.cpp: In function ‘void SceneClickTransformObject(PyMOLGlobals*, pymol::CObject*, const NamedPicking&, int, bool)’:
layer1/SceneMouse.cpp:455:11: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 237 [-Wformat-truncation=]
           " You clicked %s -> (%s)\n", buffer.c_str(), name ENDFB(G);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~                  ~~~~
In file included from /usr/include/stdio.h:873,
                 from /usr/include/c++/8/cstdio:42,
                 from /usr/include/c++/8/ext/string_conversions.h:43,
                 from /usr/include/c++/8/bits/basic_string.h:6404,
                 from /usr/include/c++/8/string:52,
                 from /usr/include/c++/8/bits/locale_classes.h:40,
                 from /usr/include/c++/8/bits/ios_base.h:41,
                 from /usr/include/c++/8/ios:42,
                 from /usr/include/c++/8/ostream:38,
                 from include/pymol/zstring_view.h:12,
                 from layer1/SceneMouse.h:4,
                 from layer1/SceneMouse.cpp:1:
/usr/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output 21 or more bytes (assuming 276) into a destination of size 255
   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        __glibc_objsize (__s), __fmt,
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        __va_arg_pack ());
        ~~~~~~~~~~~~~~~~~           
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/ScenePicking.cpp -o build/temp.linux-x86_64-3.6/layer1/ScenePicking.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/ScenePicking.cpp: In function ‘void SceneRenderPicking(PyMOLGlobals*, int, int*, int, Picking*, int, int, Multipick*, SceneUnitContext*, GLenum)’:
layer1/ScenePicking.cpp:249:7: warning: ‘previous.Picking::src.Pickable::index’ may be used uninitialized in this function [-Wmaybe-uninitialized]
       if (pik->src.index != previous.src.index ||
       ^~
layer1/ScenePicking.cpp:238:11: note: ‘previous.Picking::src.Pickable::index’ was declared here
   Picking previous;
           ^~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/SceneRay.cpp -o build/temp.linux-x86_64-3.6/layer1/SceneRay.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/SceneRender.cpp -o build/temp.linux-x86_64-3.6/layer1/SceneRender.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/ScrollBar.cpp -o build/temp.linux-x86_64-3.6/layer1/ScrollBar.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/Seq.cpp -o build/temp.linux-x86_64-3.6/layer1/Seq.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Seq.cpp: In function ‘int SeqFindRowCol(PyMOLGlobals*, int, int, int*, int*, int)’:
layer1/Seq.cpp:61:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
         if((char_num >= 0) && (char_num < row->ext_len) && (row->char2col)) {
                                ~~~~~~~~~^~~~~~~~~~~~~~
layer1/Seq.cpp: In member function ‘virtual void CSeq::reshape(int, int)’:
layer1/Seq.cpp:114:28: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
       if(I->Row[a].ext_len > I->Size)
layer1/Seq.cpp: In member function ‘virtual void CSeq::draw(CGO*)’:
layer1/Seq.cpp:392:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
         if(max_len < row->ext_len)
            ~~~~~~~~^~~~~~~~~~~~~~
In file included from layer0/vla.h:7,
                 from layer1/Symmetry.h:26,
                 from layer1/PyMOLObject.h:27,
                 from layer1/Seq.h:21,
                 from layer1/Seq.cpp:22:
layer1/Seq.cpp: In function ‘void SeqFree(PyMOLGlobals*)’:
layer1/Seq.cpp:731:14: warning: deleting object of polymorphic class type ‘CSeq’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   DeleteP(G->Seq);
              ^~~
layer0/MemoryDebug.h:86:39: note: in definition of macro ‘DeleteP’
 #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
                                       ^~~
layer1/Seq.cpp: At global scope:
layer1/Seq.cpp:717:13: warning: ‘void SeqPurgeRowVLA(PyMOLGlobals*)’ defined but not used [-Wunused-function]
 static void SeqPurgeRowVLA(PyMOLGlobals * G)
             ^~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/Setting.cpp -o build/temp.linux-x86_64-3.6/layer1/Setting.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/Control.cpp -o build/temp.linux-x86_64-3.6/layer1/Control.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Setting.cpp: In function ‘void SettingGenerateSideEffects(PyMOLGlobals*, int, const char*, int, int)’:
layer1/Setting.cpp:2070:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
     if (SettingGetGlobal_b(G, cSetting_precomputed_lighting))
     ^~
layer1/Setting.cpp:2072:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
       SceneInvalidate(G);
       ^~~~~~~~~~~~~~~
In file included from layer0/vla.h:7,
                 from layer1/Symmetry.h:26,
                 from layer1/PyMOLObject.h:27,
                 from layer1/Scene.h:22,
                 from layer1/Control.cpp:25:
layer1/Control.cpp: In function ‘void ControlFree(PyMOLGlobals*)’:
layer1/Control.cpp:410:14: warning: deleting object of polymorphic class type ‘CControl’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   DeleteP(G->Control);
              ^~~~~~~
layer0/MemoryDebug.h:86:39: note: in definition of macro ‘DeleteP’
 #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
                                       ^~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/Extrude.cpp -o build/temp.linux-x86_64-3.6/layer1/Extrude.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Extrude.cpp: In function ‘int ExtrudeCGOSurfaceTube(const CExtrude*, CGO*, cCylCap, const float*, bool, int)’:
layer1/Extrude.cpp:875:14: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   int start, stop;
              ^~~~
layer1/Extrude.cpp:875:7: warning: ‘start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   int start, stop;
       ^~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/Font.cpp -o build/temp.linux-x86_64-3.6/layer1/Font.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/FontGLUT.cpp -o build/temp.linux-x86_64-3.6/layer1/FontGLUT.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/FontGLUT8x13.cpp -o build/temp.linux-x86_64-3.6/layer1/FontGLUT8x13.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/FontGLUT9x15.cpp -o build/temp.linux-x86_64-3.6/layer1/FontGLUT9x15.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/Wizard.cpp -o build/temp.linux-x86_64-3.6/layer1/Wizard.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer1/Wizard.cpp: In member function ‘virtual int CWizard::release(int, int, int, int)’:
layer1/Wizard.cpp:571:18: warning: unused variable ‘wiz’ [-Wunused-variable]
         if (auto wiz = WizardGet(G)) {
                  ^~~
layer1/Wizard.cpp: In member function ‘virtual void CWizard::draw(CGO*)’:
layer1/Wizard.cpp:727:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
     else
     ^~~~
layer1/Wizard.cpp:729:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
       drawTopEdge();
       ^~~~~~~~~~~
In file included from layer1/Wizard.cpp:27:
layer1/Wizard.cpp: In function ‘void WizardFree(PyMOLGlobals*)’:
layer1/Wizard.cpp:845:14: warning: deleting object of polymorphic class type ‘CWizard’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   DeleteP(G->Wizard);
              ^~~~~~
layer0/MemoryDebug.h:86:39: note: in definition of macro ‘DeleteP’
 #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
                                       ^~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/AssemblyHelpers.cpp -o build/temp.linux-x86_64-3.6/layer2/AssemblyHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/Shaker.cpp -o build/temp.linux-x86_64-3.6/layer1/Shaker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/AtomInfo.cpp -o build/temp.linux-x86_64-3.6/layer2/AtomInfo.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/SymOp.cpp -o build/temp.linux-x86_64-3.6/layer1/SymOp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/AtomInfo.cpp: In function ‘bool AtomResiFromResv(char*, size_t, int, char)’:
layer2/AtomInfo.cpp:817:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
     return snprintf(resi, size, "%d%c", resv, inscode) < size;
            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
layer2/AtomInfo.cpp:818:43: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   return snprintf(resi, size, "%d", resv) < size;
          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
layer1/SymOp.cpp: In member function ‘std::__cxx11::string pymol::SymOp::to_string() const’:
layer1/SymOp.cpp:37:26: warning: ‘%d’ directive output may be truncated writing between 1 and 4 bytes into a region of size between 0 and 5 [-Wformat-truncation=]
   std::snprintf(code, 8, "%u_%d%d%d", index + 1, x + 5, y + 5, z + 5);
                          ^~~~~~~~~~~
layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132]
layer1/SymOp.cpp:37:26: note: directive argument in the range [-123, 132]
In file included from /usr/include/stdio.h:873,
                 from /usr/include/c++/8/cstdio:42,
                 from /usr/include/c++/8/ext/string_conversions.h:43,
                 from /usr/include/c++/8/bits/basic_string.h:6404,
                 from /usr/include/c++/8/string:52,
                 from layer1/SymOp.h:9,
                 from layer1/SymOp.cpp:7:
/usr/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 6 and 17 bytes into a destination of size 8
   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        __glibc_objsize (__s), __fmt,
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        __va_arg_pack ());
        ~~~~~~~~~~~~~~~~~           
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/SymOpPConv.cpp -o build/temp.linux-x86_64-3.6/layer1/SymOpPConv.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/SymOpTools.cpp -o build/temp.linux-x86_64-3.6/layer1/SymOpTools.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/AtomInfoHistory.cpp -o build/temp.linux-x86_64-3.6/layer2/AtomInfoHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/Symmetry.cpp -o build/temp.linux-x86_64-3.6/layer1/Symmetry.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/Text.cpp -o build/temp.linux-x86_64-3.6/layer1/Text.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/BondTypeHistory.cpp -o build/temp.linux-x86_64-3.6/layer2/BondTypeHistory.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/CifFile.cpp -o build/temp.linux-x86_64-3.6/layer2/CifFile.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/CifMoleculeReader.cpp -o build/temp.linux-x86_64-3.6/layer2/CifMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/CifMoleculeReader.cpp: In member function ‘void seqvec_t::set(int, const char*)’:
layer2/CifMoleculeReader.cpp:108:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     if (i > size())
         ~~^~~~~~~~
layer2/CifMoleculeReader.cpp: In member function ‘const char* seqvec_t::get(int) const’:
layer2/CifMoleculeReader.cpp:114:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     if (i < 1 || i > size())
                  ~~^~~~~~~~
layer2/CifMoleculeReader.cpp: In function ‘CoordSet** read_pdbx_struct_assembly(PyMOLGlobals*, const pymol::cif_data*, const AtomInfoType*, const CoordSet*, const char*)’:
layer2/CifMoleculeReader.cpp:827:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
       while (j < c_src_len * c_it->size()) {
              ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/CoordSet.cpp -o build/temp.linux-x86_64-3.6/layer2/CoordSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/TypeFace.cpp -o build/temp.linux-x86_64-3.6/layer1/TypeFace.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer1/View.cpp -o build/temp.linux-x86_64-3.6/layer1/View.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from /usr/include/c++/8/cassert:44,
                 from layer0/Field.h:24,
                 from layer3/Executive.h:27,
                 from layer2/CoordSet.cpp:54:
layer2/CoordSet.cpp: In member function ‘int CoordSet::atmToIdx(int) const’:
layer2/CoordSet.cpp:134:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   assert(atm < AtmToIdx.size());
          ~~~~^~~~~~~~~~~~~~~~~
layer2/CoordSet.cpp: In member function ‘void CoordSet::updateNonDiscreteAtmToIdx(unsigned int)’:
layer2/CoordSet.cpp:140:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   assert(!Obj || natom == Obj->NAtom);
                  ~~~~~~^~~~~~~~~~~~~
layer2/CoordSet.cpp:145:16: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘unsigned int’ [-Wsign-compare]
     assert(atm < natom);
            ~~~~^~~~~~~
layer2/CoordSet.cpp: In member function ‘int CoordSet::extendIndices(int)’:
layer2/CoordSet.cpp:1572:21: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare]
     assert(NAtIndex <= nAtom);
            ~~~~~~~~~^~~~~~~~
layer2/CoordSet.cpp:1573:18: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare]
     if (NAtIndex < nAtom) {
         ~~~~~~~~~^~~~~~~
layer2/CoordSet.cpp: In function ‘void CoordSetAtomToPDBStrVLA(PyMOLGlobals*, char**, int*, const AtomInfoType*, const float*, int, const PDBInfoRec*, const double*)’:
layer2/CoordSet.cpp:1014:14: warning: ‘char* strncpy(char*, const char*, size_t)’ output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation]
       strncpy(anisoline, "ANISOU", 6);
       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/ObjectVolume.cpp -o build/temp.linux-x86_64-3.6/layer2/ObjectVolume.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/DistSet.cpp -o build/temp.linux-x86_64-3.6/layer2/DistSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectVolume.cpp: In function ‘PyObject* ObjectVolumeAllStatesAsPyList(ObjectVolume*)’:
layer2/ObjectVolume.cpp:127:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(int a = 0; a < I->State.size(); a++) {
                  ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In function ‘int ObjectVolumeAllStatesFromPyList(ObjectVolume*, PyObject*)’:
layer2/ObjectVolume.cpp:248:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(int a = 0; a < I->State.size(); a++) {
                    ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In function ‘int ObjectVolumeInvalidateMapName(ObjectVolume*, const char*, const char*)’:
layer2/ObjectVolume.cpp:313:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(int a = 0; a < I->State.size(); a++) {
                  ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In member function ‘virtual void ObjectVolume::invalidate(cRep_t, cRepInv_t, int)’:
layer2/ObjectVolume.cpp:341:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = 0; a < I->State.size(); a++) {
                ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In member function ‘virtual void ObjectVolume::update()’:
layer2/ObjectVolume.cpp:402:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(int a = 0; a < I->State.size(); a++) {
                  ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp:440:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<float>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
         for (i = 0; i < vs->Ramp.size(); i += 5) {
                     ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In member function ‘virtual void ObjectVolume::render(RenderInfo*)’:
layer2/ObjectVolume.cpp:759:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(a = 0; a < I->State.size(); ++a) {
              ~~^~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In function ‘ObjectVolume* ObjectVolumeFromXtalSym(PyMOLGlobals*, ObjectVolume*, ObjectMap*, CSymmetry*, int, int, float*, float*, float, int, float, float*, int)’:
layer2/ObjectVolume.cpp:1131:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   if(I->State.size() <= state) {
      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectVolume.cpp: In function ‘void ObjectVolumeRecomputeExtent(ObjectVolume*)’:
layer2/ObjectVolume.cpp:1232:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectVolumeState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(int a = 0; a < I->State.size(); a++) {
                  ~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/cassert:44,
                 from layer0/Field.h:24,
                 from layer0/Isosurf.h:24,
                 from layer2/ObjectMap.h:25,
                 from layer2/ObjectVolume.h:20,
                 from layer2/ObjectVolume.cpp:29:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = unsigned char; SizeTs = {int, int, int}]’:
layer0/Field.h:114:12:   required from ‘T& CField::get(SizeTs ...) [with T = unsigned char; SizeTs = {int, int, int}]’
layer2/ObjectVolume.cpp:534:52:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
     assert(sizeof...(pos) <= n_dim());
            ~~~~~~~~~~~~~~~^~~~~~~~~~
layer2/DistSet.cpp: In function ‘int DistSetGetLabelVertex(DistSet*, int, float*)’:
layer2/DistSet.cpp:43:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::array<float, 3> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   if (at >= 0 && at < I->LabCoord.size()) {
                  ~~~^~~~~~~~~~~~~~~~~~~~
layer2/DistSet.cpp: In member function ‘pymol::Result<std::array<float, 3> > DistSet::getLabelOffset(int) const’:
layer2/DistSet.cpp:59:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<LabPosType>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   if (atm < 0 || atm >= this->LabPos.size()) {
                  ~~~~^~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: At global scope:
layer2/ObjectVolume.cpp:657:15: warning: ‘size_t createPreintegrationTexture(PyMOLGlobals*, const float*, int)’ defined but not used [-Wunused-function]
 static size_t createPreintegrationTexture(PyMOLGlobals * G, const float *Table, const int count)
               ^~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectVolume.cpp: In function ‘ObjectMapState* ObjectVolumeStateGetMapState(ObjectVolumeState*)’:
layer2/ObjectVolume.cpp:74:7: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
       "ObjectVolume-Error: map '%s' has been deleted.\n", vs->MapName
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
                 from /usr/include/c++/8/cstdio:42,
                 from /usr/include/c++/8/ext/string_conversions.h:43,
                 from /usr/include/c++/8/bits/basic_string.h:6404,
                 from /usr/include/c++/8/string:52,
                 from /usr/include/c++/8/stdexcept:39,
                 from /usr/include/c++/8/array:39,
                 from /usr/include/c++/8/tuple:39,
                 from /usr/include/c++/8/bits/unique_ptr.h:37,
                 from /usr/include/c++/8/memory:80,
                 from layer0/os_python.h:23,
                 from layer2/ObjectVolume.cpp:20:
/usr/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 46 and 301 bytes into a destination of size 255
   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        __glibc_objsize (__s), __fmt,
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        __va_arg_pack ());
        ~~~~~~~~~~~~~~~~~           
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/GadgetSet.cpp -o build/temp.linux-x86_64-3.6/layer2/GadgetSet.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/HydrogenAdder.cpp -o build/temp.linux-x86_64-3.6/layer2/HydrogenAdder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/RepAngle.cpp -o build/temp.linux-x86_64-3.6/layer2/RepAngle.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/HydrogenAdder.cpp: In function ‘int ObjectMoleculeAddSeleHydrogensRefactored(ObjectMolecule*, int, int)’:
layer2/HydrogenAdder.cpp:283:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare]
   for (unsigned atm = 0; atm < n_atom_old; atm++) {
                          ~~~~^~~~~~~~~~~~
layer2/HydrogenAdder.cpp:301:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare]
   for (unsigned atm = 0; atm < n_atom_old; ++atm) {
                          ~~~~^~~~~~~~~~~~
layer2/HydrogenAdder.cpp:349:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
     for (unsigned idx = 0; idx < cs->NIndex; ++idx) {
                            ~~~~^~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/MmodTyping.cpp -o build/temp.linux-x86_64-3.6/layer2/MmodTyping.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/RepCartoon.cpp -o build/temp.linux-x86_64-3.6/layer2/RepCartoon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/MmtfMoleculeReader.cpp -o build/temp.linux-x86_64-3.6/layer2/MmtfMoleculeReader.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/MmtfMoleculeReader.cpp: In function ‘ObjectMolecule* ObjectMoleculeReadMmtfStr(PyMOLGlobals*, ObjectMolecule*, const char*, int, int, int, int, int, int)’:
layer2/MmtfMoleculeReader.cpp:223:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
         for (int l = 0, offset = atomIndex; l < group->bondAtomListCount / 2; ++l) {
                                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/cassert:44,
                 from layer0/vla.h:10,
                 from layer1/Symmetry.h:26,
                 from layer1/PyMOLObject.h:27,
                 from layer2/ObjectMolecule.h:24,
                 from layer2/MmtfMoleculeReader.cpp:9:
layer2/MmtfMoleculeReader.cpp:276:34: warning: comparison of integer expressions of different signedness: ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
     assert(cset->IdxToAtm.size() == cset->getNIndex());
            ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
layer2/MmtfMoleculeReader.cpp:287:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
   for (int l = 0; l < container->bondAtomListCount / 2; ++l) {
                   ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/RepCartoon.cpp: In function ‘Rep* RepCartoonNew(CoordSet*, int)’:
layer2/RepCartoon.cpp:3731:53: warning: ‘void* memset(void*, int, size_t)’ clearing an object of non-trivial type ‘class CCInOut’; use assignment or value-initialization instead [-Wclass-memaccess]
     memset(car,      0, sizeof(*car)      * nAtIndex);
                                                     ^
layer2/RepCartoon.cpp:44:7: note: ‘class CCInOut’ declared here
 class CCInOut {
       ^~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/Mol2Typing.cpp -o build/temp.linux-x86_64-3.6/layer2/Mol2Typing.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer2/CoordSet.h:24,
                 from layer2/RepCartoon.h:21,
                 from layer2/RepCartoon.cpp:27:
layer1/Setting.h: In function ‘V AtomSettingGetWD(PyMOLGlobals*, T*, int, V) [with V = bool; T = const AtomInfoType]’:
layer1/Setting.h:436:11: warning: ‘out’ is used uninitialized in this function [-Wuninitialized]
   int i = *out;
           ^~~~
In file included from layer2/ObjectMolecule.h:25,
                 from layer2/CoordSet.h:25,
                 from layer2/RepCartoon.h:21,
                 from layer2/RepCartoon.cpp:27:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
   V out;
     ^~~
layer2/RepCartoon.cpp: In function ‘int GenerateRepCartoonProcessCylindricalHelices(PyMOLGlobals*, ObjectMolecule*, CoordSet*, CGO*, CExtrude*, int, int*, float*, float*, float*, const CCInOut*, int*, float*, int, int, float, float)’:
layer2/RepCartoon.cpp:1593:20: warning: ‘atom_index2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   int atom_index1, atom_index2, *s,
                    ^~~~~~~~~~~
layer2/RepCartoon.cpp: In function ‘void do_ring(PyMOLGlobals*, nuc_acid_data*, int, int*, ObjectMolecule*, CoordSet*, float, CGO*, int, float, int, int, int, float, float, int*, float*, float)’:
layer2/RepCartoon.cpp:1007:65: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
                     float ladder_alpha = 1.0f - AtomSettingGetWD(G, ai_i[i], cSetting_cartoon_transparency, 1.0f - alpha);
                                                 ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/MolV3000.cpp -o build/temp.linux-x86_64-3.6/layer2/MolV3000.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/ObjectAlignment.cpp -o build/temp.linux-x86_64-3.6/layer2/ObjectAlignment.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/RepCylBond.cpp -o build/temp.linux-x86_64-3.6/layer2/RepCylBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer0/Map.h:24,
                 from layer1/Basis.h:20,
                 from layer1/Ray.h:24,
                 from layer1/PyMOLObject.h:24,
                 from layer2/ObjectAlignment.h:22,
                 from layer2/ObjectAlignment.cpp:27:
layer0/Vector.h: In member function ‘virtual void ObjectAlignment::update()’:
layer0/Vector.h:322:3: warning: ‘*((void*)& gvert +8)’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   dst[2] = src[2];
   ^~~
layer2/ObjectAlignment.cpp:926:39: note: ‘*((void*)& gvert +8)’ was declared here
               float mean[3], vert[3], gvert[3];
                                       ^~~~~
In file included from layer0/Map.h:24,
                 from layer1/Basis.h:20,
                 from layer1/Ray.h:24,
                 from layer1/PyMOLObject.h:24,
                 from layer2/ObjectAlignment.h:22,
                 from layer2/ObjectAlignment.cpp:27:
layer0/Vector.h:321:3: warning: ‘*((void*)& gvert +4)’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   dst[1] = src[1];
   ^~~
layer2/ObjectAlignment.cpp:926:39: note: ‘*((void*)& gvert +4)’ was declared here
               float mean[3], vert[3], gvert[3];
                                       ^~~~~
In file included from layer0/Map.h:24,
                 from layer1/Basis.h:20,
                 from layer1/Ray.h:24,
                 from layer1/PyMOLObject.h:24,
                 from layer2/ObjectAlignment.h:22,
                 from layer2/ObjectAlignment.cpp:27:
layer0/Vector.h:320:3: warning: ‘gvert’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   dst[0] = src[0];
   ^~~
layer2/ObjectAlignment.cpp:926:39: note: ‘gvert’ was declared here
               float mean[3], vert[3], gvert[3];
                                       ^~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/ObjectCGO.cpp -o build/temp.linux-x86_64-3.6/layer2/ObjectCGO.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/RepDihedral.cpp -o build/temp.linux-x86_64-3.6/layer2/RepDihedral.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectCGO.cpp: In function ‘PyObject* ObjectCGOAllStatesAsPyList(ObjectCGO*)’:
layer2/ObjectCGO.cpp:53:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(a = 0; a < I->State.size(); a++) {
              ~~^~~~~~~~~~~~~~~~~
layer2/ObjectCGO.cpp: In function ‘int ObjectCGOAllStatesFromPyList(ObjectCGO*, PyObject*, int)’:
layer2/ObjectCGO.cpp:104:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = 0; a < I->State.size(); a++) {
                ~~^~~~~~~~~~~~~~~~~
layer2/ObjectCGO.cpp: In member function ‘virtual void ObjectCGO::invalidate(cRep_t, cRepInv_t, int)’:
layer2/ObjectCGO.cpp:205:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     if((state >= 0) && (state < I->State.size())) {
                         ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectCGO.cpp: In member function ‘virtual void ObjectCGO::render(RenderInfo*)’:
layer2/ObjectCGO.cpp:488:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
         if (!ray)
         ^~
layer2/ObjectCGO.cpp:490:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
           ObjectCGORenderState(G, pass, ray, I, info, sobj, color, ramp, use_shader, cgo_lighting);
           ^~~~~~~~~~~~~~~~~~~~
In file included from layer2/ObjectCGO.cpp:24:
layer2/ObjectCGO.h: In copy constructor ‘ObjectCGOState::ObjectCGOState(const ObjectCGOState&)’:
layer2/ObjectCGO.h:28:17: warning: ‘ObjectCGOState::G’ will be initialized after [-Wreorder]
   PyMOLGlobals* G;
                 ^
layer2/ObjectCGO.h:27:25: warning:   ‘pymol::cache_ptr<CGO> ObjectCGOState::renderCGO’ [-Wreorder]
   pymol::cache_ptr<CGO> renderCGO;
                         ^~~~~~~~~
layer2/ObjectCGO.cpp:517:1: warning:   when initialized here [-Wreorder]
 ObjectCGOState::ObjectCGOState(const ObjectCGOState& other)
 ^~~~~~~~~~~~~~
In file included from layer2/ObjectCGO.cpp:24:
layer2/ObjectCGO.h:29:58: warning: ‘ObjectCGOState::hasOpaque’ will be initialized after [-Wreorder]
   bool renderWithShaders, hasTransparency, cgo_lighting, hasOpaque;
                                                          ^~~~~~~~~
layer2/ObjectCGO.h:29:44: warning:   ‘bool ObjectCGOState::cgo_lighting’ [-Wreorder]
   bool renderWithShaders, hasTransparency, cgo_lighting, hasOpaque;
                                            ^~~~~~~~~~~~
layer2/ObjectCGO.cpp:517:1: warning:   when initialized here [-Wreorder]
 ObjectCGOState::ObjectCGOState(const ObjectCGOState& other)
 ^~~~~~~~~~~~~~
layer2/ObjectCGO.cpp: In function ‘ObjectCGO* ObjectCGOFromCGO(PyMOLGlobals*, ObjectCGO*, CGO*, int)’:
layer2/ObjectCGO.cpp:602:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   if(I->State.size() <= state) {
      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectCGO.cpp: In function ‘ObjectCGO* ObjectCGODefine(PyMOLGlobals*, ObjectCGO*, PyObject*, int)’:
layer2/ObjectCGO.cpp:667:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   if(I->State.size() <= state) {
      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectCGO.cpp: In function ‘ObjectCGO* ObjectCGOFromFloatArray(PyMOLGlobals*, ObjectCGO*, float*, int, int, int)’:
layer2/ObjectCGO.cpp:725:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectCGOState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   if(I->State.size() <= state) {
      ~~~~~~~~~~~~~~~~^~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/ObjectCallback.cpp -o build/temp.linux-x86_64-3.6/layer2/ObjectCallback.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/RepDistDash.cpp -o build/temp.linux-x86_64-3.6/layer2/RepDistDash.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/ObjectDist.cpp -o build/temp.linux-x86_64-3.6/layer2/ObjectDist.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/RepDistLabel.cpp -o build/temp.linux-x86_64-3.6/layer2/RepDistLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectDist.cpp: In function ‘int ObjectDistMoveWithObject(ObjectDist*, ObjectMolecule*)’:
layer2/ObjectDist.cpp:111:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for (int i=0; i<I->DSet.size(); i++) {
                 ~^~~~~~~~~~~~~~~
layer2/ObjectDist.cpp: In function ‘void ObjectDistUpdateExtents(ObjectDist*)’:
layer2/ObjectDist.cpp:136:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(int a = 0; a < I->DSet.size(); a++) {
                  ~~^~~~~~~~~~~~~~~~
layer2/ObjectDist.cpp: In function ‘PyObject* ObjectDistDSetAsPyList(ObjectDist*)’:
layer2/ObjectDist.cpp:148:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(int a = 0; a < I->DSet.size(); a++) {
                  ~~^~~~~~~~~~~~~~~~
layer2/ObjectDist.cpp: In function ‘int ObjectDistDSetFromPyList(ObjectDist*, PyObject*)’:
layer2/ObjectDist.cpp:165:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(int a = 0; a < I->DSet.size(); a++) {
                    ~~^~~~~~~~~~~~~~~~
layer2/ObjectDist.cpp: In member function ‘virtual void ObjectDist::update()’:
layer2/ObjectDist.cpp:241:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(int a = 0; a < I->DSet.size(); a++)
                  ~~^~~~~~~~~~~~~~~~
layer2/ObjectDist.cpp: In function ‘void ObjectDistInvalidateRep(ObjectDist*, cRep_t)’:
layer2/ObjectDist.cpp:257:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<pymol::copyable_ptr<DistSet> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(a = 0; a < I->DSet.size(); a++)
              ~~^~~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/RepDot.cpp -o build/temp.linux-x86_64-3.6/layer2/RepDot.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/ObjectGadget.cpp -o build/temp.linux-x86_64-3.6/layer2/ObjectGadget.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/RepDot.cpp: In function ‘Rep* RepDotDoNew(CoordSet*, cRepDot_t, int)’:
layer2/RepDot.cpp:463:46: warning: ‘vn’ may be used uninitialized in this function [-Wmaybe-uninitialized]
     I->VN = ReallocForSure(I->VN, float, (vn - I->VN));
                                              ^
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/RepEllipsoid.cpp -o build/temp.linux-x86_64-3.6/layer2/RepEllipsoid.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/ObjectGadgetRamp.cpp -o build/temp.linux-x86_64-3.6/layer2/ObjectGadgetRamp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/RepLabel.cpp -o build/temp.linux-x86_64-3.6/layer2/RepLabel.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/ObjectGroup.cpp -o build/temp.linux-x86_64-3.6/layer2/ObjectGroup.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/ObjectMap.cpp -o build/temp.linux-x86_64-3.6/layer2/ObjectMap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/RepMesh.cpp -o build/temp.linux-x86_64-3.6/layer2/RepMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMap.cpp: In function ‘int ObjectMapValidXtal(ObjectMap*, int)’:
layer2/ObjectMap.cpp:133:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   if((state >= 0) && (state < I->State.size())) {
                       ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘pymol::Result<> ObjectMapTrim(ObjectMap*, int, float*, float*, int)’:
layer2/ObjectMap.cpp:914:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   } else if((state >= 0) && (state < I->State.size()) && (I->State[state].Active)) {
                              ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘pymol::Result<> ObjectMapDouble(ObjectMap*, int)’:
layer2/ObjectMap.cpp:931:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   } else if((state >= 0) && (state < I->State.size()) && (I->State[state].Active)) {
                              ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘pymol::Result<> ObjectMapHalve(ObjectMap*, int, int)’:
layer2/ObjectMap.cpp:946:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   } else if((state >= 0) && (state < I->State.size()) && (I->State[state].Active)) {
                              ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘void ObjectMapRegeneratePoints(ObjectMap*)’:
layer2/ObjectMap.cpp:1189:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for (i=0; i<om->State.size();i++){
             ~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘PyObject* ObjectMapAllStatesAsPyList(ObjectMap*)’:
layer2/ObjectMap.cpp:1279:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(a = 0; a < I->State.size(); a++) {
              ~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapAllStatesFromPyList(ObjectMap*, PyObject*)’:
layer2/ObjectMap.cpp:1437:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = 0; a < I->State.size(); a++) {
                ~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapNewCopy(PyMOLGlobals*, const ObjectMap*, ObjectMap**, int, int)’:
layer2/ObjectMap.cpp:1509:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
       for(state = 0; state < src->State.size(); state++) {
                      ~~~~~~^~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:1518:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
       if(source_state < src->State.size()) {
          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMapState* ObjectMapStatePrime(ObjectMap*, int)’:
layer2/ObjectMap.cpp:1535:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   if(I->State.size() <= state) {
      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘void ObjectMapUpdateExtents(ObjectMap*)’:
layer2/ObjectMap.cpp:1548:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(a = 0; a < I->State.size(); a++) {
              ~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In member function ‘virtual void ObjectMap::invalidate(cRep_t, cRepInv_t, int)’:
layer2/ObjectMap.cpp:1674:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = 0; a < I->State.size(); a++) {
                ~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapCCP4StrToMap(ObjectMap*, char*, int, int, int, int)’:
layer2/ObjectMap.cpp:2297:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
   if(bytes < 256 * sizeof(int)) {
      ~~~~~~^~~~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp:2307:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   if(I->State.size() <= state) {
      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapPHIStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:2942:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   if(I->State.size() <= state) {
      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapXPLORStrToMap(ObjectMap*, char*, int, int)’:
layer2/ObjectMap.cpp:3216:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   if(I->State.size() <= state) {
      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapFLDStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:3437:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   if(I->State.size() <= state) {
      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapBRIXStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:3766:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   if(I->State.size() <= state) {
      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:4172:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   if(I->State.size() <= state) {
      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadCCP4(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int, int)’:
layer2/ObjectMap.cpp:4694:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
       if(state < I->State.size()) {
          ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘int ObjectMapACNTStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:5245:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   if(I->State.size() <= state) {
      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadXPLOR(PyMOLGlobals*, ObjectMap*, const char*, int, int, int)’:
layer2/ObjectMap.cpp:5557:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
         if(state < I->State.size()) {
            ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadChemPyBrick(PyMOLGlobals*, ObjectMap*, PyObject*, int, int, int)’:
layer2/ObjectMap.cpp:5711:24: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
     if(I->State.size() <= state) {
        ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadChemPyMap(PyMOLGlobals*, ObjectMap*, PyObject*, int, int, int)’:
layer2/ObjectMap.cpp:5809:24: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
     if(I->State.size() <= state) {
        ~~~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/c++/8/cassert:44,
                 from layer0/Field.h:24,
                 from layer0/Isosurf.h:24,
                 from layer2/ObjectMap.h:25,
                 from layer2/ObjectMap.cpp:27:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int, int}]’:
layer2/ObjectMap.cpp:198:30:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
     assert(sizeof...(pos) <= n_dim());
            ~~~~~~~~~~~~~~~^~~~~~~~~~
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer2/ObjectMap.cpp:1605:14:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’:
layer0/Field.h:114:12:   required from ‘T& CField::get(SizeTs ...) [with T = int; SizeTs = {int, int, int}]’
layer2/ObjectMap.cpp:5967:57:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
In file included from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:27,
                 from /usr/lib64/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from layer0/os_numpy.h:8,
                 from layer2/ObjectMap.cpp:22:
/usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h: At global scope:
/usr/lib64/python3.6/site-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘int _import_array()’ defined but not used [-Wunused-function]
 _import_array(void)
 ^~~~~~~~~~~~~
In file included from /usr/include/c++/8/cassert:44,
                 from layer0/Field.h:24,
                 from layer0/Isosurf.h:24,
                 from layer2/RepMesh.cpp:28:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer2/RepMesh.cpp:970:27:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
     assert(sizeof...(pos) <= n_dim());
            ~~~~~~~~~~~~~~~^~~~~~~~~~
layer2/RepMesh.cpp: In function ‘Rep* RepMeshNew(CoordSet*, int)’:
layer2/RepMesh.cpp:1053:13: warning: ‘field’ may be used uninitialized in this function [-Wmaybe-uninitialized]
     DeleteP(field);
             ^~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/RepNonbonded.cpp -o build/temp.linux-x86_64-3.6/layer2/RepNonbonded.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMap.cpp: In function ‘void ObjectMapDump(const ObjectMap*, const char*, int, int)’:
layer2/ObjectMap.cpp:5982:7: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 239 [-Wformat-truncation=]
       " ObjectMapDump: %s written to %s\n", om->Name, fname ENDFB(om->G);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
                 from /usr/include/c++/8/cstdio:42,
                 from /usr/include/c++/8/ext/string_conversions.h:43,
                 from /usr/include/c++/8/bits/basic_string.h:6404,
                 from /usr/include/c++/8/string:52,
                 from /usr/include/c++/8/stdexcept:39,
                 from /usr/include/c++/8/array:39,
                 from /usr/include/c++/8/tuple:39,
                 from /usr/include/c++/8/bits/unique_ptr.h:37,
                 from /usr/include/c++/8/memory:80,
                 from layer0/os_python.h:23,
                 from layer2/ObjectMap.cpp:21:
/usr/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output 30 or more bytes (assuming 285) into a destination of size 255
   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        __glibc_objsize (__s), __fmt,
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        __va_arg_pack ());
        ~~~~~~~~~~~~~~~~~           
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/RepNonbondedSphere.cpp -o build/temp.linux-x86_64-3.6/layer2/RepNonbondedSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMap.cpp: In function ‘ObjectMap* ObjectMapLoadPHI(PyMOLGlobals*, ObjectMap*, const char*, int, int, int, int)’:
layer2/ObjectMap.cpp:2961:7: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
       " PHIStrToMap: %s\n", cc ENDFB(I->G);
       ^~~~~~~~~~~~~~~~~~~~  ~~
In file included from /usr/include/stdio.h:873,
                 from /usr/include/c++/8/cstdio:42,
                 from /usr/include/c++/8/ext/string_conversions.h:43,
                 from /usr/include/c++/8/bits/basic_string.h:6404,
                 from /usr/include/c++/8/string:52,
                 from /usr/include/c++/8/stdexcept:39,
                 from /usr/include/c++/8/array:39,
                 from /usr/include/c++/8/tuple:39,
                 from /usr/include/c++/8/bits/unique_ptr.h:37,
                 from /usr/include/c++/8/memory:80,
                 from layer0/os_python.h:23,
                 from layer2/ObjectMap.cpp:21:
/usr/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        __glibc_objsize (__s), __fmt,
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        __va_arg_pack ());
        ~~~~~~~~~~~~~~~~~           
layer2/ObjectMap.cpp:2970:7: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
       " PHIStrToMap: %s\n", cc ENDFB(I->G);
       ^~~~~~~~~~~~~~~~~~~~  ~~
In file included from /usr/include/stdio.h:873,
                 from /usr/include/c++/8/cstdio:42,
                 from /usr/include/c++/8/ext/string_conversions.h:43,
                 from /usr/include/c++/8/bits/basic_string.h:6404,
                 from /usr/include/c++/8/string:52,
                 from /usr/include/c++/8/stdexcept:39,
                 from /usr/include/c++/8/array:39,
                 from /usr/include/c++/8/tuple:39,
                 from /usr/include/c++/8/bits/unique_ptr.h:37,
                 from /usr/include/c++/8/memory:80,
                 from layer0/os_python.h:23,
                 from layer2/ObjectMap.cpp:21:
/usr/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        __glibc_objsize (__s), __fmt,
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        __va_arg_pack ());
        ~~~~~~~~~~~~~~~~~           
layer2/ObjectMap.cpp:2976:7: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
       " PHIStrToMap: %s\n", cc ENDFB(I->G);
       ^~~~~~~~~~~~~~~~~~~~  ~~
In file included from /usr/include/stdio.h:873,
                 from /usr/include/c++/8/cstdio:42,
                 from /usr/include/c++/8/ext/string_conversions.h:43,
                 from /usr/include/c++/8/bits/basic_string.h:6404,
                 from /usr/include/c++/8/string:52,
                 from /usr/include/c++/8/stdexcept:39,
                 from /usr/include/c++/8/array:39,
                 from /usr/include/c++/8/tuple:39,
                 from /usr/include/c++/8/bits/unique_ptr.h:37,
                 from /usr/include/c++/8/memory:80,
                 from layer0/os_python.h:23,
                 from layer2/ObjectMap.cpp:21:
/usr/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        __glibc_objsize (__s), __fmt,
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        __va_arg_pack ());
        ~~~~~~~~~~~~~~~~~           
layer2/ObjectMap.cpp:3058:7: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 241 [-Wformat-truncation=]
       " PHIStrToMap: %s\n", cc ENDFB(I->G);
       ^~~~~~~~~~~~~~~~~~~~  ~~
In file included from /usr/include/stdio.h:873,
                 from /usr/include/c++/8/cstdio:42,
                 from /usr/include/c++/8/ext/string_conversions.h:43,
                 from /usr/include/c++/8/bits/basic_string.h:6404,
                 from /usr/include/c++/8/string:52,
                 from /usr/include/c++/8/stdexcept:39,
                 from /usr/include/c++/8/array:39,
                 from /usr/include/c++/8/tuple:39,
                 from /usr/include/c++/8/bits/unique_ptr.h:37,
                 from /usr/include/c++/8/memory:80,
                 from layer0/os_python.h:23,
                 from layer2/ObjectMap.cpp:21:
/usr/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 16 and 1039 bytes into a destination of size 255
   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        __glibc_objsize (__s), __fmt,
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        __va_arg_pack ());
        ~~~~~~~~~~~~~~~~~           
layer2/ObjectMap.cpp: In function ‘int ObjectMapGRDStrToMap(ObjectMap*, char*, int, int, int)’:
layer2/ObjectMap.cpp:4290:5: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
     " ObjectMap: %s\n", cc ENDFB(I->G);
     ^~~~~~~~~~~~~~~~~~  ~~
In file included from /usr/include/stdio.h:873,
                 from /usr/include/c++/8/cstdio:42,
                 from /usr/include/c++/8/ext/string_conversions.h:43,
                 from /usr/include/c++/8/bits/basic_string.h:6404,
                 from /usr/include/c++/8/string:52,
                 from /usr/include/c++/8/stdexcept:39,
                 from /usr/include/c++/8/array:39,
                 from /usr/include/c++/8/tuple:39,
                 from /usr/include/c++/8/bits/unique_ptr.h:37,
                 from /usr/include/c++/8/memory:80,
                 from layer0/os_python.h:23,
                 from layer2/ObjectMap.cpp:21:
/usr/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 14 and 1037 bytes into a destination of size 255
   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        __glibc_objsize (__s), __fmt,
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        __va_arg_pack ());
        ~~~~~~~~~~~~~~~~~           
layer2/ObjectMap.cpp:4290:5: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 243 [-Wformat-truncation=]
     " ObjectMap: %s\n", cc ENDFB(I->G);
     ^~~~~~~~~~~~~~~~~~  ~~
In file included from /usr/include/stdio.h:873,
                 from /usr/include/c++/8/cstdio:42,
                 from /usr/include/c++/8/ext/string_conversions.h:43,
                 from /usr/include/c++/8/bits/basic_string.h:6404,
                 from /usr/include/c++/8/string:52,
                 from /usr/include/c++/8/stdexcept:39,
                 from /usr/include/c++/8/array:39,
                 from /usr/include/c++/8/tuple:39,
                 from /usr/include/c++/8/bits/unique_ptr.h:37,
                 from /usr/include/c++/8/memory:80,
                 from layer0/os_python.h:23,
                 from layer2/ObjectMap.cpp:21:
/usr/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 14 and 1037 bytes into a destination of size 255
   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        __glibc_objsize (__s), __fmt,
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        __va_arg_pack ());
        ~~~~~~~~~~~~~~~~~           
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/RepRibbon.cpp -o build/temp.linux-x86_64-3.6/layer2/RepRibbon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/ObjectMesh.cpp -o build/temp.linux-x86_64-3.6/layer2/ObjectMesh.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/RepSphere.cpp -o build/temp.linux-x86_64-3.6/layer2/RepSphere.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMesh.cpp: In function ‘void ObjectMeshDump(ObjectMesh*, const char*, int, int)’:
layer2/ObjectMesh.cpp:329:9: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
         " ObjectMeshDump: %s written to %s\n", I->Name, fname ENDFB(I->G);
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
                 from layer1/Scene.h:23,
                 from layer2/ObjectMesh.cpp:33:
layer0/Feedback.h:274:15: note: ‘snprintf’ output 31 or more bytes (assuming 286) into a destination of size 255
     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
               ^
layer2/ObjectMesh.cpp:328:7: note: in expansion of macro ‘PRINTFB’
       PRINTFB(I->G, FB_ObjectMesh, FB_Actions)
       ^~~~~~~
layer2/ObjectMesh.cpp: In member function ‘virtual void ObjectMesh::update()’:
layer2/ObjectMesh.cpp:502:11: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 226 [-Wformat-truncation=]
           "ObjectMeshUpdate-Error: map '%s' has been deleted.\n", ms->MapName
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
                 from layer1/Scene.h:23,
                 from layer2/ObjectMesh.cpp:33:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 50 and 305 bytes into a destination of size 255
     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
               ^
layer2/ObjectMesh.cpp:501:9: note: in expansion of macro ‘PRINTFB’
         PRINTFB(I->G, FB_ObjectMesh, FB_Errors)
         ^~~~~~~
layer2/ObjectMesh.cpp:535:15: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 232 [-Wformat-truncation=]
               " ObjectMesh: updating \"%s\".\n", I->Name ENDFB(G);
               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
                 from layer1/Scene.h:23,
                 from layer2/ObjectMesh.cpp:33:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 27 and 282 bytes into a destination of size 255
     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
               ^
layer2/ObjectMesh.cpp:534:13: note: in expansion of macro ‘PRINTFB’
             PRINTFB(G, FB_ObjectMesh, FB_Details)
             ^~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/RepSphereGenerate.cpp -o build/temp.linux-x86_64-3.6/layer2/RepSphereGenerate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/ObjectMolecule.cpp -o build/temp.linux-x86_64-3.6/layer2/ObjectMolecule.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/RepSphereImmediate.cpp -o build/temp.linux-x86_64-3.6/layer2/RepSphereImmediate.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMolecule.cpp: In function ‘int ObjectMoleculeFillOpenValences(ObjectMolecule*, int)’:
layer2/ObjectMolecule.cpp:3531:14: warning: comparison of integer expressions of different signedness: ‘const unsigned int’ and ‘signed char’ [-Wsign-compare]
       if((nn >= ai->valence) || (!flag))
           ~~~^~~~~~~~~~~~~~
layer2/ObjectMolecule.cpp: In function ‘pymol::Result<> ObjectMoleculeAddBondByIndices(ObjectMolecule*, unsigned int, unsigned int, int)’:
layer2/ObjectMolecule.cpp:4328:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   if (atm1 >= I->NAtom || atm2 >= I->NAtom) {
       ~~~~~^~~~~~~~~~~
layer2/ObjectMolecule.cpp:4328:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   if (atm1 >= I->NAtom || atm2 >= I->NAtom) {
                           ~~~~~^~~~~~~~~~~
layer2/ObjectMolecule.cpp: In member function ‘bool ObjectMolecule::atomHasAnyCoordinates(size_t) const’:
layer2/ObjectMolecule.cpp:11713:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
   for (size_t i = 0; i < NCSet; ++i) {
                      ~~^~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/RepSurface.cpp -o build/temp.linux-x86_64-3.6/layer2/RepSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMolecule.cpp: In function ‘const char* findflag(PyMOLGlobals*, const char*, const char*, const char*)’:
layer2/ObjectMolecule.cpp:1417:9: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 194 [-Wformat-truncation=]
         " ObjectMolecule-Error: Unrecognized file format (can't find \"%s\").\n", pat
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  ~~~
In file included from layer1/Ortho.h:32,
                 from layer2/ObjectMolecule.cpp:31:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 66 and 1089 bytes into a destination of size 255
     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
               ^
layer2/ObjectMolecule.cpp:1416:7: note: in expansion of macro ‘PRINTFB’
       PRINTFB(G, FB_ObjectMolecule, FB_Errors)
       ^~~~~~~
layer2/ObjectMolecule.cpp:1435:9: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 194 [-Wformat-truncation=]
         " ObjectMolecule-Error: Unrecognized file format (can't find \"%s\").\n", pat
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  ~~~
In file included from layer1/Ortho.h:32,
                 from layer2/ObjectMolecule.cpp:31:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 66 and 1089 bytes into a destination of size 255
     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
               ^
layer2/ObjectMolecule.cpp:1434:7: note: in expansion of macro ‘PRINTFB’
       PRINTFB(G, FB_ObjectMolecule, FB_Errors)
       ^~~~~~~
layer2/ObjectMolecule.cpp: In function ‘CoordSet* ObjectMoleculeMOLStr2CoordSet(PyMOLGlobals*, const char*, AtomInfoType**, const char**)’:
layer2/ObjectMolecule.cpp:7579:5: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 224 [-Wformat-truncation=]
     " ObjMolMOLStr2CoordSet: title '%s'\n", nameTmp ENDFB(G)
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  ~~~~~~~
In file included from layer1/Ortho.h:32,
                 from layer2/ObjectMolecule.cpp:31:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 34 and 289 bytes into a destination of size 255
     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
               ^
layer2/ObjectMolecule.cpp:7578:3: note: in expansion of macro ‘PRINTFB’
   PRINTFB(G, FB_ObjectMolecule, FB_Blather)
   ^~~~~~~
layer2/ObjectMolecule.cpp:7627:16: warning: ‘char* strncpy(char*, const char*, size_t)’ output may be truncated copying 4 bytes from a string of length 1023 [-Wstringop-truncation]
         strncpy(atInfo[a].elem, cc, cElemNameLen);
         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMolecule.cpp: In function ‘CoordSet* ObjectMoleculeXYZStr2CoordSet(PyMOLGlobals*, const char*, AtomInfoType**, const char**)’:
layer2/ObjectMolecule.cpp:2898:16: warning: ‘char* strncpy(char*, const char*, size_t)’ output may be truncated copying 4 bytes from a string of length 1023 [-Wstringop-truncation]
         strncpy(ai->elem, cc, cElemNameLen);
         ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/RepSurface.cpp: In function ‘void RepSurfaceSmoothEdges(RepSurface*)’:
layer2/RepSurface.cpp:4403:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for (auto j = 0; j < edges[i].size(); j += 3) {
                      ~~^~~~~~~~~~~~~~~~~
layer2/RepSurface.cpp:4415:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for (auto j = 0; j < edges[i].size(); j += 3) {
                      ~~^~~~~~~~~~~~~~~~~
layer2/RepSurface.cpp:4426:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for (auto i = 0; i < unique_edges.size(); i += 2) {
                      ~~^~~~~~~~~~~~~~~~~~~~~
layer2/ObjectMolecule.cpp: In member function ‘virtual void ObjectMolecule::update()’:
layer2/ObjectMolecule.cpp:10605:15: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 181 and 191 [-Wformat-truncation=]
               " ObjectMolecule-DEBUG: updating representations for state %d of \"%s\".\n",
               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
                 from layer2/ObjectMolecule.cpp:31:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 68 and 333 bytes into a destination of size 255
     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
               ^
layer2/ObjectMolecule.cpp:10604:13: note: in expansion of macro ‘PRINTFB’
             PRINTFB(G, FB_ObjectMolecule, FB_Blather)
             ^~~~~~~
layer2/ObjectMolecule.cpp: In function ‘int ObjectMoleculeMoveAtom(ObjectMolecule*, int, int, const float*, int, int)’:
layer2/ObjectMolecule.cpp:10731:21: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=]
       sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
               buffer, v[0], v[1], v[2], state + 1, mode, 0);
               ~~~~~~ 
layer2/ObjectMolecule.cpp:10731:21: note: directive argument in the range [-2147483647, 2147483647]
layer2/ObjectMolecule.cpp:10731:14: note: ‘sprintf’ output between 78 and 2036 bytes into a destination of size 1024
       sprintf(line, "cmd.translate_atom(\"%s\",%15.9f,%15.9f,%15.9f,%d,%d,%d)\n",
       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
               buffer, v[0], v[1], v[2], state + 1, mode, 0);
               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/RepWireBond.cpp -o build/temp.linux-x86_64-3.6/layer2/RepWireBond.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/Sculpt.cpp -o build/temp.linux-x86_64-3.6/layer2/Sculpt.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/ObjectMolecule2.cpp -o build/temp.linux-x86_64-3.6/layer2/ObjectMolecule2.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMolecule2.cpp: In function ‘bool ObjectMoleculeConnect(ObjectMolecule*, int&, pymol::vla<BondType>&, CoordSet*, int, int, bool)’:
layer2/ObjectMolecule2.cpp:3750:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
     for (unsigned i = 0; i < cs->NIndex; ++i) {
                          ~~^~~~~~~~~~~~
layer2/ObjectMolecule2.cpp: In lambda function:
layer2/ObjectMolecule2.cpp:3779:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare]
         if (i <= j && !symop)
             ~~^~~~
layer2/ObjectMolecule2.cpp: In function ‘bool ObjectMoleculeConnect(ObjectMolecule*, int&, pymol::vla<BondType>&, CoordSet*, int, int, bool)’:
layer2/ObjectMolecule2.cpp:3884:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
       for (unsigned i = 0; i < cs->NIndex; ++i) {
                            ~~^~~~~~~~~~~~
layer2/ObjectMolecule2.cpp:3900:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
     for (unsigned a = 0; a < cs->NTmpBond; ++a) {
                          ~~^~~~~~~~~~~~~~
layer2/ObjectMolecule2.cpp:3950:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
     for (unsigned a = 0; a < cs->NTmpLinkBond; ++a) {
                          ~~^~~~~~~~~~~~~~~~~~
layer2/ObjectMolecule2.cpp: In function ‘int ObjectMoleculeAddPseudoatom(ObjectMolecule*, int, const char*, const char*, const char*, const char*, const char*, const char*, float, int, float, float, const char*, const float*, int, int, int, int)’:
layer2/ObjectMolecule2.cpp:335:9: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 238 [-Wformat-truncation=]
         " ObjMol: created %s/%s/%s/%s`%d%c/%s\n",
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
                 from /usr/include/c++/8/cstdio:42,
                 from /usr/include/c++/8/ext/string_conversions.h:43,
                 from /usr/include/c++/8/bits/basic_string.h:6404,
                 from /usr/include/c++/8/string:52,
                 from /usr/include/c++/8/stdexcept:39,
                 from /usr/include/c++/8/array:39,
                 from /usr/include/c++/8/tuple:39,
                 from /usr/include/c++/8/bits/unique_ptr.h:37,
                 from /usr/include/c++/8/memory:80,
                 from layer0/os_python.h:23,
                 from layer2/ObjectMolecule2.cpp:24:
/usr/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output 26 or more bytes (assuming 281) into a destination of size 255
   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        __glibc_objsize (__s), __fmt,
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        __va_arg_pack ());
        ~~~~~~~~~~~~~~~~~           
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/SculptCache.cpp -o build/temp.linux-x86_64-3.6/layer2/SculptCache.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/SideChainHelper.cpp -o build/temp.linux-x86_64-3.6/layer2/SideChainHelper.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer1/PyMOLObject.h:26,
                 from layer2/ObjectMolecule.h:24,
                 from layer2/SideChainHelper.h:9,
                 from layer2/SideChainHelper.cpp:10:
layer1/Setting.h: In function ‘V AtomSettingGetWD(PyMOLGlobals*, T*, int, V) [with V = bool; T = const AtomInfoType]’:
layer1/Setting.h:436:11: warning: ‘out’ is used uninitialized in this function [-Wuninitialized]
   int i = *out;
           ^~~~
In file included from layer2/ObjectMolecule.h:25,
                 from layer2/SideChainHelper.h:9,
                 from layer2/SideChainHelper.cpp:10:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
   V out;
     ^~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/VFont.cpp -o build/temp.linux-x86_64-3.6/layer2/VFont.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/ObjectMolecule3.cpp -o build/temp.linux-x86_64-3.6/layer2/ObjectMolecule3.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectMolecule3.cpp: In function ‘std::vector<int> ObjectMoleculeGetMolMappingVec(const ObjectMolecule&)’:
layer2/ObjectMolecule3.cpp:42:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare]
   for (size_t b = 0; b < objmol.NBond; ++b) {
                      ~~^~~~~~~~~~~~~~
layer2/ObjectMolecule3.cpp: In function ‘void ObjectMoleculePBCUnwrap(ObjectMolecule&, bool)’:
layer2/ObjectMolecule3.cpp:151:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
       for (unsigned atm = 0; atm != objmol.NAtom; ++atm) {
                              ~~~~^~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer3/AtomIterators.cpp -o build/temp.linux-x86_64-3.6/layer3/AtomIterators.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/ObjectSlice.cpp -o build/temp.linux-x86_64-3.6/layer2/ObjectSlice.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/AtomIterators.cpp: In member function ‘virtual bool SeleAtomIterator::next()’:
layer3/AtomIterators.cpp:61:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   while ((++a) < I->Table.size()) {
          ~~~~~~^~~~~~~~~~~~~~~~~
layer3/AtomIterators.cpp: In member function ‘virtual bool SeleCoordIterator::next()’:
layer3/AtomIterators.cpp:129:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for (a++; a < I->Table.size(); a++) {
             ~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In function ‘PyObject* ObjectSliceAllStatesAsPyList(ObjectSlice*)’:
layer2/ObjectSlice.cpp:78:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(a = 0; a < I->State.size(); a++) {
              ~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In member function ‘virtual void ObjectSlice::invalidate(cRep_t, cRepInv_t, int)’:
layer2/ObjectSlice.cpp:210:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(a = 0; a < State.size(); a++) {
              ~~^~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In member function ‘virtual void ObjectSlice::update()’:
layer2/ObjectSlice.cpp:633:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(a = 0; a < I->State.size(); a++) {
              ~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In function ‘void ObjectSliceDrag(ObjectSlice*, int, int, float*, float*, float*)’:
layer2/ObjectSlice.cpp:679:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     if(state < I->State.size())
        ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In function ‘int ObjectSliceGetVertex(ObjectSlice*, int, int, float*)’:
layer2/ObjectSlice.cpp:750:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     if(state < I->State.size())
        ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In member function ‘virtual void ObjectSlice::render(RenderInfo*)’:
layer2/ObjectSlice.cpp:925:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
       if(state < I->State.size())
          ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp:967:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
         if(cur_state >= I->State.size())
            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp:981:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     if(state < I->State.size())
        ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp:1226:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     if(cur_state >= I->State.size())
        ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In function ‘ObjectSliceState* ObjectSliceStateGetActive(ObjectSlice*, int)’:
layer2/ObjectSlice.cpp:1244:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     if(state < I->State.size()) {
        ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSlice.cpp: In function ‘ObjectSlice* ObjectSliceFromMap(PyMOLGlobals*, ObjectSlice*, ObjectMap*, int, int)’:
layer2/ObjectSlice.cpp:1285:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   if(I->State.size() <= state) {
      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectSlice.cpp: In function ‘void ObjectSliceRecomputeExtent(ObjectSlice*)’:
layer2/ObjectSlice.cpp:1362:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSliceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(a = 0; a < I->State.size(); a++) {
              ~~^~~~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer3/CifDataValueFormatter.cpp -o build/temp.linux-x86_64-3.6/layer3/CifDataValueFormatter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer3/Editor.cpp -o build/temp.linux-x86_64-3.6/layer3/Editor.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer2/ObjectSlice.cpp: In member function ‘virtual void ObjectSlice::update()’:
layer2/ObjectSlice.cpp:639:11: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 225 [-Wformat-truncation=]
           "ObjectSliceUpdate-Error: map '%s' has been deleted.\n", oss->MapName
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
                 from layer1/Scene.h:23,
                 from layer2/ObjectSlice.cpp:34:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 51 and 306 bytes into a destination of size 255
     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
               ^
layer2/ObjectSlice.cpp:638:9: note: in expansion of macro ‘PRINTFB’
         PRINTFB(I->G, FB_ObjectSlice, FB_Errors)
         ^~~~~~~
layer2/ObjectSlice.cpp:650:13: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 231 [-Wformat-truncation=]
             " ObjectSlice: updating \"%s\".\n", I->Name ENDFB(I->G);
             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
                 from layer1/Scene.h:23,
                 from layer2/ObjectSlice.cpp:34:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 28 and 283 bytes into a destination of size 255
     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
               ^
layer2/ObjectSlice.cpp:649:11: note: in expansion of macro ‘PRINTFB’
           PRINTFB(I->G, FB_ObjectSlice, FB_Blather)
           ^~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer2/ObjectSurface.cpp -o build/temp.linux-x86_64-3.6/layer2/ObjectSurface.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/Editor.cpp: In function ‘pymol::Result<> EditorSelect(PyMOLGlobals*, const char*, const char*, const char*, const char*, int, int, int)’:
layer3/Editor.cpp:776:7: warning: variable ‘result’ set but not used [-Wunused-but-set-variable]
   int result = false;
       ^~~~~~
layer3/Editor.cpp: In function ‘int EditorLogState(PyMOLGlobals*, int)’:
layer3/Editor.cpp:585:23: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1015 [-Wformat-overflow=]
       sprintf(buffer, "cmd.edit(%s,%s,%s,%s,pkresi=%d,pkbond=%d)",
                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
               buf1, buf2, buf3, buf4, pkresi ? 1 : 0, pkbond ? 1 : 0);
               ~~~~     
layer3/Editor.cpp:585:23: note: directive argument in the range [0, 1]
layer3/Editor.cpp:585:23: note: directive argument in the range [0, 1]
layer3/Editor.cpp:585:14: note: ‘sprintf’ output between 32 and 4124 bytes into a destination of size 1024
       sprintf(buffer, "cmd.edit(%s,%s,%s,%s,pkresi=%d,pkbond=%d)",
       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
               buf1, buf2, buf3, buf4, pkresi ? 1 : 0, pkbond ? 1 : 0);
               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp: In function ‘void EditorDefineExtraPks(PyMOLGlobals*)’:
layer3/Editor.cpp:335:21: warning: ‘%s’ directive writing up to 255 bytes into a region of size 249 [-Wformat-overflow=]
     sprintf(buffer, "(byres %s)", name);
                     ^~~~~~~~~~~~  ~~~~
layer3/Editor.cpp:335:12: note: ‘sprintf’ output between 9 and 264 bytes into a destination of size 256
     sprintf(buffer, "(byres %s)", name);
     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp:337:21: warning: ‘%s’ directive writing up to 255 bytes into a region of size 247 [-Wformat-overflow=]
     sprintf(buffer, "(bychain %s)", name);
                     ^~~~~~~~~~~~~~  ~~~~
layer3/Editor.cpp:337:12: note: ‘sprintf’ output between 11 and 266 bytes into a destination of size 256
     sprintf(buffer, "(bychain %s)", name);
     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Editor.cpp:339:21: warning: ‘%s’ directive writing up to 255 bytes into a region of size 246 [-Wformat-overflow=]
     sprintf(buffer, "(byobject %s)", name);
                     ^~~~~~~~~~~~~~~  ~~~~
layer3/Editor.cpp:339:12: note: ‘sprintf’ output between 12 and 267 bytes into a destination of size 256
     sprintf(buffer, "(byobject %s)", name);
     ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer2/ObjectSurface.cpp: In function ‘PyObject* ObjectSurfaceAllStatesAsPyList(ObjectSurface*)’:
layer2/ObjectSurface.cpp:83:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(int a = 0; a < I->State.size(); a++) {
                  ~~^~~~~~~~~~~~~~~~~
layer2/ObjectSurface.cpp: In function ‘void ObjectSurfaceDump(ObjectSurface*, const char*, int, int)’:
layer2/ObjectSurface.cpp:236:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     if(state < I->State.size()) {
        ~~~~~~^~~~~~~~~~~~~~~~~
layer2/ObjectSurface.cpp: In member function ‘virtual void ObjectSurface::invalidate(cRep_t, cRepInv_t, int)’:
layer2/ObjectSurface.cpp:281:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(int a = 0; a < I->State.size(); a++) {
                    ~~^~~~~~~~~~~~~~~~~
layer2/ObjectSurface.cpp: In function ‘int ObjectSurfaceInvalidateMapName(ObjectSurface*, const char*, const char*)’:
layer2/ObjectSurface.cpp:311:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(int a = 0; a < I->State.size(); a++) {
                  ~~^~~~~~~~~~~~~~~~~
layer2/ObjectSurface.cpp: In function ‘ObjectSurface* ObjectSurfaceFromBox(PyMOLGlobals*, ObjectSurface*, ObjectMap*, int, int, float*, float*, float, cIsosurfaceMode, float, pymol::vla<float>&&, cIsosurfaceSide, int)’:
layer2/ObjectSurface.cpp:1029:22: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   if(I->State.size() <= state) {
      ~~~~~~~~~~~~~~~~^~~~~~~~
layer2/ObjectSurface.cpp: In function ‘int ObjectSurfaceSetLevel(ObjectSurface*, float, int, int)’:
layer2/ObjectSurface.cpp:1125:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectSurfaceState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(int a = 0; a < I->State.size(); a++) {
                    ~~^~~~~~~~~~~~~~~~~
layer3/Editor.cpp: In function ‘void EditorPrepareDrag(PyMOLGlobals*, pymol::CObject*, int, int, int, int)’:
layer3/Editor.cpp:1933:9: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=]
         " Editor: grabbing (%s).", name ENDFB(G);
         ^~~~~~~~~~~~~~~~~~~~~~~~~  ~~~~
In file included from layer1/Ortho.h:32,
                 from layer1/ButMode.h:20,
                 from layer3/Editor.cpp:28:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 22 and 277 bytes into a destination of size 255
     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
               ^
layer3/Editor.cpp:1932:7: note: in expansion of macro ‘PRINTFB’
       PRINTFB(G, FB_Editor, FB_Blather)
       ^~~~~~~
layer2/ObjectSurface.cpp: In function ‘void ObjectSurfaceDump(ObjectSurface*, const char*, int, int)’:
layer2/ObjectSurface.cpp:268:9: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
         " ObjectSurfaceDump: %s written to %s\n", I->Name, fname ENDFB(I->G);
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
                 from layer1/Scene.h:23,
                 from layer2/ObjectSurface.cpp:35:
layer0/Feedback.h:274:15: note: ‘snprintf’ output 34 or more bytes (assuming 289) into a destination of size 255
     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
               ^
layer2/ObjectSurface.cpp:267:7: note: in expansion of macro ‘PRINTFB’
       PRINTFB(I->G, FB_ObjectSurface, FB_Actions)
       ^~~~~~~
layer2/ObjectSurface.cpp: In member function ‘virtual void ObjectSurface::update()’:
layer2/ObjectSurface.cpp:493:15: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
               " ObjectSurface: updating \"%s\".\n", I->Name ENDFB(I->G);
               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
                 from layer1/Scene.h:23,
                 from layer2/ObjectSurface.cpp:35:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 30 and 285 bytes into a destination of size 255
     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
               ^
layer2/ObjectSurface.cpp:492:13: note: in expansion of macro ‘PRINTFB’
             PRINTFB(I->G, FB_ObjectSurface, FB_Details)
             ^~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer3/Executive.cpp -o build/temp.linux-x86_64-3.6/layer3/Executive.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer3/MoleculeExporter.cpp -o build/temp.linux-x86_64-3.6/layer3/MoleculeExporter.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveIsosurfaceEtc(PyMOLGlobals*, const char*, const char*, float, const char*, float, int, float, int, int, int, int)’:
layer3/Executive.cpp:986:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
         if(map_state >= mapObj->State.size())
            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveIsomeshEtc(PyMOLGlobals*, const char*, const char*, float, const char*, float, int, float, int, int, int, float)’:
layer3/Executive.cpp:1132:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
         if(map_state >= mapObj->State.size())
            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveVolume(PyMOLGlobals*, const char*, const char*, float, const char*, float, int, float, int, int)’:
layer3/Executive.cpp:1305:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
         if(map_state >= mapObj->State.size())
            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/cassert:44,
                 from /usr/include/glm/detail/func_exponential.inl:8,
                 from /usr/include/glm/detail/func_exponential.hpp:103,
                 from /usr/include/glm/detail/func_geometric.inl:4,
                 from /usr/include/glm/detail/func_geometric.hpp:113,
                 from /usr/include/glm/geometric.hpp:6,
                 from /usr/include/glm/detail/func_matrix.inl:4,
                 from /usr/include/glm/detail/func_matrix.hpp:149,
                 from /usr/include/glm/detail/type_mat2x2.inl:4,
                 from /usr/include/glm/detail/type_mat2x2.hpp:182,
                 from /usr/include/glm/mat2x2.hpp:6,
                 from /usr/include/glm/glm.hpp:71,
                 from layer3/Executive.cpp:114:
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveSmooth(PyMOLGlobals*, const char*, int, int, int, int, int, int, float, bool)’:
layer3/Executive.cpp:6095:17: warning: comparison of integer expressions of different signedness: ‘const long unsigned int’ and ‘int’ [-Wsign-compare]
   assert(n_atom == SelectorCountAtoms(G, sele, cStateAll));
          ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:6155:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const long unsigned int’ [-Wsign-compare]
       for (int c = 0; c < n_atom; ++c) {
                       ~~^~~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveMapSet(PyMOLGlobals*, const char*, int, const char*, int, int, int, int)’:
layer3/Executive.cpp:6325:34: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
             if(obj->State.size() > max_n_state)
                ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~
layer3/Executive.cpp:6436:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
                     if(src_state < obj->State.size()) {
                        ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘float ExecutiveRMSPairs(PyMOLGlobals*, const std::vector<SelectorTmp>&, int, bool)’:
layer3/Executive.cpp:11035:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
   for(a = 0; a < pairs; a++) {
              ~~^~~~~~~
layer3/Executive.cpp:11040:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
     if(a < (pairs - 1))
        ~~^~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveColor(PyMOLGlobals*, const char*, const char*, int, int)’:
layer3/Executive.cpp:12401:7: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable]
   int ok = false;
       ^~
layer3/Executive.cpp: In function ‘void ExecutiveSymExp(PyMOLGlobals*, const char*, const char*, const char*, float, int, int)’:
layer3/Executive.cpp:14066:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
             for (unsigned idx = 0; idx < cs->NIndex; ++idx) {
                                    ~~~~^~~~~~~~~~~~
layer3/Executive.cpp:14093:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
             for (unsigned atm = 0; atm < new_obj->NAtom; ++atm) {
                                    ~~~~^~~~~~~~~~~~~~~~
layer3/Executive.cpp: In member function ‘virtual int CExecutive::click(int, int, int, int)’:
layer3/Executive.cpp:14873:68: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
               if(((panel->is_group) && (((xx) - 1) / DIP2PIXEL(8)) > (panel->nest_level + 1)) ||
                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:14874:69: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
                  ((!panel->is_group) && (((xx) - 1) / DIP2PIXEL(8)) > panel->nest_level)) {
                                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In member function ‘virtual int CExecutive::release(int, int, int, int)’:
layer3/Executive.cpp:15162:65: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
                (((panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > (panel->nest_level + 1)) ||
                                       ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:15163:66: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
                 ((!panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > panel->nest_level))) {
                                        ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In member function ‘virtual int CExecutive::drag(int, int, int)’:
layer3/Executive.cpp:15304:70: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
                   if(((panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > (panel->nest_level + 1)) ||
                                            ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:15305:71: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
                      ((!panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > panel->nest_level)) {
                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:15340:71: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
                   if(!((panel->is_group) && ((xx - 1) / DIP2PIXEL(8)) > (panel->nest_level + 1))) {
                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer0/OOMac.h:22,
                 from layer3/Executive.cpp:37:
layer3/Executive.cpp: In function ‘void ExecutiveFree(PyMOLGlobals*)’:
layer3/Executive.cpp:16294:14: warning: deleting object of polymorphic class type ‘CExecutive’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   DeleteP(G->Executive);
              ^~~~~~~~~
layer0/MemoryDebug.h:86:39: note: in definition of macro ‘DeleteP’
 #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
                                       ^~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveSliceNew(PyMOLGlobals*, const char*, const char*, int, int)’:
layer3/Executive.cpp:16607:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
         if(map_state >= mapObj->State.size())
            ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from layer3/Executive.h:38,
                 from layer3/Executive.cpp:38:
layer0/TrackerList.h: In instantiation of ‘pymol::TrackerAdapter<T>::TrackerAdapterIterator<IsConst>::TrackerAdapterIterator(CTracker*, int) [with bool IsConst = false; T = SpecRec]’:
layer0/TrackerList.h:99:29:   required from ‘pymol::TrackerAdapter<T>::iterator pymol::TrackerAdapter<T>::begin() [with T = SpecRec; pymol::TrackerAdapter<T>::iterator = pymol::TrackerAdapter<SpecRec>::TrackerAdapterIterator<false>]’
layer3/Executive.cpp:202:62:   required from here
layer0/TrackerList.h:80:15: warning: ‘pymol::TrackerAdapter<SpecRec>::TrackerAdapterIterator<false>::m_tracker’ will be initialized after [-Wreorder]
     CTracker* m_tracker;
               ^~~~~~~~~
layer0/TrackerList.h:79:22: warning:   ‘int pymol::TrackerAdapter<SpecRec>::TrackerAdapterIterator<false>::m_iter_id’ [-Wreorder]
     int m_iter_id = -1;
                      ^
layer0/TrackerList.h:35:14: warning:   when initialized here [-Wreorder]
     explicit TrackerAdapterIterator(CTracker* tracker, int list_id)
              ^~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveSetBondSettingFromString(PyMOLGlobals*, int, const char*, const char*, const char*, int, int, int)’:
layer3/Executive.cpp:11424:17: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
                 " Setting: %s set for %d bonds in object \"%s\".\n",
                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                 name, nSet, obj->Name ENDF(G);
                 ~~~~
layer3/Executive.cpp:11424:17: note: directive argument in the range [1, 2147483647]
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 42 and 560 bytes into a destination of size 255
 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
                                                     ^
layer3/Executive.cpp:11423:15: note: in expansion of macro ‘PRINTF’
               PRINTF
               ^~~~~~
layer3/Executive.cpp: In function ‘PyObject* ExecutiveGetBondSetting(PyMOLGlobals*, int, char*, const char*, int, int, int)’:
layer3/Executive.cpp:11505:8: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
        " Getting: %s for %d bonds in object \"%s\".\n",
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        name, nSet, obj->Name ENDF(G);
        ~~~~
layer3/Executive.cpp:11505:8: note: directive argument in the range [1, 2147483647]
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 38 and 556 bytes into a destination of size 255
 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
                                                     ^
layer3/Executive.cpp:11504:6: note: in expansion of macro ‘PRINTF’
      PRINTF
      ^~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveSetBondSetting(PyMOLGlobals*, int, PyObject*, const char*, const char*, int, int, int)’:
layer3/Executive.cpp:11605:19: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
                   " Setting: %s set for %d bonds in object \"%s\".\n",
                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                   name, nSet, obj->Name ENDF(G);
                   ~~~~
layer3/Executive.cpp:11605:19: note: directive argument in the range [1, 2147483647]
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 42 and 560 bytes into a destination of size 255
 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
                                                     ^
layer3/Executive.cpp:11604:17: note: in expansion of macro ‘PRINTF’
                 PRINTF
                 ^~~~~~
layer3/Executive.cpp:11624:7: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 236 [-Wformat-truncation=]
       " Setting-Warning: '%s' is not a bond-level setting\n", name
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  ~~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 50 and 304 bytes into a destination of size 255
     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
               ^
layer3/Executive.cpp:11623:5: note: in expansion of macro ‘PRINTFB’
     PRINTFB(G, FB_Setting, FB_Warnings)
     ^~~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveUnsetBondSetting(PyMOLGlobals*, int, const char*, const char*, int, int, int)’:
layer3/Executive.cpp:11684:15: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
               " Setting: %s unset for %d bonds in object \"%s\".\n",
               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
               name, nSet, rec->obj->Name ENDF(G);
               ~~~~
layer3/Executive.cpp:11684:15: note: directive argument in the range [1, 2147483647]
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 44 and 562 bytes into a destination of size 255
 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
                                                     ^
layer3/Executive.cpp:11683:13: note: in expansion of macro ‘PRINTF’
             PRINTF
             ^~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveSetObjSettingFromString(PyMOLGlobals*, int, const char*, pymol::CObject*, int, int, int)’:
layer3/Executive.cpp:12226:19: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
                   " Setting: %s set to %s in object \"%s\", state %d.\n",
                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                   name, value2, obj->Name, state + 1 ENDF(G);
                   ~~~~
layer3/Executive.cpp:12226:19: note: directive argument in the range [1, 2147483647]
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1584 bytes into a destination of size 255
 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
                                                     ^
layer3/Executive.cpp:12225:17: note: in expansion of macro ‘PRINTF’
                 PRINTF
                 ^~~~~~
layer3/Executive.cpp:12218:19: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
                   " Setting: %s set to %s in object \"%s\".\n",
                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                   name, value2, obj->Name ENDF(G);
                   ~~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1566 bytes into a destination of size 255
 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
                                                     ^
layer3/Executive.cpp:12217:17: note: in expansion of macro ‘PRINTF’
                 PRINTF
                 ^~~~~~
layer3/Executive.cpp:12197:18: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
           PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~  ~~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 21 and 1298 bytes into a destination of size 255
 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
                                                     ^
layer3/Executive.cpp:12197:11: note: in expansion of macro ‘PRINTF’
           PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
           ^~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveSetSettingFromString(PyMOLGlobals*, int, const char*, const char*, int, int, int)’:
layer3/Executive.cpp:12097:21: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
                     " Setting: %s set to %s in %d objects, state %d.\n",
                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                     name, value2, nObj, state + 1 ENDF(G);
                     ~~~~
layer3/Executive.cpp:12097:21: note: directive argument in the range [1, 2147483647]
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1339 bytes into a destination of size 255
 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
                                                     ^
layer3/Executive.cpp:12096:19: note: in expansion of macro ‘PRINTF’
                   PRINTF
                   ^~~~~~
layer3/Executive.cpp:12094:21: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
                     " Setting: %s set to %s in %d objects.\n", name, value2, nObj ENDF(G);
                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  ~~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1321 bytes into a destination of size 255
 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
                                                     ^
layer3/Executive.cpp:12093:19: note: in expansion of macro ‘PRINTF’
                   PRINTF
                   ^~~~~~
layer3/Executive.cpp:12129:25: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
                         " Setting: %s set for %d atoms in object \"%s\".\n",
                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                         name, op.i4, rec->obj->Name ENDF(G);
                         ~~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 42 and 561 bytes into a destination of size 255
 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
                                                     ^
layer3/Executive.cpp:12128:23: note: in expansion of macro ‘PRINTF’
                       PRINTF
                       ^~~~~~
layer3/Executive.cpp:12161:25: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
                         " Setting: %s set to %s in object \"%s\", state %d.\n",
                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                         name, value2, rec->obj->Name, state + 1 ENDF(G);
                         ~~~~
layer3/Executive.cpp:12161:25: note: directive argument in the range [1, 2147483647]
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1584 bytes into a destination of size 255
 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
                                                     ^
layer3/Executive.cpp:12160:23: note: in expansion of macro ‘PRINTF’
                       PRINTF
                       ^~~~~~
layer3/Executive.cpp:12153:25: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
                         " Setting: %s set to %s in object \"%s\".\n",
                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                         name, value2, rec->obj->Name ENDF(G);
                         ~~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1566 bytes into a destination of size 255
 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
                                                     ^
layer3/Executive.cpp:12152:23: note: in expansion of macro ‘PRINTF’
                       PRINTF
                       ^~~~~~
layer3/Executive.cpp:12057:18: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
           PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~  ~~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 21 and 1298 bytes into a destination of size 255
 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
                                                     ^
layer3/Executive.cpp:12057:11: note: in expansion of macro ‘PRINTF’
           PRINTF " Setting: %s set to %s.\n", name, value2 ENDF(G);
           ^~~~~~
layer3/Executive.cpp: In function ‘bool ExecutiveSetSymmetry(PyMOLGlobals*, pymol::zstring_view, int, const CSymmetry&, bool)’:
layer3/Executive.cpp:5951:7: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 202 [-Wformat-truncation=]
       " %s-Details: Updated symmetry for '%s'\n", __func__, obj->Name ENDFB(G);
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 56 and 311 bytes into a destination of size 255
     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
               ^
layer3/Executive.cpp:5950:7: note: in expansion of macro ‘PRINTFB’
       PRINTFB(G, FB_Executive, FB_Details)
       ^~~~~~~
layer3/Executive.cpp:5942:7: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 199 [-Wformat-truncation=]
       " %s-Warning: Cannot set symmetry for '%s' (type %s)\n", __func__,
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 84 and 339 bytes into a destination of size 255
     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
               ^
layer3/Executive.cpp:5941:7: note: in expansion of macro ‘PRINTFB’
       PRINTFB(G, FB_Executive, FB_Warnings)
       ^~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveSetSetting(PyMOLGlobals*, int, PyObject*, pymol::zstring_view, int, int, int)’:
layer3/Executive.cpp:11932:9: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 236 [-Wformat-truncation=]
         " Setting-Warning: '%s' is a %s-level setting\n", name, SettingLevelGetName(index)
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  ~~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: ‘snprintf’ output 42 or more bytes (assuming 296) into a destination of size 255
     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
               ^
layer3/Executive.cpp:11931:7: note: in expansion of macro ‘PRINTFB’
       PRINTFB(G, FB_Setting, FB_Warnings)
       ^~~~~~~
layer3/Executive.cpp:11788:21: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
                     " Setting: %s set to %s in %d objects, state %d.\n",
                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                     name, value, nObj, state + 1 ENDF(G);
                     ~~~~
layer3/Executive.cpp:11788:21: note: directive argument in the range [1, 2147483647]
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1339 bytes into a destination of size 255
 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
                                                     ^
layer3/Executive.cpp:11787:19: note: in expansion of macro ‘PRINTF’
                   PRINTF
                   ^~~~~~
layer3/Executive.cpp:11785:21: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
                     " Setting: %s set to %s in %d objects.\n", name, value, nObj ENDF(G);
                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  ~~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1321 bytes into a destination of size 255
 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
                                                     ^
layer3/Executive.cpp:11784:19: note: in expansion of macro ‘PRINTF’
                   PRINTF
                   ^~~~~~
layer3/Executive.cpp:11877:27: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
                           " Setting: %s set for %d atoms in object \"%s\".\n",
                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                           name, op.i4, rec->obj->Name ENDF(G);
                           ~~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 42 and 561 bytes into a destination of size 255
 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
                                                     ^
layer3/Executive.cpp:11876:25: note: in expansion of macro ‘PRINTF’
                         PRINTF
                         ^~~~~~
layer3/Executive.cpp:11909:25: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
                         " Setting: %s set to %s in object \"%s\", state %d.\n",
                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                         name, value, rec->obj->Name, state + 1 ENDF(G);
                         ~~~~
layer3/Executive.cpp:11909:25: note: directive argument in the range [1, 2147483647]
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 43 and 1584 bytes into a destination of size 255
 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
                                                     ^
layer3/Executive.cpp:11908:23: note: in expansion of macro ‘PRINTF’
                       PRINTF
                       ^~~~~~
layer3/Executive.cpp:11902:25: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
                         " Setting: %s set to %s in object \"%s\".\n",
                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                         name, value, rec->obj->Name ENDF(G);
                         ~~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 34 and 1566 bytes into a destination of size 255
 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
                                                     ^
layer3/Executive.cpp:11901:23: note: in expansion of macro ‘PRINTF’
                       PRINTF
                       ^~~~~~
layer3/Executive.cpp:11744:18: warning: ‘%s’ directive output may be truncated writing up to 254 bytes into a region of size 245 [-Wformat-truncation=]
           PRINTF " Setting: %s set to %s.\n", name, value ENDF(G);
                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~  ~~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: ‘snprintf’ output between 21 and 1298 bytes into a destination of size 255
 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
                                                     ^
layer3/Executive.cpp:11744:11: note: in expansion of macro ‘PRINTF’
           PRINTF " Setting: %s set to %s.\n", name, value ENDF(G);
           ^~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveUnsetSetting(PyMOLGlobals*, int, pymol::zstring_view, int, int, int)’:
layer3/Executive.cpp:12338:23: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 215 [-Wformat-truncation=]
                       " Setting: %s unset for %d atoms in object \"%s\".\n",
                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: ‘snprintf’ output 44 or more bytes (assuming 299) into a destination of size 255
 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
                                                     ^
layer3/Executive.cpp:12337:21: note: in expansion of macro ‘PRINTF’
                     PRINTF
                     ^~~~~~
layer3/Executive.cpp:12360:25: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
                         " Setting: %s unset in object \"%s\", state %d.\n",
                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:12360:25: note: directive argument in the range [1, 2147483647]
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: ‘snprintf’ output 41 or more bytes (assuming 305) into a destination of size 255
 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
                                                     ^
layer3/Executive.cpp:12359:23: note: in expansion of macro ‘PRINTF’
                       PRINTF
                       ^~~~~~
layer3/Executive.cpp:12354:25: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 227 [-Wformat-truncation=]
                         " Setting: %s unset in object \"%s\".\n",
                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: ‘snprintf’ output 32 or more bytes (assuming 287) into a destination of size 255
 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
                                                     ^
layer3/Executive.cpp:12353:23: note: in expansion of macro ‘PRINTF’
                       PRINTF
                       ^~~~~~
layer3/Executive.cpp:12276:14: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 223 [-Wformat-truncation=]
       PRINTF " Setting: %s restored to default (%s)\n", name, value ENDF(G);
              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~        ~~~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:282:53: note: ‘snprintf’ output 35 or more bytes (assuming 1058) into a destination of size 255
 #define PRINTF { FeedbackLineType _FBstr; (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
                                                     ^
layer3/Executive.cpp:12276:7: note: in expansion of macro ‘PRINTF’
       PRINTF " Setting: %s restored to default (%s)\n", name, value ENDF(G);
       ^~~~~~
layer3/Executive.cpp: In function ‘void ExecutiveManageObject(PyMOLGlobals*, pymol::CObject*, int, int)’:
layer3/Executive.cpp:14447:9: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 229 [-Wformat-truncation=]
         " Executive-Warning: name \"%s\" collides with a selection language keyword.\n",
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 73 and 328 bytes into a destination of size 255
     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
               ^
layer3/Executive.cpp:14446:7: note: in expansion of macro ‘PRINTFB’
       PRINTFB(G, FB_Executive, FB_Warnings)
       ^~~~~~~
layer3/Executive.cpp:14442:9: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 230 [-Wformat-truncation=]
         " Executive: object name \"%s\" is illegal -- renamed to 'all_'.\n", obj->Name
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 61 and 316 bytes into a destination of size 255
     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
               ^
layer3/Executive.cpp:14441:7: note: in expansion of macro ‘PRINTFB’
       PRINTFB(G, FB_Executive, FB_Warnings)
       ^~~~~~~
layer3/Executive.cpp:14467:13: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
             " Executive: object \"%s\" created.\n", obj->Name ENDFB(G);
             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 32 and 287 bytes into a destination of size 255
     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
               ^
layer3/Executive.cpp:14466:11: note: in expansion of macro ‘PRINTFB’
           PRINTFB(G, FB_Executive, FB_Actions)
           ^~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveCopy(PyMOLGlobals*, const char*, const char*, int)’:
layer3/Executive.cpp:9665:5: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 236 [-Wformat-truncation=]
     " Executive: object %s created.\n", oDst->Name ENDFB(G);
     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 30 and 285 bytes into a destination of size 255
     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
               ^
layer3/Executive.cpp:9664:3: note: in expansion of macro ‘PRINTFB’
   PRINTFB(G, FB_Executive, FB_Actions)
   ^~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer3/MovieScene.cpp -o build/temp.linux-x86_64-3.6/layer3/MovieScene.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/Executive.cpp: In function ‘int ExecutiveGroup(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, int, int)’:
layer3/Executive.cpp:2259:19: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 235 [-Wformat-truncation=]
                   " Executive: adding '%s' to group '%s'.\n", rec.name, rec.group_name
                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 36 and 546 bytes into a destination of size 255
     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
               ^
layer3/Executive.cpp:2258:17: note: in expansion of macro ‘PRINTFB’
                 PRINTFB(G, FB_Executive, FB_Actions)
                 ^~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<std::vector<DiscardedRec> > ExecutiveSetName(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, bool)’:
layer3/Executive.cpp:3523:7: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 222 [-Wformat-truncation=]
       " Warning: Invalid characters in '%s' have been replaced or stripped\n",
       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
       name ENDFB(G);
       ~~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 67 and 322 bytes into a destination of size 255
     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
               ^
layer3/Executive.cpp:3522:5: note: in expansion of macro ‘PRINTFB’
     PRINTFB(G, FB_Executive, FB_Warnings)
     ^~~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveProcessPDBFile(PyMOLGlobals*, pymol::CObject*, const char*, const char*, const char*, int, int, int, char*, int, int, int, int)’:
layer3/Executive.cpp:4259:35: warning: ‘%04d’ directive writing between 4 and 11 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
                 sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1);
                                   ^~~~~~~~~
layer3/Executive.cpp:4259:35: note: using the range [-2147483648, 2147483647] for directive argument
layer3/Executive.cpp:4259:24: note: ‘sprintf’ output between 6 and 268 bytes into a destination of size 256
                 sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1);
                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:4257:35: warning: ‘%04d’ directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
                 sprintf(pdb_name, "%s_%04d", cur_name, model_number);
                                   ^~~~~~~~~
layer3/Executive.cpp:4257:35: note: directive argument in the range [1, 2147483647]
layer3/Executive.cpp:4257:24: note: ‘sprintf’ output between 6 and 267 bytes into a destination of size 256
                 sprintf(pdb_name, "%s_%04d", cur_name, model_number);
                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:4246:35: warning: ‘%04d’ directive writing between 4 and 11 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
                 sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1);
                                   ^~~~~~~~~
layer3/Executive.cpp:4246:35: note: using the range [-2147483648, 2147483647] for directive argument
layer3/Executive.cpp:4246:24: note: ‘sprintf’ output between 6 and 268 bytes into a destination of size 256
                 sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1);
                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:4237:33: warning: ‘%04d’ directive writing between 4 and 11 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
               sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1);
                                 ^~~~~~~~~
layer3/Executive.cpp:4237:33: note: using the range [-2147483648, 2147483647] for directive argument
layer3/Executive.cpp:4237:22: note: ‘sprintf’ output between 6 and 268 bytes into a destination of size 256
               sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1);
               ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:4235:33: warning: ‘%04d’ directive writing between 4 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
               sprintf(pdb_name, "%s_%04d", cur_name, model_number);
                                 ^~~~~~~~~
layer3/Executive.cpp:4235:33: note: directive argument in the range [1, 2147483647]
layer3/Executive.cpp:4235:22: note: ‘sprintf’ output between 6 and 267 bytes into a destination of size 256
               sprintf(pdb_name, "%s_%04d", cur_name, model_number);
               ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp:4224:33: warning: ‘%04d’ directive writing between 4 and 11 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
               sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1);
                                 ^~~~~~~~~
layer3/Executive.cpp:4224:33: note: using the range [-2147483648, 2147483647] for directive argument
layer3/Executive.cpp:4224:22: note: ‘sprintf’ output between 6 and 268 bytes into a destination of size 256
               sprintf(pdb_name, "%s_%04d", cur_name, n_processed + 1);
               ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Executive.cpp: In function ‘int ExecutiveSetSession(PyMOLGlobals*, PyObject*, int, int)’:
layer3/Executive.cpp:5070:13: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 213 [-Wformat-truncation=]
             " Executive: skipping unrecognized object \"%s\" of type %d.\n",
             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 56 and 321 bytes into a destination of size 255
     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
               ^
layer3/Executive.cpp:5069:11: note: in expansion of macro ‘PRINTFB’
           PRINTFB(G, FB_Executive, FB_Errors)
           ^~~~~~~
layer3/Executive.cpp:5095:11: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 210 [-Wformat-truncation=]
           "ExectiveSetNamedEntries-Error: after object \"%s\".\n", rec->name ENDFB(G);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 49 and 304 bytes into a destination of size 255
     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
               ^
layer3/Executive.cpp:5094:9: note: in expansion of macro ‘PRINTFB’
         PRINTFB(G, FB_Executive, FB_Errors)
         ^~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveRemoveAtoms(PyMOLGlobals*, const char*, int)’:
layer3/Executive.cpp:9007:17: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 207 and 217 [-Wformat-truncation=]
                 " Remove: eliminated %d atoms in model \"%s\".\n",
                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 42 and 307 bytes into a destination of size 255
     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
               ^
layer3/Executive.cpp:9006:15: note: in expansion of macro ‘PRINTFB’
               PRINTFB(G, FB_Editor, FB_Actions)
               ^~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveBond(PyMOLGlobals*, const char*, const char*, int, int, int, pymol::zstring_view)’:
layer3/Executive.cpp:9371:19: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 200 and 210 [-Wformat-truncation=]
                   " Valence: %d bond valences adjusted in model \"%s\".\n", cnt,
                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 49 and 314 bytes into a destination of size 255
     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
               ^
layer3/Executive.cpp:9370:17: note: in expansion of macro ‘PRINTFB’
                 PRINTFB(G, FB_Editor, FB_Actions)
                 ^~~~~~~
layer3/Executive.cpp:9358:19: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 214 and 224 [-Wformat-truncation=]
                   " Bond: %d bonds added to model \"%s\".\n", cnt, rec->obj->Name
                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 35 and 300 bytes into a destination of size 255
     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
               ^
layer3/Executive.cpp:9357:17: note: in expansion of macro ‘PRINTFB’
                 PRINTFB(G, FB_Editor, FB_Actions)
                 ^~~~~~~
layer3/Executive.cpp:9383:19: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size between 208 and 218 [-Wformat-truncation=]
                   " Unbond: %d bonds removed from model \"%s\".\n",
                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 41 and 306 bytes into a destination of size 255
     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
               ^
layer3/Executive.cpp:9382:17: note: in expansion of macro ‘PRINTFB’
                 PRINTFB(G, FB_Editor, FB_Actions)
                 ^~~~~~~
layer3/Executive.cpp: In function ‘pymol::Result<> ExecutiveLoad(PyMOLGlobals*, const ExecutiveLoadArgs&)’:
layer3/Executive.cpp:4047:7: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=]
       "%s", buf ENDFB(G);
       ^~~~  ~~~
In file included from layer1/Ortho.h:32,
                 from layer3/ExecutiveDef.h:3,
                 from layer3/Executive.h:29,
                 from layer3/Executive.cpp:38:
layer0/Feedback.h:274:15: note: ‘snprintf’ output between 1 and 1024 bytes into a destination of size 255
     (snprintf)( _FBstr, FEEDBACK_MAX_OUTPUT,
               ^
layer3/Executive.cpp:4046:5: note: in expansion of macro ‘PRINTFB’
     PRINTFB(G, FB_Executive, FB_Actions)
     ^~~~~~~
layer3/Executive.cpp: In member function ‘virtual int CExecutive::drag(int, int, int)’:
layer3/Executive.cpp:15471:42: warning: ‘%s’ directive writing up to 1023 bytes into a region of size 1013 [-Wformat-overflow=]
                   sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n",
                                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                           order_input, (location == -2) ? "upper" : "current");
                           ~~~~~~~~~~~     
layer3/Executive.cpp:15471:26: note: ‘sprintf’ output between 32 and 1057 bytes into a destination of size 1024
                   sprintf(I->ReorderLog, "cmd.order(\"%s\",location=\"%s\")\n",
                   ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
                           order_input, (location == -2) ? "upper" : "current");
                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer3/PlugIOManager.cpp -o build/temp.linux-x86_64-3.6/layer3/PlugIOManager.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/Executive.cpp: In function ‘pymol::Result<std::pair<float, float> > ExecutiveSpectrum(PyMOLGlobals*, pymol::zstring_view, pymol::zstring_view, float, float, int, int, pymol::zstring_view, int, int, int)’:
layer3/Executive.cpp:4764:24: warning: ‘char* strncpy(char*, const char*, size_t)’ specified bound 8 equals destination size [-Wstringop-truncation]
                 strncpy(value_s, raw_ptr, sizeof(value_e));
                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/PlugIOManager.cpp: In function ‘ObjectMap* PlugIOManagerLoadVol(PyMOLGlobals*, ObjectMap*, const char*, int, int, const char*)’:
layer3/PlugIOManager.cpp:416:34: warning: comparison of integer expressions of different signedness: ‘std::vector<ObjectMapState>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
             if(obj->State.size() <= state) {
                ~~~~~~~~~~~~~~~~~~^~~~~~~~
In file included from /usr/include/c++/8/cassert:44,
                 from layer0/Field.h:24,
                 from layer0/Isosurf.h:24,
                 from layer2/ObjectMap.h:25,
                 from layer3/PlugIOManager.h:23,
                 from layer3/PlugIOManager.cpp:24:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer0/Field.h:114:12:   required from ‘T& CField::get(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’
layer3/PlugIOManager.cpp:541:21:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
     assert(sizeof...(pos) <= n_dim());
            ~~~~~~~~~~~~~~~^~~~~~~~~~
layer3/PlugIOManager.cpp: In function ‘pymol::CObject* PlugIOManagerLoad(PyMOLGlobals*, pymol::CObject**, const char*, int, int, const char*, int)’:
layer3/PlugIOManager.cpp:946:9: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 200 [-Wformat-truncation=]
         " PlugIOManagerLoad: can't load trajectory into object '%s'\n", obj->Name ENDFB(G);
         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
                 from /usr/include/c++/8/cstdio:42,
                 from /usr/include/c++/8/ext/string_conversions.h:43,
                 from /usr/include/c++/8/bits/basic_string.h:6404,
                 from /usr/include/c++/8/string:52,
                 from /usr/include/c++/8/stdexcept:39,
                 from /usr/include/c++/8/array:39,
                 from /usr/include/c++/8/tuple:39,
                 from /usr/include/c++/8/bits/unique_ptr.h:37,
                 from /usr/include/c++/8/memory:80,
                 from layer0/os_python.h:23,
                 from layer3/PlugIOManager.cpp:20:
/usr/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output between 58 and 313 bytes into a destination of size 255
   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        __glibc_objsize (__s), __fmt,
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        __va_arg_pack ());
        ~~~~~~~~~~~~~~~~~           
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer3/RingFinder.cpp -o build/temp.linux-x86_64-3.6/layer3/RingFinder.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/RingFinder.cpp: In member function ‘void AbstractRingFinder::recursion(int, int)’:
layer3/RingFinder.cpp:23:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     } else if (depth < m_indices.size() - 1) {
                ~~~~~~^~~~~~~~~~~~~~~~~~~~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer3/Seeker.cpp -o build/temp.linux-x86_64-3.6/layer3/Seeker.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer3/ExecutivePython.cpp -o build/temp.linux-x86_64-3.6/layer3/ExecutivePython.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer3/Seeker.cpp: In function ‘void SeekerRefresh(PyMOLGlobals*, std::vector<CSeqRow>&)’:
layer3/Seeker.cpp:485:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
   for(int b = 0; b < nRow; b++) {
                  ~~^~~~~~
layer3/Seeker.cpp: In function ‘void SeekerUpdate(PyMOLGlobals*)’:
layer3/Seeker.cpp:1150:23: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
           if(row->len < min_pad) {
              ~~~~~~~~~^~~~~~~~~
layer3/Seeker.cpp:1186:23: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
           if(row->len < min_pad) {
              ~~~~~~~~~^~~~~~~~~
layer3/Seeker.cpp: In lambda function:
layer3/Seeker.cpp:1248:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
             for(int i = 0; i < str_size; i++){
                            ~~^~~~~~~~~~
layer3/Seeker.cpp: In function ‘void SeekerUpdate(PyMOLGlobals*)’:
layer3/Seeker.cpp:1930:27: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
           if(row->ext_len < stop)
              ~~~~~~~~~~~~~^~~~~~
In file included from layer0/vla.h:7,
                 from layer1/Symmetry.h:26,
                 from layer1/PyMOLObject.h:27,
                 from layer1/Seq.h:21,
                 from layer3/Seeker.cpp:26:
layer3/Seeker.cpp: In function ‘void SeekerFree(PyMOLGlobals*)’:
layer3/Seeker.cpp:1964:14: warning: deleting object of polymorphic class type ‘CSeeker’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   DeleteP(G->Seeker);
              ^~~~~~
layer0/MemoryDebug.h:86:39: note: in definition of macro ‘DeleteP’
 #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
                                       ^~~
layer3/ExecutivePython.cpp: In function ‘pymol::Result<> ExecutiveSetRawAlignment(PyMOLGlobals*, pymol::zstring_view, PyObject*, pymol::zstring_view, int, int)’:
layer3/ExecutivePython.cpp:171:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare]
   for(size_t c = 0; c < n_cols; ++c) {
                     ~~^~~~~~~~
layer3/ExecutivePython.cpp:180:25: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare]
     for(size_t i = 0; i < n_idx; ++i) {
                       ~~^~~~~~~
layer3/ExecutivePython.cpp: In function ‘pymol::Result<> ExecutiveLoadObject(PyMOLGlobals*, const char*, PyObject*, int, int, int, int, int, int)’:
layer3/ExecutivePython.cpp:146:5: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 255 [-Wformat-truncation=]
     "%s", buf ENDFB(G);
     ^~~~  ~~~
In file included from /usr/include/stdio.h:873,
                 from /usr/include/c++/8/cstdio:42,
                 from /usr/include/c++/8/ext/string_conversions.h:43,
                 from /usr/include/c++/8/bits/basic_string.h:6404,
                 from /usr/include/c++/8/string:52,
                 from layer3/Executive.h:20,
                 from layer3/ExecutivePython.h:3,
                 from layer3/ExecutivePython.cpp:1:
/usr/include/bits/stdio2.h:68:35: note: ‘__builtin_snprintf’ output between 1 and 1024 bytes into a destination of size 255
   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        __glibc_objsize (__s), __fmt,
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        __va_arg_pack ());
        ~~~~~~~~~~~~~~~~~           
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer3/MaeExportHelpers.cpp -o build/temp.linux-x86_64-3.6/layer3/MaeExportHelpers.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer3/Selector.cpp -o build/temp.linux-x86_64-3.6/layer3/Selector.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer2/AtomInfo.h:23,
                 from layer3/MaeExportHelpers.h:11,
                 from layer3/MaeExportHelpers.cpp:11:
layer1/Setting.h: In function ‘int MaeExportGetAtomStyle(PyMOLGlobals*, const SeleCoordIterator&)’:
layer1/Setting.h:436:11: warning: ‘out’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   int i = *out;
           ^~~~
In file included from layer3/MaeExportHelpers.h:11,
                 from layer3/MaeExportHelpers.cpp:11:
layer2/AtomInfo.h:505:5: note: ‘out’ was declared here
   V out;
     ^~~
layer3/Selector.cpp: In member function ‘virtual bool SelectorAtomIterator::next()’:
layer3/Selector.cpp:185:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   if ((++a) >= selector->Table.size())
       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘bool SelectorIsSelectionDiscrete(PyMOLGlobals*, SelectorID_t, bool)’:
layer3/Selector.cpp:1028:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorClassifyAtoms(PyMOLGlobals*, int, int, ObjectMolecule*)’:
layer3/Selector.cpp:1082:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   while(a < I->Table.size()) {
         ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:1106:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
       while(a1 < I->Table.size()) {
             ~~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘const char* SelectorGetNameFromIndex(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:1519:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SelectionInfoRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(int a = 1; a < I->Info.size(); a++) {
                  ~~^~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)’:
layer3/Selector.cpp:1653:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
       for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:1680:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
             while(a1 < I->Table.size()) {
                   ~~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:1874:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
         for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                               ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘PyObject* SelectorColorectionGet(PyMOLGlobals*, const char*)’:
layer3/Selector.cpp:2687:18: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
     for(b = 0; b < n_used; b++) {
                ~~^~~~~~~~
layer3/Selector.cpp:2703:16: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   for(a = 0; a < n_used; a++) {
              ~~^~~~~~~~
layer3/Selector.cpp:2715:18: warning: comparison of integer expressions of different signedness: ‘ov_size’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
     for(b = 0; b < n_used; b++) {
                ~~^~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorColorectionApply(PyMOLGlobals*, PyObject*, const char*)’:
layer3/Selector.cpp:2763:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(b = 0; b < n_used; b++) {       /* update selection indices */
                ~~^~~~~~~~
layer3/Selector.cpp:2768:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:2772:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘ov_size’ {aka ‘long unsigned int’} [-Wsign-compare]
       for(b = 0; b < n_used; b++) {
                  ~~^~~~~~~~
layer3/Selector.cpp: In function ‘PyObject* SelectorSecretsAsPyList(PyMOLGlobals*)’:
layer3/Selector.cpp:2873:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SelectionInfoRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(int a = 0; a < I->Info.size(); a++) {
                  ~~^~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘PyObject* SelectorAsPyList(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:2952:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                         ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorCountStates(PyMOLGlobals*, int)’:
layer3/Selector.cpp:3446:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                         ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorCheckIntersection(PyMOLGlobals*, int, int)’:
layer3/Selector.cpp:3470:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorCountAtoms(PyMOLGlobals*, int, int)’:
layer3/Selector.cpp:3488:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘void SelectorSetDeleteFlagOnSelectionInObject(PyMOLGlobals*, int, ObjectMolecule*, signed char)’:
layer3/Selector.cpp:3503:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int* SelectorGetIndexVLAImpl(PyMOLGlobals*, CSelector*, SelectorID_t)’:
layer3/Selector.cpp:3589:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                         ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘void SelectorLogSele(PyMOLGlobals*, const char*)’:
layer3/Selector.cpp:3648:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
       for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘ObjectMolecule* SelectorGetSingleObjectMolecule(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:3813:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for (a = cNDummyAtoms; a < I->Table.size(); a++) {
                          ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘ObjectMolecule* SelectorGetFirstObjectMolecule(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:3843:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for (a = cNDummyAtoms; a < I->Table.size(); a++) {
                          ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘ObjectMolecule** SelectorGetObjectMoleculeVLA(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:3867:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                         ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorSubdivide(PyMOLGlobals*, const char*, SelectorID_t, SelectorID_t, SelectorID_t, SelectorID_t, const char*, const char*, int*)’:
layer3/Selector.cpp:4266:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
       for(a = 0; a < I->Table.size(); a++)
                  ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorGetSeleNCSet(PyMOLGlobals*, SelectorID_t)’:
layer3/Selector.cpp:4570:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorGetArrayNCSet(PyMOLGlobals*, const sele_array_t&, int)’:
layer3/Selector.cpp:4600:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(a = start; a < I->Table.size(); a++) {
                  ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorMapMaskVDW(PyMOLGlobals*, int, ObjectMapState*, float, int)’:
layer3/Selector.cpp:4761:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(a = 0; a < I->Table.size(); a++) {
              ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorMapGaussian(PyMOLGlobals*, int, ObjectMapState*, float, int, int, int, int, float)’:
layer3/Selector.cpp:5121:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(a = 0; a < I->Table.size(); a++) {
              ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:5165:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(a = 0; a < I->Table.size(); a++) {
              ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorMapCoulomb(PyMOLGlobals*, int, ObjectMapState*, float, int, int, int, float)’:
layer3/Selector.cpp:5373:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                         ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorCreateObjectMolecule(PyMOLGlobals*, SelectorID_t, const char*, int, int, int, int, int, int, int)’:
layer3/Selector.cpp:6062:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   if(ob)
   ^~
layer3/Selector.cpp:6066:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
     SelectorUpdateTable(G, source, -1);
     ^~~~~~~~~~~~~~~~~~~
layer3/Selector.cpp:6077:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
       for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In lambda function:
layer3/Selector.cpp:6103:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                         ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:6133:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMolecule*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(a = cNDummyModels; a < I->Obj.size(); a++) {  /* find bonds wholly contained in the selection */
                          ~~^~~~~~~~~~~~~~~
layer3/Selector.cpp:6159:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:6200:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:6224:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
       for(a = cNDummyAtoms; a < I->Table.size(); a++)  /* any selected atoms in this state? */
                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorEmbedSelection(PyMOLGlobals*, const int*, pymol::zstring_view, ObjectMolecule*, int, int)’:
layer3/Selector.cpp:6660:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   for(a = start; a < I->Table.size(); a++) {
                  ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘sele_array_t SelectorSelectFromTagDict(PyMOLGlobals*, const std::unordered_map<int, int>&)’:
layer3/Selector.cpp:6755:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
       for(int a = cNDummyAtoms; a < I->Table.size(); a++) {
                                 ~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/cassert:44,
                 from layer0/Field.h:24,
                 from layer0/Isosurf.h:24,
                 from layer2/ObjectMap.h:25,
                 from layer3/Selector.h:27,
                 from layer3/Selector.cpp:39:
layer3/Selector.cpp: In function ‘void SelectorUpdateTableSingleObject(PyMOLGlobals*, ObjectMolecule*, int, bool)’:
layer3/Selector.cpp:6997:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   assert(c == I->Table.size());
          ~~^~~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘sele_array_t SelectorGetSeleArrayForAtomIndices(CSelector*, ObjectMolecule*, const int*, int, bool)’:
layer3/Selector.cpp:7010:26: warning: comparison of integer expressions of different signedness: ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
   assert(I->Table.size() == cNDummyAtoms + obj->NAtom);
          ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorModulate1(PyMOLGlobals*, EvalElem*, int)’:
layer3/Selector.cpp:7293:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
           for (a = cNDummyAtoms; a < I->Table.size(); a++) {
                                  ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7316:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
                   for(a = 0; ok && a < I->Table.size(); a++) {
                                    ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7379:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
       for(a = 0; a < I->Table.size(); a++) {
                  ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7393:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
           for(a = 0; a < I->Table.size(); a++) {
                      ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7416:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
                   for(a = 0; ok && a < I->Table.size(); a++) {
                                    ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7457:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = cNDummyAtoms; a < I->Table.size(); a++)
                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorSelect0(PyMOLGlobals*, EvalElem*)’:
layer3/Selector.cpp:7490:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
       for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7501:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
       for(a = cNDummyAtoms; a < I->Table.size(); a++)
                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7506:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
       for(a = cNDummyAtoms; a < I->Table.size(); a++)
                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7513:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = cNDummyAtoms; a < I->Table.size(); a++)
                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7517:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = cNDummyAtoms; a < I->Table.size(); a++)
                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7521:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = cNDummyAtoms; a < I->Table.size(); a++)
                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7525:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = cNDummyAtoms; a < I->Table.size(); a++)
                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7529:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7538:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
       for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7555:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = cNDummyAtoms; a < I->Table.size(); a++)
                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7560:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = cNDummyAtoms; a < I->Table.size(); a++)
                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7565:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = cNDummyAtoms; a < I->Table.size(); a++)
                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7570:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = cNDummyAtoms; a < I->Table.size(); a++)
                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7575:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = cNDummyAtoms; a < I->Table.size(); a++)
                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7580:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = cNDummyAtoms; a < I->Table.size(); a++)
                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7585:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = cNDummyAtoms; a < I->Table.size(); a++)
                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7589:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = cNDummyAtoms; a < I->Table.size(); a++)
                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7593:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = cNDummyAtoms; a < I->Table.size(); a++)
                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7598:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = cNDummyAtoms; a < I->Table.size(); a++)
                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7603:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = cNDummyAtoms; a < I->Table.size(); a++)
                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7610:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7626:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7632:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = 0; a < I->Table.size(); a++) {
                ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7641:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = 0; a < I->Table.size(); a++) {
                ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7653:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
       for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:7673:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘pymol::Result<> SelectorSelect1(PyMOLGlobals*, EvalElem*, int)’:
layer3/Selector.cpp:8378:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMolecule*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
           for(a = cNDummyModels; a < I->Obj.size(); a++)
                                  ~~^~~~~~~~~~~~~~~
layer3/Selector.cpp:8388:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ObjectMolecule*>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
             else if(model > I->Obj.size())
                     ~~~~~~^~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorSelect2(PyMOLGlobals*, EvalElem*, int)’:
layer3/Selector.cpp:8470:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
       for(a = cNDummyAtoms; a < I->Table.size(); a++)
                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8474:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
         for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                               ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8522:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8533:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8544:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8555:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8570:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8581:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8592:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8603:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8618:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8629:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8640:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:8651:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
             for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                                   ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorLogic1(PyMOLGlobals*, EvalElem*, int)’:
layer3/Selector.cpp:9128:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
           for(a = 0; a < I->Table.size(); a++) {
                      ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:9157:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
                   for(a = 0; a < I->Table.size(); a++) {
                              ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘int SelectorOperator22(PyMOLGlobals*, EvalElem*, int)’:
layer3/Selector.cpp:9416:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
           for(a = 0; a < table_size; a++) {
                      ~~^~~~~~~~~~~~
layer3/Selector.cpp:9438:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
                   for(a = 0; a < I->Table.size(); a++) {
                              ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:9468:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
         for(a = 0; a < I->Table.size(); a++) {
                    ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:9473:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
       for(a = cNDummyAtoms; a < I->Table.size(); a++)
                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘pymol::Result<std::unique_ptr<int [], std::default_delete<int []> > > SelectorEvaluate(PyMOLGlobals*, std::vector<std::__cxx11::basic_string<char> >&, int, int)’:
layer3/Selector.cpp:9622:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   while(ok && c < word.size()) {
               ~~^~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘DistSet* SelectorGetDistSet(PyMOLGlobals*, DistSet*, int, int, int, int, int, float, float*)’:
layer3/Selector.cpp:10213:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘DistSet* SelectorGetAngleSet(PyMOLGlobals*, DistSet*, int, int, int, int, int, int, int, float*, int*)’:
layer3/Selector.cpp:10495:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:10519:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
       for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                             ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp: In function ‘DistSet* SelectorGetDihedralSet(PyMOLGlobals*, DistSet*, int, int, int, int, int, int, int, int, int, float*, int*)’:
layer3/Selector.cpp:10724:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
     for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                           ~~^~~~~~~~~~~~~~~~~
layer3/Selector.cpp:10801:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<TableRec>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
         for(a = cNDummyAtoms; a < I->Table.size(); a++) {
                               ~~^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/8/cassert:44,
                 from layer0/Field.h:24,
                 from layer0/Isosurf.h:24,
                 from layer2/ObjectMap.h:25,
                 from layer3/Selector.h:27,
                 from layer3/Selector.cpp:39:
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int, int}]’:
layer3/Selector.cpp:4800:18:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
     assert(sizeof...(pos) <= n_dim());
            ~~~~~~~~~~~~~~~^~~~~~~~~~
layer0/Field.h: In instantiation of ‘T* CField::ptr(SizeTs ...) [with T = float; SizeTs = {int, int, int}]’:
layer3/Selector.cpp:5309:20:   required from here
layer0/Field.h:100:27: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
layer3/Selector.cpp: In function ‘int SelectorAssignSS(PyMOLGlobals*, int, int, int, int, ObjectMolecule*, int)’:
layer3/Selector.cpp:1722:21: warning: ‘%s’ directive output may be truncated writing up to 255 bytes into a region of size 207 [-Wformat-truncation=]
                     " AssignSS-Warning: Ignoring incomplete residue /%s/%s/%s/%d%c ...\n",
                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:873,
                 from /usr/include/c++/8/cstdio:42,
                 from /usr/include/c++/8/ext/string_conversions.h:43,
                 from /usr/include/c++/8/bits/basic_string.h:6404,
                 from /usr/include/c++/8/string:52,
                 from /usr/include/c++/8/stdexcept:39,
                 from /usr/include/c++/8/array:39,
                 from /usr/include/c++/8/tuple:39,
                 from /usr/include/c++/8/functional:54,
                 from layer3/Selector.cpp:19:
/usr/include/bits/stdio2.h:68:35: note: ‘__builtin___snprintf_chk’ output 59 or more bytes (assuming 314) into a destination of size 255
   return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1,
          ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        __glibc_objsize (__s), __fmt,
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        __va_arg_pack ());
        ~~~~~~~~~~~~~~~~~           
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer3/SelectorTmp.cpp -o build/temp.linux-x86_64-3.6/layer3/SelectorTmp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer3/SpecRec.cpp -o build/temp.linux-x86_64-3.6/layer3/SpecRec.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer3/SpecRecSpecial.cpp -o build/temp.linux-x86_64-3.6/layer3/SpecRecSpecial.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer4/Cmd.cpp -o build/temp.linux-x86_64-3.6/layer4/Cmd.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer4/Cmd.cpp: In function ‘PyObject* CmdPushUndo(PyObject*, PyObject*)’:
layer4/Cmd.cpp:2216:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
     if(ok)
     ^~
layer4/Cmd.cpp:2218:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
       if(s0[0])
       ^~
layer4/Cmd.cpp: In function ‘PyObject* CmdGetMinMax(PyObject*, PyObject*)’:
layer4/Cmd.cpp:4469:7: warning: variable ‘ok’ set but not used [-Wunused-but-set-variable]
   int ok = false;
       ^~
In file included from layer4/Cmd.cpp:77:
layer1/PConv.h: In instantiation of ‘PyObject* PConvToPyObject(const std::array<_Tp, _Nm>&) [with T = float; long unsigned int N = 3; PyObject = _object]’:
layer4/Cmd.cpp:380:27:   required from ‘PyObject* APIResult(PyMOLGlobals*, pymol::Result<T>&) [with T = std::array<float, 3>; PyObject = _object]’
layer4/Cmd.cpp:4034:29:   required from here
layer1/PConv.h:259:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
   for (int i = 0; i < N; ++i) {
                   ~~^~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer4/Menu.cpp -o build/temp.linux-x86_64-3.6/layer4/Menu.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer4/PopUp.cpp -o build/temp.linux-x86_64-3.6/layer4/PopUp.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
In file included from layer0/OOMac.h:22,
                 from layer4/PopUp.cpp:23:
layer4/PopUp.cpp: In function ‘void PopUpFree(Block*)’:
layer4/PopUp.cpp:401:11: warning: deleting object of polymorphic class type ‘CPopUp’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   DeleteP(I);
           ^
layer0/MemoryDebug.h:86:39: note: in definition of macro ‘DeleteP’
 #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
                                       ^~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer5/PyMOL.cpp -o build/temp.linux-x86_64-3.6/layer5/PyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
layer5/PyMOL.cpp: In function ‘PyMOLreturn_status Loader(CPyMOL*, const char*, const char*, int, const char*, const char*, int, int, int, int, int, int)’:
layer5/PyMOL.cpp:1546:27: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘long unsigned int’ [-Wsign-compare]
         if((stop - start) >= sizeof(WordType))
            ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from layer5/PyMOL.cpp:23:
layer5/PyMOL.cpp: In function ‘void PyMOL_Stop(CPyMOL*)’:
layer5/PyMOL.cpp:1987:14: warning: deleting object of polymorphic class type ‘CMovie’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
   DeleteP(G->Movie);
              ^~~~~
layer0/MemoryDebug.h:86:39: note: in definition of macro ‘DeleteP’
 #define DeleteP(ptr) {if(ptr) {delete ptr;ptr=NULL;}}
                                       ^~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer5/TestPyMOL.cpp -o build/temp.linux-x86_64-3.6/layer5/TestPyMOL.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD layer5/main.cpp -o build/temp.linux-x86_64-3.6/layer5/main.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD ov/src/OVContext.cpp -o build/temp.linux-x86_64-3.6/ov/src/OVContext.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
ov/src/OVContext.cpp: In function ‘void OVContext_Del(OVContext*)’:
ov/src/OVContext.cpp:21:13: warning: variable ‘heap’ set but not used [-Wunused-but-set-variable]
     OVHeap *heap = I->heap;
             ^~~~
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD ov/src/OVHeap.cpp -o build/temp.linux-x86_64-3.6/ov/src/OVHeap.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD ov/src/OVHeapArray.cpp -o build/temp.linux-x86_64-3.6/ov/src/OVHeapArray.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD ov/src/OVLexicon.cpp -o build/temp.linux-x86_64-3.6/ov/src/OVLexicon.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD ov/src/OVOneToAny.cpp -o build/temp.linux-x86_64-3.6/ov/src/OVOneToAny.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD ov/src/OVOneToOne.cpp -o build/temp.linux-x86_64-3.6/ov/src/OVOneToOne.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD ov/src/OVRandom.cpp -o build/temp.linux-x86_64-3.6/ov/src/OVRandom.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -std=c++11 -fPIC -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -DPYMOL_OPENMP -D_PYMOL_VMD_PLUGINS -D_HAVE_LIBXML -DMMTF_MSGPACK_USE_CPP11 -D_PYMOL_NO_MAIN -D_PYMOL_NUMPY -Iinclude -Icontrib/uiuc/plugins/include -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Ibuild/generated -Icontrib/uiuc/plugins/molfile_plugin/src -Icontrib/mmtf-c -I/usr/lib64/python3.6/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include/libxml2 -I/usr/include/python3.6m -c -MMD ov/src/ov_utility.cpp -o build/temp.linux-x86_64-3.6/ov/src/ov_utility.o -Werror=return-type -Wunused-variable -Wno-switch -Wno-narrowing -Wno-char-subscripts -O2 -fopenmp
g++ -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-3.6/build/generated/ShaderText.o build/temp.linux-x86_64-3.6/contrib/mmtf-c/mmtf_parser.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/abinitplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/hash.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/inthash.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/molemeshplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/netcdfplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/offplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/pdbxplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/plyplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vasp5xdatcarplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/vtkplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o build/temp.linux-x86_64-3.6/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.linux-x86_64-3.6/layer0/Block.o build/temp.linux-x86_64-3.6/layer0/CarveHelper.o build/temp.linux-x86_64-3.6/layer0/ContourSurf.o build/temp.linux-x86_64-3.6/layer0/Crystal.o build/temp.linux-x86_64-3.6/layer0/Deferred.o build/temp.linux-x86_64-3.6/layer0/Err.o build/temp.linux-x86_64-3.6/layer0/Feedback.o build/temp.linux-x86_64-3.6/layer0/Field.o build/temp.linux-x86_64-3.6/layer0/File.o build/temp.linux-x86_64-3.6/layer0/GenericBuffer.o build/temp.linux-x86_64-3.6/layer0/GraphicsUtil.o build/temp.linux-x86_64-3.6/layer0/Isosurf.o build/temp.linux-x86_64-3.6/layer0/Map.o build/temp.linux-x86_64-3.6/layer0/Match.o build/temp.linux-x86_64-3.6/layer0/Matrix.o build/temp.linux-x86_64-3.6/layer0/MemoryDebug.o build/temp.linux-x86_64-3.6/layer0/MemoryUsage.o build/temp.linux-x86_64-3.6/layer0/MyPNG.o build/temp.linux-x86_64-3.6/layer0/Parse.o build/temp.linux-x86_64-3.6/layer0/Pixmap.o build/temp.linux-x86_64-3.6/layer0/PostProcess.o build/temp.linux-x86_64-3.6/layer0/ShaderMgr.o build/temp.linux-x86_64-3.6/layer0/ShaderPrg.o build/temp.linux-x86_64-3.6/layer0/Sphere.o build/temp.linux-x86_64-3.6/layer0/Tetsurf.o build/temp.linux-x86_64-3.6/layer0/Texture.o build/temp.linux-x86_64-3.6/layer0/Tracker.o build/temp.linux-x86_64-3.6/layer0/Triangle.o build/temp.linux-x86_64-3.6/layer0/Util.o build/temp.linux-x86_64-3.6/layer0/Util2.o build/temp.linux-x86_64-3.6/layer0/Vector.o build/temp.linux-x86_64-3.6/layer0/Word.o build/temp.linux-x86_64-3.6/layer0/ccealignmodule.o build/temp.linux-x86_64-3.6/layer0/marching_cubes.o build/temp.linux-x86_64-3.6/layer0/os_gl.o build/temp.linux-x86_64-3.6/layer1/Basis.o build/temp.linux-x86_64-3.6/layer1/ButMode.o build/temp.linux-x86_64-3.6/layer1/CGO.o build/temp.linux-x86_64-3.6/layer1/COLLADA.o build/temp.linux-x86_64-3.6/layer1/Character.o build/temp.linux-x86_64-3.6/layer1/Color.o build/temp.linux-x86_64-3.6/layer1/Control.o build/temp.linux-x86_64-3.6/layer1/Extrude.o build/temp.linux-x86_64-3.6/layer1/Font.o build/temp.linux-x86_64-3.6/layer1/FontGLUT.o build/temp.linux-x86_64-3.6/layer1/FontGLUT8x13.o build/temp.linux-x86_64-3.6/layer1/FontGLUT9x15.o build/temp.linux-x86_64-3.6/layer1/FontGLUTHel10.o build/temp.linux-x86_64-3.6/layer1/FontGLUTHel12.o build/temp.linux-x86_64-3.6/layer1/FontGLUTHel18.o build/temp.linux-x86_64-3.6/layer1/FontType.o build/temp.linux-x86_64-3.6/layer1/Movie.o build/temp.linux-x86_64-3.6/layer1/Ortho.o build/temp.linux-x86_64-3.6/layer1/P.o build/temp.linux-x86_64-3.6/layer1/PConv.o build/temp.linux-x86_64-3.6/layer1/Picking.o build/temp.linux-x86_64-3.6/layer1/Pop.o build/temp.linux-x86_64-3.6/layer1/PyMOLObject.o build/temp.linux-x86_64-3.6/layer1/Ray.o build/temp.linux-x86_64-3.6/layer1/Rep.o build/temp.linux-x86_64-3.6/layer1/Scene.o build/temp.linux-x86_64-3.6/layer1/SceneMouse.o build/temp.linux-x86_64-3.6/layer1/ScenePicking.o build/temp.linux-x86_64-3.6/layer1/SceneRay.o build/temp.linux-x86_64-3.6/layer1/SceneRender.o build/temp.linux-x86_64-3.6/layer1/ScrollBar.o build/temp.linux-x86_64-3.6/layer1/Seq.o build/temp.linux-x86_64-3.6/layer1/Setting.o build/temp.linux-x86_64-3.6/layer1/Shaker.o build/temp.linux-x86_64-3.6/layer1/SymOp.o build/temp.linux-x86_64-3.6/layer1/SymOpPConv.o build/temp.linux-x86_64-3.6/layer1/SymOpTools.o build/temp.linux-x86_64-3.6/layer1/Symmetry.o build/temp.linux-x86_64-3.6/layer1/Text.o build/temp.linux-x86_64-3.6/layer1/TypeFace.o build/temp.linux-x86_64-3.6/layer1/View.o build/temp.linux-x86_64-3.6/layer1/Wizard.o build/temp.linux-x86_64-3.6/layer2/AssemblyHelpers.o build/temp.linux-x86_64-3.6/layer2/AtomInfo.o build/temp.linux-x86_64-3.6/layer2/AtomInfoHistory.o build/temp.linux-x86_64-3.6/layer2/BondTypeHistory.o build/temp.linux-x86_64-3.6/layer2/CifFile.o build/temp.linux-x86_64-3.6/layer2/CifMoleculeReader.o build/temp.linux-x86_64-3.6/layer2/CoordSet.o build/temp.linux-x86_64-3.6/layer2/DistSet.o build/temp.linux-x86_64-3.6/layer2/GadgetSet.o build/temp.linux-x86_64-3.6/layer2/HydrogenAdder.o build/temp.linux-x86_64-3.6/layer2/MmodTyping.o build/temp.linux-x86_64-3.6/layer2/MmtfMoleculeReader.o build/temp.linux-x86_64-3.6/layer2/Mol2Typing.o build/temp.linux-x86_64-3.6/layer2/MolV3000.o build/temp.linux-x86_64-3.6/layer2/ObjectAlignment.o build/temp.linux-x86_64-3.6/layer2/ObjectCGO.o build/temp.linux-x86_64-3.6/layer2/ObjectCallback.o build/temp.linux-x86_64-3.6/layer2/ObjectDist.o build/temp.linux-x86_64-3.6/layer2/ObjectGadget.o build/temp.linux-x86_64-3.6/layer2/ObjectGadgetRamp.o build/temp.linux-x86_64-3.6/layer2/ObjectGroup.o build/temp.linux-x86_64-3.6/layer2/ObjectMap.o build/temp.linux-x86_64-3.6/layer2/ObjectMesh.o build/temp.linux-x86_64-3.6/layer2/ObjectMolecule.o build/temp.linux-x86_64-3.6/layer2/ObjectMolecule2.o build/temp.linux-x86_64-3.6/layer2/ObjectMolecule3.o build/temp.linux-x86_64-3.6/layer2/ObjectSlice.o build/temp.linux-x86_64-3.6/layer2/ObjectSurface.o build/temp.linux-x86_64-3.6/layer2/ObjectVolume.o build/temp.linux-x86_64-3.6/layer2/RepAngle.o build/temp.linux-x86_64-3.6/layer2/RepCartoon.o build/temp.linux-x86_64-3.6/layer2/RepCylBond.o build/temp.linux-x86_64-3.6/layer2/RepDihedral.o build/temp.linux-x86_64-3.6/layer2/RepDistDash.o build/temp.linux-x86_64-3.6/layer2/RepDistLabel.o build/temp.linux-x86_64-3.6/layer2/RepDot.o build/temp.linux-x86_64-3.6/layer2/RepEllipsoid.o build/temp.linux-x86_64-3.6/layer2/RepLabel.o build/temp.linux-x86_64-3.6/layer2/RepMesh.o build/temp.linux-x86_64-3.6/layer2/RepNonbonded.o build/temp.linux-x86_64-3.6/layer2/RepNonbondedSphere.o build/temp.linux-x86_64-3.6/layer2/RepRibbon.o build/temp.linux-x86_64-3.6/layer2/RepSphere.o build/temp.linux-x86_64-3.6/layer2/RepSphereGenerate.o build/temp.linux-x86_64-3.6/layer2/RepSphereImmediate.o build/temp.linux-x86_64-3.6/layer2/RepSurface.o build/temp.linux-x86_64-3.6/layer2/RepWireBond.o build/temp.linux-x86_64-3.6/layer2/Sculpt.o build/temp.linux-x86_64-3.6/layer2/SculptCache.o build/temp.linux-x86_64-3.6/layer2/SideChainHelper.o build/temp.linux-x86_64-3.6/layer2/VFont.o build/temp.linux-x86_64-3.6/layer3/AtomIterators.o build/temp.linux-x86_64-3.6/layer3/CifDataValueFormatter.o build/temp.linux-x86_64-3.6/layer3/Editor.o build/temp.linux-x86_64-3.6/layer3/Executive.o build/temp.linux-x86_64-3.6/layer3/ExecutivePython.o build/temp.linux-x86_64-3.6/layer3/MaeExportHelpers.o build/temp.linux-x86_64-3.6/layer3/MoleculeExporter.o build/temp.linux-x86_64-3.6/layer3/MovieScene.o build/temp.linux-x86_64-3.6/layer3/PlugIOManager.o build/temp.linux-x86_64-3.6/layer3/RingFinder.o build/temp.linux-x86_64-3.6/layer3/Seeker.o build/temp.linux-x86_64-3.6/layer3/Selector.o build/temp.linux-x86_64-3.6/layer3/SelectorTmp.o build/temp.linux-x86_64-3.6/layer3/SpecRec.o build/temp.linux-x86_64-3.6/layer3/SpecRecSpecial.o build/temp.linux-x86_64-3.6/layer4/Cmd.o build/temp.linux-x86_64-3.6/layer4/Menu.o build/temp.linux-x86_64-3.6/layer4/PopUp.o build/temp.linux-x86_64-3.6/layer5/PyMOL.o build/temp.linux-x86_64-3.6/layer5/TestPyMOL.o build/temp.linux-x86_64-3.6/layer5/main.o build/temp.linux-x86_64-3.6/ov/src/OVContext.o build/temp.linux-x86_64-3.6/ov/src/OVHeap.o build/temp.linux-x86_64-3.6/ov/src/OVHeapArray.o build/temp.linux-x86_64-3.6/ov/src/OVLexicon.o build/temp.linux-x86_64-3.6/ov/src/OVOneToAny.o build/temp.linux-x86_64-3.6/ov/src/OVOneToOne.o build/temp.linux-x86_64-3.6/ov/src/OVRandom.o build/temp.linux-x86_64-3.6/ov/src/ov_utility.o -L/usr/lib64 -L/usr/lib -L/usr/lib64 -lpng -lfreetype -lxml2 -lGL -lGLEW -lnetcdf -lpython3.6m -o build/lib.linux-x86_64-3.6/pymol/_cmd.cpython-36m-x86_64-linux-gnu.so -fopenmp
building 'chempy.champ._champ' extension
creating build/temp.linux-x86_64-3.6/contrib/champ
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -Icontrib/champ -I/usr/include/python3.6m -c -MMD contrib/champ/champ.c -o build/temp.linux-x86_64-3.6/contrib/champ/champ.o
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -Icontrib/champ -I/usr/include/python3.6m -c -MMD contrib/champ/chiral.c -o build/temp.linux-x86_64-3.6/contrib/champ/chiral.o
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -Icontrib/champ -I/usr/include/python3.6m -c -MMD contrib/champ/err2.c -o build/temp.linux-x86_64-3.6/contrib/champ/err2.o
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -Icontrib/champ -I/usr/include/python3.6m -c -MMD contrib/champ/feedback2.c -o build/temp.linux-x86_64-3.6/contrib/champ/feedback2.o
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -Icontrib/champ -I/usr/include/python3.6m -c -MMD contrib/champ/list.c -o build/temp.linux-x86_64-3.6/contrib/champ/list.o
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -Icontrib/champ -I/usr/include/python3.6m -c -MMD contrib/champ/os_memory.c -o build/temp.linux-x86_64-3.6/contrib/champ/os_memory.o
contrib/champ/os_memory.c: In function ‘OSMemoryZero’:
contrib/champ/os_memory.c:55:18: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
   while(count&&(((int)p)&mask)) {
                  ^
contrib/champ/os_memory.c: In function ‘OSMemoryHashAdd’:
contrib/champ/os_memory.c:137:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
   hash=(int)rec;
        ^
contrib/champ/os_memory.c: In function ‘OSMemoryHashRemove’:
contrib/champ/os_memory.c:150:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
   hash=(int)rec;
        ^
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -Icontrib/champ -I/usr/include/python3.6m -c -MMD contrib/champ/sort.c -o build/temp.linux-x86_64-3.6/contrib/champ/sort.o
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -Icontrib/champ -I/usr/include/python3.6m -c -MMD contrib/champ/strblock.c -o build/temp.linux-x86_64-3.6/contrib/champ/strblock.o
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -Icontrib/champ -I/usr/include/python3.6m -c -MMD contrib/champ/vla.c -o build/temp.linux-x86_64-3.6/contrib/champ/vla.o
gcc -pthread -DDYNAMIC_ANNOTATIONS_ENABLED=1 -DNDEBUG -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -D_GNU_SOURCE -fPIC -fwrapv -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fPIC -Icontrib/champ -I/usr/include/python3.6m -c -MMD contrib/champ/champ_module.c -o build/temp.linux-x86_64-3.6/contrib/champ/champ_module.o
gcc -pthread -shared -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -g -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection build/temp.linux-x86_64-3.6/contrib/champ/champ.o build/temp.linux-x86_64-3.6/contrib/champ/champ_module.o build/temp.linux-x86_64-3.6/contrib/champ/chiral.o build/temp.linux-x86_64-3.6/contrib/champ/err2.o build/temp.linux-x86_64-3.6/contrib/champ/feedback2.o build/temp.linux-x86_64-3.6/contrib/champ/list.o build/temp.linux-x86_64-3.6/contrib/champ/os_memory.o build/temp.linux-x86_64-3.6/contrib/champ/sort.o build/temp.linux-x86_64-3.6/contrib/champ/strblock.o build/temp.linux-x86_64-3.6/contrib/champ/vla.o -L/usr/lib64 -lpython3.6m -o build/lib.linux-x86_64-3.6/chempy/champ/_champ.cpython-36m-x86_64-linux-gnu.so
+ sleep 1
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.PDDMay
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64
++ dirname /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64
+ cd pymol-open-source-2.5.0
+ CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection'
+ LDFLAGS='-Wl,-z,relro  -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld'
+ /usr/bin/python3.6 setup.py install -O1 --skip-build --root /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64 --use-msgpackc=c++11 --use-openmp=yes --pymol-path=/usr/lib64/python3.6/site-packages/pymol
running install
running install_lib
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/bmin
copying build/lib.linux-x86_64-3.6/chempy/bmin/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/bmin
copying build/lib.linux-x86_64-3.6/chempy/bmin/commands.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/bmin
copying build/lib.linux-x86_64-3.6/chempy/bmin/realtime.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/bmin
copying build/lib.linux-x86_64-3.6/chempy/bmin/state.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/bmin
copying build/lib.linux-x86_64-3.6/chempy/bmin/util.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/bmin
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/champ
copying build/lib.linux-x86_64-3.6/chempy/champ/_champ.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/champ
copying build/lib.linux-x86_64-3.6/chempy/champ/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/champ
copying build/lib.linux-x86_64-3.6/chempy/champ/amber99.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/champ
copying build/lib.linux-x86_64-3.6/chempy/champ/assign.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/champ
copying build/lib.linux-x86_64-3.6/chempy/champ/formal_charges.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/champ
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/fast
copying build/lib.linux-x86_64-3.6/chempy/fast/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/fast
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/fragments
copying build/lib.linux-x86_64-3.6/chempy/fragments/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/fragments
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/mmtf
copying build/lib.linux-x86_64-3.6/chempy/mmtf/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/mmtf
copying build/lib.linux-x86_64-3.6/chempy/mmtf/io.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/mmtf
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/tinker
copying build/lib.linux-x86_64-3.6/chempy/tinker/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/tinker
copying build/lib.linux-x86_64-3.6/chempy/tinker/amber.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/tinker
copying build/lib.linux-x86_64-3.6/chempy/tinker/keyword.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/tinker
copying build/lib.linux-x86_64-3.6/chempy/tinker/realtime.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/tinker
copying build/lib.linux-x86_64-3.6/chempy/tinker/state.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/tinker
copying build/lib.linux-x86_64-3.6/chempy/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/arc.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/bond_amber.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/bond_mmff.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/bonds.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/brick.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/cc1.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/charge.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/cif.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/cpv.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/dictdb.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/gamess1.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/gms.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/hetatm.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/io.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/lst.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/mae.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/map.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/mass.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/mmd.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/models.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/mol.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/mol2.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/neighbor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/pdb.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/pkl.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/place.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/protein.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/protein_amber.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/protein_amber99.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/protein_mmff.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/protein_residues.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/sdf.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/solvate.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/water_amber.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/water_residues.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
copying build/lib.linux-x86_64-3.6/chempy/xyz.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-3.6/pmg_qt/forms/askpartial.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-3.6/pmg_qt/forms/change_confirm.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-3.6/pmg_qt/forms/colors.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-3.6/pmg_qt/forms/create_shortcut.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-3.6/pmg_qt/forms/fetch.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-3.6/pmg_qt/forms/help_shortcut.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-3.6/pmg_qt/forms/load_aln.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-3.6/pmg_qt/forms/load_mae.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-3.6/pmg_qt/forms/load_map.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-3.6/pmg_qt/forms/load_mtz.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-3.6/pmg_qt/forms/load_traj.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-3.6/pmg_qt/forms/movieexport.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-3.6/pmg_qt/forms/pluginitem.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-3.6/pmg_qt/forms/pluginmanager.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-3.6/pmg_qt/forms/png.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-3.6/pmg_qt/forms/props.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-3.6/pmg_qt/forms/render.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-3.6/pmg_qt/forms/save_molecule.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-3.6/pmg_qt/forms/save_object.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-3.6/pmg_qt/forms/shortcut_menu.ui -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/forms
copying build/lib.linux-x86_64-3.6/pmg_qt/forms/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/forms
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/syntax
copying build/lib.linux-x86_64-3.6/pmg_qt/syntax/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/syntax
copying build/lib.linux-x86_64-3.6/pmg_qt/syntax/pml.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/syntax
copying build/lib.linux-x86_64-3.6/pmg_qt/syntax/pmlparser.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/syntax
copying build/lib.linux-x86_64-3.6/pmg_qt/syntax/python.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/syntax
copying build/lib.linux-x86_64-3.6/pmg_qt/TextEditor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt
copying build/lib.linux-x86_64-3.6/pmg_qt/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt
copying build/lib.linux-x86_64-3.6/pmg_qt/advanced_settings_gui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt
copying build/lib.linux-x86_64-3.6/pmg_qt/builder.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt
copying build/lib.linux-x86_64-3.6/pmg_qt/file_dialogs.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt
copying build/lib.linux-x86_64-3.6/pmg_qt/keymapping.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt
copying build/lib.linux-x86_64-3.6/pmg_qt/mimic_pmg_tk.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt
copying build/lib.linux-x86_64-3.6/pmg_qt/mimic_tk.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt
copying build/lib.linux-x86_64-3.6/pmg_qt/properties_dialog.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt
copying build/lib.linux-x86_64-3.6/pmg_qt/pymol_gl_widget.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt
copying build/lib.linux-x86_64-3.6/pmg_qt/pymol_qt_gui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt
copying build/lib.linux-x86_64-3.6/pmg_qt/shortcut_menu_gui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt
copying build/lib.linux-x86_64-3.6/pmg_qt/volume.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk/skins
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk/skins/demo
copying build/lib.linux-x86_64-3.6/pmg_tk/skins/demo/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk/skins/demo
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk/skins/normal
copying build/lib.linux-x86_64-3.6/pmg_tk/skins/normal/ModalWindow.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk/skins/normal
copying build/lib.linux-x86_64-3.6/pmg_tk/skins/normal/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk/skins/normal
copying build/lib.linux-x86_64-3.6/pmg_tk/skins/normal/builder.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk/skins/normal
copying build/lib.linux-x86_64-3.6/pmg_tk/skins/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk/skins
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk/startup
copying build/lib.linux-x86_64-3.6/pmg_tk/startup/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk/startup
copying build/lib.linux-x86_64-3.6/pmg_tk/ColorEditor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk
copying build/lib.linux-x86_64-3.6/pmg_tk/Demo.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk
copying build/lib.linux-x86_64-3.6/pmg_tk/PyMOLMapLoad.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk
copying build/lib.linux-x86_64-3.6/pmg_tk/SetEditor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk
copying build/lib.linux-x86_64-3.6/pmg_tk/Setting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk
copying build/lib.linux-x86_64-3.6/pmg_tk/TextEditor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk
copying build/lib.linux-x86_64-3.6/pmg_tk/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk
copying build/lib.linux-x86_64-3.6/pmg_tk/volume.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk
copying build/lib.linux-x86_64-3.6/pmg_tk/PMGApp.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/_cmd.cpython-36m-x86_64-linux-gnu.so -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/Qt
copying build/lib.linux-x86_64-3.6/pymol/Qt/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/Qt
copying build/lib.linux-x86_64-3.6/pymol/Qt/utils.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/Qt
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/plugins
copying build/lib.linux-x86_64-3.6/pymol/plugins/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/plugins
copying build/lib.linux-x86_64-3.6/pymol/plugins/installation.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/plugins
copying build/lib.linux-x86_64-3.6/pymol/plugins/legacysupport.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/plugins
copying build/lib.linux-x86_64-3.6/pymol/plugins/managergui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/plugins
copying build/lib.linux-x86_64-3.6/pymol/plugins/managergui_qt.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/plugins
copying build/lib.linux-x86_64-3.6/pymol/plugins/repository.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/plugins
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/stereochemistry
copying build/lib.linux-x86_64-3.6/pymol/stereochemistry/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/stereochemistry
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard
copying build/lib.linux-x86_64-3.6/pymol/wizard/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard
copying build/lib.linux-x86_64-3.6/pymol/wizard/annotation.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard
copying build/lib.linux-x86_64-3.6/pymol/wizard/appearance.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard
copying build/lib.linux-x86_64-3.6/pymol/wizard/benchmark.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard
copying build/lib.linux-x86_64-3.6/pymol/wizard/box.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard
copying build/lib.linux-x86_64-3.6/pymol/wizard/charge.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard
copying build/lib.linux-x86_64-3.6/pymol/wizard/cleanup.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard
copying build/lib.linux-x86_64-3.6/pymol/wizard/command.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard
copying build/lib.linux-x86_64-3.6/pymol/wizard/demo.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard
copying build/lib.linux-x86_64-3.6/pymol/wizard/density.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard
copying build/lib.linux-x86_64-3.6/pymol/wizard/distance.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard
copying build/lib.linux-x86_64-3.6/pymol/wizard/dragging.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard
copying build/lib.linux-x86_64-3.6/pymol/wizard/filter.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard
copying build/lib.linux-x86_64-3.6/pymol/wizard/label.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard
copying build/lib.linux-x86_64-3.6/pymol/wizard/measurement.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard
copying build/lib.linux-x86_64-3.6/pymol/wizard/message.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard
copying build/lib.linux-x86_64-3.6/pymol/wizard/mutagenesis.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard
copying build/lib.linux-x86_64-3.6/pymol/wizard/nucmutagenesis.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard
copying build/lib.linux-x86_64-3.6/pymol/wizard/openvr.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard
copying build/lib.linux-x86_64-3.6/pymol/wizard/pair_fit.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard
copying build/lib.linux-x86_64-3.6/pymol/wizard/pseudoatom.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard
copying build/lib.linux-x86_64-3.6/pymol/wizard/renaming.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard
copying build/lib.linux-x86_64-3.6/pymol/wizard/sculpting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard
copying build/lib.linux-x86_64-3.6/pymol/wizard/security.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard
copying build/lib.linux-x86_64-3.6/pymol/wizard/stereodemo.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard
copying build/lib.linux-x86_64-3.6/pymol/wizard/toggle.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard
copying build/lib.linux-x86_64-3.6/pymol/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/__main__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/_gui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/api.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/callback.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/cgo.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/checking.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/cmd.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/colorprinting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/colorramping.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/commanding.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/completing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/computing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/constants.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/constants_palette.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/controlling.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/creating.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/diagnosing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/editing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/editor.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/experimenting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/exporting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/externing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/feedingback.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/fitting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/gui.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/headering.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/helping.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/importing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/internal.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/invocation.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/keyboard.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/keywords.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/lazyio.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/locking.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/menu.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/monitoring.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/morphing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/movie.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/moving.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/mpeg_encode.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/parser.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/parsing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/povray.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/preset.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/pymolhttpd.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/querying.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/rpc.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/save_shortcut.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/selecting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/selector.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/seqalign.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/setting.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/shortcut.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/shortcut_dict.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/shortcut_manager.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/util.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/vfont.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/viewing.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/wizarding.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/xray.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying build/lib.linux-x86_64-3.6/pymol/xwin.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol2
copying build/lib.linux-x86_64-3.6/pymol2/__init__.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol2
copying build/lib.linux-x86_64-3.6/pymol2/cmd2.py -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol2
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/bmin/__init__.py to __init__.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/bmin/commands.py to commands.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/bmin/realtime.py to realtime.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/bmin/state.py to state.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/bmin/util.py to util.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/champ/__init__.py to __init__.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/champ/amber99.py to amber99.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/champ/assign.py to assign.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/champ/formal_charges.py to formal_charges.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/fast/__init__.py to __init__.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/fragments/__init__.py to __init__.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/mmtf/__init__.py to __init__.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/mmtf/io.py to io.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/tinker/__init__.py to __init__.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/tinker/amber.py to amber.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/tinker/keyword.py to keyword.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/tinker/realtime.py to realtime.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/tinker/state.py to state.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/__init__.py to __init__.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/arc.py to arc.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/bond_amber.py to bond_amber.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/bond_mmff.py to bond_mmff.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/bonds.py to bonds.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/brick.py to brick.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/cc1.py to cc1.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/charge.py to charge.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/cif.py to cif.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/cpv.py to cpv.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/dictdb.py to dictdb.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/gamess1.py to gamess1.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/gms.py to gms.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/hetatm.py to hetatm.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/io.py to io.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/lst.py to lst.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/mae.py to mae.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/map.py to map.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/mass.py to mass.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/mmd.py to mmd.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/models.py to models.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/mol.py to mol.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/mol2.py to mol2.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/neighbor.py to neighbor.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/pdb.py to pdb.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/pkl.py to pkl.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/place.py to place.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/protein.py to protein.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/protein_amber.py to protein_amber.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/protein_amber99.py to protein_amber99.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/protein_mmff.py to protein_mmff.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/protein_residues.py to protein_residues.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/sdf.py to sdf.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/solvate.py to solvate.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/water_amber.py to water_amber.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/water_residues.py to water_residues.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/xyz.py to xyz.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/forms/__init__.py to __init__.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/syntax/__init__.py to __init__.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/syntax/pml.py to pml.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/syntax/pmlparser.py to pmlparser.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/syntax/python.py to python.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/TextEditor.py to TextEditor.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/__init__.py to __init__.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/advanced_settings_gui.py to advanced_settings_gui.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/builder.py to builder.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/file_dialogs.py to file_dialogs.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/keymapping.py to keymapping.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/mimic_pmg_tk.py to mimic_pmg_tk.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/mimic_tk.py to mimic_tk.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/properties_dialog.py to properties_dialog.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/pymol_gl_widget.py to pymol_gl_widget.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/pymol_qt_gui.py to pymol_qt_gui.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/shortcut_menu_gui.py to shortcut_menu_gui.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_qt/volume.py to volume.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk/skins/demo/__init__.py to __init__.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk/skins/normal/__init__.py to __init__.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk/skins/normal/builder.py to builder.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk/skins/__init__.py to __init__.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk/startup/__init__.py to __init__.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk/ColorEditor.py to ColorEditor.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk/Demo.py to Demo.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk/SetEditor.py to SetEditor.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk/Setting.py to Setting.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk/TextEditor.py to TextEditor.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk/__init__.py to __init__.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk/volume.py to volume.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pmg_tk/PMGApp.py to PMGApp.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/Qt/__init__.py to __init__.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/Qt/utils.py to utils.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/plugins/__init__.py to __init__.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/plugins/installation.py to installation.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/plugins/legacysupport.py to legacysupport.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/plugins/managergui.py to managergui.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/plugins/managergui_qt.py to managergui_qt.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/plugins/repository.py to repository.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/stereochemistry/__init__.py to __init__.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard/__init__.py to __init__.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard/annotation.py to annotation.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard/appearance.py to appearance.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard/benchmark.py to benchmark.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard/box.py to box.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard/charge.py to charge.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard/cleanup.py to cleanup.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard/command.py to command.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard/demo.py to demo.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard/density.py to density.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard/distance.py to distance.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard/dragging.py to dragging.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard/filter.py to filter.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard/label.py to label.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard/measurement.py to measurement.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard/message.py to message.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard/mutagenesis.py to mutagenesis.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard/nucmutagenesis.py to nucmutagenesis.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard/openvr.py to openvr.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard/pair_fit.py to pair_fit.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard/pseudoatom.py to pseudoatom.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard/renaming.py to renaming.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard/sculpting.py to sculpting.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard/security.py to security.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard/stereodemo.py to stereodemo.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizard/toggle.py to toggle.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/__init__.py to __init__.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/__main__.py to __main__.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/_gui.py to _gui.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/api.py to api.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/callback.py to callback.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/cgo.py to cgo.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/checking.py to checking.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/cmd.py to cmd.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/colorprinting.py to colorprinting.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/colorramping.py to colorramping.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/commanding.py to commanding.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/completing.py to completing.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/computing.py to computing.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/constants.py to constants.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/constants_palette.py to constants_palette.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/controlling.py to controlling.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/creating.py to creating.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/diagnosing.py to diagnosing.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/editing.py to editing.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/editor.py to editor.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/experimenting.py to experimenting.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/exporting.py to exporting.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/externing.py to externing.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/feedingback.py to feedingback.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/fitting.py to fitting.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/gui.py to gui.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/headering.py to headering.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/helping.py to helping.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/importing.py to importing.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/internal.py to internal.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/invocation.py to invocation.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/keyboard.py to keyboard.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/keywords.py to keywords.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/lazyio.py to lazyio.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/locking.py to locking.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/menu.py to menu.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/monitoring.py to monitoring.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/morphing.py to morphing.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/movie.py to movie.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/moving.py to moving.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/mpeg_encode.py to mpeg_encode.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/parser.py to parser.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/parsing.py to parsing.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/povray.py to povray.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/preset.py to preset.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/pymolhttpd.py to pymolhttpd.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/querying.py to querying.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/rpc.py to rpc.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/save_shortcut.py to save_shortcut.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/selecting.py to selecting.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/selector.py to selector.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/seqalign.py to seqalign.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/setting.py to setting.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/shortcut.py to shortcut.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/shortcut_dict.py to shortcut_dict.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/shortcut_manager.py to shortcut_manager.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/util.py to util.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/vfont.py to vfont.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/viewing.py to viewing.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/wizarding.py to wizarding.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/xray.py to xray.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/xwin.py to xwin.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol2/__init__.py to __init__.cpython-36.pyc
byte-compiling /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol2/cmd2.py to cmd2.cpython-36.pyc
writing byte-compilation script '/tmp/tmph9pb5zs8.py'
/usr/bin/python3.6 /tmp/tmph9pb5zs8.py
removing /tmp/tmph9pb5zs8.py
running install_egg_info
Writing /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol-2.5.0-py3.6.egg-info
copying LICENSE -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol
copying data -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/data
copying test -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/test
copying examples -> /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/examples
creating /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/bin
+ echo '#!/bin/sh'
+ echo 'export PYMOL_PATH=/usr/lib64/python3.6/site-packages/pymol'
+ echo 'exec /usr/bin/python3.6 /usr/lib64/python3.6/site-packages/pymol/__init__.py "$@"'
+ cp -a data examples test /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/examples/devel/link_demo.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/examples/devel/particle01.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/examples/devel/particle02.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/test/inp/B03.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/test/inp/B05.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/test/inp/B11.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/test/ref/T01.log
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/pymol_path/examples/devel/link_demo.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/pymol_path/examples/devel/particle01.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/pymol_path/examples/devel/particle02.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/pymol_path/test/inp/B03.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/pymol_path/test/inp/B05.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/pymol_path/test/inp/B11.py
+ rm -f /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/pymol_path/test/ref/T01.log
+ mkdir -p /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/bin
+ install -p -m 755 pymol /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/bin/
+ desktop-file-install --vendor= --dir=/builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/share/applications /builddir/build/SOURCES/pymol.desktop
+ mkdir -p /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/share/pixmaps
+ install -p -m 644 /builddir/build/SOURCES/pymol.png /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/share/pixmaps/
+ mkdir -p /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/share/metainfo
+ install -p -m 644 /builddir/build/SOURCES/pymol.appdata.xml /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/share/metainfo/
+ appstream-util validate-relax --nonet /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64//usr/share/metainfo/pymol.appdata.xml
/builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64//usr/share/metainfo/pymol.appdata.xml: OK
+ /usr/lib/rpm/find-debuginfo.sh -j2 --strict-build-id -m -i --build-id-seed 2.5.0-6.el8 --unique-debug-suffix -2.5.0-6.el8.x86_64 --unique-debug-src-base pymol-2.5.0-6.el8.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/pymol-open-source-2.5.0
extracting debug info from /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/pymol/_cmd.cpython-36m-x86_64-linux-gnu.so
extracting debug info from /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6/site-packages/chempy/champ/_champ.cpython-36m-x86_64-linux-gnu.so
/usr/lib/rpm/sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match.
51209 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
/sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile '' 1
Bytecompiling .py files below /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib/debug/usr/lib64/python3.6 using /usr/libexec/platform-python
Bytecompiling .py files below /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/lib64/python3.6 using /usr/libexec/platform-python
+ /usr/lib/rpm/brp-python-hardlink
+ PYTHON3=/usr/bin/python3.6
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
*** WARNING: ./usr/src/debug/pymol-2.5.0-6.el8.x86_64/layer3/MaeExportHelpers.h is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/pymol-2.5.0-6.el8.x86_64/layer3/MaeExportHelpers.cpp is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/pymol-2.5.0-6.el8.x86_64/layer0/GraphicsUtil.h is executable but has no shebang, removing executable bit
*** WARNING: ./usr/src/debug/pymol-2.5.0-6.el8.x86_64/layer0/GraphicsUtil.cpp is executable but has no shebang, removing executable bit
Processing files: pymol-2.5.0-6.el8.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.T4JlZ0
+ umask 022
+ cd /builddir/build/BUILD
+ cd pymol-open-source-2.5.0
+ DOCDIR=/builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/share/doc/pymol
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/share/doc/pymol
+ cp -pr AUTHORS /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/share/doc/pymol
+ cp -pr DEVELOPERS /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/share/doc/pymol
+ cp -pr README.md /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/share/doc/pymol
+ cp -pr ChangeLog /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/share/doc/pymol
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.VbDPWH
+ umask 022
+ cd /builddir/build/BUILD
+ cd pymol-open-source-2.5.0
+ LICENSEDIR=/builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/share/licenses/pymol
+ export LC_ALL=C
+ LC_ALL=C
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/share/licenses/pymol
+ cp -pr LICENSE /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64/usr/share/licenses/pymol
+ exit 0
Provides: PyMOL(x86-64) = 0:2.5.0-6.el8 application() application(pymol.desktop) metainfo() metainfo(pymol.appdata.xml) pymol = 2.5.0-6.el8 pymol(x86-64) = 2.5.0-6.el8 python3.6dist(pymol) = 2.5.0 python3dist(pymol) = 2.5.0
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /bin/sh libGL.so.1()(64bit) libGLEW.so.2.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_2.7)(64bit) libfreetype.so.6()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(OMP_1.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.27)(64bit) libnetcdf.so.15()(64bit) libpng16.so.16()(64bit) libpng16.so.16(PNG16_0)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libpython3.6m.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.5)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.14)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.18)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.3)(64bit) python(abi) = 3.6 rtld(GNU_HASH)
Processing files: pymol-debugsource-2.5.0-6.el8.x86_64
Provides: pymol-debugsource = 2.5.0-6.el8 pymol-debugsource(x86-64) = 2.5.0-6.el8
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: pymol-debuginfo-2.5.0-6.el8.x86_64
Provides: debuginfo(build-id) = 8e12698237dfae2535decb9a228310fd92322792 debuginfo(build-id) = e441234133e8ee64412a7bd8dd74e2b95069305a pymol-debuginfo = 2.5.0-6.el8 pymol-debuginfo(x86-64) = 2.5.0-6.el8
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: pymol-debugsource(x86-64) = 2.5.0-6.el8
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64
Wrote: /builddir/build/RPMS/pymol-2.5.0-6.el8.x86_64.rpm
Wrote: /builddir/build/RPMS/pymol-debugsource-2.5.0-6.el8.x86_64.rpm
Wrote: /builddir/build/RPMS/pymol-debuginfo-2.5.0-6.el8.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.2AbXPQ
+ umask 022
+ cd /builddir/build/BUILD
+ cd pymol-open-source-2.5.0
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/pymol-2.5.0-6.el8.x86_64
+ exit 0
Finish: rpmbuild pymol-2.5.0-6.el8.src.rpm
Finish: build phase for pymol-2.5.0-6.el8.src.rpm
INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/rhel+epel-8-x86_64-1675244409.748214/root/var/log/dnf.rpm.log
/var/lib/mock/rhel+epel-8-x86_64-1675244409.748214/root/var/log/dnf.librepo.log
/var/lib/mock/rhel+epel-8-x86_64-1675244409.748214/root/var/log/dnf.log
INFO: Done(/var/lib/copr-rpmbuild/results/pymol-2.5.0-6.el8.src.rpm) Config(child) 4 minutes 1 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool